Multiple sequence alignment - TraesCS7B01G398300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G398300 chr7B 100.000 3444 0 0 1 3444 664399850 664396407 0.000000e+00 6360
1 TraesCS7B01G398300 chr7B 84.365 2245 205 59 400 2594 528873327 528875475 0.000000e+00 2067
2 TraesCS7B01G398300 chr7B 89.220 1512 141 10 1046 2550 73176689 73178185 0.000000e+00 1869
3 TraesCS7B01G398300 chr7B 90.865 208 17 2 2842 3048 158388301 158388095 9.410000e-71 278
4 TraesCS7B01G398300 chr7B 87.209 258 15 9 2592 2844 665203941 665204185 9.410000e-71 278
5 TraesCS7B01G398300 chr7B 86.179 246 24 7 2594 2832 664999023 664999265 1.230000e-64 257
6 TraesCS7B01G398300 chr7B 84.848 264 22 9 2592 2844 664622438 664622694 2.050000e-62 250
7 TraesCS7B01G398300 chr7B 75.809 587 58 36 400 958 73175910 73176440 1.610000e-53 220
8 TraesCS7B01G398300 chr7B 92.453 106 7 1 2740 2844 665281947 665282052 2.140000e-32 150
9 TraesCS7B01G398300 chr7B 83.333 138 21 2 3304 3439 639073356 639073219 3.610000e-25 126
10 TraesCS7B01G398300 chr7B 89.216 102 6 2 210 306 528873075 528873176 4.670000e-24 122
11 TraesCS7B01G398300 chr7B 87.379 103 6 4 210 306 73175607 73175708 1.010000e-20 111
12 TraesCS7B01G398300 chr7D 86.141 2208 165 63 400 2535 500775638 500777776 0.000000e+00 2252
13 TraesCS7B01G398300 chr7D 88.336 1689 148 20 874 2550 113582961 113584612 0.000000e+00 1982
14 TraesCS7B01G398300 chr7D 86.434 258 18 7 2592 2844 590124461 590124706 2.040000e-67 267
15 TraesCS7B01G398300 chr7D 91.489 141 6 1 2681 2821 589661903 589661769 4.540000e-44 189
16 TraesCS7B01G398300 chr7D 90.385 104 6 1 2495 2594 113584612 113584715 2.160000e-27 134
17 TraesCS7B01G398300 chr7D 89.524 105 7 3 2740 2840 590328584 590328688 2.790000e-26 130
18 TraesCS7B01G398300 chr3A 90.746 1621 134 8 987 2594 732404547 732402930 0.000000e+00 2148
19 TraesCS7B01G398300 chr3A 83.000 200 13 10 783 970 732404787 732404597 9.890000e-36 161
20 TraesCS7B01G398300 chr7A 89.874 1669 131 18 956 2594 566910363 566912023 0.000000e+00 2111
21 TraesCS7B01G398300 chr7A 84.175 2237 186 86 400 2594 566789982 566792092 0.000000e+00 2015
22 TraesCS7B01G398300 chr7A 89.815 1571 135 16 956 2509 566989638 566991200 0.000000e+00 1991
23 TraesCS7B01G398300 chr7A 88.190 1287 136 10 1267 2550 619305129 619306402 0.000000e+00 1520
24 TraesCS7B01G398300 chr7A 84.034 357 30 12 304 649 566909729 566910069 5.550000e-83 318
25 TraesCS7B01G398300 chr7A 85.772 246 32 3 406 651 566989086 566989328 1.230000e-64 257
26 TraesCS7B01G398300 chr7A 86.111 180 20 3 783 961 566989434 566989609 4.540000e-44 189
27 TraesCS7B01G398300 chr7A 79.478 268 30 10 2586 2844 681664905 681665156 2.130000e-37 167
28 TraesCS7B01G398300 chr7A 87.255 102 8 2 210 306 566789676 566789777 1.010000e-20 111
29 TraesCS7B01G398300 chr3B 89.319 1629 149 17 986 2594 810194230 810192607 0.000000e+00 2021
30 TraesCS7B01G398300 chr3B 90.016 611 42 8 2844 3440 23400045 23399440 0.000000e+00 773
31 TraesCS7B01G398300 chr3B 87.352 253 20 10 2843 3085 518407307 518407557 2.620000e-71 279
32 TraesCS7B01G398300 chr3B 85.612 278 25 12 2834 3099 518845937 518846211 9.410000e-71 278
33 TraesCS7B01G398300 chr3B 83.871 186 21 5 775 960 806003675 806003499 5.910000e-38 169
34 TraesCS7B01G398300 chrUn 86.013 1866 175 30 686 2509 86611849 86613670 0.000000e+00 1921
35 TraesCS7B01G398300 chrUn 93.519 324 9 2 1 312 86611076 86611399 4.020000e-129 472
36 TraesCS7B01G398300 chrUn 88.630 343 33 5 309 648 86611511 86611850 2.470000e-111 412
37 TraesCS7B01G398300 chrUn 86.194 268 24 11 2843 3099 131579198 131578933 9.410000e-71 278
38 TraesCS7B01G398300 chrUn 85.926 270 23 7 2843 3099 5167784 5168051 1.220000e-69 274
39 TraesCS7B01G398300 chr3D 85.554 1156 140 16 989 2137 598726093 598724958 0.000000e+00 1184
40 TraesCS7B01G398300 chr3D 84.589 292 25 12 415 698 598726661 598726382 4.380000e-69 272
41 TraesCS7B01G398300 chr3D 85.955 178 18 3 783 960 598726319 598726149 2.110000e-42 183
42 TraesCS7B01G398300 chr3D 86.667 135 14 3 3307 3439 537340075 537339943 2.770000e-31 147
43 TraesCS7B01G398300 chr3D 97.561 82 2 0 3215 3296 537340075 537339994 1.290000e-29 141
44 TraesCS7B01G398300 chr5B 89.684 601 42 9 2844 3429 536387112 536386517 0.000000e+00 749
45 TraesCS7B01G398300 chr5B 92.523 107 7 1 3190 3296 344625438 344625333 5.950000e-33 152
46 TraesCS7B01G398300 chr2B 89.198 611 47 9 2844 3440 617954802 617955407 0.000000e+00 745
47 TraesCS7B01G398300 chr2B 85.560 464 46 13 2844 3296 445248975 445248522 1.870000e-127 466
48 TraesCS7B01G398300 chr2B 85.135 148 19 3 3294 3440 445248614 445248469 7.700000e-32 148
49 TraesCS7B01G398300 chr2B 96.341 82 3 0 3215 3296 250061293 250061374 6.000000e-28 135
50 TraesCS7B01G398300 chr2B 84.091 132 18 3 3307 3436 250061293 250061423 1.300000e-24 124
51 TraesCS7B01G398300 chr6D 88.785 214 20 2 2844 3056 23357718 23357508 3.410000e-65 259
52 TraesCS7B01G398300 chr6D 88.785 214 20 2 2844 3056 23372229 23372019 3.410000e-65 259
53 TraesCS7B01G398300 chr5D 87.671 146 15 2 3153 3295 19511090 19511235 2.130000e-37 167
54 TraesCS7B01G398300 chr6B 96.341 82 3 0 3215 3296 690238233 690238152 6.000000e-28 135
55 TraesCS7B01G398300 chr6B 83.704 135 18 3 3307 3439 690238233 690238101 1.300000e-24 124
56 TraesCS7B01G398300 chr5A 83.333 150 18 5 3294 3440 580423435 580423580 7.760000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G398300 chr7B 664396407 664399850 3443 True 6360.000000 6360 100.000000 1 3444 1 chr7B.!!$R3 3443
1 TraesCS7B01G398300 chr7B 528873075 528875475 2400 False 1094.500000 2067 86.790500 210 2594 2 chr7B.!!$F6 2384
2 TraesCS7B01G398300 chr7B 73175607 73178185 2578 False 733.333333 1869 84.136000 210 2550 3 chr7B.!!$F5 2340
3 TraesCS7B01G398300 chr7D 500775638 500777776 2138 False 2252.000000 2252 86.141000 400 2535 1 chr7D.!!$F1 2135
4 TraesCS7B01G398300 chr7D 113582961 113584715 1754 False 1058.000000 1982 89.360500 874 2594 2 chr7D.!!$F4 1720
5 TraesCS7B01G398300 chr3A 732402930 732404787 1857 True 1154.500000 2148 86.873000 783 2594 2 chr3A.!!$R1 1811
6 TraesCS7B01G398300 chr7A 619305129 619306402 1273 False 1520.000000 1520 88.190000 1267 2550 1 chr7A.!!$F1 1283
7 TraesCS7B01G398300 chr7A 566909729 566912023 2294 False 1214.500000 2111 86.954000 304 2594 2 chr7A.!!$F4 2290
8 TraesCS7B01G398300 chr7A 566789676 566792092 2416 False 1063.000000 2015 85.715000 210 2594 2 chr7A.!!$F3 2384
9 TraesCS7B01G398300 chr7A 566989086 566991200 2114 False 812.333333 1991 87.232667 406 2509 3 chr7A.!!$F5 2103
10 TraesCS7B01G398300 chr3B 810192607 810194230 1623 True 2021.000000 2021 89.319000 986 2594 1 chr3B.!!$R3 1608
11 TraesCS7B01G398300 chr3B 23399440 23400045 605 True 773.000000 773 90.016000 2844 3440 1 chr3B.!!$R1 596
12 TraesCS7B01G398300 chrUn 86611076 86613670 2594 False 935.000000 1921 89.387333 1 2509 3 chrUn.!!$F2 2508
13 TraesCS7B01G398300 chr3D 598724958 598726661 1703 True 546.333333 1184 85.366000 415 2137 3 chr3D.!!$R2 1722
14 TraesCS7B01G398300 chr5B 536386517 536387112 595 True 749.000000 749 89.684000 2844 3429 1 chr5B.!!$R2 585
15 TraesCS7B01G398300 chr2B 617954802 617955407 605 False 745.000000 745 89.198000 2844 3440 1 chr2B.!!$F1 596
16 TraesCS7B01G398300 chr2B 445248469 445248975 506 True 307.000000 466 85.347500 2844 3440 2 chr2B.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 1285 0.179205 GCATCGCAGACAAGCACTTC 60.179 55.0 0.0 0.0 42.51 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2707 3436 0.109689 GCTCGTGCTCGTAGTGAAGT 60.11 55.0 8.17 0.0 38.33 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 5.046231 AGGAGTGAAGTATGAAGAGGGAAAC 60.046 44.000 0.00 0.00 0.00 2.78
86 87 3.700863 TTACTAGGGAGTAGGTGGCAT 57.299 47.619 0.00 0.00 39.36 4.40
100 101 4.530875 AGGTGGCATTAGATTGGAAGAAG 58.469 43.478 0.00 0.00 0.00 2.85
119 120 5.537188 AGAAGACACAGATCTTTGACACTC 58.463 41.667 15.71 9.77 39.08 3.51
169 182 9.802039 TCTTAGTTTGGAGTAAAATACATGGTT 57.198 29.630 0.00 0.00 29.43 3.67
239 256 1.956477 AGCATTTCCCGAACATATGGC 59.044 47.619 7.80 0.00 0.00 4.40
398 629 4.386954 GGTTAAGTGCGTACTTAGGTTCAC 59.613 45.833 22.48 17.66 46.80 3.18
413 644 9.705103 ACTTAGGTTCACCATACAGTATAAGTA 57.295 33.333 0.00 0.00 38.89 2.24
428 659 8.368668 ACAGTATAAGTAGCTGTTTTGAAGAGT 58.631 33.333 0.00 0.00 40.13 3.24
430 661 8.808092 AGTATAAGTAGCTGTTTTGAAGAGTCT 58.192 33.333 0.00 0.00 0.00 3.24
482 715 0.721718 CAAGATCGAGGCCAACGTTC 59.278 55.000 18.83 18.86 0.00 3.95
488 724 1.598130 GAGGCCAACGTTCAGCTGT 60.598 57.895 14.67 7.20 0.00 4.40
489 725 1.569479 GAGGCCAACGTTCAGCTGTC 61.569 60.000 14.67 7.56 0.00 3.51
503 758 2.099592 CAGCTGTCACAAAGGCTCAAAA 59.900 45.455 5.25 0.00 32.30 2.44
571 832 2.568623 ACAGCAAAACCGGAGAGAAT 57.431 45.000 9.46 0.00 0.00 2.40
622 897 4.116328 CGAGGCCGACGAGCTGAA 62.116 66.667 17.85 0.00 38.22 3.02
624 899 4.443266 AGGCCGACGAGCTGAAGC 62.443 66.667 0.00 0.00 42.49 3.86
627 902 4.116328 CCGACGAGCTGAAGCCGA 62.116 66.667 16.51 0.00 43.38 5.54
654 935 4.716977 GGGTGGAGGAGGTCGGGT 62.717 72.222 0.00 0.00 0.00 5.28
655 936 3.391382 GGTGGAGGAGGTCGGGTG 61.391 72.222 0.00 0.00 0.00 4.61
656 937 2.283676 GTGGAGGAGGTCGGGTGA 60.284 66.667 0.00 0.00 0.00 4.02
657 938 2.283676 TGGAGGAGGTCGGGTGAC 60.284 66.667 0.00 0.00 44.72 3.67
693 1004 0.985490 GGGAAGAGGGCAGAGGATGT 60.985 60.000 0.00 0.00 0.00 3.06
704 1015 3.005539 AGGATGTGCAGGCCTCGT 61.006 61.111 0.00 0.00 0.00 4.18
754 1075 4.695560 GCTTGGCCACTAACGACT 57.304 55.556 3.88 0.00 0.00 4.18
776 1097 1.029681 CCGTCCATGACTCGTATCCA 58.970 55.000 0.00 0.00 0.00 3.41
801 1137 2.781595 AATCCGTGTCCGACTGTGCC 62.782 60.000 0.00 0.00 35.63 5.01
827 1163 4.176851 GACTCCGGTCGAGGTCGC 62.177 72.222 0.00 0.00 43.57 5.19
829 1165 3.744719 CTCCGGTCGAGGTCGCAA 61.745 66.667 0.00 0.00 39.60 4.85
830 1166 3.966026 CTCCGGTCGAGGTCGCAAC 62.966 68.421 0.00 0.00 39.60 4.17
831 1167 4.052229 CCGGTCGAGGTCGCAACT 62.052 66.667 0.00 0.00 39.60 3.16
832 1168 2.805353 CGGTCGAGGTCGCAACTG 60.805 66.667 0.00 0.00 39.60 3.16
844 1180 1.748879 GCAACTGGCAAGCCCGATA 60.749 57.895 8.89 0.00 43.97 2.92
855 1191 2.225068 AGCCCGATATCGACTTGTTG 57.775 50.000 26.32 7.45 43.02 3.33
882 1229 3.951680 GGTCCGTGGTTCCATAAATTGAT 59.048 43.478 0.00 0.00 0.00 2.57
923 1281 3.880591 GAGCATCGCAGACAAGCA 58.119 55.556 0.00 0.00 42.51 3.91
927 1285 0.179205 GCATCGCAGACAAGCACTTC 60.179 55.000 0.00 0.00 42.51 3.01
965 1370 2.342910 TGGCGAAAGAGTAGAACGAC 57.657 50.000 0.00 0.00 0.00 4.34
967 1372 1.257539 GCGAAAGAGTAGAACGACCG 58.742 55.000 0.00 0.00 0.00 4.79
1039 1453 3.707640 CTCGGCCTCGTCCTCCTCT 62.708 68.421 0.00 0.00 37.69 3.69
1182 1774 2.430244 CCGACCGAACCAGTCACG 60.430 66.667 0.00 0.00 33.70 4.35
1293 1886 6.858478 GCTTCTCAAACTACAAAATTCAGTCC 59.142 38.462 0.00 0.00 0.00 3.85
1478 2108 0.030504 CACGGCAGACAAAACATGCA 59.969 50.000 0.00 0.00 41.78 3.96
1480 2110 1.340889 ACGGCAGACAAAACATGCAAT 59.659 42.857 0.00 0.00 41.78 3.56
1552 2182 2.044650 CACGAGGTCCCCGTCCTA 60.045 66.667 0.00 0.00 38.29 2.94
1567 2197 0.902984 TCCTAGCCAAGCAGGTCGAA 60.903 55.000 0.00 0.00 40.61 3.71
1583 2213 5.932303 CAGGTCGAAACTTTTAGGAAGATGA 59.068 40.000 0.00 0.00 0.00 2.92
1604 2234 0.036164 CAAGGACGGGACCATCACAA 59.964 55.000 0.00 0.00 0.00 3.33
1648 2278 3.068691 CTCGTGGCCTTCTCCGGA 61.069 66.667 2.93 2.93 0.00 5.14
1649 2279 3.358076 CTCGTGGCCTTCTCCGGAC 62.358 68.421 0.00 0.00 0.00 4.79
1672 2327 1.377202 CTATGCAGGCACCGGTGTT 60.377 57.895 33.92 20.71 0.00 3.32
1681 2336 1.248101 GCACCGGTGTTATTGGCCTT 61.248 55.000 33.92 0.00 0.00 4.35
1749 2404 3.963665 TGCATGCACTAGTTTGAACAAC 58.036 40.909 18.46 0.00 0.00 3.32
1817 2476 8.807581 CGCGATGTAGATTAATGCTTATATTGA 58.192 33.333 0.00 0.00 0.00 2.57
1849 2508 5.474532 ACAAAAGAGATTGCAGCTAATGTGA 59.525 36.000 0.00 0.00 33.52 3.58
2057 2716 1.076332 GTGTACACCGCCTTTGCTAG 58.924 55.000 15.42 0.00 34.43 3.42
2108 2775 6.882610 TCTACATGCATTCAAAAGTGTCTT 57.117 33.333 0.00 0.00 0.00 3.01
2160 2829 4.218417 AGATGGGTTTGATTGTGTACTTGC 59.782 41.667 0.00 0.00 0.00 4.01
2165 2834 6.040955 TGGGTTTGATTGTGTACTTGCAATAA 59.959 34.615 0.00 0.00 35.69 1.40
2215 2885 5.008712 GTGCATTAATGTAGGTAAAGGCTCC 59.991 44.000 16.61 0.00 0.00 4.70
2218 2888 3.538634 AATGTAGGTAAAGGCTCCGAC 57.461 47.619 0.00 0.00 0.00 4.79
2289 2959 1.804326 CGAAGGGTTACTGCGGACG 60.804 63.158 0.00 0.00 44.88 4.79
2407 3077 3.559171 GGGAGGCTGTCATGAAACAGTTA 60.559 47.826 14.16 0.00 46.77 2.24
2457 3127 0.179043 GCCTAGGTAGCTGGGCTTTC 60.179 60.000 34.40 12.15 45.89 2.62
2489 3159 6.707608 TGTGTAGATCTTTGTATCCATGATGC 59.292 38.462 0.00 0.00 0.00 3.91
2509 3179 4.854173 TGCCAGCCTTCTGATTGTATTTA 58.146 39.130 0.00 0.00 42.95 1.40
2594 3323 5.689383 TTGCATCTACTTTTGTGAAGACC 57.311 39.130 0.00 0.00 0.00 3.85
2595 3324 4.973168 TGCATCTACTTTTGTGAAGACCT 58.027 39.130 0.00 0.00 0.00 3.85
2596 3325 6.109156 TGCATCTACTTTTGTGAAGACCTA 57.891 37.500 0.00 0.00 0.00 3.08
2597 3326 5.932303 TGCATCTACTTTTGTGAAGACCTAC 59.068 40.000 0.00 0.00 0.00 3.18
2598 3327 6.166982 GCATCTACTTTTGTGAAGACCTACT 58.833 40.000 0.00 0.00 0.00 2.57
2599 3328 7.039293 TGCATCTACTTTTGTGAAGACCTACTA 60.039 37.037 0.00 0.00 0.00 1.82
2600 3329 7.817962 GCATCTACTTTTGTGAAGACCTACTAA 59.182 37.037 0.00 0.00 0.00 2.24
2601 3330 9.706691 CATCTACTTTTGTGAAGACCTACTAAA 57.293 33.333 0.00 0.00 0.00 1.85
2602 3331 9.708092 ATCTACTTTTGTGAAGACCTACTAAAC 57.292 33.333 0.00 0.00 0.00 2.01
2603 3332 8.698210 TCTACTTTTGTGAAGACCTACTAAACA 58.302 33.333 0.00 0.00 0.00 2.83
2604 3333 9.321562 CTACTTTTGTGAAGACCTACTAAACAA 57.678 33.333 0.00 0.00 34.48 2.83
2605 3334 7.982224 ACTTTTGTGAAGACCTACTAAACAAC 58.018 34.615 0.00 0.00 35.36 3.32
2606 3335 7.827729 ACTTTTGTGAAGACCTACTAAACAACT 59.172 33.333 0.00 0.00 35.36 3.16
2607 3336 7.781548 TTTGTGAAGACCTACTAAACAACTC 57.218 36.000 0.00 0.00 35.36 3.01
2608 3337 6.474140 TGTGAAGACCTACTAAACAACTCA 57.526 37.500 0.00 0.00 0.00 3.41
2609 3338 6.278363 TGTGAAGACCTACTAAACAACTCAC 58.722 40.000 0.00 0.00 31.21 3.51
2610 3339 5.401674 GTGAAGACCTACTAAACAACTCACG 59.598 44.000 0.00 0.00 0.00 4.35
2611 3340 5.068198 TGAAGACCTACTAAACAACTCACGT 59.932 40.000 0.00 0.00 0.00 4.49
2612 3341 5.118642 AGACCTACTAAACAACTCACGTC 57.881 43.478 0.00 0.00 0.00 4.34
2613 3342 4.581824 AGACCTACTAAACAACTCACGTCA 59.418 41.667 0.00 0.00 0.00 4.35
2614 3343 5.068198 AGACCTACTAAACAACTCACGTCAA 59.932 40.000 0.00 0.00 0.00 3.18
2615 3344 5.287226 ACCTACTAAACAACTCACGTCAAG 58.713 41.667 0.00 0.00 0.00 3.02
2616 3345 4.684703 CCTACTAAACAACTCACGTCAAGG 59.315 45.833 0.00 0.00 0.00 3.61
2617 3346 3.463944 ACTAAACAACTCACGTCAAGGG 58.536 45.455 0.00 0.00 0.00 3.95
2618 3347 2.702592 AAACAACTCACGTCAAGGGA 57.297 45.000 0.00 0.00 0.00 4.20
2619 3348 1.949465 AACAACTCACGTCAAGGGAC 58.051 50.000 0.00 0.00 40.77 4.46
2620 3349 0.828022 ACAACTCACGTCAAGGGACA 59.172 50.000 0.00 0.00 44.54 4.02
2621 3350 1.208535 ACAACTCACGTCAAGGGACAA 59.791 47.619 0.00 0.00 44.54 3.18
2622 3351 1.597663 CAACTCACGTCAAGGGACAAC 59.402 52.381 0.00 0.00 44.54 3.32
2623 3352 0.249322 ACTCACGTCAAGGGACAACG 60.249 55.000 0.00 0.00 44.54 4.10
2625 3354 4.431035 ACGTCAAGGGACAACGTG 57.569 55.556 0.00 0.00 46.82 4.49
2626 3355 1.817881 ACGTCAAGGGACAACGTGA 59.182 52.632 0.00 0.00 46.82 4.35
2627 3356 0.391597 ACGTCAAGGGACAACGTGAT 59.608 50.000 0.00 0.00 46.82 3.06
2628 3357 1.068474 CGTCAAGGGACAACGTGATC 58.932 55.000 0.00 0.00 44.54 2.92
2629 3358 1.336887 CGTCAAGGGACAACGTGATCT 60.337 52.381 0.00 0.00 44.54 2.75
2630 3359 2.338500 GTCAAGGGACAACGTGATCTC 58.662 52.381 0.00 0.00 43.73 2.75
2631 3360 1.275291 TCAAGGGACAACGTGATCTCC 59.725 52.381 0.00 0.00 0.00 3.71
2632 3361 0.246635 AAGGGACAACGTGATCTCCG 59.753 55.000 0.00 0.00 0.00 4.63
2633 3362 1.810030 GGGACAACGTGATCTCCGC 60.810 63.158 0.00 0.00 0.00 5.54
2634 3363 1.080093 GGACAACGTGATCTCCGCA 60.080 57.895 0.00 0.00 0.00 5.69
2635 3364 0.669318 GGACAACGTGATCTCCGCAA 60.669 55.000 0.00 0.00 0.00 4.85
2636 3365 0.438830 GACAACGTGATCTCCGCAAC 59.561 55.000 0.00 0.00 0.00 4.17
2637 3366 0.949105 ACAACGTGATCTCCGCAACC 60.949 55.000 0.00 0.00 0.00 3.77
2638 3367 0.948623 CAACGTGATCTCCGCAACCA 60.949 55.000 0.00 0.00 0.00 3.67
2639 3368 0.250124 AACGTGATCTCCGCAACCAA 60.250 50.000 0.00 0.00 0.00 3.67
2640 3369 0.250124 ACGTGATCTCCGCAACCAAA 60.250 50.000 5.45 0.00 0.00 3.28
2641 3370 0.443869 CGTGATCTCCGCAACCAAAG 59.556 55.000 0.00 0.00 0.00 2.77
2642 3371 1.808411 GTGATCTCCGCAACCAAAGA 58.192 50.000 0.00 0.00 0.00 2.52
2643 3372 2.359900 GTGATCTCCGCAACCAAAGAT 58.640 47.619 0.00 0.00 0.00 2.40
2644 3373 3.531538 GTGATCTCCGCAACCAAAGATA 58.468 45.455 0.00 0.00 0.00 1.98
2645 3374 3.938963 GTGATCTCCGCAACCAAAGATAA 59.061 43.478 0.00 0.00 0.00 1.75
2646 3375 4.576463 GTGATCTCCGCAACCAAAGATAAT 59.424 41.667 0.00 0.00 0.00 1.28
2647 3376 4.816385 TGATCTCCGCAACCAAAGATAATC 59.184 41.667 0.00 0.00 0.00 1.75
2648 3377 3.541632 TCTCCGCAACCAAAGATAATCC 58.458 45.455 0.00 0.00 0.00 3.01
2649 3378 2.618709 CTCCGCAACCAAAGATAATCCC 59.381 50.000 0.00 0.00 0.00 3.85
2650 3379 1.333619 CCGCAACCAAAGATAATCCCG 59.666 52.381 0.00 0.00 0.00 5.14
2651 3380 2.014128 CGCAACCAAAGATAATCCCGT 58.986 47.619 0.00 0.00 0.00 5.28
2652 3381 3.199677 CGCAACCAAAGATAATCCCGTA 58.800 45.455 0.00 0.00 0.00 4.02
2653 3382 3.813166 CGCAACCAAAGATAATCCCGTAT 59.187 43.478 0.00 0.00 0.00 3.06
2654 3383 4.274950 CGCAACCAAAGATAATCCCGTATT 59.725 41.667 0.00 0.00 0.00 1.89
2655 3384 5.560183 CGCAACCAAAGATAATCCCGTATTC 60.560 44.000 0.00 0.00 0.00 1.75
2656 3385 5.531287 GCAACCAAAGATAATCCCGTATTCT 59.469 40.000 0.00 0.00 0.00 2.40
2657 3386 6.293462 GCAACCAAAGATAATCCCGTATTCTC 60.293 42.308 0.00 0.00 0.00 2.87
2658 3387 6.749036 ACCAAAGATAATCCCGTATTCTCT 57.251 37.500 0.00 0.00 33.63 3.10
2659 3388 6.760291 ACCAAAGATAATCCCGTATTCTCTC 58.240 40.000 0.00 0.00 31.63 3.20
2660 3389 6.166982 CCAAAGATAATCCCGTATTCTCTCC 58.833 44.000 0.00 0.00 31.63 3.71
2661 3390 6.166982 CAAAGATAATCCCGTATTCTCTCCC 58.833 44.000 0.00 0.00 31.63 4.30
2662 3391 4.354662 AGATAATCCCGTATTCTCTCCCC 58.645 47.826 0.00 0.00 27.62 4.81
2663 3392 2.489528 AATCCCGTATTCTCTCCCCA 57.510 50.000 0.00 0.00 0.00 4.96
2664 3393 2.489528 ATCCCGTATTCTCTCCCCAA 57.510 50.000 0.00 0.00 0.00 4.12
2665 3394 2.489528 TCCCGTATTCTCTCCCCAAT 57.510 50.000 0.00 0.00 0.00 3.16
2666 3395 3.623466 TCCCGTATTCTCTCCCCAATA 57.377 47.619 0.00 0.00 0.00 1.90
2667 3396 4.141990 TCCCGTATTCTCTCCCCAATAT 57.858 45.455 0.00 0.00 0.00 1.28
2668 3397 5.279562 TCCCGTATTCTCTCCCCAATATA 57.720 43.478 0.00 0.00 0.00 0.86
2669 3398 5.850278 TCCCGTATTCTCTCCCCAATATAT 58.150 41.667 0.00 0.00 0.00 0.86
2670 3399 6.988725 TCCCGTATTCTCTCCCCAATATATA 58.011 40.000 0.00 0.00 0.00 0.86
2671 3400 6.837568 TCCCGTATTCTCTCCCCAATATATAC 59.162 42.308 0.00 0.00 0.00 1.47
2672 3401 6.041751 CCCGTATTCTCTCCCCAATATATACC 59.958 46.154 0.00 0.00 0.00 2.73
2673 3402 6.041751 CCGTATTCTCTCCCCAATATATACCC 59.958 46.154 0.00 0.00 0.00 3.69
2674 3403 6.041751 CGTATTCTCTCCCCAATATATACCCC 59.958 46.154 0.00 0.00 0.00 4.95
2675 3404 5.378165 TTCTCTCCCCAATATATACCCCA 57.622 43.478 0.00 0.00 0.00 4.96
2676 3405 4.960332 TCTCTCCCCAATATATACCCCAG 58.040 47.826 0.00 0.00 0.00 4.45
2677 3406 4.363217 TCTCTCCCCAATATATACCCCAGT 59.637 45.833 0.00 0.00 0.00 4.00
2678 3407 4.695606 TCTCCCCAATATATACCCCAGTC 58.304 47.826 0.00 0.00 0.00 3.51
2679 3408 4.110592 TCTCCCCAATATATACCCCAGTCA 59.889 45.833 0.00 0.00 0.00 3.41
2680 3409 4.172807 TCCCCAATATATACCCCAGTCAC 58.827 47.826 0.00 0.00 0.00 3.67
2681 3410 3.055385 CCCCAATATATACCCCAGTCACG 60.055 52.174 0.00 0.00 0.00 4.35
2682 3411 3.835978 CCCAATATATACCCCAGTCACGA 59.164 47.826 0.00 0.00 0.00 4.35
2683 3412 4.322499 CCCAATATATACCCCAGTCACGAC 60.322 50.000 0.00 0.00 0.00 4.34
2684 3413 4.322499 CCAATATATACCCCAGTCACGACC 60.322 50.000 0.00 0.00 0.00 4.79
2685 3414 2.464796 ATATACCCCAGTCACGACCA 57.535 50.000 0.00 0.00 0.00 4.02
2686 3415 2.234896 TATACCCCAGTCACGACCAA 57.765 50.000 0.00 0.00 0.00 3.67
2687 3416 0.611714 ATACCCCAGTCACGACCAAC 59.388 55.000 0.00 0.00 0.00 3.77
2688 3417 1.474332 TACCCCAGTCACGACCAACC 61.474 60.000 0.00 0.00 0.00 3.77
2689 3418 2.032071 CCCAGTCACGACCAACCC 59.968 66.667 0.00 0.00 0.00 4.11
2690 3419 2.813726 CCCAGTCACGACCAACCCA 61.814 63.158 0.00 0.00 0.00 4.51
2691 3420 1.374947 CCAGTCACGACCAACCCAT 59.625 57.895 0.00 0.00 0.00 4.00
2692 3421 0.955428 CCAGTCACGACCAACCCATG 60.955 60.000 0.00 0.00 0.00 3.66
2701 3430 3.846256 CCAACCCATGGCCATATGA 57.154 52.632 20.30 0.00 43.80 2.15
2702 3431 1.331214 CCAACCCATGGCCATATGAC 58.669 55.000 20.30 0.00 43.80 3.06
2703 3432 1.411359 CCAACCCATGGCCATATGACA 60.411 52.381 20.30 3.33 43.80 3.58
2704 3433 1.958579 CAACCCATGGCCATATGACAG 59.041 52.381 20.30 4.51 0.00 3.51
2705 3434 1.225373 ACCCATGGCCATATGACAGT 58.775 50.000 20.30 6.78 0.00 3.55
2706 3435 1.133699 ACCCATGGCCATATGACAGTG 60.134 52.381 20.30 4.60 0.00 3.66
2707 3436 1.143481 CCCATGGCCATATGACAGTGA 59.857 52.381 20.30 0.00 0.00 3.41
2708 3437 2.224606 CCATGGCCATATGACAGTGAC 58.775 52.381 20.30 0.00 0.00 3.67
2709 3438 2.158711 CCATGGCCATATGACAGTGACT 60.159 50.000 20.30 0.00 0.00 3.41
2710 3439 3.548770 CATGGCCATATGACAGTGACTT 58.451 45.455 20.30 0.00 0.00 3.01
2711 3440 3.266510 TGGCCATATGACAGTGACTTC 57.733 47.619 0.00 0.00 0.00 3.01
2712 3441 2.571202 TGGCCATATGACAGTGACTTCA 59.429 45.455 0.00 0.00 0.00 3.02
2713 3442 2.939103 GGCCATATGACAGTGACTTCAC 59.061 50.000 3.65 0.77 46.77 3.18
2723 3452 1.328439 GTGACTTCACTACGAGCACG 58.672 55.000 0.76 0.76 43.25 5.34
2724 3453 1.069432 GTGACTTCACTACGAGCACGA 60.069 52.381 11.40 0.00 43.25 4.35
2725 3454 1.197036 TGACTTCACTACGAGCACGAG 59.803 52.381 11.40 6.03 42.66 4.18
2726 3455 0.109689 ACTTCACTACGAGCACGAGC 60.110 55.000 11.40 0.00 42.66 5.03
2739 3468 3.837093 CGAGCTCGTGCGTGTAAA 58.163 55.556 27.79 0.00 45.42 2.01
2740 3469 1.696644 CGAGCTCGTGCGTGTAAAG 59.303 57.895 27.79 0.00 45.42 1.85
2741 3470 0.728129 CGAGCTCGTGCGTGTAAAGA 60.728 55.000 27.79 0.00 45.42 2.52
2742 3471 0.985549 GAGCTCGTGCGTGTAAAGAG 59.014 55.000 0.00 0.00 45.42 2.85
2743 3472 0.596577 AGCTCGTGCGTGTAAAGAGA 59.403 50.000 3.48 0.00 45.42 3.10
2744 3473 1.202582 AGCTCGTGCGTGTAAAGAGAT 59.797 47.619 3.48 0.00 45.42 2.75
2745 3474 1.321743 GCTCGTGCGTGTAAAGAGATG 59.678 52.381 0.00 0.00 0.00 2.90
2746 3475 2.596452 CTCGTGCGTGTAAAGAGATGT 58.404 47.619 0.00 0.00 0.00 3.06
2747 3476 2.324860 TCGTGCGTGTAAAGAGATGTG 58.675 47.619 0.00 0.00 0.00 3.21
2748 3477 2.030628 TCGTGCGTGTAAAGAGATGTGA 60.031 45.455 0.00 0.00 0.00 3.58
2749 3478 2.729360 CGTGCGTGTAAAGAGATGTGAA 59.271 45.455 0.00 0.00 0.00 3.18
2750 3479 3.183574 CGTGCGTGTAAAGAGATGTGAAA 59.816 43.478 0.00 0.00 0.00 2.69
2751 3480 4.143115 CGTGCGTGTAAAGAGATGTGAAAT 60.143 41.667 0.00 0.00 0.00 2.17
2752 3481 5.082059 GTGCGTGTAAAGAGATGTGAAATG 58.918 41.667 0.00 0.00 0.00 2.32
2753 3482 4.154015 TGCGTGTAAAGAGATGTGAAATGG 59.846 41.667 0.00 0.00 0.00 3.16
2754 3483 4.437390 GCGTGTAAAGAGATGTGAAATGGG 60.437 45.833 0.00 0.00 0.00 4.00
2755 3484 4.437390 CGTGTAAAGAGATGTGAAATGGGC 60.437 45.833 0.00 0.00 0.00 5.36
2756 3485 4.458989 GTGTAAAGAGATGTGAAATGGGCA 59.541 41.667 0.00 0.00 0.00 5.36
2757 3486 4.458989 TGTAAAGAGATGTGAAATGGGCAC 59.541 41.667 0.00 0.00 36.81 5.01
2770 3499 4.695560 GGCACCAAAGAGTACGCT 57.304 55.556 0.00 0.00 0.00 5.07
2771 3500 2.162716 GGCACCAAAGAGTACGCTG 58.837 57.895 0.00 0.00 0.00 5.18
2772 3501 0.320421 GGCACCAAAGAGTACGCTGA 60.320 55.000 0.00 0.00 0.00 4.26
2773 3502 1.508632 GCACCAAAGAGTACGCTGAA 58.491 50.000 0.00 0.00 0.00 3.02
2774 3503 1.461127 GCACCAAAGAGTACGCTGAAG 59.539 52.381 0.00 0.00 0.00 3.02
2775 3504 2.755650 CACCAAAGAGTACGCTGAAGT 58.244 47.619 0.00 0.00 0.00 3.01
2776 3505 3.859627 GCACCAAAGAGTACGCTGAAGTA 60.860 47.826 0.00 0.00 0.00 2.24
2777 3506 3.921021 CACCAAAGAGTACGCTGAAGTAG 59.079 47.826 0.00 0.00 0.00 2.57
2788 3517 2.440539 CTGAAGTAGCAACGGAGTGT 57.559 50.000 0.00 0.00 45.00 3.55
2789 3518 3.570926 CTGAAGTAGCAACGGAGTGTA 57.429 47.619 0.00 0.00 45.00 2.90
2790 3519 3.243336 CTGAAGTAGCAACGGAGTGTAC 58.757 50.000 0.00 0.00 45.00 2.90
2791 3520 2.248487 GAAGTAGCAACGGAGTGTACG 58.752 52.381 0.00 0.00 45.00 3.67
2792 3521 1.242076 AGTAGCAACGGAGTGTACGT 58.758 50.000 0.00 0.00 45.00 3.57
2793 3522 1.068748 AGTAGCAACGGAGTGTACGTG 60.069 52.381 0.00 0.00 45.00 4.49
2794 3523 0.387622 TAGCAACGGAGTGTACGTGC 60.388 55.000 0.00 0.00 45.00 5.34
2795 3524 2.995450 GCAACGGAGTGTACGTGCG 61.995 63.158 0.00 7.30 45.00 5.34
2796 3525 2.732094 AACGGAGTGTACGTGCGC 60.732 61.111 9.34 9.34 45.00 6.09
2798 3527 4.746951 CGGAGTGTACGTGCGCGA 62.747 66.667 28.73 7.22 42.00 5.87
2799 3528 2.874780 GGAGTGTACGTGCGCGAG 60.875 66.667 28.73 1.97 42.00 5.03
2800 3529 2.175078 GAGTGTACGTGCGCGAGA 59.825 61.111 28.73 11.00 42.00 4.04
2801 3530 1.226323 GAGTGTACGTGCGCGAGAT 60.226 57.895 28.73 6.58 42.00 2.75
2802 3531 1.194896 GAGTGTACGTGCGCGAGATC 61.195 60.000 28.73 13.35 42.00 2.75
2803 3532 2.277057 TGTACGTGCGCGAGATCG 60.277 61.111 28.73 10.73 42.00 3.69
2804 3533 2.022346 GTACGTGCGCGAGATCGA 59.978 61.111 28.73 0.80 43.02 3.59
2805 3534 2.022346 TACGTGCGCGAGATCGAC 59.978 61.111 28.73 0.00 43.02 4.20
2806 3535 2.742738 TACGTGCGCGAGATCGACA 61.743 57.895 28.73 0.24 43.02 4.35
2807 3536 2.243160 TACGTGCGCGAGATCGACAA 62.243 55.000 28.73 0.00 43.02 3.18
2808 3537 2.689766 GTGCGCGAGATCGACAAC 59.310 61.111 12.10 0.00 43.02 3.32
2809 3538 2.874315 TGCGCGAGATCGACAACG 60.874 61.111 12.10 1.07 43.02 4.10
2818 3547 3.028019 TCGACAACGACAGCGCAC 61.028 61.111 11.47 0.00 43.81 5.34
2819 3548 4.394941 CGACAACGACAGCGCACG 62.395 66.667 11.47 15.05 42.48 5.34
2820 3549 4.702826 GACAACGACAGCGCACGC 62.703 66.667 11.47 6.99 42.48 5.34
2830 3559 3.627218 GCGCACGCCGGTATCTTC 61.627 66.667 0.30 0.00 37.44 2.87
2831 3560 2.104331 CGCACGCCGGTATCTTCT 59.896 61.111 1.90 0.00 0.00 2.85
2832 3561 1.944676 CGCACGCCGGTATCTTCTC 60.945 63.158 1.90 0.00 0.00 2.87
2833 3562 1.944676 GCACGCCGGTATCTTCTCG 60.945 63.158 1.90 0.00 0.00 4.04
2834 3563 1.299165 CACGCCGGTATCTTCTCGG 60.299 63.158 1.90 0.00 45.84 4.63
2835 3564 1.751927 ACGCCGGTATCTTCTCGGT 60.752 57.895 1.90 0.00 44.97 4.69
2836 3565 1.318158 ACGCCGGTATCTTCTCGGTT 61.318 55.000 1.90 0.00 44.97 4.44
2837 3566 0.179119 CGCCGGTATCTTCTCGGTTT 60.179 55.000 1.90 0.00 44.97 3.27
2838 3567 1.287425 GCCGGTATCTTCTCGGTTTG 58.713 55.000 1.90 0.00 44.97 2.93
2839 3568 1.405121 GCCGGTATCTTCTCGGTTTGT 60.405 52.381 1.90 0.00 44.97 2.83
2840 3569 2.933928 GCCGGTATCTTCTCGGTTTGTT 60.934 50.000 1.90 0.00 44.97 2.83
2841 3570 2.671396 CCGGTATCTTCTCGGTTTGTTG 59.329 50.000 0.00 0.00 39.04 3.33
2842 3571 2.671396 CGGTATCTTCTCGGTTTGTTGG 59.329 50.000 0.00 0.00 0.00 3.77
2851 3580 1.137282 TCGGTTTGTTGGGGAAAAAGC 59.863 47.619 0.00 0.00 0.00 3.51
2900 3629 1.847328 GGACGAAATGAACCCCCAAT 58.153 50.000 0.00 0.00 0.00 3.16
2910 3639 3.868062 TGAACCCCCAATTCAAAATCCT 58.132 40.909 0.00 0.00 33.16 3.24
2946 3676 1.794714 ACTCTGCAATCCCGGTCTAT 58.205 50.000 0.00 0.00 0.00 1.98
3005 3735 1.837499 GGCCGGCCCACTAGAGTAT 60.837 63.158 36.64 0.00 0.00 2.12
3006 3736 1.408453 GGCCGGCCCACTAGAGTATT 61.408 60.000 36.64 0.00 0.00 1.89
3007 3737 0.468648 GCCGGCCCACTAGAGTATTT 59.531 55.000 18.11 0.00 0.00 1.40
3056 3786 2.358737 GCGCACACCCTGCTTACT 60.359 61.111 0.30 0.00 44.64 2.24
3057 3787 1.079405 GCGCACACCCTGCTTACTA 60.079 57.895 0.30 0.00 44.64 1.82
3146 3887 1.262950 TGATCGAAGCAACAAACCACG 59.737 47.619 0.00 0.00 0.00 4.94
3278 4019 2.295349 GCCCATGTGGAGCTATTGAATG 59.705 50.000 0.00 0.00 37.39 2.67
3376 4119 7.286316 CCATTTGGAGCTATTGAATAGAAGGTT 59.714 37.037 15.98 0.00 37.39 3.50
3381 4124 5.428253 AGCTATTGAATAGAAGGTTCGCAA 58.572 37.500 15.98 0.00 34.77 4.85
3399 4142 7.170828 GGTTCGCAAAAATAAATCTGGAAAAGT 59.829 33.333 0.00 0.00 0.00 2.66
3406 4150 7.544804 AAATAAATCTGGAAAAGTCCTGCTT 57.455 32.000 0.00 0.00 45.22 3.91
3440 4184 1.336517 CGCGACTTGGGTCTTGTTAGA 60.337 52.381 0.00 0.00 40.10 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.934356 TCCTTCCTTTGGCAGTTATCATT 58.066 39.130 0.00 0.00 0.00 2.57
47 48 2.457366 AAACTTACAGTGCGAGAGGG 57.543 50.000 0.00 0.00 0.00 4.30
86 87 7.487822 AGATCTGTGTCTTCTTCCAATCTAA 57.512 36.000 0.00 0.00 0.00 2.10
100 101 2.989840 CCGAGTGTCAAAGATCTGTGTC 59.010 50.000 12.74 7.94 0.00 3.67
119 120 5.634020 ACGTGAAGAGAAGAAAATCTTACCG 59.366 40.000 0.00 0.00 36.73 4.02
169 182 3.499338 TCCGGGACAACTTTCTGTACTA 58.501 45.455 0.00 0.00 30.20 1.82
239 256 4.212143 TCCTCTGACATTTCCTCATGTG 57.788 45.455 0.00 0.00 37.52 3.21
254 272 4.892433 AGTCAACAGACTGAATTCCTCTG 58.108 43.478 20.88 20.88 40.95 3.35
280 299 2.093500 GGGGAATTGCCTTGAAATGGTC 60.093 50.000 16.31 0.00 36.66 4.02
398 629 8.942338 TCAAAACAGCTACTTATACTGTATGG 57.058 34.615 10.51 5.95 43.63 2.74
413 644 2.708325 AGGGAGACTCTTCAAAACAGCT 59.292 45.455 1.74 0.00 0.00 4.24
428 659 3.135712 TCAGTAACAGTTGCAAAGGGAGA 59.864 43.478 0.00 0.00 0.00 3.71
430 661 3.135712 TCTCAGTAACAGTTGCAAAGGGA 59.864 43.478 0.00 0.00 0.00 4.20
482 715 1.311859 TTGAGCCTTTGTGACAGCTG 58.688 50.000 13.48 13.48 35.23 4.24
488 724 4.637483 CTCTGTTTTTGAGCCTTTGTGA 57.363 40.909 0.00 0.00 0.00 3.58
503 758 2.544267 GCACGTTAAGTTCTGCTCTGTT 59.456 45.455 0.00 0.00 0.00 3.16
548 809 3.399330 TCTCTCCGGTTTTGCTGTTAAG 58.601 45.455 0.00 0.00 0.00 1.85
607 882 4.443266 GCTTCAGCTCGTCGGCCT 62.443 66.667 0.00 0.00 38.21 5.19
638 919 3.391382 CACCCGACCTCCTCCACC 61.391 72.222 0.00 0.00 0.00 4.61
639 920 2.283676 TCACCCGACCTCCTCCAC 60.284 66.667 0.00 0.00 0.00 4.02
640 921 2.283676 GTCACCCGACCTCCTCCA 60.284 66.667 0.00 0.00 36.02 3.86
660 941 4.916314 TCCCCTCCTCCGGCGATC 62.916 72.222 9.30 0.00 0.00 3.69
661 942 4.475444 TTCCCCTCCTCCGGCGAT 62.475 66.667 9.30 0.00 0.00 4.58
693 1004 4.056125 CGTCTCACGAGGCCTGCA 62.056 66.667 12.00 0.00 46.05 4.41
704 1015 2.653115 CACCAGCTGCTCGTCTCA 59.347 61.111 8.66 0.00 0.00 3.27
754 1075 1.679680 GATACGAGTCATGGACGGGAA 59.320 52.381 10.53 0.00 37.67 3.97
776 1097 3.132289 ACAGTCGGACACGGATTATTGAT 59.868 43.478 11.27 0.00 41.39 2.57
827 1163 0.947244 GATATCGGGCTTGCCAGTTG 59.053 55.000 14.04 0.46 0.00 3.16
828 1164 0.532862 CGATATCGGGCTTGCCAGTT 60.533 55.000 17.51 7.23 35.37 3.16
829 1165 1.069765 CGATATCGGGCTTGCCAGT 59.930 57.895 17.51 3.51 35.37 4.00
830 1166 0.946221 GTCGATATCGGGCTTGCCAG 60.946 60.000 24.12 9.74 40.29 4.85
831 1167 1.069090 GTCGATATCGGGCTTGCCA 59.931 57.895 24.12 0.00 40.29 4.92
832 1168 0.249911 AAGTCGATATCGGGCTTGCC 60.250 55.000 24.12 2.49 40.29 4.52
844 1180 1.512926 GACCAGCACAACAAGTCGAT 58.487 50.000 0.00 0.00 0.00 3.59
855 1191 2.668550 GGAACCACGGACCAGCAC 60.669 66.667 0.00 0.00 0.00 4.40
923 1281 2.353579 CGAAAAACCAGGAACGTGAAGT 59.646 45.455 0.00 0.00 0.00 3.01
927 1285 2.446282 CAACGAAAAACCAGGAACGTG 58.554 47.619 0.00 0.00 34.36 4.49
998 1403 0.392998 GGCCGGAAGAAGCTTCATCA 60.393 55.000 27.58 0.00 0.00 3.07
1039 1453 2.559698 TTGGGATTCAGAACGAGCAA 57.440 45.000 0.00 0.00 0.00 3.91
1084 1676 1.552799 TTCTTCTGATGGCTGCCGGA 61.553 55.000 14.98 6.77 0.00 5.14
1182 1774 2.537560 CCATTGCCGCGACATCTCC 61.538 63.158 8.23 0.00 0.00 3.71
1345 1964 8.906867 ACCATGAATTACTGGATGAAATTACAG 58.093 33.333 11.71 0.00 37.54 2.74
1347 1966 7.649306 GCACCATGAATTACTGGATGAAATTAC 59.351 37.037 11.71 0.00 36.35 1.89
1349 1968 6.154877 TGCACCATGAATTACTGGATGAAATT 59.845 34.615 11.71 0.00 36.35 1.82
1352 1971 4.598022 TGCACCATGAATTACTGGATGAA 58.402 39.130 11.71 0.71 36.35 2.57
1354 1973 4.581409 TGATGCACCATGAATTACTGGATG 59.419 41.667 11.71 7.84 36.35 3.51
1357 1976 3.695556 TGTGATGCACCATGAATTACTGG 59.304 43.478 0.00 4.57 38.55 4.00
1359 1978 6.534475 AATTGTGATGCACCATGAATTACT 57.466 33.333 0.00 0.00 32.73 2.24
1468 2098 2.542597 CCGGATGGATTGCATGTTTTG 58.457 47.619 0.00 0.00 37.49 2.44
1478 2108 0.552848 AAGGTCATGCCGGATGGATT 59.447 50.000 5.05 0.17 43.70 3.01
1480 2110 0.394216 CAAAGGTCATGCCGGATGGA 60.394 55.000 5.05 0.00 43.70 3.41
1552 2182 0.179018 AAGTTTCGACCTGCTTGGCT 60.179 50.000 0.00 0.00 40.22 4.75
1567 2197 6.595716 CGTCCTTGATCATCTTCCTAAAAGTT 59.404 38.462 0.00 0.00 0.00 2.66
1583 2213 0.541863 GTGATGGTCCCGTCCTTGAT 59.458 55.000 3.15 0.00 0.00 2.57
1604 2234 3.056749 ACGGAGCGACTTAGTTGATTCTT 60.057 43.478 3.39 0.00 0.00 2.52
1630 2260 3.382832 CCGGAGAAGGCCACGAGT 61.383 66.667 5.01 0.00 0.00 4.18
1648 2278 1.079127 GGTGCCTGCATAGTCGTGT 60.079 57.895 0.00 0.00 0.00 4.49
1649 2279 2.167219 CGGTGCCTGCATAGTCGTG 61.167 63.158 0.00 0.00 0.00 4.35
1681 2336 3.384168 ACTCACATCATTGGGGCTACTA 58.616 45.455 0.00 0.00 0.00 1.82
1749 2404 8.656849 AGTTAGTAAGATGCACAAACGAATTAG 58.343 33.333 0.00 0.00 0.00 1.73
1791 2448 8.807581 TCAATATAAGCATTAATCTACATCGCG 58.192 33.333 0.00 0.00 32.17 5.87
1817 2476 5.594926 CTGCAATCTCTTTTGTCACCTTTT 58.405 37.500 0.00 0.00 0.00 2.27
1849 2508 3.647590 ACCCCAAGCTTCAACAATTGATT 59.352 39.130 13.59 0.00 39.84 2.57
2023 2682 2.931969 TGTACACGTCGACGATGTAGAT 59.068 45.455 41.52 20.99 43.02 1.98
2057 2716 1.265095 CTGCCGCATGATCCACAATAC 59.735 52.381 0.00 0.00 0.00 1.89
2289 2959 2.167861 GCGGATGACTCGTCTTGCC 61.168 63.158 0.00 0.00 0.00 4.52
2489 3159 8.682936 ACTATTAAATACAATCAGAAGGCTGG 57.317 34.615 0.00 0.00 42.53 4.85
2580 3309 7.827729 AGTTGTTTAGTAGGTCTTCACAAAAGT 59.172 33.333 0.00 0.00 32.45 2.66
2605 3334 0.249322 ACGTTGTCCCTTGACGTGAG 60.249 55.000 0.00 0.00 46.86 3.51
2606 3335 1.817881 ACGTTGTCCCTTGACGTGA 59.182 52.632 0.00 0.00 46.86 4.35
2607 3336 4.431035 ACGTTGTCCCTTGACGTG 57.569 55.556 0.00 0.00 46.86 4.49
2609 3338 1.068474 GATCACGTTGTCCCTTGACG 58.932 55.000 0.00 0.00 44.86 4.35
2610 3339 2.338500 GAGATCACGTTGTCCCTTGAC 58.662 52.381 0.00 0.00 42.12 3.18
2611 3340 1.275291 GGAGATCACGTTGTCCCTTGA 59.725 52.381 0.00 0.00 0.00 3.02
2612 3341 1.726853 GGAGATCACGTTGTCCCTTG 58.273 55.000 0.00 0.00 0.00 3.61
2613 3342 0.246635 CGGAGATCACGTTGTCCCTT 59.753 55.000 0.00 0.00 0.00 3.95
2614 3343 1.890894 CGGAGATCACGTTGTCCCT 59.109 57.895 0.00 0.00 0.00 4.20
2615 3344 1.810030 GCGGAGATCACGTTGTCCC 60.810 63.158 10.79 0.00 0.00 4.46
2616 3345 0.669318 TTGCGGAGATCACGTTGTCC 60.669 55.000 10.79 0.00 0.00 4.02
2617 3346 0.438830 GTTGCGGAGATCACGTTGTC 59.561 55.000 10.79 0.00 0.00 3.18
2618 3347 0.949105 GGTTGCGGAGATCACGTTGT 60.949 55.000 10.79 0.00 0.00 3.32
2619 3348 0.948623 TGGTTGCGGAGATCACGTTG 60.949 55.000 10.79 0.00 0.00 4.10
2620 3349 0.250124 TTGGTTGCGGAGATCACGTT 60.250 50.000 10.79 0.00 0.00 3.99
2621 3350 0.250124 TTTGGTTGCGGAGATCACGT 60.250 50.000 10.79 0.00 0.00 4.49
2622 3351 0.443869 CTTTGGTTGCGGAGATCACG 59.556 55.000 5.57 5.57 0.00 4.35
2623 3352 1.808411 TCTTTGGTTGCGGAGATCAC 58.192 50.000 0.00 0.00 0.00 3.06
2624 3353 2.787473 ATCTTTGGTTGCGGAGATCA 57.213 45.000 0.00 0.00 0.00 2.92
2625 3354 4.214332 GGATTATCTTTGGTTGCGGAGATC 59.786 45.833 0.00 0.00 31.71 2.75
2626 3355 4.137543 GGATTATCTTTGGTTGCGGAGAT 58.862 43.478 0.00 0.00 33.68 2.75
2627 3356 3.541632 GGATTATCTTTGGTTGCGGAGA 58.458 45.455 0.00 0.00 0.00 3.71
2628 3357 2.618709 GGGATTATCTTTGGTTGCGGAG 59.381 50.000 0.00 0.00 0.00 4.63
2629 3358 2.650322 GGGATTATCTTTGGTTGCGGA 58.350 47.619 0.00 0.00 0.00 5.54
2630 3359 1.333619 CGGGATTATCTTTGGTTGCGG 59.666 52.381 0.00 0.00 0.00 5.69
2631 3360 2.014128 ACGGGATTATCTTTGGTTGCG 58.986 47.619 0.00 0.00 0.00 4.85
2632 3361 5.531287 AGAATACGGGATTATCTTTGGTTGC 59.469 40.000 0.00 0.00 0.00 4.17
2633 3362 6.992715 AGAGAATACGGGATTATCTTTGGTTG 59.007 38.462 4.25 0.00 42.28 3.77
2634 3363 7.138054 AGAGAATACGGGATTATCTTTGGTT 57.862 36.000 4.25 0.00 42.28 3.67
2635 3364 6.239629 GGAGAGAATACGGGATTATCTTTGGT 60.240 42.308 11.20 0.00 44.41 3.67
2636 3365 6.166982 GGAGAGAATACGGGATTATCTTTGG 58.833 44.000 11.20 0.00 44.41 3.28
2637 3366 6.166982 GGGAGAGAATACGGGATTATCTTTG 58.833 44.000 11.20 0.00 44.41 2.77
2638 3367 5.248705 GGGGAGAGAATACGGGATTATCTTT 59.751 44.000 11.20 0.00 44.41 2.52
2639 3368 4.778427 GGGGAGAGAATACGGGATTATCTT 59.222 45.833 11.20 0.00 44.41 2.40
2640 3369 4.202792 TGGGGAGAGAATACGGGATTATCT 60.203 45.833 9.78 9.78 46.52 1.98
2641 3370 4.094476 TGGGGAGAGAATACGGGATTATC 58.906 47.826 0.00 0.00 36.23 1.75
2642 3371 4.141990 TGGGGAGAGAATACGGGATTAT 57.858 45.455 0.00 0.00 0.00 1.28
2643 3372 3.623466 TGGGGAGAGAATACGGGATTA 57.377 47.619 0.00 0.00 0.00 1.75
2644 3373 2.489528 TGGGGAGAGAATACGGGATT 57.510 50.000 0.00 0.00 0.00 3.01
2645 3374 2.489528 TTGGGGAGAGAATACGGGAT 57.510 50.000 0.00 0.00 0.00 3.85
2646 3375 2.489528 ATTGGGGAGAGAATACGGGA 57.510 50.000 0.00 0.00 0.00 5.14
2647 3376 6.041751 GGTATATATTGGGGAGAGAATACGGG 59.958 46.154 0.00 0.00 0.00 5.28
2648 3377 6.041751 GGGTATATATTGGGGAGAGAATACGG 59.958 46.154 0.00 0.00 0.00 4.02
2649 3378 6.041751 GGGGTATATATTGGGGAGAGAATACG 59.958 46.154 0.00 0.00 0.00 3.06
2650 3379 6.906901 TGGGGTATATATTGGGGAGAGAATAC 59.093 42.308 0.00 0.00 0.00 1.89
2651 3380 7.076037 TGGGGTATATATTGGGGAGAGAATA 57.924 40.000 0.00 0.00 0.00 1.75
2652 3381 5.939437 TGGGGTATATATTGGGGAGAGAAT 58.061 41.667 0.00 0.00 0.00 2.40
2653 3382 5.162648 ACTGGGGTATATATTGGGGAGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
2654 3383 4.363217 ACTGGGGTATATATTGGGGAGAGA 59.637 45.833 0.00 0.00 0.00 3.10
2655 3384 4.699994 ACTGGGGTATATATTGGGGAGAG 58.300 47.826 0.00 0.00 0.00 3.20
2656 3385 4.110592 TGACTGGGGTATATATTGGGGAGA 59.889 45.833 0.00 0.00 0.00 3.71
2657 3386 4.225267 GTGACTGGGGTATATATTGGGGAG 59.775 50.000 0.00 0.00 0.00 4.30
2658 3387 4.172807 GTGACTGGGGTATATATTGGGGA 58.827 47.826 0.00 0.00 0.00 4.81
2659 3388 3.055385 CGTGACTGGGGTATATATTGGGG 60.055 52.174 0.00 0.00 0.00 4.96
2660 3389 3.835978 TCGTGACTGGGGTATATATTGGG 59.164 47.826 0.00 0.00 0.00 4.12
2661 3390 4.322499 GGTCGTGACTGGGGTATATATTGG 60.322 50.000 0.00 0.00 0.00 3.16
2662 3391 4.282449 TGGTCGTGACTGGGGTATATATTG 59.718 45.833 0.00 0.00 0.00 1.90
2663 3392 4.485875 TGGTCGTGACTGGGGTATATATT 58.514 43.478 0.00 0.00 0.00 1.28
2664 3393 4.122337 TGGTCGTGACTGGGGTATATAT 57.878 45.455 0.00 0.00 0.00 0.86
2665 3394 3.598693 TGGTCGTGACTGGGGTATATA 57.401 47.619 0.00 0.00 0.00 0.86
2666 3395 2.433239 GTTGGTCGTGACTGGGGTATAT 59.567 50.000 0.00 0.00 0.00 0.86
2667 3396 1.826720 GTTGGTCGTGACTGGGGTATA 59.173 52.381 0.00 0.00 0.00 1.47
2668 3397 0.611714 GTTGGTCGTGACTGGGGTAT 59.388 55.000 0.00 0.00 0.00 2.73
2669 3398 1.474332 GGTTGGTCGTGACTGGGGTA 61.474 60.000 0.00 0.00 0.00 3.69
2670 3399 2.814835 GGTTGGTCGTGACTGGGGT 61.815 63.158 0.00 0.00 0.00 4.95
2671 3400 2.032071 GGTTGGTCGTGACTGGGG 59.968 66.667 0.00 0.00 0.00 4.96
2672 3401 2.032071 GGGTTGGTCGTGACTGGG 59.968 66.667 0.00 0.00 0.00 4.45
2673 3402 0.955428 CATGGGTTGGTCGTGACTGG 60.955 60.000 0.00 0.00 0.00 4.00
2674 3403 0.955428 CCATGGGTTGGTCGTGACTG 60.955 60.000 2.85 0.00 40.99 3.51
2675 3404 1.374947 CCATGGGTTGGTCGTGACT 59.625 57.895 2.85 0.00 40.99 3.41
2676 3405 3.981308 CCATGGGTTGGTCGTGAC 58.019 61.111 2.85 0.00 40.99 3.67
2684 3413 1.958579 CTGTCATATGGCCATGGGTTG 59.041 52.381 29.04 18.66 0.00 3.77
2685 3414 1.570501 ACTGTCATATGGCCATGGGTT 59.429 47.619 29.04 4.46 0.00 4.11
2686 3415 1.133699 CACTGTCATATGGCCATGGGT 60.134 52.381 29.04 11.29 0.00 4.51
2687 3416 1.143481 TCACTGTCATATGGCCATGGG 59.857 52.381 29.04 19.20 0.00 4.00
2688 3417 2.158711 AGTCACTGTCATATGGCCATGG 60.159 50.000 29.04 19.56 0.00 3.66
2689 3418 3.204306 AGTCACTGTCATATGGCCATG 57.796 47.619 29.04 14.69 0.00 3.66
2690 3419 3.200605 TGAAGTCACTGTCATATGGCCAT 59.799 43.478 24.45 24.45 0.00 4.40
2691 3420 2.571202 TGAAGTCACTGTCATATGGCCA 59.429 45.455 8.56 8.56 0.00 5.36
2692 3421 2.939103 GTGAAGTCACTGTCATATGGCC 59.061 50.000 4.54 0.00 43.25 5.36
2702 3431 5.434583 TCGTGCTCGTAGTGAAGTCACTG 62.435 52.174 21.55 8.09 45.00 3.66
2703 3432 3.383968 TCGTGCTCGTAGTGAAGTCACT 61.384 50.000 17.57 17.57 46.05 3.41
2704 3433 1.069432 TCGTGCTCGTAGTGAAGTCAC 60.069 52.381 8.17 3.12 41.32 3.67
2705 3434 1.197036 CTCGTGCTCGTAGTGAAGTCA 59.803 52.381 8.17 0.00 38.33 3.41
2706 3435 1.884756 CTCGTGCTCGTAGTGAAGTC 58.115 55.000 8.17 0.00 38.33 3.01
2707 3436 0.109689 GCTCGTGCTCGTAGTGAAGT 60.110 55.000 8.17 0.00 38.33 3.01
2708 3437 2.643044 GCTCGTGCTCGTAGTGAAG 58.357 57.895 8.17 0.00 38.33 3.02
2709 3438 4.861883 GCTCGTGCTCGTAGTGAA 57.138 55.556 8.17 0.00 38.33 3.18
2722 3451 0.728129 TCTTTACACGCACGAGCTCG 60.728 55.000 33.45 33.45 46.33 5.03
2723 3452 0.985549 CTCTTTACACGCACGAGCTC 59.014 55.000 2.73 2.73 39.10 4.09
2724 3453 0.596577 TCTCTTTACACGCACGAGCT 59.403 50.000 2.73 0.00 39.10 4.09
2725 3454 1.321743 CATCTCTTTACACGCACGAGC 59.678 52.381 0.00 0.00 37.42 5.03
2726 3455 2.342651 CACATCTCTTTACACGCACGAG 59.657 50.000 0.00 0.00 0.00 4.18
2727 3456 2.030628 TCACATCTCTTTACACGCACGA 60.031 45.455 0.00 0.00 0.00 4.35
2728 3457 2.324860 TCACATCTCTTTACACGCACG 58.675 47.619 0.00 0.00 0.00 5.34
2729 3458 4.725556 TTTCACATCTCTTTACACGCAC 57.274 40.909 0.00 0.00 0.00 5.34
2730 3459 4.154015 CCATTTCACATCTCTTTACACGCA 59.846 41.667 0.00 0.00 0.00 5.24
2731 3460 4.437390 CCCATTTCACATCTCTTTACACGC 60.437 45.833 0.00 0.00 0.00 5.34
2732 3461 4.437390 GCCCATTTCACATCTCTTTACACG 60.437 45.833 0.00 0.00 0.00 4.49
2733 3462 4.458989 TGCCCATTTCACATCTCTTTACAC 59.541 41.667 0.00 0.00 0.00 2.90
2734 3463 4.458989 GTGCCCATTTCACATCTCTTTACA 59.541 41.667 0.00 0.00 34.73 2.41
2735 3464 4.142381 GGTGCCCATTTCACATCTCTTTAC 60.142 45.833 0.00 0.00 36.22 2.01
2736 3465 4.016444 GGTGCCCATTTCACATCTCTTTA 58.984 43.478 0.00 0.00 36.22 1.85
2737 3466 2.827921 GGTGCCCATTTCACATCTCTTT 59.172 45.455 0.00 0.00 36.22 2.52
2738 3467 2.225091 TGGTGCCCATTTCACATCTCTT 60.225 45.455 0.00 0.00 36.22 2.85
2739 3468 1.355381 TGGTGCCCATTTCACATCTCT 59.645 47.619 0.00 0.00 36.22 3.10
2740 3469 1.838112 TGGTGCCCATTTCACATCTC 58.162 50.000 0.00 0.00 36.22 2.75
2741 3470 2.307496 TTGGTGCCCATTTCACATCT 57.693 45.000 0.00 0.00 36.22 2.90
2742 3471 2.562298 TCTTTGGTGCCCATTTCACATC 59.438 45.455 0.00 0.00 36.22 3.06
2743 3472 2.564062 CTCTTTGGTGCCCATTTCACAT 59.436 45.455 0.00 0.00 36.22 3.21
2744 3473 1.962807 CTCTTTGGTGCCCATTTCACA 59.037 47.619 0.00 0.00 36.22 3.58
2745 3474 1.963515 ACTCTTTGGTGCCCATTTCAC 59.036 47.619 0.00 0.00 31.53 3.18
2746 3475 2.380064 ACTCTTTGGTGCCCATTTCA 57.620 45.000 0.00 0.00 31.53 2.69
2747 3476 2.161609 CGTACTCTTTGGTGCCCATTTC 59.838 50.000 0.00 0.00 31.53 2.17
2748 3477 2.159382 CGTACTCTTTGGTGCCCATTT 58.841 47.619 0.00 0.00 31.53 2.32
2749 3478 1.821216 CGTACTCTTTGGTGCCCATT 58.179 50.000 0.00 0.00 31.53 3.16
2750 3479 0.676782 GCGTACTCTTTGGTGCCCAT 60.677 55.000 0.00 0.00 31.53 4.00
2751 3480 1.302192 GCGTACTCTTTGGTGCCCA 60.302 57.895 0.00 0.00 0.00 5.36
2752 3481 1.003718 AGCGTACTCTTTGGTGCCC 60.004 57.895 0.00 0.00 0.00 5.36
2753 3482 0.320421 TCAGCGTACTCTTTGGTGCC 60.320 55.000 0.00 0.00 0.00 5.01
2754 3483 1.461127 CTTCAGCGTACTCTTTGGTGC 59.539 52.381 0.00 0.00 0.00 5.01
2755 3484 2.755650 ACTTCAGCGTACTCTTTGGTG 58.244 47.619 0.00 0.00 0.00 4.17
2756 3485 3.614390 GCTACTTCAGCGTACTCTTTGGT 60.614 47.826 0.00 0.00 41.37 3.67
2757 3486 2.924290 GCTACTTCAGCGTACTCTTTGG 59.076 50.000 0.00 0.00 41.37 3.28
2769 3498 2.440539 ACACTCCGTTGCTACTTCAG 57.559 50.000 0.00 0.00 0.00 3.02
2770 3499 2.351060 CGTACACTCCGTTGCTACTTCA 60.351 50.000 0.00 0.00 0.00 3.02
2771 3500 2.248487 CGTACACTCCGTTGCTACTTC 58.752 52.381 0.00 0.00 0.00 3.01
2772 3501 1.610522 ACGTACACTCCGTTGCTACTT 59.389 47.619 0.00 0.00 34.28 2.24
2773 3502 1.068748 CACGTACACTCCGTTGCTACT 60.069 52.381 0.00 0.00 36.17 2.57
2774 3503 1.334054 CACGTACACTCCGTTGCTAC 58.666 55.000 0.00 0.00 36.17 3.58
2775 3504 0.387622 GCACGTACACTCCGTTGCTA 60.388 55.000 0.00 0.00 36.17 3.49
2776 3505 1.663702 GCACGTACACTCCGTTGCT 60.664 57.895 0.00 0.00 36.17 3.91
2777 3506 2.851104 GCACGTACACTCCGTTGC 59.149 61.111 0.00 0.00 36.17 4.17
2778 3507 2.995450 GCGCACGTACACTCCGTTG 61.995 63.158 0.30 0.00 36.17 4.10
2779 3508 2.732094 GCGCACGTACACTCCGTT 60.732 61.111 0.30 0.00 36.17 4.44
2781 3510 4.746951 TCGCGCACGTACACTCCG 62.747 66.667 8.75 0.00 41.18 4.63
2782 3511 2.594119 ATCTCGCGCACGTACACTCC 62.594 60.000 8.75 0.00 41.18 3.85
2783 3512 1.194896 GATCTCGCGCACGTACACTC 61.195 60.000 8.75 0.00 41.18 3.51
2784 3513 1.226323 GATCTCGCGCACGTACACT 60.226 57.895 8.75 0.00 41.18 3.55
2785 3514 2.556677 CGATCTCGCGCACGTACAC 61.557 63.158 8.75 0.00 41.18 2.90
2786 3515 2.277057 CGATCTCGCGCACGTACA 60.277 61.111 8.75 0.00 41.18 2.90
2787 3516 2.022346 TCGATCTCGCGCACGTAC 59.978 61.111 8.75 0.00 41.18 3.67
2788 3517 2.022346 GTCGATCTCGCGCACGTA 59.978 61.111 8.75 0.00 41.18 3.57
2789 3518 3.604494 TTGTCGATCTCGCGCACGT 62.604 57.895 8.75 0.00 41.18 4.49
2790 3519 2.874315 TTGTCGATCTCGCGCACG 60.874 61.111 8.75 4.40 39.60 5.34
2791 3520 2.689766 GTTGTCGATCTCGCGCAC 59.310 61.111 8.75 0.00 39.60 5.34
2792 3521 2.874315 CGTTGTCGATCTCGCGCA 60.874 61.111 8.75 0.00 39.71 6.09
2793 3522 2.576053 TCGTTGTCGATCTCGCGC 60.576 61.111 0.00 0.00 41.35 6.86
2801 3530 3.028019 GTGCGCTGTCGTTGTCGA 61.028 61.111 9.73 0.00 44.12 4.20
2802 3531 4.394941 CGTGCGCTGTCGTTGTCG 62.395 66.667 9.73 0.00 38.14 4.35
2803 3532 4.702826 GCGTGCGCTGTCGTTGTC 62.703 66.667 9.73 0.00 38.26 3.18
2811 3540 4.873129 AGATACCGGCGTGCGCTG 62.873 66.667 17.41 17.41 46.37 5.18
2812 3541 4.143333 AAGATACCGGCGTGCGCT 62.143 61.111 16.21 0.00 41.60 5.92
2813 3542 3.627218 GAAGATACCGGCGTGCGC 61.627 66.667 6.01 8.17 41.06 6.09
2814 3543 1.944676 GAGAAGATACCGGCGTGCG 60.945 63.158 6.01 0.00 0.00 5.34
2815 3544 1.944676 CGAGAAGATACCGGCGTGC 60.945 63.158 6.01 0.00 0.00 5.34
2816 3545 1.299165 CCGAGAAGATACCGGCGTG 60.299 63.158 6.01 0.00 36.62 5.34
2817 3546 1.318158 AACCGAGAAGATACCGGCGT 61.318 55.000 6.01 0.00 46.54 5.68
2818 3547 0.179119 AAACCGAGAAGATACCGGCG 60.179 55.000 0.00 0.00 46.54 6.46
2819 3548 1.287425 CAAACCGAGAAGATACCGGC 58.713 55.000 0.00 0.00 46.54 6.13
2821 3550 2.671396 CCAACAAACCGAGAAGATACCG 59.329 50.000 0.00 0.00 0.00 4.02
2822 3551 3.007635 CCCAACAAACCGAGAAGATACC 58.992 50.000 0.00 0.00 0.00 2.73
2823 3552 3.007635 CCCCAACAAACCGAGAAGATAC 58.992 50.000 0.00 0.00 0.00 2.24
2824 3553 2.907696 TCCCCAACAAACCGAGAAGATA 59.092 45.455 0.00 0.00 0.00 1.98
2825 3554 1.702957 TCCCCAACAAACCGAGAAGAT 59.297 47.619 0.00 0.00 0.00 2.40
2826 3555 1.133363 TCCCCAACAAACCGAGAAGA 58.867 50.000 0.00 0.00 0.00 2.87
2827 3556 1.975660 TTCCCCAACAAACCGAGAAG 58.024 50.000 0.00 0.00 0.00 2.85
2828 3557 2.438800 TTTCCCCAACAAACCGAGAA 57.561 45.000 0.00 0.00 0.00 2.87
2829 3558 2.438800 TTTTCCCCAACAAACCGAGA 57.561 45.000 0.00 0.00 0.00 4.04
2830 3559 2.801699 GCTTTTTCCCCAACAAACCGAG 60.802 50.000 0.00 0.00 0.00 4.63
2831 3560 1.137282 GCTTTTTCCCCAACAAACCGA 59.863 47.619 0.00 0.00 0.00 4.69
2832 3561 1.577468 GCTTTTTCCCCAACAAACCG 58.423 50.000 0.00 0.00 0.00 4.44
2833 3562 1.476110 GGGCTTTTTCCCCAACAAACC 60.476 52.381 0.00 0.00 42.36 3.27
2834 3563 1.961793 GGGCTTTTTCCCCAACAAAC 58.038 50.000 0.00 0.00 42.36 2.93
2841 3570 4.076394 GGTTTAAAATGGGCTTTTTCCCC 58.924 43.478 0.00 0.00 45.97 4.81
2842 3571 4.980573 AGGTTTAAAATGGGCTTTTTCCC 58.019 39.130 0.00 0.00 46.73 3.97
2851 3580 7.947282 TCTACAAGTTCAAGGTTTAAAATGGG 58.053 34.615 0.00 0.00 0.00 4.00
2900 3629 3.057596 GTGCAATCGACCAGGATTTTGAA 60.058 43.478 0.00 0.00 34.50 2.69
2910 3639 0.396435 AGTTCAGGTGCAATCGACCA 59.604 50.000 0.00 0.00 35.76 4.02
2946 3676 1.046472 AACGATGCCAGGGTCCGATA 61.046 55.000 0.00 0.00 0.00 2.92
2951 3681 0.521735 GTTCAAACGATGCCAGGGTC 59.478 55.000 0.00 0.00 0.00 4.46
3015 3745 7.093354 GCCCTTTGGAATTTTTGTTTTTGAAA 58.907 30.769 0.00 0.00 0.00 2.69
3077 3815 3.004524 ACCACCGCACGCTAATTTTAAAA 59.995 39.130 2.51 2.51 0.00 1.52
3080 3818 1.810959 ACCACCGCACGCTAATTTTA 58.189 45.000 0.00 0.00 0.00 1.52
3090 3831 2.092882 GTTCGAGCTACCACCGCAC 61.093 63.158 0.00 0.00 0.00 5.34
3146 3887 6.041296 TCGTAGATTTTAGATAAGGTGTCCCC 59.959 42.308 0.00 0.00 0.00 4.81
3331 4074 7.269316 CAAATGGGCCGGTTTTTATATACTTT 58.731 34.615 1.90 0.00 0.00 2.66
3344 4087 1.645402 ATAGCTCCAAATGGGCCGGT 61.645 55.000 1.90 0.00 36.21 5.28
3376 4119 6.866248 GGACTTTTCCAGATTTATTTTTGCGA 59.134 34.615 0.00 0.00 42.30 5.10
3381 4124 7.544804 AGCAGGACTTTTCCAGATTTATTTT 57.455 32.000 0.00 0.00 45.72 1.82
3399 4142 2.488545 GAGTTCGAGTCACTAAGCAGGA 59.511 50.000 0.00 0.00 0.00 3.86
3406 4150 0.441533 GTCGCGAGTTCGAGTCACTA 59.558 55.000 10.24 0.00 43.02 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.