Multiple sequence alignment - TraesCS7B01G398400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G398400 chr7B 100.000 2212 0 0 1 2212 664796145 664798356 0.000000e+00 4085.0
1 TraesCS7B01G398400 chr7B 100.000 1084 0 0 2636 3719 664798780 664799863 0.000000e+00 2002.0
2 TraesCS7B01G398400 chr7B 87.059 935 67 21 973 1871 664936486 664937402 0.000000e+00 1007.0
3 TraesCS7B01G398400 chr7B 86.369 895 74 26 1141 2016 664969516 664968651 0.000000e+00 933.0
4 TraesCS7B01G398400 chr7B 83.505 873 109 18 1024 1873 665003783 665002923 0.000000e+00 782.0
5 TraesCS7B01G398400 chr7B 83.373 836 64 44 548 1334 664353517 664354326 0.000000e+00 704.0
6 TraesCS7B01G398400 chr7B 85.915 426 42 2 1457 1873 664354341 664354757 4.410000e-119 438.0
7 TraesCS7B01G398400 chr7B 86.032 315 25 10 157 457 664353203 664353512 1.670000e-83 320.0
8 TraesCS7B01G398400 chr7B 84.906 318 26 11 157 457 664325286 664325598 6.040000e-78 302.0
9 TraesCS7B01G398400 chr7B 92.398 171 6 3 163 328 664977518 664977350 1.730000e-58 237.0
10 TraesCS7B01G398400 chr7B 90.643 171 11 3 154 322 664935508 664935675 4.830000e-54 222.0
11 TraesCS7B01G398400 chr7B 90.756 119 11 0 996 1114 665284701 665284583 3.840000e-35 159.0
12 TraesCS7B01G398400 chr7B 89.247 93 8 2 465 557 432933329 432933239 8.440000e-22 115.0
13 TraesCS7B01G398400 chr7B 91.463 82 6 1 463 544 568100565 568100645 1.090000e-20 111.0
14 TraesCS7B01G398400 chr7B 87.500 96 9 3 463 557 40084602 40084695 1.410000e-19 108.0
15 TraesCS7B01G398400 chr7B 97.222 36 1 0 403 438 665285530 665285495 1.120000e-05 62.1
16 TraesCS7B01G398400 chr7B 100.000 28 0 0 874 901 665139520 665139493 7.000000e-03 52.8
17 TraesCS7B01G398400 chr7D 91.332 1592 64 33 555 2095 589857308 589858876 0.000000e+00 2108.0
18 TraesCS7B01G398400 chr7D 85.402 1007 97 26 1112 2098 590064125 590063149 0.000000e+00 1000.0
19 TraesCS7B01G398400 chr7D 82.127 1119 103 39 970 2011 589869497 589868399 0.000000e+00 869.0
20 TraesCS7B01G398400 chr7D 91.332 623 51 1 3100 3719 589859417 589860039 0.000000e+00 848.0
21 TraesCS7B01G398400 chr7D 81.400 914 105 22 1006 1873 590330254 590329360 0.000000e+00 686.0
22 TraesCS7B01G398400 chr7D 92.995 414 26 3 2636 3047 589859008 589859420 5.310000e-168 601.0
23 TraesCS7B01G398400 chr7D 94.231 312 8 4 149 457 589856998 589857302 5.620000e-128 468.0
24 TraesCS7B01G398400 chr7D 81.381 478 27 26 683 1114 590064611 590064150 2.140000e-87 333.0
25 TraesCS7B01G398400 chr7D 82.647 340 24 18 149 457 590065062 590064727 6.120000e-68 268.0
26 TraesCS7B01G398400 chr7D 90.751 173 10 5 155 322 589870037 589869866 3.740000e-55 226.0
27 TraesCS7B01G398400 chr7D 91.667 132 7 2 192 322 458778059 458777931 2.950000e-41 180.0
28 TraesCS7B01G398400 chr7D 92.222 90 2 4 61 146 590065196 590065108 5.040000e-24 122.0
29 TraesCS7B01G398400 chr7D 92.593 81 5 1 67 146 589856873 589856953 8.440000e-22 115.0
30 TraesCS7B01G398400 chr7D 87.500 80 6 4 751 828 589869647 589869570 5.120000e-14 89.8
31 TraesCS7B01G398400 chr7A 86.702 1143 84 34 1002 2098 681579502 681580622 0.000000e+00 1206.0
32 TraesCS7B01G398400 chr7A 83.752 1274 86 43 684 1875 681386844 681388078 0.000000e+00 1094.0
33 TraesCS7B01G398400 chr7A 85.213 940 76 24 990 1874 681614442 681613511 0.000000e+00 907.0
34 TraesCS7B01G398400 chr7A 86.257 684 83 5 1200 1873 681260663 681261345 0.000000e+00 732.0
35 TraesCS7B01G398400 chr7A 84.466 309 33 13 157 457 681386339 681386640 1.310000e-74 291.0
36 TraesCS7B01G398400 chr7A 85.315 286 23 7 169 438 681697625 681697343 1.020000e-70 278.0
37 TraesCS7B01G398400 chr7A 81.341 343 27 14 154 464 681578697 681579034 1.030000e-60 244.0
38 TraesCS7B01G398400 chr7A 82.051 312 27 11 166 448 681615392 681615081 4.800000e-59 239.0
39 TraesCS7B01G398400 chr7A 83.889 180 19 7 558 735 681697320 681697149 2.970000e-36 163.0
40 TraesCS7B01G398400 chr7A 91.111 90 7 1 58 146 681386183 681386272 1.810000e-23 121.0
41 TraesCS7B01G398400 chr7A 79.375 160 17 11 772 929 681697143 681696998 8.500000e-17 99.0
42 TraesCS7B01G398400 chr2D 84.170 259 36 4 3464 3719 482655797 482655541 2.870000e-61 246.0
43 TraesCS7B01G398400 chr1A 90.909 176 11 3 149 322 550145647 550145819 8.030000e-57 231.0
44 TraesCS7B01G398400 chr2B 93.258 89 4 2 470 558 40652907 40652821 3.010000e-26 130.0
45 TraesCS7B01G398400 chr2B 92.135 89 5 2 469 557 69158266 69158180 1.400000e-24 124.0
46 TraesCS7B01G398400 chr2B 89.583 96 8 1 470 565 760948745 760948652 1.810000e-23 121.0
47 TraesCS7B01G398400 chr2B 90.323 93 7 2 465 557 793520455 793520545 1.810000e-23 121.0
48 TraesCS7B01G398400 chr2B 87.255 102 10 3 457 558 297439036 297438938 3.040000e-21 113.0
49 TraesCS7B01G398400 chr5B 93.182 88 4 2 470 557 661634228 661634313 1.080000e-25 128.0
50 TraesCS7B01G398400 chr5B 92.222 90 5 2 469 558 379447417 379447330 3.900000e-25 126.0
51 TraesCS7B01G398400 chr5B 90.426 94 6 3 464 557 526271481 526271391 1.810000e-23 121.0
52 TraesCS7B01G398400 chr4A 89.216 102 8 2 470 571 607266593 607266495 1.400000e-24 124.0
53 TraesCS7B01G398400 chr4A 84.545 110 13 4 450 558 607266488 607266594 5.080000e-19 106.0
54 TraesCS7B01G398400 chr3A 92.135 89 5 2 470 558 708819195 708819281 1.400000e-24 124.0
55 TraesCS7B01G398400 chr3B 88.889 99 8 2 470 568 674477279 674477184 6.520000e-23 119.0
56 TraesCS7B01G398400 chr4B 87.037 108 9 4 451 557 250706470 250706573 2.350000e-22 117.0
57 TraesCS7B01G398400 chr6B 89.773 88 7 2 470 557 417242816 417242731 1.090000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G398400 chr7B 664796145 664799863 3718 False 3043.500000 4085 100.000000 1 3719 2 chr7B.!!$F5 3718
1 TraesCS7B01G398400 chr7B 664968651 664969516 865 True 933.000000 933 86.369000 1141 2016 1 chr7B.!!$R2 875
2 TraesCS7B01G398400 chr7B 665002923 665003783 860 True 782.000000 782 83.505000 1024 1873 1 chr7B.!!$R4 849
3 TraesCS7B01G398400 chr7B 664935508 664937402 1894 False 614.500000 1007 88.851000 154 1871 2 chr7B.!!$F6 1717
4 TraesCS7B01G398400 chr7B 664353203 664354757 1554 False 487.333333 704 85.106667 157 1873 3 chr7B.!!$F4 1716
5 TraesCS7B01G398400 chr7D 589856873 589860039 3166 False 828.000000 2108 92.496600 67 3719 5 chr7D.!!$F1 3652
6 TraesCS7B01G398400 chr7D 590329360 590330254 894 True 686.000000 686 81.400000 1006 1873 1 chr7D.!!$R2 867
7 TraesCS7B01G398400 chr7D 590063149 590065196 2047 True 430.750000 1000 85.413000 61 2098 4 chr7D.!!$R4 2037
8 TraesCS7B01G398400 chr7D 589868399 589870037 1638 True 394.933333 869 86.792667 155 2011 3 chr7D.!!$R3 1856
9 TraesCS7B01G398400 chr7A 681260663 681261345 682 False 732.000000 732 86.257000 1200 1873 1 chr7A.!!$F1 673
10 TraesCS7B01G398400 chr7A 681578697 681580622 1925 False 725.000000 1206 84.021500 154 2098 2 chr7A.!!$F3 1944
11 TraesCS7B01G398400 chr7A 681613511 681615392 1881 True 573.000000 907 83.632000 166 1874 2 chr7A.!!$R1 1708
12 TraesCS7B01G398400 chr7A 681386183 681388078 1895 False 502.000000 1094 86.443000 58 1875 3 chr7A.!!$F2 1817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1495 0.178876 TTCACCACCCTCTCATCCCA 60.179 55.0 0.0 0.0 0.0 4.37 F
1770 2891 0.543410 TCTTCTTCTACCCGGTGCCA 60.543 55.0 0.0 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 3245 1.004918 AGCTTAACTTCAGCGCCGT 60.005 52.632 2.29 0.0 42.55 5.68 R
3495 4659 0.373370 TTGCGCGCTGTAGCATTAAG 59.627 50.000 33.29 0.0 43.42 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.330900 CTATTTGCATCACCATTCTTCTTCT 57.669 36.000 0.00 0.00 0.00 2.85
25 26 6.600882 ATTTGCATCACCATTCTTCTTCTT 57.399 33.333 0.00 0.00 0.00 2.52
26 27 5.633830 TTGCATCACCATTCTTCTTCTTC 57.366 39.130 0.00 0.00 0.00 2.87
27 28 4.914983 TGCATCACCATTCTTCTTCTTCT 58.085 39.130 0.00 0.00 0.00 2.85
28 29 5.319453 TGCATCACCATTCTTCTTCTTCTT 58.681 37.500 0.00 0.00 0.00 2.52
29 30 5.413833 TGCATCACCATTCTTCTTCTTCTTC 59.586 40.000 0.00 0.00 0.00 2.87
30 31 5.647225 GCATCACCATTCTTCTTCTTCTTCT 59.353 40.000 0.00 0.00 0.00 2.85
31 32 6.150809 GCATCACCATTCTTCTTCTTCTTCTT 59.849 38.462 0.00 0.00 0.00 2.52
32 33 7.626028 GCATCACCATTCTTCTTCTTCTTCTTC 60.626 40.741 0.00 0.00 0.00 2.87
33 34 7.072263 TCACCATTCTTCTTCTTCTTCTTCT 57.928 36.000 0.00 0.00 0.00 2.85
34 35 7.512992 TCACCATTCTTCTTCTTCTTCTTCTT 58.487 34.615 0.00 0.00 0.00 2.52
35 36 7.659390 TCACCATTCTTCTTCTTCTTCTTCTTC 59.341 37.037 0.00 0.00 0.00 2.87
36 37 7.661027 CACCATTCTTCTTCTTCTTCTTCTTCT 59.339 37.037 0.00 0.00 0.00 2.85
37 38 8.217111 ACCATTCTTCTTCTTCTTCTTCTTCTT 58.783 33.333 0.00 0.00 0.00 2.52
38 39 8.720562 CCATTCTTCTTCTTCTTCTTCTTCTTC 58.279 37.037 0.00 0.00 0.00 2.87
39 40 9.492973 CATTCTTCTTCTTCTTCTTCTTCTTCT 57.507 33.333 0.00 0.00 0.00 2.85
41 42 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
42 43 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
43 44 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
44 45 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
45 46 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
46 47 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
47 48 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
48 49 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
49 50 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
50 51 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
51 52 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
52 53 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
53 54 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
54 55 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
55 56 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
56 57 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
57 58 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
58 59 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
59 60 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
85 93 7.962995 TCTTCTTCTTCTTCTTCTGCCTATA 57.037 36.000 0.00 0.00 0.00 1.31
128 136 4.560035 CCTGCATCGTCATTCATTTGTTTC 59.440 41.667 0.00 0.00 0.00 2.78
146 154 7.595819 TTGTTTCAAATGGGTCTGTAATCTT 57.404 32.000 0.00 0.00 0.00 2.40
147 155 7.214467 TGTTTCAAATGGGTCTGTAATCTTC 57.786 36.000 0.00 0.00 0.00 2.87
152 208 6.316140 TCAAATGGGTCTGTAATCTTCAATCG 59.684 38.462 0.00 0.00 0.00 3.34
222 291 1.200020 GCATGTGTACAGAAAGCACCC 59.800 52.381 13.62 0.00 32.62 4.61
249 318 5.607477 GATGCAAAATTGATGGGATCATGT 58.393 37.500 0.00 0.00 39.39 3.21
346 426 0.318441 ATACAGCATCATCGTCGGGG 59.682 55.000 0.00 0.00 0.00 5.73
393 763 3.373439 CAGTAGAGAAGAACATGCCTTGC 59.627 47.826 5.77 0.00 0.00 4.01
473 858 3.971150 CTGTATGCAGCTGTAGGTACTC 58.029 50.000 16.64 0.00 36.35 2.59
474 859 2.693591 TGTATGCAGCTGTAGGTACTCC 59.306 50.000 16.64 0.00 41.75 3.85
475 860 1.866015 ATGCAGCTGTAGGTACTCCA 58.134 50.000 16.64 1.14 41.75 3.86
476 861 1.866015 TGCAGCTGTAGGTACTCCAT 58.134 50.000 16.64 0.00 41.75 3.41
477 862 1.757118 TGCAGCTGTAGGTACTCCATC 59.243 52.381 16.64 0.00 41.75 3.51
478 863 1.269309 GCAGCTGTAGGTACTCCATCG 60.269 57.143 16.64 0.00 41.75 3.84
479 864 1.338337 CAGCTGTAGGTACTCCATCGG 59.662 57.143 5.25 0.00 41.75 4.18
480 865 1.063867 AGCTGTAGGTACTCCATCGGT 60.064 52.381 0.00 0.00 41.75 4.69
481 866 1.755380 GCTGTAGGTACTCCATCGGTT 59.245 52.381 0.00 0.00 41.75 4.44
482 867 2.223758 GCTGTAGGTACTCCATCGGTTC 60.224 54.545 0.00 0.00 41.75 3.62
483 868 3.288964 CTGTAGGTACTCCATCGGTTCT 58.711 50.000 0.00 0.00 41.75 3.01
484 869 3.021695 TGTAGGTACTCCATCGGTTCTG 58.978 50.000 0.00 0.00 41.75 3.02
485 870 2.526888 AGGTACTCCATCGGTTCTGA 57.473 50.000 0.00 0.00 35.89 3.27
486 871 3.033659 AGGTACTCCATCGGTTCTGAT 57.966 47.619 0.00 0.00 35.89 2.90
487 872 3.375699 AGGTACTCCATCGGTTCTGATT 58.624 45.455 0.00 0.00 35.89 2.57
488 873 3.775316 AGGTACTCCATCGGTTCTGATTT 59.225 43.478 0.00 0.00 35.89 2.17
489 874 4.960469 AGGTACTCCATCGGTTCTGATTTA 59.040 41.667 0.00 0.00 35.89 1.40
490 875 5.048507 GGTACTCCATCGGTTCTGATTTAC 58.951 45.833 0.00 0.00 0.00 2.01
491 876 5.163437 GGTACTCCATCGGTTCTGATTTACT 60.163 44.000 0.00 0.00 0.00 2.24
492 877 5.012328 ACTCCATCGGTTCTGATTTACTC 57.988 43.478 0.00 0.00 0.00 2.59
493 878 4.466370 ACTCCATCGGTTCTGATTTACTCA 59.534 41.667 0.00 0.00 0.00 3.41
494 879 5.129485 ACTCCATCGGTTCTGATTTACTCAT 59.871 40.000 0.00 0.00 32.10 2.90
495 880 5.989477 TCCATCGGTTCTGATTTACTCATT 58.011 37.500 0.00 0.00 32.10 2.57
496 881 5.817296 TCCATCGGTTCTGATTTACTCATTG 59.183 40.000 0.00 0.00 32.10 2.82
497 882 5.586243 CCATCGGTTCTGATTTACTCATTGT 59.414 40.000 0.00 0.00 32.10 2.71
498 883 6.457392 CCATCGGTTCTGATTTACTCATTGTG 60.457 42.308 0.00 0.00 32.10 3.33
499 884 4.935205 TCGGTTCTGATTTACTCATTGTGG 59.065 41.667 0.00 0.00 32.10 4.17
500 885 4.695455 CGGTTCTGATTTACTCATTGTGGT 59.305 41.667 0.00 0.00 32.10 4.16
501 886 5.181245 CGGTTCTGATTTACTCATTGTGGTT 59.819 40.000 0.00 0.00 32.10 3.67
502 887 6.293955 CGGTTCTGATTTACTCATTGTGGTTT 60.294 38.462 0.00 0.00 32.10 3.27
503 888 7.433680 GGTTCTGATTTACTCATTGTGGTTTT 58.566 34.615 0.00 0.00 32.10 2.43
504 889 8.573035 GGTTCTGATTTACTCATTGTGGTTTTA 58.427 33.333 0.00 0.00 32.10 1.52
505 890 9.959749 GTTCTGATTTACTCATTGTGGTTTTAA 57.040 29.630 0.00 0.00 32.10 1.52
530 915 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
531 916 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
532 917 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
533 918 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
534 919 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
535 920 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
536 921 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
537 922 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
538 923 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
539 924 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
552 937 3.467803 GAGTAAATCGGAATGTGGAGGG 58.532 50.000 0.00 0.00 0.00 4.30
553 938 3.112263 AGTAAATCGGAATGTGGAGGGA 58.888 45.455 0.00 0.00 0.00 4.20
554 939 2.717639 AAATCGGAATGTGGAGGGAG 57.282 50.000 0.00 0.00 0.00 4.30
555 940 1.584724 AATCGGAATGTGGAGGGAGT 58.415 50.000 0.00 0.00 0.00 3.85
556 941 2.471815 ATCGGAATGTGGAGGGAGTA 57.528 50.000 0.00 0.00 0.00 2.59
557 942 1.776662 TCGGAATGTGGAGGGAGTAG 58.223 55.000 0.00 0.00 0.00 2.57
578 1000 3.000727 GGTAGGAACAACATTCCACTCG 58.999 50.000 8.35 0.00 41.00 4.18
632 1060 4.374399 CCGTCCTTAAACACTGTAGTTGT 58.626 43.478 0.00 0.00 0.00 3.32
672 1101 2.125350 GGTGAAGAGGGCAGAGCG 60.125 66.667 0.00 0.00 0.00 5.03
738 1260 2.750637 CCTGCAGCCTGCCTCTTG 60.751 66.667 15.29 0.00 44.23 3.02
739 1261 2.350134 CTGCAGCCTGCCTCTTGA 59.650 61.111 15.29 0.00 44.23 3.02
740 1262 1.303074 CTGCAGCCTGCCTCTTGAA 60.303 57.895 15.29 0.00 44.23 2.69
742 1264 2.338785 GCAGCCTGCCTCTTGAACC 61.339 63.158 5.06 0.00 37.42 3.62
744 1266 1.849823 AGCCTGCCTCTTGAACCCT 60.850 57.895 0.00 0.00 0.00 4.34
747 1269 2.001076 CCTGCCTCTTGAACCCTTTT 57.999 50.000 0.00 0.00 0.00 2.27
748 1270 2.319844 CCTGCCTCTTGAACCCTTTTT 58.680 47.619 0.00 0.00 0.00 1.94
749 1271 2.036346 CCTGCCTCTTGAACCCTTTTTG 59.964 50.000 0.00 0.00 0.00 2.44
780 1307 0.395724 TGCTGCTCCTCATCCGTCTA 60.396 55.000 0.00 0.00 0.00 2.59
788 1315 4.021544 GCTCCTCATCCGTCTAATCTGATT 60.022 45.833 8.14 8.14 0.00 2.57
808 1340 6.908825 TGATTCGTATTGAACCCTTTTTCTG 58.091 36.000 0.00 0.00 40.00 3.02
811 1346 4.023536 TCGTATTGAACCCTTTTTCTGCAC 60.024 41.667 0.00 0.00 0.00 4.57
918 1495 0.178876 TTCACCACCCTCTCATCCCA 60.179 55.000 0.00 0.00 0.00 4.37
933 1510 2.988636 TCCCACCCACAATCATTTGA 57.011 45.000 0.00 0.00 36.64 2.69
965 1543 1.272704 TGCACTGCCCTTCTCTCTCTA 60.273 52.381 0.00 0.00 0.00 2.43
966 1544 1.136110 GCACTGCCCTTCTCTCTCTAC 59.864 57.143 0.00 0.00 0.00 2.59
970 1548 1.641192 TGCCCTTCTCTCTCTACCTCA 59.359 52.381 0.00 0.00 0.00 3.86
978 1557 4.358214 TCTCTCTCTACCTCACTCTCTCA 58.642 47.826 0.00 0.00 0.00 3.27
1198 2262 1.666054 CAGCTCAGCCAATTCTCTCC 58.334 55.000 0.00 0.00 0.00 3.71
1395 2482 4.235762 ACTGCCGTTGCCGACACT 62.236 61.111 0.00 0.00 36.33 3.55
1770 2891 0.543410 TCTTCTTCTACCCGGTGCCA 60.543 55.000 0.00 0.00 0.00 4.92
1794 2915 2.030562 CTGGCCACCGTCTTCGTT 59.969 61.111 0.00 0.00 35.01 3.85
1948 3079 3.113979 CGCTGACACGCATGCTGA 61.114 61.111 17.13 0.00 0.00 4.26
2061 3206 3.403057 GACGAGCGCGCAAGACAA 61.403 61.111 35.10 0.00 42.48 3.18
2062 3207 3.340721 GACGAGCGCGCAAGACAAG 62.341 63.158 35.10 17.13 42.48 3.16
2086 3231 5.455056 AGACGTTGTAGTTGAATCACTCT 57.545 39.130 0.00 0.00 0.00 3.24
2087 3232 5.462405 AGACGTTGTAGTTGAATCACTCTC 58.538 41.667 0.00 0.00 0.00 3.20
2098 3243 2.630889 ATCACTCTCAACTCCCCTCA 57.369 50.000 0.00 0.00 0.00 3.86
2099 3244 1.633774 TCACTCTCAACTCCCCTCAC 58.366 55.000 0.00 0.00 0.00 3.51
2100 3245 1.133167 TCACTCTCAACTCCCCTCACA 60.133 52.381 0.00 0.00 0.00 3.58
2101 3246 1.001406 CACTCTCAACTCCCCTCACAC 59.999 57.143 0.00 0.00 0.00 3.82
2102 3247 0.244994 CTCTCAACTCCCCTCACACG 59.755 60.000 0.00 0.00 0.00 4.49
2103 3248 1.185618 TCTCAACTCCCCTCACACGG 61.186 60.000 0.00 0.00 0.00 4.94
2104 3249 2.358737 CAACTCCCCTCACACGGC 60.359 66.667 0.00 0.00 0.00 5.68
2105 3250 4.003788 AACTCCCCTCACACGGCG 62.004 66.667 4.80 4.80 0.00 6.46
2111 3256 3.114616 CCTCACACGGCGCTGAAG 61.115 66.667 25.98 17.21 0.00 3.02
2112 3257 2.356313 CTCACACGGCGCTGAAGT 60.356 61.111 25.98 17.92 0.00 3.01
2114 3259 0.666274 CTCACACGGCGCTGAAGTTA 60.666 55.000 25.98 11.37 0.00 2.24
2115 3260 0.249531 TCACACGGCGCTGAAGTTAA 60.250 50.000 25.98 8.55 0.00 2.01
2117 3262 1.132640 CACGGCGCTGAAGTTAAGC 59.867 57.895 25.98 1.59 37.31 3.09
2118 3263 1.004918 ACGGCGCTGAAGTTAAGCT 60.005 52.632 25.98 0.00 38.57 3.74
2119 3264 1.014564 ACGGCGCTGAAGTTAAGCTC 61.015 55.000 25.98 1.94 38.57 4.09
2122 3267 1.135944 GGCGCTGAAGTTAAGCTCAAC 60.136 52.381 7.64 0.00 38.57 3.18
2123 3268 1.801178 GCGCTGAAGTTAAGCTCAACT 59.199 47.619 10.59 0.00 40.49 3.16
2124 3269 2.993899 GCGCTGAAGTTAAGCTCAACTA 59.006 45.455 1.71 0.00 37.78 2.24
2126 3271 4.238514 CGCTGAAGTTAAGCTCAACTACT 58.761 43.478 1.71 0.00 37.78 2.57
2127 3272 5.399858 CGCTGAAGTTAAGCTCAACTACTA 58.600 41.667 1.71 0.00 37.78 1.82
2128 3273 5.286558 CGCTGAAGTTAAGCTCAACTACTAC 59.713 44.000 1.71 0.00 37.78 2.73
2129 3274 6.391537 GCTGAAGTTAAGCTCAACTACTACT 58.608 40.000 1.71 0.00 37.78 2.57
2130 3275 7.536855 GCTGAAGTTAAGCTCAACTACTACTA 58.463 38.462 1.71 0.00 37.78 1.82
2131 3276 7.485595 GCTGAAGTTAAGCTCAACTACTACTAC 59.514 40.741 1.71 0.00 37.78 2.73
2132 3277 8.632906 TGAAGTTAAGCTCAACTACTACTACT 57.367 34.615 1.71 0.00 37.78 2.57
2133 3278 9.730705 TGAAGTTAAGCTCAACTACTACTACTA 57.269 33.333 1.71 0.00 37.78 1.82
2134 3279 9.986833 GAAGTTAAGCTCAACTACTACTACTAC 57.013 37.037 1.71 0.00 37.78 2.73
2135 3280 9.737844 AAGTTAAGCTCAACTACTACTACTACT 57.262 33.333 1.71 0.00 37.78 2.57
2140 3285 9.816354 AAGCTCAACTACTACTACTACTACTAC 57.184 37.037 0.00 0.00 0.00 2.73
2141 3286 9.200817 AGCTCAACTACTACTACTACTACTACT 57.799 37.037 0.00 0.00 0.00 2.57
2142 3287 9.463443 GCTCAACTACTACTACTACTACTACTC 57.537 40.741 0.00 0.00 0.00 2.59
2162 3307 6.219417 ACTCTACTAGTAGCACTCGAGTTA 57.781 41.667 22.87 3.81 36.36 2.24
2172 3317 2.338500 CACTCGAGTTAAGCTCAACCC 58.662 52.381 17.26 0.00 44.33 4.11
2181 3326 2.125350 GCTCAACCCCTCAGCTCG 60.125 66.667 0.00 0.00 0.00 5.03
2185 3330 3.764466 AACCCCTCAGCTCGCTCG 61.764 66.667 0.00 0.00 0.00 5.03
2189 3348 4.903355 CCTCAGCTCGCTCGCTCG 62.903 72.222 0.00 0.00 38.41 5.03
2660 3819 2.800544 CACGACCTGTTTTGGTGACTAG 59.199 50.000 0.00 0.00 41.00 2.57
2698 3857 5.236478 ACGGTCAAAGTCTGTTCTATTGTTG 59.764 40.000 0.00 0.00 0.00 3.33
2714 3873 7.584108 TCTATTGTTGATGCACTACAAGTTTG 58.416 34.615 16.25 9.62 44.26 2.93
2756 3915 7.591426 GCATACAAGGCTATTTGTATTTGTAGC 59.409 37.037 14.70 12.13 46.70 3.58
2769 3928 6.303839 TGTATTTGTAGCCTTTCTGGTTTCT 58.696 36.000 0.00 0.00 38.35 2.52
2788 3947 7.284261 TGGTTTCTCAAACTGACATAAACATGA 59.716 33.333 0.00 0.00 41.14 3.07
2832 3991 5.948992 ACTTAACCAAGTCTCATTCAAGC 57.051 39.130 0.00 0.00 41.25 4.01
2839 3998 2.408050 AGTCTCATTCAAGCGACACAC 58.592 47.619 0.00 0.00 0.00 3.82
2840 3999 2.135139 GTCTCATTCAAGCGACACACA 58.865 47.619 0.00 0.00 0.00 3.72
2841 4000 2.738846 GTCTCATTCAAGCGACACACAT 59.261 45.455 0.00 0.00 0.00 3.21
2842 4001 3.926527 GTCTCATTCAAGCGACACACATA 59.073 43.478 0.00 0.00 0.00 2.29
2843 4002 4.568359 GTCTCATTCAAGCGACACACATAT 59.432 41.667 0.00 0.00 0.00 1.78
2844 4003 5.748630 GTCTCATTCAAGCGACACACATATA 59.251 40.000 0.00 0.00 0.00 0.86
2845 4004 5.979517 TCTCATTCAAGCGACACACATATAG 59.020 40.000 0.00 0.00 0.00 1.31
2849 4010 7.333174 TCATTCAAGCGACACACATATAGAAAA 59.667 33.333 0.00 0.00 0.00 2.29
2908 4069 3.371087 GGGTGAGGATCTCGCTTTC 57.629 57.895 8.15 0.00 40.43 2.62
2914 4075 0.827368 AGGATCTCGCTTTCTCACCC 59.173 55.000 0.00 0.00 0.00 4.61
2940 4101 3.656045 GCACCCACCACGTTTCCG 61.656 66.667 0.00 0.00 40.83 4.30
2944 4105 4.939368 CCACCACGTTTCCGCCCA 62.939 66.667 0.00 0.00 37.70 5.36
2986 4147 0.738389 CACATTGGTGGATTACGGGC 59.262 55.000 0.00 0.00 41.45 6.13
2993 4154 1.675415 GGTGGATTACGGGCGTTTACA 60.675 52.381 0.00 0.00 0.00 2.41
3001 4162 1.376812 GGGCGTTTACAGACCCCAG 60.377 63.158 0.00 0.00 36.24 4.45
3032 4193 2.344535 GAAGCTTGCCTTCCTTGCA 58.655 52.632 2.10 0.00 43.39 4.08
3041 4202 1.407989 GCCTTCCTTGCAGAGCTACAT 60.408 52.381 0.00 0.00 0.00 2.29
3043 4204 2.093288 CCTTCCTTGCAGAGCTACATGA 60.093 50.000 0.00 0.00 0.00 3.07
3044 4205 2.680312 TCCTTGCAGAGCTACATGAC 57.320 50.000 0.00 0.00 0.00 3.06
3045 4206 2.182827 TCCTTGCAGAGCTACATGACT 58.817 47.619 0.00 0.00 0.00 3.41
3046 4207 2.568956 TCCTTGCAGAGCTACATGACTT 59.431 45.455 0.00 0.00 0.00 3.01
3047 4208 3.008375 TCCTTGCAGAGCTACATGACTTT 59.992 43.478 0.00 0.00 0.00 2.66
3048 4209 3.373439 CCTTGCAGAGCTACATGACTTTC 59.627 47.826 0.00 0.00 0.00 2.62
3049 4210 2.610433 TGCAGAGCTACATGACTTTCG 58.390 47.619 0.00 0.00 0.00 3.46
3050 4211 2.029020 TGCAGAGCTACATGACTTTCGT 60.029 45.455 0.00 0.00 0.00 3.85
3051 4212 3.192633 TGCAGAGCTACATGACTTTCGTA 59.807 43.478 0.00 0.00 0.00 3.43
3052 4213 3.794028 GCAGAGCTACATGACTTTCGTAG 59.206 47.826 0.00 0.00 36.51 3.51
3064 4225 4.476410 TCGTAGCACGAGCGCAGG 62.476 66.667 11.47 2.47 46.73 4.85
3065 4226 4.476410 CGTAGCACGAGCGCAGGA 62.476 66.667 11.47 0.00 46.05 3.86
3070 4231 3.190849 CACGAGCGCAGGACCATG 61.191 66.667 11.47 0.00 0.00 3.66
3071 4232 4.457496 ACGAGCGCAGGACCATGG 62.457 66.667 11.19 11.19 0.00 3.66
3073 4234 4.479993 GAGCGCAGGACCATGGCT 62.480 66.667 13.04 0.00 36.51 4.75
3074 4235 3.984193 GAGCGCAGGACCATGGCTT 62.984 63.158 13.04 0.00 33.40 4.35
3075 4236 3.818787 GCGCAGGACCATGGCTTG 61.819 66.667 13.04 12.42 0.00 4.01
3076 4237 2.360350 CGCAGGACCATGGCTTGT 60.360 61.111 13.04 0.00 0.00 3.16
3077 4238 2.693762 CGCAGGACCATGGCTTGTG 61.694 63.158 13.04 13.77 0.00 3.33
3078 4239 2.345760 GCAGGACCATGGCTTGTGG 61.346 63.158 13.04 0.00 42.55 4.17
3079 4240 1.679977 CAGGACCATGGCTTGTGGG 60.680 63.158 13.04 0.00 41.14 4.61
3080 4241 2.162906 AGGACCATGGCTTGTGGGT 61.163 57.895 13.04 0.00 41.14 4.51
3081 4242 1.978617 GGACCATGGCTTGTGGGTG 60.979 63.158 13.04 0.00 41.14 4.61
3082 4243 1.978617 GACCATGGCTTGTGGGTGG 60.979 63.158 13.04 0.00 41.14 4.61
3083 4244 3.384532 CCATGGCTTGTGGGTGGC 61.385 66.667 0.00 0.00 32.98 5.01
3084 4245 2.601067 CATGGCTTGTGGGTGGCA 60.601 61.111 0.00 0.00 42.73 4.92
3085 4246 2.200930 ATGGCTTGTGGGTGGCAA 59.799 55.556 0.00 0.00 41.89 4.52
3086 4247 2.209315 ATGGCTTGTGGGTGGCAAC 61.209 57.895 0.00 0.00 41.89 4.17
3087 4248 2.521708 GGCTTGTGGGTGGCAACT 60.522 61.111 0.97 0.00 37.61 3.16
3088 4249 2.133641 GGCTTGTGGGTGGCAACTT 61.134 57.895 0.97 0.00 37.61 2.66
3089 4250 1.685355 GGCTTGTGGGTGGCAACTTT 61.685 55.000 0.97 0.00 37.61 2.66
3090 4251 1.036707 GCTTGTGGGTGGCAACTTTA 58.963 50.000 0.97 0.00 37.61 1.85
3091 4252 1.410882 GCTTGTGGGTGGCAACTTTAA 59.589 47.619 0.97 0.00 37.61 1.52
3092 4253 2.801699 GCTTGTGGGTGGCAACTTTAAC 60.802 50.000 0.97 0.00 37.61 2.01
3093 4254 2.145397 TGTGGGTGGCAACTTTAACA 57.855 45.000 0.97 0.00 37.61 2.41
3094 4255 2.672098 TGTGGGTGGCAACTTTAACAT 58.328 42.857 0.97 0.00 37.61 2.71
3095 4256 2.363680 TGTGGGTGGCAACTTTAACATG 59.636 45.455 0.97 0.00 37.61 3.21
3096 4257 1.967066 TGGGTGGCAACTTTAACATGG 59.033 47.619 0.97 0.00 37.61 3.66
3097 4258 1.967779 GGGTGGCAACTTTAACATGGT 59.032 47.619 0.97 0.00 37.61 3.55
3098 4259 2.029380 GGGTGGCAACTTTAACATGGTC 60.029 50.000 0.97 0.00 37.61 4.02
3103 4264 4.404073 TGGCAACTTTAACATGGTCACTTT 59.596 37.500 0.00 0.00 37.61 2.66
3113 4274 0.534203 TGGTCACTTTTGCGGAGGAC 60.534 55.000 0.00 0.00 0.00 3.85
3114 4275 0.534203 GGTCACTTTTGCGGAGGACA 60.534 55.000 0.00 0.00 0.00 4.02
3137 4301 3.262405 AGAACAATAGGCTTAACCACCGA 59.738 43.478 0.00 0.00 43.14 4.69
3145 4309 3.117888 AGGCTTAACCACCGAATCATGAT 60.118 43.478 1.18 1.18 43.14 2.45
3153 4317 1.151668 CCGAATCATGATCCGCTTCC 58.848 55.000 9.07 0.00 0.00 3.46
3182 4346 1.667830 CGCGGACATGGAGTTGTGT 60.668 57.895 0.00 0.00 0.00 3.72
3194 4358 6.156949 ACATGGAGTTGTGTGATATCTACCTT 59.843 38.462 3.98 0.00 0.00 3.50
3276 4440 1.416772 GAGTCTTATGCACCCCTACCC 59.583 57.143 0.00 0.00 0.00 3.69
3314 4478 1.532868 AGTTGCATGCTTCGTTGTCTC 59.467 47.619 20.33 0.00 0.00 3.36
3368 4532 1.003839 GGATTGTGCGTCCACCTCA 60.004 57.895 0.00 0.00 41.35 3.86
3373 4537 3.695606 TGCGTCCACCTCAGAGGC 61.696 66.667 17.31 1.60 43.62 4.70
3377 4541 4.704103 TCCACCTCAGAGGCCGCT 62.704 66.667 17.31 1.77 39.63 5.52
3393 4557 1.399727 CCGCTAAACGCTTCCACTTTG 60.400 52.381 0.00 0.00 41.76 2.77
3405 4569 0.667993 CCACTTTGAGCGCTTTTGGA 59.332 50.000 13.26 0.00 0.00 3.53
3406 4570 1.270550 CCACTTTGAGCGCTTTTGGAT 59.729 47.619 13.26 0.00 0.00 3.41
3408 4572 3.383761 CACTTTGAGCGCTTTTGGATTT 58.616 40.909 13.26 0.00 0.00 2.17
3416 4580 3.572255 AGCGCTTTTGGATTTAGTTGGAA 59.428 39.130 2.64 0.00 0.00 3.53
3420 4584 5.508994 CGCTTTTGGATTTAGTTGGAAGGTT 60.509 40.000 0.00 0.00 0.00 3.50
3425 4589 8.485578 TTTGGATTTAGTTGGAAGGTTACATT 57.514 30.769 0.00 0.00 0.00 2.71
3439 4603 3.482436 GTTACATTGAGGTTGTGTCCCA 58.518 45.455 0.00 0.00 0.00 4.37
3442 4606 1.149101 ATTGAGGTTGTGTCCCAGGT 58.851 50.000 0.00 0.00 0.00 4.00
3495 4659 3.041874 CGCAGGATCTATGATCGCC 57.958 57.895 3.08 0.00 0.00 5.54
3500 4664 4.679106 CGCAGGATCTATGATCGCCTTAAT 60.679 45.833 3.08 0.00 0.00 1.40
3506 4670 5.722021 TCTATGATCGCCTTAATGCTACA 57.278 39.130 1.17 0.00 0.00 2.74
3547 4711 4.918201 GGCGAGGAAGATGGGCGG 62.918 72.222 0.00 0.00 0.00 6.13
3556 4720 3.564218 GATGGGCGGCATCTCCCT 61.564 66.667 12.47 0.00 43.04 4.20
3573 4737 2.091333 TCCCTCCAACTTTTGCTTTCCT 60.091 45.455 0.00 0.00 0.00 3.36
3584 4748 2.408271 TGCTTTCCTGCGAGATCATT 57.592 45.000 0.00 0.00 35.36 2.57
3588 4752 0.464373 TTCCTGCGAGATCATTGCCC 60.464 55.000 0.00 0.00 37.53 5.36
3589 4753 1.153107 CCTGCGAGATCATTGCCCA 60.153 57.895 0.00 0.00 37.53 5.36
3606 4770 2.563013 CCACCTGGATGAGGGGCAAG 62.563 65.000 0.00 0.00 45.34 4.01
3617 4781 3.706373 GGGCAAGACTCTCGGCCA 61.706 66.667 18.58 0.00 44.46 5.36
3665 4829 0.110644 GCAAGCTCAAGCACACGTAC 60.111 55.000 4.59 0.00 45.16 3.67
3669 4833 1.344942 GCTCAAGCACACGTACCTCG 61.345 60.000 0.00 0.00 42.46 4.63
3688 4852 2.359107 CTTGGCCTCGCTTGAGCA 60.359 61.111 3.32 0.00 42.21 4.26
3691 4855 0.895100 TTGGCCTCGCTTGAGCATTT 60.895 50.000 3.32 0.00 42.21 2.32
3693 4857 1.431036 GCCTCGCTTGAGCATTTCC 59.569 57.895 3.65 0.00 42.21 3.13
3699 4863 0.449388 GCTTGAGCATTTCCTCACGG 59.551 55.000 0.00 0.00 41.28 4.94
3700 4864 1.945819 GCTTGAGCATTTCCTCACGGA 60.946 52.381 0.00 0.00 41.28 4.69
3704 4868 0.392193 AGCATTTCCTCACGGAGCAG 60.392 55.000 0.00 0.00 41.25 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.330900 AGAAGAAGAATGGTGATGCAAATAG 57.669 36.000 0.00 0.00 0.00 1.73
6 7 5.647225 AGAAGAAGAAGAAGAATGGTGATGC 59.353 40.000 0.00 0.00 0.00 3.91
8 9 7.688343 AGAAGAAGAAGAAGAAGAATGGTGAT 58.312 34.615 0.00 0.00 0.00 3.06
9 10 7.072263 AGAAGAAGAAGAAGAAGAATGGTGA 57.928 36.000 0.00 0.00 0.00 4.02
10 11 7.661027 AGAAGAAGAAGAAGAAGAAGAATGGTG 59.339 37.037 0.00 0.00 0.00 4.17
11 12 7.744733 AGAAGAAGAAGAAGAAGAAGAATGGT 58.255 34.615 0.00 0.00 0.00 3.55
12 13 8.620116 AAGAAGAAGAAGAAGAAGAAGAATGG 57.380 34.615 0.00 0.00 0.00 3.16
13 14 9.492973 AGAAGAAGAAGAAGAAGAAGAAGAATG 57.507 33.333 0.00 0.00 0.00 2.67
15 16 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
16 17 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
17 18 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
18 19 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
19 20 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
20 21 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
21 22 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
22 23 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
23 24 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
24 25 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
25 26 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
26 27 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
27 28 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
28 29 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
29 30 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
30 31 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
31 32 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
32 33 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
33 34 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
34 35 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
35 36 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
36 37 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
37 38 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
38 39 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
39 40 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
40 41 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
41 42 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
42 43 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
43 44 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
44 45 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
45 46 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
46 47 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
47 48 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
48 49 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
49 50 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
50 51 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
51 52 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
52 53 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
53 54 8.981647 CAGAAGAAGAAGAAGAAGAAGAAGAAG 58.018 37.037 0.00 0.00 0.00 2.85
54 55 7.440856 GCAGAAGAAGAAGAAGAAGAAGAAGAA 59.559 37.037 0.00 0.00 0.00 2.52
55 56 6.928492 GCAGAAGAAGAAGAAGAAGAAGAAGA 59.072 38.462 0.00 0.00 0.00 2.87
56 57 6.147656 GGCAGAAGAAGAAGAAGAAGAAGAAG 59.852 42.308 0.00 0.00 0.00 2.85
57 58 5.994668 GGCAGAAGAAGAAGAAGAAGAAGAA 59.005 40.000 0.00 0.00 0.00 2.52
58 59 5.306678 AGGCAGAAGAAGAAGAAGAAGAAGA 59.693 40.000 0.00 0.00 0.00 2.87
59 60 5.550290 AGGCAGAAGAAGAAGAAGAAGAAG 58.450 41.667 0.00 0.00 0.00 2.85
85 93 2.228822 GGAATCCAATGCGACAAGTTGT 59.771 45.455 8.61 8.61 0.00 3.32
128 136 6.458751 CCGATTGAAGATTACAGACCCATTTG 60.459 42.308 0.00 0.00 0.00 2.32
222 291 2.159212 TCCCATCAATTTTGCATCGCTG 60.159 45.455 0.00 0.00 0.00 5.18
346 426 8.095792 TGCTATAGAGTAGTAGTGGTACATCTC 58.904 40.741 3.21 0.00 44.52 2.75
376 746 2.419324 CTCTGCAAGGCATGTTCTTCTC 59.581 50.000 0.00 0.00 38.13 2.87
393 763 6.309980 CAGCACAGTGAAGTTAATCTACTCTG 59.690 42.308 4.15 0.00 0.00 3.35
469 854 5.655090 TGAGTAAATCAGAACCGATGGAGTA 59.345 40.000 0.00 0.00 32.77 2.59
471 856 5.011090 TGAGTAAATCAGAACCGATGGAG 57.989 43.478 0.00 0.00 32.77 3.86
472 857 5.614324 ATGAGTAAATCAGAACCGATGGA 57.386 39.130 0.00 0.00 42.53 3.41
473 858 5.586243 ACAATGAGTAAATCAGAACCGATGG 59.414 40.000 0.00 0.00 42.53 3.51
474 859 6.457392 CCACAATGAGTAAATCAGAACCGATG 60.457 42.308 0.00 0.00 42.53 3.84
475 860 5.586243 CCACAATGAGTAAATCAGAACCGAT 59.414 40.000 0.00 0.00 42.53 4.18
476 861 4.935205 CCACAATGAGTAAATCAGAACCGA 59.065 41.667 0.00 0.00 42.53 4.69
477 862 4.695455 ACCACAATGAGTAAATCAGAACCG 59.305 41.667 0.00 0.00 42.53 4.44
478 863 6.575162 AACCACAATGAGTAAATCAGAACC 57.425 37.500 0.00 0.00 42.53 3.62
479 864 9.959749 TTAAAACCACAATGAGTAAATCAGAAC 57.040 29.630 0.00 0.00 42.53 3.01
506 891 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
507 892 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
508 893 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
509 894 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
510 895 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
511 896 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
512 897 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
513 898 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
514 899 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
515 900 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
516 901 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
517 902 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
518 903 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
519 904 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
520 905 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
521 906 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
522 907 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
523 908 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
524 909 2.267188 TTCCGATTTACTCGTCGTGG 57.733 50.000 0.00 0.00 46.18 4.94
525 910 3.001070 CACATTCCGATTTACTCGTCGTG 60.001 47.826 0.00 0.00 46.18 4.35
526 911 3.176708 CACATTCCGATTTACTCGTCGT 58.823 45.455 0.00 0.00 46.18 4.34
527 912 2.534349 CCACATTCCGATTTACTCGTCG 59.466 50.000 0.00 0.00 46.18 5.12
528 913 3.777478 TCCACATTCCGATTTACTCGTC 58.223 45.455 0.00 0.00 46.18 4.20
529 914 3.430374 CCTCCACATTCCGATTTACTCGT 60.430 47.826 0.00 0.00 46.18 4.18
531 916 3.134081 TCCCTCCACATTCCGATTTACTC 59.866 47.826 0.00 0.00 0.00 2.59
532 917 3.112263 TCCCTCCACATTCCGATTTACT 58.888 45.455 0.00 0.00 0.00 2.24
533 918 3.118371 ACTCCCTCCACATTCCGATTTAC 60.118 47.826 0.00 0.00 0.00 2.01
534 919 3.112263 ACTCCCTCCACATTCCGATTTA 58.888 45.455 0.00 0.00 0.00 1.40
535 920 1.916181 ACTCCCTCCACATTCCGATTT 59.084 47.619 0.00 0.00 0.00 2.17
536 921 1.584724 ACTCCCTCCACATTCCGATT 58.415 50.000 0.00 0.00 0.00 3.34
537 922 2.320781 CTACTCCCTCCACATTCCGAT 58.679 52.381 0.00 0.00 0.00 4.18
538 923 1.688311 CCTACTCCCTCCACATTCCGA 60.688 57.143 0.00 0.00 0.00 4.55
539 924 0.753262 CCTACTCCCTCCACATTCCG 59.247 60.000 0.00 0.00 0.00 4.30
540 925 1.880941 ACCTACTCCCTCCACATTCC 58.119 55.000 0.00 0.00 0.00 3.01
541 926 2.966516 CCTACCTACTCCCTCCACATTC 59.033 54.545 0.00 0.00 0.00 2.67
542 927 2.590611 TCCTACCTACTCCCTCCACATT 59.409 50.000 0.00 0.00 0.00 2.71
543 928 2.224077 TCCTACCTACTCCCTCCACAT 58.776 52.381 0.00 0.00 0.00 3.21
544 929 1.690010 TCCTACCTACTCCCTCCACA 58.310 55.000 0.00 0.00 0.00 4.17
545 930 2.292061 TGTTCCTACCTACTCCCTCCAC 60.292 54.545 0.00 0.00 0.00 4.02
546 931 2.005350 TGTTCCTACCTACTCCCTCCA 58.995 52.381 0.00 0.00 0.00 3.86
547 932 2.765135 GTTGTTCCTACCTACTCCCTCC 59.235 54.545 0.00 0.00 0.00 4.30
548 933 3.438183 TGTTGTTCCTACCTACTCCCTC 58.562 50.000 0.00 0.00 0.00 4.30
549 934 3.555117 TGTTGTTCCTACCTACTCCCT 57.445 47.619 0.00 0.00 0.00 4.20
550 935 4.383880 GGAATGTTGTTCCTACCTACTCCC 60.384 50.000 0.00 0.00 35.73 4.30
551 936 4.224370 TGGAATGTTGTTCCTACCTACTCC 59.776 45.833 8.17 0.00 39.31 3.85
552 937 5.046520 AGTGGAATGTTGTTCCTACCTACTC 60.047 44.000 8.17 0.00 39.31 2.59
553 938 4.844655 AGTGGAATGTTGTTCCTACCTACT 59.155 41.667 8.17 0.76 39.31 2.57
554 939 5.161943 AGTGGAATGTTGTTCCTACCTAC 57.838 43.478 8.17 0.00 39.31 3.18
555 940 4.081862 CGAGTGGAATGTTGTTCCTACCTA 60.082 45.833 8.17 0.00 39.31 3.08
556 941 3.306780 CGAGTGGAATGTTGTTCCTACCT 60.307 47.826 8.17 2.23 39.31 3.08
557 942 3.000727 CGAGTGGAATGTTGTTCCTACC 58.999 50.000 8.17 0.00 39.31 3.18
609 1035 3.036075 ACTACAGTGTTTAAGGACGGC 57.964 47.619 0.00 0.00 0.00 5.68
632 1060 2.104111 CCCATTCCCGCAGTGTAAGATA 59.896 50.000 0.00 0.00 0.00 1.98
672 1101 1.100510 GGTTAATTTCGCTCCACCCC 58.899 55.000 0.00 0.00 0.00 4.95
735 1257 3.126073 GCAGAAGCAAAAAGGGTTCAAG 58.874 45.455 7.70 1.77 45.29 3.02
736 1258 2.765699 AGCAGAAGCAAAAAGGGTTCAA 59.234 40.909 7.70 0.00 45.29 2.69
738 1260 3.068732 AGAAGCAGAAGCAAAAAGGGTTC 59.931 43.478 0.00 0.00 45.49 3.62
739 1261 3.033909 AGAAGCAGAAGCAAAAAGGGTT 58.966 40.909 0.00 0.00 45.49 4.11
740 1262 2.670939 AGAAGCAGAAGCAAAAAGGGT 58.329 42.857 0.00 0.00 45.49 4.34
742 1264 2.798847 GCAAGAAGCAGAAGCAAAAAGG 59.201 45.455 0.00 0.00 45.49 3.11
780 1307 7.703058 AAAAGGGTTCAATACGAATCAGATT 57.297 32.000 0.00 0.00 36.35 2.40
788 1315 4.023536 GTGCAGAAAAAGGGTTCAATACGA 60.024 41.667 0.00 0.00 0.00 3.43
808 1340 3.540314 ACCATGATCTCTCTCTTGTGC 57.460 47.619 0.00 0.00 0.00 4.57
811 1346 5.359292 TCTGTGTACCATGATCTCTCTCTTG 59.641 44.000 0.00 0.00 0.00 3.02
836 1397 5.332743 TCCTAAAGCTTCCATGTTCCATTT 58.667 37.500 0.00 0.00 0.00 2.32
872 1440 3.741249 TGGATCGAGTAAGTAGATCGCT 58.259 45.455 0.00 0.00 41.06 4.93
918 1495 1.895131 GTGGCTCAAATGATTGTGGGT 59.105 47.619 0.00 0.00 37.79 4.51
933 1510 1.909781 CAGTGCAAATGGGGTGGCT 60.910 57.895 0.00 0.00 0.00 4.75
965 1543 3.330701 AGAAGAGAGTGAGAGAGTGAGGT 59.669 47.826 0.00 0.00 0.00 3.85
966 1544 3.941483 GAGAAGAGAGTGAGAGAGTGAGG 59.059 52.174 0.00 0.00 0.00 3.86
970 1548 4.780021 AGAGAGAGAAGAGAGTGAGAGAGT 59.220 45.833 0.00 0.00 0.00 3.24
978 1557 6.257994 AGATCATGAGAGAGAGAAGAGAGT 57.742 41.667 0.09 0.00 0.00 3.24
1198 2262 7.779798 TCAAGGGATCCAAGAAATAGTTTATGG 59.220 37.037 15.23 2.51 33.34 2.74
2056 3201 5.258456 TCAACTACAACGTCTTCTTGTCT 57.742 39.130 0.00 0.00 33.79 3.41
2057 3202 5.961395 TTCAACTACAACGTCTTCTTGTC 57.039 39.130 0.00 0.00 33.79 3.18
2059 3204 6.201044 AGTGATTCAACTACAACGTCTTCTTG 59.799 38.462 0.00 0.00 0.00 3.02
2060 3205 6.281405 AGTGATTCAACTACAACGTCTTCTT 58.719 36.000 0.00 0.00 0.00 2.52
2061 3206 5.844004 AGTGATTCAACTACAACGTCTTCT 58.156 37.500 0.00 0.00 0.00 2.85
2062 3207 5.921408 AGAGTGATTCAACTACAACGTCTTC 59.079 40.000 0.00 0.00 0.00 2.87
2086 3231 2.879233 GCCGTGTGAGGGGAGTTGA 61.879 63.158 0.00 0.00 0.00 3.18
2087 3232 2.358737 GCCGTGTGAGGGGAGTTG 60.359 66.667 0.00 0.00 0.00 3.16
2098 3243 1.566018 GCTTAACTTCAGCGCCGTGT 61.566 55.000 2.29 0.00 0.00 4.49
2099 3244 1.132640 GCTTAACTTCAGCGCCGTG 59.867 57.895 2.29 0.00 0.00 4.94
2100 3245 1.004918 AGCTTAACTTCAGCGCCGT 60.005 52.632 2.29 0.00 42.55 5.68
2101 3246 1.014044 TGAGCTTAACTTCAGCGCCG 61.014 55.000 2.29 0.00 42.55 6.46
2102 3247 1.135944 GTTGAGCTTAACTTCAGCGCC 60.136 52.381 13.77 0.00 42.55 6.53
2103 3248 1.801178 AGTTGAGCTTAACTTCAGCGC 59.199 47.619 17.56 0.00 42.55 5.92
2104 3249 4.238514 AGTAGTTGAGCTTAACTTCAGCG 58.761 43.478 26.64 0.00 42.55 5.18
2105 3250 6.391537 AGTAGTAGTTGAGCTTAACTTCAGC 58.608 40.000 26.64 17.46 41.01 4.26
2106 3251 8.732531 AGTAGTAGTAGTTGAGCTTAACTTCAG 58.267 37.037 26.64 0.00 41.01 3.02
2107 3252 8.632906 AGTAGTAGTAGTTGAGCTTAACTTCA 57.367 34.615 26.64 9.29 41.01 3.02
2108 3253 9.986833 GTAGTAGTAGTAGTTGAGCTTAACTTC 57.013 37.037 26.64 21.52 41.01 3.01
2114 3259 9.816354 GTAGTAGTAGTAGTAGTAGTTGAGCTT 57.184 37.037 5.31 0.00 0.00 3.74
2115 3260 9.200817 AGTAGTAGTAGTAGTAGTAGTTGAGCT 57.799 37.037 5.31 0.00 0.00 4.09
2138 3283 5.850557 ACTCGAGTGCTACTAGTAGAGTA 57.149 43.478 30.09 14.30 39.81 2.59
2139 3284 4.741321 ACTCGAGTGCTACTAGTAGAGT 57.259 45.455 30.09 20.37 42.69 3.24
2140 3285 6.292488 GCTTAACTCGAGTGCTACTAGTAGAG 60.292 46.154 30.09 19.80 35.21 2.43
2141 3286 5.523188 GCTTAACTCGAGTGCTACTAGTAGA 59.477 44.000 30.09 14.35 35.21 2.59
2142 3287 5.524646 AGCTTAACTCGAGTGCTACTAGTAG 59.475 44.000 23.07 23.25 36.29 2.57
2143 3288 5.426504 AGCTTAACTCGAGTGCTACTAGTA 58.573 41.667 23.07 6.22 31.71 1.82
2144 3289 4.263435 AGCTTAACTCGAGTGCTACTAGT 58.737 43.478 23.07 7.17 31.71 2.57
2157 3302 2.937433 GCTGAGGGGTTGAGCTTAACTC 60.937 54.545 19.51 16.33 46.45 3.01
2162 3307 1.682257 GAGCTGAGGGGTTGAGCTT 59.318 57.895 0.00 0.00 43.18 3.74
2185 3330 2.105960 GAGAGAGAGAGCGAGCGAGC 62.106 65.000 0.00 0.00 37.41 5.03
2189 3348 1.202580 AGAGAGAGAGAGAGAGCGAGC 60.203 57.143 0.00 0.00 0.00 5.03
2644 3803 2.030805 GCAAGCTAGTCACCAAAACAGG 60.031 50.000 0.00 0.00 0.00 4.00
2660 3819 3.730761 CCGTGTGAGGCAGCAAGC 61.731 66.667 0.00 0.00 44.65 4.01
2698 3857 3.923017 AAGGCAAACTTGTAGTGCATC 57.077 42.857 0.00 0.00 40.12 3.91
2714 3873 7.415653 GCCTTGTATGCCTATCATTTATAAGGC 60.416 40.741 11.32 11.32 41.91 4.35
2756 3915 4.640201 TGTCAGTTTGAGAAACCAGAAAGG 59.360 41.667 0.00 0.00 42.34 3.11
2760 3919 6.826231 TGTTTATGTCAGTTTGAGAAACCAGA 59.174 34.615 0.00 0.00 42.34 3.86
2762 3921 7.284261 TCATGTTTATGTCAGTTTGAGAAACCA 59.716 33.333 0.00 0.00 37.54 3.67
2769 3928 7.416817 CACACTTCATGTTTATGTCAGTTTGA 58.583 34.615 0.00 0.00 40.64 2.69
2788 3947 1.958288 ACTGGGATCTAGCCACACTT 58.042 50.000 0.00 0.00 0.00 3.16
2849 4010 3.737972 CGCCCTGCACTTTTTCTTTCTTT 60.738 43.478 0.00 0.00 0.00 2.52
2908 4069 2.040544 GTGCCAATGTCGGGGTGAG 61.041 63.158 0.00 0.00 0.00 3.51
2914 4075 3.061848 GGTGGGTGCCAATGTCGG 61.062 66.667 0.00 0.00 34.18 4.79
2957 4118 3.762247 CCAATGTGGGCCGCCAAG 61.762 66.667 15.75 3.65 32.67 3.61
2958 4119 4.612279 ACCAATGTGGGCCGCCAA 62.612 61.111 15.75 0.00 43.37 4.52
2986 4147 1.298667 CCCCTGGGGTCTGTAAACG 59.701 63.158 24.54 0.00 38.25 3.60
3001 4162 2.579684 AAGCTTCTCATCGTCGCCCC 62.580 60.000 0.00 0.00 0.00 5.80
3048 4209 4.476410 TCCTGCGCTCGTGCTACG 62.476 66.667 9.73 2.79 44.19 3.51
3049 4210 2.881352 GTCCTGCGCTCGTGCTAC 60.881 66.667 9.73 0.26 36.97 3.58
3050 4211 4.129737 GGTCCTGCGCTCGTGCTA 62.130 66.667 9.73 0.00 36.97 3.49
3053 4214 3.190849 CATGGTCCTGCGCTCGTG 61.191 66.667 9.73 1.21 0.00 4.35
3054 4215 4.457496 CCATGGTCCTGCGCTCGT 62.457 66.667 9.73 0.00 0.00 4.18
3056 4217 3.984193 AAGCCATGGTCCTGCGCTC 62.984 63.158 14.67 0.00 0.00 5.03
3057 4218 4.039092 AAGCCATGGTCCTGCGCT 62.039 61.111 14.67 0.00 0.00 5.92
3058 4219 3.818787 CAAGCCATGGTCCTGCGC 61.819 66.667 14.67 0.00 0.00 6.09
3059 4220 2.360350 ACAAGCCATGGTCCTGCG 60.360 61.111 14.67 0.91 0.00 5.18
3060 4221 2.345760 CCACAAGCCATGGTCCTGC 61.346 63.158 14.67 0.00 32.08 4.85
3061 4222 1.679977 CCCACAAGCCATGGTCCTG 60.680 63.158 14.67 10.67 35.23 3.86
3062 4223 2.162906 ACCCACAAGCCATGGTCCT 61.163 57.895 14.67 0.00 35.23 3.85
3063 4224 1.978617 CACCCACAAGCCATGGTCC 60.979 63.158 14.67 0.00 35.23 4.46
3064 4225 1.978617 CCACCCACAAGCCATGGTC 60.979 63.158 14.67 5.80 35.23 4.02
3065 4226 2.118076 CCACCCACAAGCCATGGT 59.882 61.111 14.67 0.00 35.23 3.55
3066 4227 3.384532 GCCACCCACAAGCCATGG 61.385 66.667 7.63 7.63 36.94 3.66
3067 4228 2.208619 TTGCCACCCACAAGCCATG 61.209 57.895 0.00 0.00 0.00 3.66
3068 4229 2.200930 TTGCCACCCACAAGCCAT 59.799 55.556 0.00 0.00 0.00 4.40
3069 4230 2.837291 GTTGCCACCCACAAGCCA 60.837 61.111 0.00 0.00 0.00 4.75
3070 4231 1.685355 AAAGTTGCCACCCACAAGCC 61.685 55.000 0.00 0.00 0.00 4.35
3071 4232 1.036707 TAAAGTTGCCACCCACAAGC 58.963 50.000 0.00 0.00 0.00 4.01
3072 4233 2.428890 TGTTAAAGTTGCCACCCACAAG 59.571 45.455 0.00 0.00 0.00 3.16
3073 4234 2.457598 TGTTAAAGTTGCCACCCACAA 58.542 42.857 0.00 0.00 0.00 3.33
3074 4235 2.145397 TGTTAAAGTTGCCACCCACA 57.855 45.000 0.00 0.00 0.00 4.17
3075 4236 2.288763 CCATGTTAAAGTTGCCACCCAC 60.289 50.000 0.00 0.00 0.00 4.61
3076 4237 1.967066 CCATGTTAAAGTTGCCACCCA 59.033 47.619 0.00 0.00 0.00 4.51
3077 4238 1.967779 ACCATGTTAAAGTTGCCACCC 59.032 47.619 0.00 0.00 0.00 4.61
3078 4239 2.625790 TGACCATGTTAAAGTTGCCACC 59.374 45.455 0.00 0.00 0.00 4.61
3079 4240 3.317993 AGTGACCATGTTAAAGTTGCCAC 59.682 43.478 0.00 0.00 0.00 5.01
3080 4241 3.561143 AGTGACCATGTTAAAGTTGCCA 58.439 40.909 0.00 0.00 0.00 4.92
3081 4242 4.584327 AAGTGACCATGTTAAAGTTGCC 57.416 40.909 0.00 0.00 0.00 4.52
3082 4243 5.276820 GCAAAAGTGACCATGTTAAAGTTGC 60.277 40.000 0.00 0.00 0.00 4.17
3083 4244 5.051774 CGCAAAAGTGACCATGTTAAAGTTG 60.052 40.000 0.00 0.00 0.00 3.16
3084 4245 5.040635 CGCAAAAGTGACCATGTTAAAGTT 58.959 37.500 0.00 0.00 0.00 2.66
3085 4246 4.499019 CCGCAAAAGTGACCATGTTAAAGT 60.499 41.667 0.00 0.00 0.00 2.66
3086 4247 3.980775 CCGCAAAAGTGACCATGTTAAAG 59.019 43.478 0.00 0.00 0.00 1.85
3087 4248 3.632604 TCCGCAAAAGTGACCATGTTAAA 59.367 39.130 0.00 0.00 0.00 1.52
3088 4249 3.215151 TCCGCAAAAGTGACCATGTTAA 58.785 40.909 0.00 0.00 0.00 2.01
3089 4250 2.811431 CTCCGCAAAAGTGACCATGTTA 59.189 45.455 0.00 0.00 0.00 2.41
3090 4251 1.608590 CTCCGCAAAAGTGACCATGTT 59.391 47.619 0.00 0.00 0.00 2.71
3091 4252 1.238439 CTCCGCAAAAGTGACCATGT 58.762 50.000 0.00 0.00 0.00 3.21
3092 4253 0.523072 CCTCCGCAAAAGTGACCATG 59.477 55.000 0.00 0.00 0.00 3.66
3093 4254 0.400213 TCCTCCGCAAAAGTGACCAT 59.600 50.000 0.00 0.00 0.00 3.55
3094 4255 0.534203 GTCCTCCGCAAAAGTGACCA 60.534 55.000 0.00 0.00 0.00 4.02
3095 4256 0.534203 TGTCCTCCGCAAAAGTGACC 60.534 55.000 0.00 0.00 0.00 4.02
3096 4257 1.264288 CTTGTCCTCCGCAAAAGTGAC 59.736 52.381 0.00 0.00 0.00 3.67
3097 4258 1.140052 TCTTGTCCTCCGCAAAAGTGA 59.860 47.619 0.00 0.00 0.00 3.41
3098 4259 1.593196 TCTTGTCCTCCGCAAAAGTG 58.407 50.000 0.00 0.00 0.00 3.16
3103 4264 2.270352 ATTGTTCTTGTCCTCCGCAA 57.730 45.000 0.00 0.00 0.00 4.85
3113 4274 4.142687 CGGTGGTTAAGCCTATTGTTCTTG 60.143 45.833 1.51 0.00 38.35 3.02
3114 4275 4.007659 CGGTGGTTAAGCCTATTGTTCTT 58.992 43.478 1.51 0.00 38.35 2.52
3137 4301 0.886490 GCCGGAAGCGGATCATGATT 60.886 55.000 10.14 0.00 0.00 2.57
3153 4317 1.775039 ATGTCCGCGATGAAATGCCG 61.775 55.000 8.23 0.00 0.00 5.69
3157 4321 1.134401 ACTCCATGTCCGCGATGAAAT 60.134 47.619 8.23 0.00 0.00 2.17
3194 4358 1.067974 CAGGTATAACGCCGACCATGA 59.932 52.381 0.00 0.00 35.56 3.07
3280 4444 0.458716 GCAACTAGGCAGAGACGACC 60.459 60.000 0.00 0.00 0.00 4.79
3314 4478 1.609072 TGGTCAGACACTGTCGAGAAG 59.391 52.381 2.17 0.00 37.67 2.85
3377 4541 1.529438 CGCTCAAAGTGGAAGCGTTTA 59.471 47.619 7.75 0.00 43.00 2.01
3393 4557 3.190535 TCCAACTAAATCCAAAAGCGCTC 59.809 43.478 12.06 0.00 0.00 5.03
3405 4569 7.238710 ACCTCAATGTAACCTTCCAACTAAAT 58.761 34.615 0.00 0.00 0.00 1.40
3406 4570 6.607019 ACCTCAATGTAACCTTCCAACTAAA 58.393 36.000 0.00 0.00 0.00 1.85
3408 4572 5.836024 ACCTCAATGTAACCTTCCAACTA 57.164 39.130 0.00 0.00 0.00 2.24
3416 4580 3.497942 GGGACACAACCTCAATGTAACCT 60.498 47.826 0.00 0.00 0.00 3.50
3420 4584 2.039746 CCTGGGACACAACCTCAATGTA 59.960 50.000 0.00 0.00 0.00 2.29
3425 4589 0.923358 AAACCTGGGACACAACCTCA 59.077 50.000 0.00 0.00 0.00 3.86
3455 4619 3.917760 GGATCGGGGTCTGGCTCG 61.918 72.222 0.00 0.00 0.00 5.03
3485 4649 4.328440 GCTGTAGCATTAAGGCGATCATAG 59.672 45.833 6.44 3.04 41.59 2.23
3495 4659 0.373370 TTGCGCGCTGTAGCATTAAG 59.627 50.000 33.29 0.00 43.42 1.85
3522 4686 0.684805 ATCTTCCTCGCCCTCGAACT 60.685 55.000 0.00 0.00 44.98 3.01
3526 4690 2.419198 CCATCTTCCTCGCCCTCG 59.581 66.667 0.00 0.00 0.00 4.63
3530 4694 4.918201 CCGCCCATCTTCCTCGCC 62.918 72.222 0.00 0.00 0.00 5.54
3547 4711 1.203287 GCAAAAGTTGGAGGGAGATGC 59.797 52.381 0.00 0.00 0.00 3.91
3556 4720 1.066908 CGCAGGAAAGCAAAAGTTGGA 59.933 47.619 0.00 0.00 0.00 3.53
3573 4737 1.451927 GGTGGGCAATGATCTCGCA 60.452 57.895 0.00 0.00 0.00 5.10
3584 4748 3.016971 CCCTCATCCAGGTGGGCA 61.017 66.667 0.00 0.00 41.51 5.36
3588 4752 1.077212 CTTGCCCCTCATCCAGGTG 60.077 63.158 0.00 0.00 41.51 4.00
3589 4753 1.229951 TCTTGCCCCTCATCCAGGT 60.230 57.895 0.00 0.00 41.51 4.00
3601 4765 2.435059 GTGGCCGAGAGTCTTGCC 60.435 66.667 21.74 21.74 44.27 4.52
3606 4770 2.419739 GGGAGAGTGGCCGAGAGTC 61.420 68.421 0.00 0.00 0.00 3.36
3693 4857 1.144565 CTCGAATGCTGCTCCGTGAG 61.145 60.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.