Multiple sequence alignment - TraesCS7B01G396900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G396900 chr7B 100.000 2660 0 0 1 2660 663453790 663451131 0.000000e+00 4913.0
1 TraesCS7B01G396900 chr7B 97.143 70 2 0 1 70 649365222 649365291 4.650000e-23 119.0
2 TraesCS7B01G396900 chr7B 79.310 145 20 8 733 872 695366557 695366696 2.820000e-15 93.5
3 TraesCS7B01G396900 chr7B 79.845 129 12 11 425 550 697545301 697545418 6.100000e-12 82.4
4 TraesCS7B01G396900 chr7B 75.316 158 35 4 717 872 697545558 697545713 3.670000e-09 73.1
5 TraesCS7B01G396900 chr7B 97.561 41 1 0 1 41 642739849 642739809 1.320000e-08 71.3
6 TraesCS7B01G396900 chr7B 89.091 55 5 1 426 479 92959531 92959585 1.710000e-07 67.6
7 TraesCS7B01G396900 chr7B 84.848 66 5 4 426 488 698234568 698234505 7.950000e-06 62.1
8 TraesCS7B01G396900 chr7B 86.538 52 6 1 426 476 695286067 695286118 3.700000e-04 56.5
9 TraesCS7B01G396900 chr7D 91.703 1627 108 14 375 1979 589278693 589280314 0.000000e+00 2231.0
10 TraesCS7B01G396900 chr7D 86.879 1791 178 27 344 2104 589195216 589196979 0.000000e+00 1953.0
11 TraesCS7B01G396900 chr7D 91.901 284 21 2 2122 2405 589280359 589280640 1.920000e-106 396.0
12 TraesCS7B01G396900 chr7D 92.607 257 12 3 2407 2660 589280683 589280935 1.950000e-96 363.0
13 TraesCS7B01G396900 chr7D 77.273 154 28 5 722 870 608513685 608513534 1.700000e-12 84.2
14 TraesCS7B01G396900 chr7D 77.483 151 23 7 729 869 514758399 514758250 2.190000e-11 80.5
15 TraesCS7B01G396900 chr7A 91.195 1556 101 10 574 2104 680566815 680568359 0.000000e+00 2082.0
16 TraesCS7B01G396900 chr7A 92.254 284 22 0 2122 2405 680568649 680568932 1.150000e-108 403.0
17 TraesCS7B01G396900 chr7A 90.957 188 10 5 2479 2660 680569577 680569763 2.050000e-61 246.0
18 TraesCS7B01G396900 chr7A 94.937 79 4 0 2407 2485 680568975 680569053 1.000000e-24 124.0
19 TraesCS7B01G396900 chr7A 82.171 129 9 11 425 550 700045687 700045804 6.060000e-17 99.0
20 TraesCS7B01G396900 chr7A 85.915 71 8 2 426 495 130383487 130383556 1.020000e-09 75.0
21 TraesCS7B01G396900 chr7A 88.636 44 4 1 713 756 700045932 700045974 5.000000e-03 52.8
22 TraesCS7B01G396900 chr2B 98.551 69 0 1 1 68 16793356 16793288 1.290000e-23 121.0
23 TraesCS7B01G396900 chr2B 98.462 65 1 0 1 65 184787166 184787230 6.020000e-22 115.0
24 TraesCS7B01G396900 chr2B 94.366 71 3 1 1 70 465651859 465651929 1.010000e-19 108.0
25 TraesCS7B01G396900 chr2B 92.453 53 2 2 25 75 121174863 121174915 1.020000e-09 75.0
26 TraesCS7B01G396900 chr5B 94.203 69 4 0 1 69 622501297 622501365 3.620000e-19 106.0
27 TraesCS7B01G396900 chr3B 95.385 65 3 0 1 65 71435664 71435728 1.300000e-18 104.0
28 TraesCS7B01G396900 chr4A 92.958 71 4 1 1 71 687286114 687286183 4.680000e-18 102.0
29 TraesCS7B01G396900 chr5A 92.424 66 5 0 1 66 43251267 43251332 7.840000e-16 95.3
30 TraesCS7B01G396900 chr1A 93.182 44 3 0 718 761 557138993 557139036 6.150000e-07 65.8
31 TraesCS7B01G396900 chrUn 86.538 52 6 1 426 476 77779903 77779954 3.700000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G396900 chr7B 663451131 663453790 2659 True 4913.000000 4913 100.000000 1 2660 1 chr7B.!!$R2 2659
1 TraesCS7B01G396900 chr7D 589195216 589196979 1763 False 1953.000000 1953 86.879000 344 2104 1 chr7D.!!$F1 1760
2 TraesCS7B01G396900 chr7D 589278693 589280935 2242 False 996.666667 2231 92.070333 375 2660 3 chr7D.!!$F2 2285
3 TraesCS7B01G396900 chr7A 680566815 680569763 2948 False 713.750000 2082 92.335750 574 2660 4 chr7A.!!$F2 2086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.027979 CAACATATCCGCCGCTTGTG 59.972 55.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 2078 0.035725 CACAGGCTCAAGGATGCTGA 60.036 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.121380 AGCATCCAATGATTGTAAGGACT 57.879 39.130 4.27 0.00 0.00 3.85
24 25 5.513233 AGCATCCAATGATTGTAAGGACTT 58.487 37.500 4.27 0.00 0.00 3.01
25 26 5.954150 AGCATCCAATGATTGTAAGGACTTT 59.046 36.000 4.27 0.00 0.00 2.66
26 27 6.038356 GCATCCAATGATTGTAAGGACTTTG 58.962 40.000 4.27 0.00 0.00 2.77
27 28 6.350445 GCATCCAATGATTGTAAGGACTTTGT 60.350 38.462 4.27 0.00 0.00 2.83
28 29 6.573664 TCCAATGATTGTAAGGACTTTGTG 57.426 37.500 4.27 0.00 0.00 3.33
29 30 6.303054 TCCAATGATTGTAAGGACTTTGTGA 58.697 36.000 4.27 0.00 0.00 3.58
30 31 6.947733 TCCAATGATTGTAAGGACTTTGTGAT 59.052 34.615 4.27 0.00 0.00 3.06
31 32 7.451255 TCCAATGATTGTAAGGACTTTGTGATT 59.549 33.333 4.27 0.00 0.00 2.57
32 33 7.543172 CCAATGATTGTAAGGACTTTGTGATTG 59.457 37.037 4.27 0.00 0.00 2.67
33 34 8.298854 CAATGATTGTAAGGACTTTGTGATTGA 58.701 33.333 0.00 0.00 0.00 2.57
34 35 8.585471 ATGATTGTAAGGACTTTGTGATTGAT 57.415 30.769 0.00 0.00 0.00 2.57
35 36 8.408043 TGATTGTAAGGACTTTGTGATTGATT 57.592 30.769 0.00 0.00 0.00 2.57
36 37 9.513906 TGATTGTAAGGACTTTGTGATTGATTA 57.486 29.630 0.00 0.00 0.00 1.75
45 46 9.023967 GGACTTTGTGATTGATTAATACATTGC 57.976 33.333 0.00 0.00 0.00 3.56
46 47 9.793252 GACTTTGTGATTGATTAATACATTGCT 57.207 29.630 0.00 0.00 0.00 3.91
56 57 7.870826 TGATTAATACATTGCTATTTCACCCG 58.129 34.615 0.00 0.00 0.00 5.28
57 58 7.717436 TGATTAATACATTGCTATTTCACCCGA 59.283 33.333 0.00 0.00 0.00 5.14
58 59 7.867305 TTAATACATTGCTATTTCACCCGAA 57.133 32.000 0.00 0.00 0.00 4.30
59 60 6.767524 AATACATTGCTATTTCACCCGAAA 57.232 33.333 0.00 0.00 44.99 3.46
60 61 6.767524 ATACATTGCTATTTCACCCGAAAA 57.232 33.333 0.00 0.00 44.12 2.29
61 62 5.461032 ACATTGCTATTTCACCCGAAAAA 57.539 34.783 0.00 0.00 44.12 1.94
85 86 5.462530 AAAAAGTGGTACCCATGTAAAGC 57.537 39.130 10.07 0.00 35.28 3.51
86 87 2.396590 AGTGGTACCCATGTAAAGCG 57.603 50.000 10.07 0.00 35.28 4.68
87 88 1.065709 AGTGGTACCCATGTAAAGCGG 60.066 52.381 10.07 0.00 35.28 5.52
88 89 0.393267 TGGTACCCATGTAAAGCGGC 60.393 55.000 10.07 0.00 0.00 6.53
89 90 1.099295 GGTACCCATGTAAAGCGGCC 61.099 60.000 0.00 0.00 0.00 6.13
90 91 0.393267 GTACCCATGTAAAGCGGCCA 60.393 55.000 2.24 0.00 0.00 5.36
91 92 0.548989 TACCCATGTAAAGCGGCCAT 59.451 50.000 2.24 0.00 0.00 4.40
92 93 1.037030 ACCCATGTAAAGCGGCCATG 61.037 55.000 2.24 9.20 36.56 3.66
93 94 0.751277 CCCATGTAAAGCGGCCATGA 60.751 55.000 15.56 0.00 38.56 3.07
94 95 1.321474 CCATGTAAAGCGGCCATGAT 58.679 50.000 15.56 0.00 38.56 2.45
95 96 1.682854 CCATGTAAAGCGGCCATGATT 59.317 47.619 15.56 0.00 38.56 2.57
96 97 2.884012 CCATGTAAAGCGGCCATGATTA 59.116 45.455 15.56 0.00 38.56 1.75
97 98 3.058016 CCATGTAAAGCGGCCATGATTAG 60.058 47.826 15.56 0.00 38.56 1.73
98 99 3.275617 TGTAAAGCGGCCATGATTAGT 57.724 42.857 2.24 0.00 0.00 2.24
99 100 3.202906 TGTAAAGCGGCCATGATTAGTC 58.797 45.455 2.24 0.00 0.00 2.59
100 101 2.717639 AAAGCGGCCATGATTAGTCT 57.282 45.000 2.24 0.00 0.00 3.24
101 102 2.246719 AAGCGGCCATGATTAGTCTC 57.753 50.000 2.24 0.00 0.00 3.36
102 103 0.394565 AGCGGCCATGATTAGTCTCC 59.605 55.000 2.24 0.00 0.00 3.71
103 104 0.394565 GCGGCCATGATTAGTCTCCT 59.605 55.000 2.24 0.00 0.00 3.69
104 105 1.606737 GCGGCCATGATTAGTCTCCTC 60.607 57.143 2.24 0.00 0.00 3.71
105 106 1.336332 CGGCCATGATTAGTCTCCTCG 60.336 57.143 2.24 0.00 0.00 4.63
106 107 1.689273 GGCCATGATTAGTCTCCTCGT 59.311 52.381 0.00 0.00 0.00 4.18
107 108 2.546795 GGCCATGATTAGTCTCCTCGTG 60.547 54.545 0.00 0.00 0.00 4.35
108 109 2.546795 GCCATGATTAGTCTCCTCGTGG 60.547 54.545 14.48 14.48 45.11 4.94
109 110 2.695666 CCATGATTAGTCTCCTCGTGGT 59.304 50.000 2.99 0.00 39.96 4.16
110 111 3.491619 CCATGATTAGTCTCCTCGTGGTG 60.492 52.174 2.99 0.95 39.96 4.17
111 112 2.100197 TGATTAGTCTCCTCGTGGTGG 58.900 52.381 2.99 0.00 34.23 4.61
112 113 1.409427 GATTAGTCTCCTCGTGGTGGG 59.591 57.143 2.99 0.00 34.23 4.61
113 114 0.406750 TTAGTCTCCTCGTGGTGGGA 59.593 55.000 2.99 0.00 34.23 4.37
114 115 0.406750 TAGTCTCCTCGTGGTGGGAA 59.593 55.000 2.99 0.00 34.23 3.97
115 116 0.900647 AGTCTCCTCGTGGTGGGAAG 60.901 60.000 2.99 0.00 34.23 3.46
116 117 0.898789 GTCTCCTCGTGGTGGGAAGA 60.899 60.000 2.99 0.00 34.23 2.87
117 118 0.612174 TCTCCTCGTGGTGGGAAGAG 60.612 60.000 2.99 0.00 34.23 2.85
118 119 2.982130 CCTCGTGGTGGGAAGAGG 59.018 66.667 0.00 0.00 43.43 3.69
119 120 4.113617 CTCGTGGTGGGAAGAGGA 57.886 61.111 0.00 0.00 0.00 3.71
120 121 1.893786 CTCGTGGTGGGAAGAGGAG 59.106 63.158 0.00 0.00 0.00 3.69
121 122 0.612174 CTCGTGGTGGGAAGAGGAGA 60.612 60.000 0.00 0.00 0.00 3.71
122 123 0.178944 TCGTGGTGGGAAGAGGAGAA 60.179 55.000 0.00 0.00 0.00 2.87
123 124 0.247736 CGTGGTGGGAAGAGGAGAAG 59.752 60.000 0.00 0.00 0.00 2.85
124 125 0.615850 GTGGTGGGAAGAGGAGAAGG 59.384 60.000 0.00 0.00 0.00 3.46
125 126 1.201429 TGGTGGGAAGAGGAGAAGGC 61.201 60.000 0.00 0.00 0.00 4.35
126 127 0.912006 GGTGGGAAGAGGAGAAGGCT 60.912 60.000 0.00 0.00 0.00 4.58
127 128 1.622725 GGTGGGAAGAGGAGAAGGCTA 60.623 57.143 0.00 0.00 0.00 3.93
128 129 1.760029 GTGGGAAGAGGAGAAGGCTAG 59.240 57.143 0.00 0.00 0.00 3.42
129 130 0.756294 GGGAAGAGGAGAAGGCTAGC 59.244 60.000 6.04 6.04 0.00 3.42
130 131 1.691163 GGGAAGAGGAGAAGGCTAGCT 60.691 57.143 15.72 0.00 0.00 3.32
131 132 2.425102 GGGAAGAGGAGAAGGCTAGCTA 60.425 54.545 15.72 0.00 0.00 3.32
132 133 2.890945 GGAAGAGGAGAAGGCTAGCTAG 59.109 54.545 16.84 16.84 0.00 3.42
133 134 2.675658 AGAGGAGAAGGCTAGCTAGG 57.324 55.000 22.10 4.48 0.00 3.02
134 135 1.146982 AGAGGAGAAGGCTAGCTAGGG 59.853 57.143 22.10 0.00 0.00 3.53
135 136 0.471022 AGGAGAAGGCTAGCTAGGGC 60.471 60.000 22.10 14.39 39.06 5.19
136 137 1.663173 GAGAAGGCTAGCTAGGGCG 59.337 63.158 22.10 0.00 44.37 6.13
137 138 1.811645 GAGAAGGCTAGCTAGGGCGG 61.812 65.000 22.10 0.00 44.37 6.13
138 139 3.523087 GAAGGCTAGCTAGGGCGGC 62.523 68.421 22.10 9.39 44.37 6.53
139 140 4.548513 AGGCTAGCTAGGGCGGCT 62.549 66.667 22.10 11.59 44.37 5.52
140 141 4.306967 GGCTAGCTAGGGCGGCTG 62.307 72.222 22.10 0.56 44.37 4.85
141 142 4.978863 GCTAGCTAGGGCGGCTGC 62.979 72.222 22.10 9.72 44.37 5.25
142 143 3.540751 CTAGCTAGGGCGGCTGCA 61.541 66.667 21.31 0.00 45.35 4.41
143 144 2.844362 TAGCTAGGGCGGCTGCAT 60.844 61.111 21.31 9.93 45.35 3.96
144 145 3.169155 TAGCTAGGGCGGCTGCATG 62.169 63.158 21.31 6.88 45.35 4.06
146 147 4.559063 CTAGGGCGGCTGCATGCT 62.559 66.667 21.31 0.00 45.35 3.79
147 148 3.160748 TAGGGCGGCTGCATGCTA 61.161 61.111 21.31 4.40 45.35 3.49
148 149 3.169155 TAGGGCGGCTGCATGCTAG 62.169 63.158 21.31 15.13 45.35 3.42
149 150 4.864334 GGGCGGCTGCATGCTAGT 62.864 66.667 21.31 0.00 45.35 2.57
150 151 3.580193 GGCGGCTGCATGCTAGTG 61.580 66.667 21.31 11.84 45.35 2.74
151 152 2.512286 GCGGCTGCATGCTAGTGA 60.512 61.111 20.33 0.00 42.15 3.41
152 153 2.532256 GCGGCTGCATGCTAGTGAG 61.532 63.158 20.33 8.49 42.15 3.51
153 154 1.142531 CGGCTGCATGCTAGTGAGA 59.857 57.895 20.33 0.00 42.39 3.27
154 155 0.460811 CGGCTGCATGCTAGTGAGAA 60.461 55.000 20.33 0.00 42.39 2.87
155 156 1.297664 GGCTGCATGCTAGTGAGAAG 58.702 55.000 20.33 6.13 42.39 2.85
156 157 1.297664 GCTGCATGCTAGTGAGAAGG 58.702 55.000 20.33 0.00 38.95 3.46
157 158 1.134580 GCTGCATGCTAGTGAGAAGGA 60.135 52.381 20.33 0.00 38.95 3.36
158 159 2.679059 GCTGCATGCTAGTGAGAAGGAA 60.679 50.000 20.33 0.00 38.95 3.36
159 160 3.196463 CTGCATGCTAGTGAGAAGGAAG 58.804 50.000 20.33 0.00 0.00 3.46
160 161 2.093288 TGCATGCTAGTGAGAAGGAAGG 60.093 50.000 20.33 0.00 0.00 3.46
161 162 2.559440 CATGCTAGTGAGAAGGAAGGC 58.441 52.381 0.00 0.00 0.00 4.35
162 163 0.532573 TGCTAGTGAGAAGGAAGGCG 59.467 55.000 0.00 0.00 0.00 5.52
163 164 0.818296 GCTAGTGAGAAGGAAGGCGA 59.182 55.000 0.00 0.00 0.00 5.54
164 165 1.202359 GCTAGTGAGAAGGAAGGCGAG 60.202 57.143 0.00 0.00 0.00 5.03
165 166 2.370349 CTAGTGAGAAGGAAGGCGAGA 58.630 52.381 0.00 0.00 0.00 4.04
166 167 1.181786 AGTGAGAAGGAAGGCGAGAG 58.818 55.000 0.00 0.00 0.00 3.20
167 168 0.174617 GTGAGAAGGAAGGCGAGAGG 59.825 60.000 0.00 0.00 0.00 3.69
168 169 0.251832 TGAGAAGGAAGGCGAGAGGT 60.252 55.000 0.00 0.00 0.00 3.85
169 170 0.899019 GAGAAGGAAGGCGAGAGGTT 59.101 55.000 0.00 0.00 0.00 3.50
170 171 0.899019 AGAAGGAAGGCGAGAGGTTC 59.101 55.000 0.00 0.00 0.00 3.62
178 179 4.194720 CGAGAGGTTCGGCGGAGG 62.195 72.222 7.21 0.00 45.54 4.30
196 197 3.943034 CCCGCGCGTTTGTGTTGA 61.943 61.111 29.95 0.00 0.00 3.18
197 198 2.023461 CCGCGCGTTTGTGTTGAA 59.977 55.556 29.95 0.00 0.00 2.69
198 199 2.003443 CCGCGCGTTTGTGTTGAAG 61.003 57.895 29.95 4.27 0.00 3.02
199 200 1.297304 CGCGCGTTTGTGTTGAAGT 60.297 52.632 24.19 0.00 0.00 3.01
200 201 1.253044 CGCGCGTTTGTGTTGAAGTC 61.253 55.000 24.19 0.00 0.00 3.01
201 202 0.247894 GCGCGTTTGTGTTGAAGTCA 60.248 50.000 8.43 0.00 0.00 3.41
202 203 1.730176 CGCGTTTGTGTTGAAGTCAG 58.270 50.000 0.00 0.00 0.00 3.51
203 204 1.466855 GCGTTTGTGTTGAAGTCAGC 58.533 50.000 0.00 0.00 0.00 4.26
204 205 1.730176 CGTTTGTGTTGAAGTCAGCG 58.270 50.000 0.00 0.00 0.00 5.18
205 206 1.062002 CGTTTGTGTTGAAGTCAGCGT 59.938 47.619 0.00 0.00 0.00 5.07
206 207 2.440501 GTTTGTGTTGAAGTCAGCGTG 58.559 47.619 0.00 0.00 0.00 5.34
207 208 0.376852 TTGTGTTGAAGTCAGCGTGC 59.623 50.000 0.00 0.00 0.00 5.34
208 209 0.461870 TGTGTTGAAGTCAGCGTGCT 60.462 50.000 0.00 0.00 0.00 4.40
209 210 0.041839 GTGTTGAAGTCAGCGTGCTG 60.042 55.000 15.59 15.59 44.86 4.41
217 218 3.430779 TCAGCGTGCTGATTCTGAG 57.569 52.632 19.99 0.00 46.80 3.35
218 219 0.605083 TCAGCGTGCTGATTCTGAGT 59.395 50.000 19.99 0.00 46.80 3.41
219 220 1.001293 TCAGCGTGCTGATTCTGAGTT 59.999 47.619 19.99 0.00 46.80 3.01
220 221 1.128136 CAGCGTGCTGATTCTGAGTTG 59.872 52.381 16.69 0.00 46.30 3.16
221 222 0.179205 GCGTGCTGATTCTGAGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
222 223 0.094216 CGTGCTGATTCTGAGTTGCG 59.906 55.000 0.00 0.00 0.00 4.85
223 224 1.151668 GTGCTGATTCTGAGTTGCGT 58.848 50.000 0.00 0.00 0.00 5.24
224 225 1.532868 GTGCTGATTCTGAGTTGCGTT 59.467 47.619 0.00 0.00 0.00 4.84
225 226 1.800586 TGCTGATTCTGAGTTGCGTTC 59.199 47.619 0.00 0.00 0.00 3.95
226 227 1.800586 GCTGATTCTGAGTTGCGTTCA 59.199 47.619 0.00 0.00 0.00 3.18
227 228 2.412065 GCTGATTCTGAGTTGCGTTCAC 60.412 50.000 0.00 0.00 0.00 3.18
228 229 2.802247 CTGATTCTGAGTTGCGTTCACA 59.198 45.455 0.00 0.00 0.00 3.58
229 230 2.543848 TGATTCTGAGTTGCGTTCACAC 59.456 45.455 0.00 0.00 0.00 3.82
230 231 1.295792 TTCTGAGTTGCGTTCACACC 58.704 50.000 0.00 0.00 0.00 4.16
231 232 0.464036 TCTGAGTTGCGTTCACACCT 59.536 50.000 0.00 0.00 0.00 4.00
232 233 0.861837 CTGAGTTGCGTTCACACCTC 59.138 55.000 0.00 0.00 0.00 3.85
233 234 0.874175 TGAGTTGCGTTCACACCTCG 60.874 55.000 0.00 0.00 0.00 4.63
234 235 0.596600 GAGTTGCGTTCACACCTCGA 60.597 55.000 0.00 0.00 0.00 4.04
235 236 0.033504 AGTTGCGTTCACACCTCGAT 59.966 50.000 0.00 0.00 0.00 3.59
236 237 0.163788 GTTGCGTTCACACCTCGATG 59.836 55.000 0.00 0.00 0.00 3.84
237 238 1.565156 TTGCGTTCACACCTCGATGC 61.565 55.000 0.00 0.00 0.00 3.91
238 239 2.027073 GCGTTCACACCTCGATGCA 61.027 57.895 0.00 0.00 0.00 3.96
239 240 1.565156 GCGTTCACACCTCGATGCAA 61.565 55.000 0.00 0.00 0.00 4.08
240 241 0.163788 CGTTCACACCTCGATGCAAC 59.836 55.000 0.00 0.00 0.00 4.17
241 242 0.517316 GTTCACACCTCGATGCAACC 59.483 55.000 0.00 0.00 0.00 3.77
242 243 0.396435 TTCACACCTCGATGCAACCT 59.604 50.000 0.00 0.00 0.00 3.50
243 244 0.396435 TCACACCTCGATGCAACCTT 59.604 50.000 0.00 0.00 0.00 3.50
244 245 1.202758 TCACACCTCGATGCAACCTTT 60.203 47.619 0.00 0.00 0.00 3.11
245 246 1.069022 CACACCTCGATGCAACCTTTG 60.069 52.381 0.00 0.00 0.00 2.77
246 247 0.523072 CACCTCGATGCAACCTTTGG 59.477 55.000 0.00 0.00 0.00 3.28
247 248 1.244019 ACCTCGATGCAACCTTTGGC 61.244 55.000 0.00 0.00 0.00 4.52
248 249 1.243342 CCTCGATGCAACCTTTGGCA 61.243 55.000 0.00 0.00 45.23 4.92
254 255 2.529780 TGCAACCTTTGGCATTTCTG 57.470 45.000 0.00 0.00 34.58 3.02
255 256 1.761784 TGCAACCTTTGGCATTTCTGT 59.238 42.857 0.00 0.00 34.58 3.41
256 257 2.224018 TGCAACCTTTGGCATTTCTGTC 60.224 45.455 0.00 0.00 34.58 3.51
257 258 2.036346 GCAACCTTTGGCATTTCTGTCT 59.964 45.455 0.00 0.00 0.00 3.41
258 259 3.858503 GCAACCTTTGGCATTTCTGTCTC 60.859 47.826 0.00 0.00 0.00 3.36
259 260 3.515602 ACCTTTGGCATTTCTGTCTCT 57.484 42.857 0.00 0.00 0.00 3.10
260 261 4.640771 ACCTTTGGCATTTCTGTCTCTA 57.359 40.909 0.00 0.00 0.00 2.43
261 262 5.184892 ACCTTTGGCATTTCTGTCTCTAT 57.815 39.130 0.00 0.00 0.00 1.98
262 263 6.313519 ACCTTTGGCATTTCTGTCTCTATA 57.686 37.500 0.00 0.00 0.00 1.31
263 264 6.904626 ACCTTTGGCATTTCTGTCTCTATAT 58.095 36.000 0.00 0.00 0.00 0.86
264 265 8.034313 ACCTTTGGCATTTCTGTCTCTATATA 57.966 34.615 0.00 0.00 0.00 0.86
265 266 8.494433 ACCTTTGGCATTTCTGTCTCTATATAA 58.506 33.333 0.00 0.00 0.00 0.98
266 267 9.342308 CCTTTGGCATTTCTGTCTCTATATAAA 57.658 33.333 0.00 0.00 0.00 1.40
268 269 7.946655 TGGCATTTCTGTCTCTATATAAACG 57.053 36.000 0.00 0.00 0.00 3.60
269 270 7.722363 TGGCATTTCTGTCTCTATATAAACGA 58.278 34.615 0.00 0.00 0.00 3.85
270 271 7.867909 TGGCATTTCTGTCTCTATATAAACGAG 59.132 37.037 0.00 0.00 0.00 4.18
271 272 7.329717 GGCATTTCTGTCTCTATATAAACGAGG 59.670 40.741 0.00 0.00 0.00 4.63
272 273 8.082852 GCATTTCTGTCTCTATATAAACGAGGA 58.917 37.037 0.00 0.00 0.00 3.71
273 274 9.967346 CATTTCTGTCTCTATATAAACGAGGAA 57.033 33.333 0.00 0.00 0.00 3.36
276 277 8.975663 TCTGTCTCTATATAAACGAGGAAAGA 57.024 34.615 0.00 0.00 0.00 2.52
277 278 9.575868 TCTGTCTCTATATAAACGAGGAAAGAT 57.424 33.333 0.00 0.00 0.00 2.40
278 279 9.619316 CTGTCTCTATATAAACGAGGAAAGATG 57.381 37.037 0.00 0.00 0.00 2.90
279 280 8.577296 TGTCTCTATATAAACGAGGAAAGATGG 58.423 37.037 0.00 0.00 0.00 3.51
280 281 8.794553 GTCTCTATATAAACGAGGAAAGATGGA 58.205 37.037 0.00 0.00 0.00 3.41
281 282 9.363401 TCTCTATATAAACGAGGAAAGATGGAA 57.637 33.333 0.00 0.00 0.00 3.53
283 284 9.929180 TCTATATAAACGAGGAAAGATGGAATG 57.071 33.333 0.00 0.00 0.00 2.67
284 285 5.757850 ATAAACGAGGAAAGATGGAATGC 57.242 39.130 0.00 0.00 0.00 3.56
285 286 1.656652 ACGAGGAAAGATGGAATGCG 58.343 50.000 0.00 0.00 0.00 4.73
286 287 1.207089 ACGAGGAAAGATGGAATGCGA 59.793 47.619 0.00 0.00 0.00 5.10
287 288 1.863454 CGAGGAAAGATGGAATGCGAG 59.137 52.381 0.00 0.00 0.00 5.03
288 289 2.481969 CGAGGAAAGATGGAATGCGAGA 60.482 50.000 0.00 0.00 0.00 4.04
289 290 3.129871 GAGGAAAGATGGAATGCGAGAG 58.870 50.000 0.00 0.00 0.00 3.20
290 291 2.158842 AGGAAAGATGGAATGCGAGAGG 60.159 50.000 0.00 0.00 0.00 3.69
291 292 1.601430 GAAAGATGGAATGCGAGAGGC 59.399 52.381 0.00 0.00 43.96 4.70
292 293 0.179034 AAGATGGAATGCGAGAGGCC 60.179 55.000 0.00 0.00 42.61 5.19
293 294 1.146930 GATGGAATGCGAGAGGCCA 59.853 57.895 5.01 0.00 42.61 5.36
294 295 0.464373 GATGGAATGCGAGAGGCCAA 60.464 55.000 5.01 0.00 42.61 4.52
295 296 0.465097 ATGGAATGCGAGAGGCCAAG 60.465 55.000 5.01 0.00 42.61 3.61
296 297 1.078143 GGAATGCGAGAGGCCAAGT 60.078 57.895 5.01 0.00 42.61 3.16
297 298 1.372087 GGAATGCGAGAGGCCAAGTG 61.372 60.000 5.01 0.00 42.61 3.16
298 299 0.391661 GAATGCGAGAGGCCAAGTGA 60.392 55.000 5.01 0.00 42.61 3.41
299 300 0.254178 AATGCGAGAGGCCAAGTGAT 59.746 50.000 5.01 0.00 42.61 3.06
300 301 1.123077 ATGCGAGAGGCCAAGTGATA 58.877 50.000 5.01 0.00 42.61 2.15
301 302 0.461548 TGCGAGAGGCCAAGTGATAG 59.538 55.000 5.01 0.00 42.61 2.08
302 303 0.747255 GCGAGAGGCCAAGTGATAGA 59.253 55.000 5.01 0.00 34.80 1.98
303 304 1.342819 GCGAGAGGCCAAGTGATAGAT 59.657 52.381 5.01 0.00 34.80 1.98
304 305 2.609244 GCGAGAGGCCAAGTGATAGATC 60.609 54.545 5.01 0.00 34.80 2.75
305 306 2.351253 CGAGAGGCCAAGTGATAGATCG 60.351 54.545 5.01 0.00 0.00 3.69
306 307 1.342819 AGAGGCCAAGTGATAGATCGC 59.657 52.381 5.01 0.00 37.57 4.58
307 308 0.394565 AGGCCAAGTGATAGATCGCC 59.605 55.000 5.01 0.00 38.03 5.54
308 309 0.394565 GGCCAAGTGATAGATCGCCT 59.605 55.000 0.00 0.00 38.03 5.52
309 310 1.202698 GGCCAAGTGATAGATCGCCTT 60.203 52.381 0.00 0.00 38.03 4.35
310 311 1.869767 GCCAAGTGATAGATCGCCTTG 59.130 52.381 11.81 11.81 38.03 3.61
311 312 2.743183 GCCAAGTGATAGATCGCCTTGT 60.743 50.000 15.18 0.00 37.00 3.16
312 313 3.126831 CCAAGTGATAGATCGCCTTGTC 58.873 50.000 15.18 0.00 37.00 3.18
313 314 3.126831 CAAGTGATAGATCGCCTTGTCC 58.873 50.000 11.05 0.00 38.03 4.02
314 315 2.388735 AGTGATAGATCGCCTTGTCCA 58.611 47.619 0.00 0.00 38.03 4.02
315 316 2.766263 AGTGATAGATCGCCTTGTCCAA 59.234 45.455 0.00 0.00 38.03 3.53
316 317 2.866762 GTGATAGATCGCCTTGTCCAAC 59.133 50.000 0.00 0.00 0.00 3.77
317 318 2.499693 TGATAGATCGCCTTGTCCAACA 59.500 45.455 0.00 0.00 0.00 3.33
318 319 3.134623 TGATAGATCGCCTTGTCCAACAT 59.865 43.478 0.00 0.00 0.00 2.71
319 320 4.343814 TGATAGATCGCCTTGTCCAACATA 59.656 41.667 0.00 0.00 0.00 2.29
320 321 3.845781 AGATCGCCTTGTCCAACATAT 57.154 42.857 0.00 0.00 0.00 1.78
321 322 3.733337 AGATCGCCTTGTCCAACATATC 58.267 45.455 0.00 0.00 0.00 1.63
322 323 2.325583 TCGCCTTGTCCAACATATCC 57.674 50.000 0.00 0.00 0.00 2.59
323 324 0.937304 CGCCTTGTCCAACATATCCG 59.063 55.000 0.00 0.00 0.00 4.18
324 325 0.663153 GCCTTGTCCAACATATCCGC 59.337 55.000 0.00 0.00 0.00 5.54
325 326 1.308998 CCTTGTCCAACATATCCGCC 58.691 55.000 0.00 0.00 0.00 6.13
326 327 0.937304 CTTGTCCAACATATCCGCCG 59.063 55.000 0.00 0.00 0.00 6.46
327 328 1.092921 TTGTCCAACATATCCGCCGC 61.093 55.000 0.00 0.00 0.00 6.53
328 329 1.227556 GTCCAACATATCCGCCGCT 60.228 57.895 0.00 0.00 0.00 5.52
329 330 0.814010 GTCCAACATATCCGCCGCTT 60.814 55.000 0.00 0.00 0.00 4.68
330 331 0.813610 TCCAACATATCCGCCGCTTG 60.814 55.000 0.00 0.00 0.00 4.01
331 332 1.095228 CCAACATATCCGCCGCTTGT 61.095 55.000 0.00 0.00 0.00 3.16
332 333 0.027979 CAACATATCCGCCGCTTGTG 59.972 55.000 0.00 0.00 0.00 3.33
333 334 1.714899 AACATATCCGCCGCTTGTGC 61.715 55.000 0.00 0.00 0.00 4.57
334 335 2.179547 CATATCCGCCGCTTGTGCA 61.180 57.895 0.00 0.00 39.64 4.57
335 336 1.451207 ATATCCGCCGCTTGTGCAA 60.451 52.632 0.00 0.00 39.64 4.08
336 337 1.029408 ATATCCGCCGCTTGTGCAAA 61.029 50.000 0.00 0.00 39.64 3.68
337 338 1.917782 TATCCGCCGCTTGTGCAAAC 61.918 55.000 0.00 0.00 39.64 2.93
338 339 4.999939 CCGCCGCTTGTGCAAACC 63.000 66.667 0.00 0.00 39.64 3.27
339 340 4.999939 CGCCGCTTGTGCAAACCC 63.000 66.667 0.00 0.00 39.64 4.11
340 341 3.605664 GCCGCTTGTGCAAACCCT 61.606 61.111 0.00 0.00 39.64 4.34
341 342 2.265182 GCCGCTTGTGCAAACCCTA 61.265 57.895 0.00 0.00 39.64 3.53
342 343 1.579429 CCGCTTGTGCAAACCCTAC 59.421 57.895 0.00 0.00 39.64 3.18
343 344 1.169661 CCGCTTGTGCAAACCCTACA 61.170 55.000 0.00 0.00 39.64 2.74
344 345 0.040425 CGCTTGTGCAAACCCTACAC 60.040 55.000 0.00 0.00 39.64 2.90
345 346 0.313987 GCTTGTGCAAACCCTACACC 59.686 55.000 0.00 0.00 39.41 4.16
346 347 0.958822 CTTGTGCAAACCCTACACCC 59.041 55.000 0.00 0.00 33.30 4.61
347 348 0.553819 TTGTGCAAACCCTACACCCT 59.446 50.000 0.00 0.00 33.30 4.34
348 349 0.553819 TGTGCAAACCCTACACCCTT 59.446 50.000 0.00 0.00 33.30 3.95
349 350 0.958822 GTGCAAACCCTACACCCTTG 59.041 55.000 0.00 0.00 0.00 3.61
350 351 0.553819 TGCAAACCCTACACCCTTGT 59.446 50.000 0.00 0.00 40.02 3.16
362 363 2.124693 CCCTTGTGCAAACCACCGT 61.125 57.895 0.00 0.00 44.01 4.83
363 364 0.820074 CCCTTGTGCAAACCACCGTA 60.820 55.000 0.00 0.00 44.01 4.02
365 366 0.041663 CTTGTGCAAACCACCGTACG 60.042 55.000 8.69 8.69 44.01 3.67
369 370 2.356075 CAAACCACCGTACGCCGA 60.356 61.111 10.49 0.00 39.56 5.54
371 372 3.864160 AAACCACCGTACGCCGACC 62.864 63.158 10.49 0.00 39.56 4.79
433 434 3.003173 CTGGCCGTCCTCCTGGAA 61.003 66.667 0.00 0.00 45.18 3.53
496 498 4.683334 GCGTCGCCTTGCACCAAC 62.683 66.667 5.75 0.00 0.00 3.77
502 504 1.891919 GCCTTGCACCAACTCGACA 60.892 57.895 0.00 0.00 0.00 4.35
504 506 1.507141 CCTTGCACCAACTCGACACC 61.507 60.000 0.00 0.00 0.00 4.16
506 508 3.712881 GCACCAACTCGACACCGC 61.713 66.667 0.00 0.00 35.37 5.68
589 591 1.754803 TCATCGGCTTCGTGGACTATT 59.245 47.619 0.00 0.00 35.06 1.73
590 592 2.128035 CATCGGCTTCGTGGACTATTC 58.872 52.381 0.00 0.00 35.06 1.75
623 625 2.743928 GCTCCCGCCTCACACTTG 60.744 66.667 0.00 0.00 0.00 3.16
708 713 3.726517 CGTTGCAGCTTCACGGGG 61.727 66.667 0.00 0.00 0.00 5.73
709 714 2.281484 GTTGCAGCTTCACGGGGA 60.281 61.111 0.00 0.00 0.00 4.81
711 716 1.152860 TTGCAGCTTCACGGGGAAA 60.153 52.632 0.00 0.00 34.44 3.13
731 736 2.046023 CGGCTGCTGGAACATCCA 60.046 61.111 0.00 0.00 45.98 3.41
916 921 0.461339 GAATTACTCCCCGAAGCGCA 60.461 55.000 11.47 0.00 0.00 6.09
918 923 1.614241 ATTACTCCCCGAAGCGCAGT 61.614 55.000 11.47 4.63 0.00 4.40
954 977 2.830370 CCCGCCATCAAGGAAGGC 60.830 66.667 2.53 2.53 42.21 4.35
1079 1102 1.758936 CAAGCCATTGCATCAGAGGA 58.241 50.000 0.00 0.00 41.13 3.71
1095 1118 4.219070 TCAGAGGATTGGAGCAATTTGTTG 59.781 41.667 0.00 0.00 33.90 3.33
1106 1129 3.055530 AGCAATTTGTTGGGTTGTGTGAA 60.056 39.130 0.00 0.00 0.00 3.18
1107 1130 3.309410 GCAATTTGTTGGGTTGTGTGAAG 59.691 43.478 0.00 0.00 0.00 3.02
1115 1138 1.065998 GGGTTGTGTGAAGCCCGTATA 60.066 52.381 0.00 0.00 0.00 1.47
1145 1168 0.591236 CGTTTGTTCCAAGCGTGTGG 60.591 55.000 5.25 0.00 40.33 4.17
1177 1200 2.615912 GGATGCTTGTACTGGAAGATGC 59.384 50.000 0.00 0.00 37.43 3.91
1231 1254 3.863041 AGGGAAGTTATGCTCGTTCTTC 58.137 45.455 0.00 0.00 35.29 2.87
1238 1261 1.512926 ATGCTCGTTCTTCACACCAC 58.487 50.000 0.00 0.00 0.00 4.16
1246 1269 1.627864 TCTTCACACCACGAGGATGA 58.372 50.000 5.68 6.20 38.69 2.92
1311 1334 2.683742 CGGAGGCTTTGGTATTGTGGAT 60.684 50.000 0.00 0.00 0.00 3.41
1325 1348 2.360191 GGATGCAGGGGAAGGCAA 59.640 61.111 0.00 0.00 44.20 4.52
1364 1387 4.979268 TCATTCGAATGATGGCACACTAGG 60.979 45.833 31.83 6.40 40.32 3.02
1420 1449 6.779539 TGAGTGGCAGATAGAGAAGATAATCA 59.220 38.462 0.00 0.00 0.00 2.57
1520 1549 4.378770 CGACTTCATGACATTTCAGGTTGG 60.379 45.833 0.00 0.00 34.98 3.77
1563 1592 5.690409 TGAATGTTTCTCACTAGTCGTCAAC 59.310 40.000 0.00 0.00 0.00 3.18
1595 1624 3.475566 TGAGAGGGTGTGTGAGAAAAG 57.524 47.619 0.00 0.00 0.00 2.27
1670 1700 7.985184 GTCAAGGACAGTATGAAATGGTATACA 59.015 37.037 5.01 0.00 39.69 2.29
1671 1701 8.713971 TCAAGGACAGTATGAAATGGTATACAT 58.286 33.333 5.01 0.00 39.50 2.29
1835 1874 1.280133 AGCAGGCTTAGAGTCATTGCA 59.720 47.619 0.00 0.00 32.79 4.08
1945 1994 3.976942 GTGTTACTGAAATGTTGCTGCAG 59.023 43.478 10.11 10.11 0.00 4.41
1979 2028 3.118038 TGTTTTGTCTGTACCCTGAAGCT 60.118 43.478 0.00 0.00 0.00 3.74
2007 2056 7.536281 GTCGTTACCTATGTGAATTTTGTTTCC 59.464 37.037 0.00 0.00 0.00 3.13
2144 2469 4.015764 TGCTATTGCTTGCCTTATCAACA 58.984 39.130 0.00 0.00 40.48 3.33
2164 2489 5.977489 ACATGTTGTACTGTGACTAGCTA 57.023 39.130 0.00 0.00 0.00 3.32
2246 2572 7.945033 TGACTTTGTTTTCAATTAGAATGGC 57.055 32.000 0.00 0.00 39.70 4.40
2252 2578 7.440198 TTGTTTTCAATTAGAATGGCACATGA 58.560 30.769 0.00 0.00 37.86 3.07
2363 2689 4.491676 AGTGCTCATCATTGTTTTCATGC 58.508 39.130 0.00 0.00 0.00 4.06
2405 2731 0.896940 CAGAATTGCCTGGCCTGTGT 60.897 55.000 17.53 0.00 0.00 3.72
2410 2777 2.203337 GCCTGGCCTGTGTGTGAA 60.203 61.111 7.66 0.00 0.00 3.18
2430 2797 4.907879 AAGAAAAGCTTCAGAAGGTGTG 57.092 40.909 15.65 0.00 39.57 3.82
2461 2828 1.829849 CATCCTGAAGAGTGAGAGGCA 59.170 52.381 0.00 0.00 0.00 4.75
2527 3429 5.193930 TCTCTGGTGGAAGTTCTATCCTAGA 59.806 44.000 2.25 0.24 37.85 2.43
2623 3525 7.815840 TTCTGTCATCTTGTTTATGTTTGGA 57.184 32.000 0.00 0.00 0.00 3.53
2646 3549 7.012327 TGGAAACAACTTGTTGAACTCTATCTG 59.988 37.037 18.82 0.00 40.14 2.90
2651 3554 8.099537 ACAACTTGTTGAACTCTATCTGATCAT 58.900 33.333 18.82 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.252599 AGTCCTTACAATCATTGGATGCTA 57.747 37.500 1.58 0.00 32.92 3.49
1 2 5.121380 AGTCCTTACAATCATTGGATGCT 57.879 39.130 1.58 0.00 32.92 3.79
2 3 5.841957 AAGTCCTTACAATCATTGGATGC 57.158 39.130 1.58 0.00 32.92 3.91
4 5 6.947733 TCACAAAGTCCTTACAATCATTGGAT 59.052 34.615 1.58 0.00 34.43 3.41
6 7 6.573664 TCACAAAGTCCTTACAATCATTGG 57.426 37.500 1.58 0.00 34.12 3.16
7 8 8.298854 TCAATCACAAAGTCCTTACAATCATTG 58.701 33.333 0.00 0.00 0.00 2.82
9 10 8.585471 ATCAATCACAAAGTCCTTACAATCAT 57.415 30.769 0.00 0.00 0.00 2.45
10 11 8.408043 AATCAATCACAAAGTCCTTACAATCA 57.592 30.769 0.00 0.00 0.00 2.57
19 20 9.023967 GCAATGTATTAATCAATCACAAAGTCC 57.976 33.333 0.00 0.00 0.00 3.85
20 21 9.793252 AGCAATGTATTAATCAATCACAAAGTC 57.207 29.630 0.00 0.00 0.00 3.01
30 31 8.349245 CGGGTGAAATAGCAATGTATTAATCAA 58.651 33.333 0.00 0.00 0.00 2.57
31 32 7.717436 TCGGGTGAAATAGCAATGTATTAATCA 59.283 33.333 0.00 0.00 0.00 2.57
32 33 8.094798 TCGGGTGAAATAGCAATGTATTAATC 57.905 34.615 0.00 0.00 0.00 1.75
33 34 8.458573 TTCGGGTGAAATAGCAATGTATTAAT 57.541 30.769 0.00 0.00 0.00 1.40
34 35 7.867305 TTCGGGTGAAATAGCAATGTATTAA 57.133 32.000 0.00 0.00 0.00 1.40
35 36 7.867305 TTTCGGGTGAAATAGCAATGTATTA 57.133 32.000 0.00 0.00 39.13 0.98
36 37 6.767524 TTTCGGGTGAAATAGCAATGTATT 57.232 33.333 0.00 0.00 39.13 1.89
37 38 6.767524 TTTTCGGGTGAAATAGCAATGTAT 57.232 33.333 0.00 0.00 43.32 2.29
38 39 6.576662 TTTTTCGGGTGAAATAGCAATGTA 57.423 33.333 0.00 0.00 43.32 2.29
39 40 5.461032 TTTTTCGGGTGAAATAGCAATGT 57.539 34.783 0.00 0.00 43.32 2.71
71 72 0.393267 TGGCCGCTTTACATGGGTAC 60.393 55.000 0.00 0.00 0.00 3.34
72 73 0.548989 ATGGCCGCTTTACATGGGTA 59.451 50.000 0.00 0.00 0.00 3.69
73 74 1.037030 CATGGCCGCTTTACATGGGT 61.037 55.000 0.00 0.00 38.58 4.51
74 75 0.751277 TCATGGCCGCTTTACATGGG 60.751 55.000 0.00 0.00 41.64 4.00
75 76 1.321474 ATCATGGCCGCTTTACATGG 58.679 50.000 0.00 0.00 41.64 3.66
76 77 3.565482 ACTAATCATGGCCGCTTTACATG 59.435 43.478 0.00 0.00 42.44 3.21
77 78 3.815401 GACTAATCATGGCCGCTTTACAT 59.185 43.478 0.00 0.00 0.00 2.29
78 79 3.118408 AGACTAATCATGGCCGCTTTACA 60.118 43.478 0.00 0.00 0.00 2.41
79 80 3.467803 AGACTAATCATGGCCGCTTTAC 58.532 45.455 0.00 0.00 0.00 2.01
80 81 3.494398 GGAGACTAATCATGGCCGCTTTA 60.494 47.826 0.00 0.00 0.00 1.85
81 82 2.565841 GAGACTAATCATGGCCGCTTT 58.434 47.619 0.00 0.00 0.00 3.51
82 83 1.202698 GGAGACTAATCATGGCCGCTT 60.203 52.381 0.00 0.00 0.00 4.68
83 84 0.394565 GGAGACTAATCATGGCCGCT 59.605 55.000 0.00 0.00 0.00 5.52
84 85 0.394565 AGGAGACTAATCATGGCCGC 59.605 55.000 0.00 0.00 40.61 6.53
85 86 1.336332 CGAGGAGACTAATCATGGCCG 60.336 57.143 0.00 0.00 44.43 6.13
86 87 1.689273 ACGAGGAGACTAATCATGGCC 59.311 52.381 0.00 0.00 44.43 5.36
87 88 2.546795 CCACGAGGAGACTAATCATGGC 60.547 54.545 0.00 0.00 44.43 4.40
88 89 2.695666 ACCACGAGGAGACTAATCATGG 59.304 50.000 5.68 1.07 44.43 3.66
89 90 3.491619 CCACCACGAGGAGACTAATCATG 60.492 52.174 5.68 0.00 44.43 3.07
90 91 2.695666 CCACCACGAGGAGACTAATCAT 59.304 50.000 5.68 0.00 44.43 2.45
91 92 2.100197 CCACCACGAGGAGACTAATCA 58.900 52.381 5.68 0.00 44.43 2.57
92 93 1.409427 CCCACCACGAGGAGACTAATC 59.591 57.143 5.68 0.00 44.43 1.75
93 94 1.006758 TCCCACCACGAGGAGACTAAT 59.993 52.381 5.68 0.00 44.43 1.73
94 95 0.406750 TCCCACCACGAGGAGACTAA 59.593 55.000 5.68 0.00 44.43 2.24
95 96 0.406750 TTCCCACCACGAGGAGACTA 59.593 55.000 5.68 0.00 44.43 2.59
97 98 0.898789 TCTTCCCACCACGAGGAGAC 60.899 60.000 5.68 0.00 38.69 3.36
98 99 0.612174 CTCTTCCCACCACGAGGAGA 60.612 60.000 5.68 0.00 35.95 3.71
99 100 1.608717 CCTCTTCCCACCACGAGGAG 61.609 65.000 5.68 0.00 44.56 3.69
100 101 1.609501 CCTCTTCCCACCACGAGGA 60.610 63.158 5.68 0.00 44.56 3.71
101 102 1.608717 CTCCTCTTCCCACCACGAGG 61.609 65.000 0.00 0.00 43.44 4.63
102 103 0.612174 TCTCCTCTTCCCACCACGAG 60.612 60.000 0.00 0.00 0.00 4.18
103 104 0.178944 TTCTCCTCTTCCCACCACGA 60.179 55.000 0.00 0.00 0.00 4.35
104 105 0.247736 CTTCTCCTCTTCCCACCACG 59.752 60.000 0.00 0.00 0.00 4.94
105 106 0.615850 CCTTCTCCTCTTCCCACCAC 59.384 60.000 0.00 0.00 0.00 4.16
106 107 1.201429 GCCTTCTCCTCTTCCCACCA 61.201 60.000 0.00 0.00 0.00 4.17
107 108 0.912006 AGCCTTCTCCTCTTCCCACC 60.912 60.000 0.00 0.00 0.00 4.61
108 109 1.760029 CTAGCCTTCTCCTCTTCCCAC 59.240 57.143 0.00 0.00 0.00 4.61
109 110 1.967274 GCTAGCCTTCTCCTCTTCCCA 60.967 57.143 2.29 0.00 0.00 4.37
110 111 0.756294 GCTAGCCTTCTCCTCTTCCC 59.244 60.000 2.29 0.00 0.00 3.97
111 112 1.788229 AGCTAGCCTTCTCCTCTTCC 58.212 55.000 12.13 0.00 0.00 3.46
112 113 2.890945 CCTAGCTAGCCTTCTCCTCTTC 59.109 54.545 15.74 0.00 0.00 2.87
113 114 2.425683 CCCTAGCTAGCCTTCTCCTCTT 60.426 54.545 15.74 0.00 0.00 2.85
114 115 1.146982 CCCTAGCTAGCCTTCTCCTCT 59.853 57.143 15.74 0.00 0.00 3.69
115 116 1.627864 CCCTAGCTAGCCTTCTCCTC 58.372 60.000 15.74 0.00 0.00 3.71
116 117 0.471022 GCCCTAGCTAGCCTTCTCCT 60.471 60.000 15.74 0.00 35.50 3.69
117 118 1.811645 CGCCCTAGCTAGCCTTCTCC 61.812 65.000 15.74 0.00 36.60 3.71
118 119 1.663173 CGCCCTAGCTAGCCTTCTC 59.337 63.158 15.74 0.00 36.60 2.87
119 120 1.834822 CCGCCCTAGCTAGCCTTCT 60.835 63.158 15.74 0.00 36.60 2.85
120 121 2.737830 CCGCCCTAGCTAGCCTTC 59.262 66.667 15.74 2.89 36.60 3.46
121 122 3.551407 GCCGCCCTAGCTAGCCTT 61.551 66.667 15.74 0.00 36.60 4.35
122 123 4.548513 AGCCGCCCTAGCTAGCCT 62.549 66.667 15.74 1.20 39.29 4.58
123 124 4.306967 CAGCCGCCCTAGCTAGCC 62.307 72.222 15.74 7.34 38.95 3.93
124 125 4.978863 GCAGCCGCCCTAGCTAGC 62.979 72.222 15.74 6.62 38.95 3.42
125 126 2.876945 ATGCAGCCGCCCTAGCTAG 61.877 63.158 14.20 14.20 38.95 3.42
126 127 2.844362 ATGCAGCCGCCCTAGCTA 60.844 61.111 0.00 0.00 38.95 3.32
127 128 4.559063 CATGCAGCCGCCCTAGCT 62.559 66.667 0.00 0.00 42.70 3.32
137 138 1.134580 TCCTTCTCACTAGCATGCAGC 60.135 52.381 21.98 0.00 46.19 5.25
138 139 2.975732 TCCTTCTCACTAGCATGCAG 57.024 50.000 21.98 16.92 0.00 4.41
139 140 2.093288 CCTTCCTTCTCACTAGCATGCA 60.093 50.000 21.98 5.01 0.00 3.96
140 141 2.559440 CCTTCCTTCTCACTAGCATGC 58.441 52.381 10.51 10.51 0.00 4.06
141 142 2.559440 GCCTTCCTTCTCACTAGCATG 58.441 52.381 0.00 0.00 0.00 4.06
142 143 1.137872 CGCCTTCCTTCTCACTAGCAT 59.862 52.381 0.00 0.00 0.00 3.79
143 144 0.532573 CGCCTTCCTTCTCACTAGCA 59.467 55.000 0.00 0.00 0.00 3.49
144 145 0.818296 TCGCCTTCCTTCTCACTAGC 59.182 55.000 0.00 0.00 0.00 3.42
145 146 2.357637 CTCTCGCCTTCCTTCTCACTAG 59.642 54.545 0.00 0.00 0.00 2.57
146 147 2.370349 CTCTCGCCTTCCTTCTCACTA 58.630 52.381 0.00 0.00 0.00 2.74
147 148 1.181786 CTCTCGCCTTCCTTCTCACT 58.818 55.000 0.00 0.00 0.00 3.41
148 149 0.174617 CCTCTCGCCTTCCTTCTCAC 59.825 60.000 0.00 0.00 0.00 3.51
149 150 0.251832 ACCTCTCGCCTTCCTTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
150 151 0.899019 AACCTCTCGCCTTCCTTCTC 59.101 55.000 0.00 0.00 0.00 2.87
151 152 0.899019 GAACCTCTCGCCTTCCTTCT 59.101 55.000 0.00 0.00 0.00 2.85
152 153 0.458716 CGAACCTCTCGCCTTCCTTC 60.459 60.000 0.00 0.00 41.49 3.46
153 154 1.592223 CGAACCTCTCGCCTTCCTT 59.408 57.895 0.00 0.00 41.49 3.36
154 155 2.352032 CCGAACCTCTCGCCTTCCT 61.352 63.158 0.00 0.00 46.71 3.36
155 156 2.184579 CCGAACCTCTCGCCTTCC 59.815 66.667 0.00 0.00 46.71 3.46
156 157 2.509561 GCCGAACCTCTCGCCTTC 60.510 66.667 0.00 0.00 46.71 3.46
157 158 4.436998 CGCCGAACCTCTCGCCTT 62.437 66.667 0.00 0.00 46.71 4.35
160 161 4.856607 CTCCGCCGAACCTCTCGC 62.857 72.222 0.00 0.00 46.71 5.03
162 163 4.516195 GCCTCCGCCGAACCTCTC 62.516 72.222 0.00 0.00 0.00 3.20
179 180 3.456431 TTCAACACAAACGCGCGGG 62.456 57.895 35.22 24.28 0.00 6.13
180 181 2.003443 CTTCAACACAAACGCGCGG 61.003 57.895 35.22 19.11 0.00 6.46
181 182 1.253044 GACTTCAACACAAACGCGCG 61.253 55.000 30.96 30.96 0.00 6.86
182 183 0.247894 TGACTTCAACACAAACGCGC 60.248 50.000 5.73 0.00 0.00 6.86
183 184 1.730176 CTGACTTCAACACAAACGCG 58.270 50.000 3.53 3.53 0.00 6.01
184 185 1.466855 GCTGACTTCAACACAAACGC 58.533 50.000 0.00 0.00 0.00 4.84
185 186 1.062002 ACGCTGACTTCAACACAAACG 59.938 47.619 0.00 0.00 0.00 3.60
186 187 2.440501 CACGCTGACTTCAACACAAAC 58.559 47.619 0.00 0.00 0.00 2.93
187 188 1.202132 GCACGCTGACTTCAACACAAA 60.202 47.619 0.00 0.00 0.00 2.83
188 189 0.376852 GCACGCTGACTTCAACACAA 59.623 50.000 0.00 0.00 0.00 3.33
189 190 0.461870 AGCACGCTGACTTCAACACA 60.462 50.000 0.00 0.00 0.00 3.72
190 191 0.041839 CAGCACGCTGACTTCAACAC 60.042 55.000 13.87 0.00 46.30 3.32
191 192 0.179086 TCAGCACGCTGACTTCAACA 60.179 50.000 17.54 0.00 46.80 3.33
192 193 2.605094 TCAGCACGCTGACTTCAAC 58.395 52.632 17.54 0.00 46.80 3.18
200 201 1.128136 CAACTCAGAATCAGCACGCTG 59.872 52.381 12.91 12.91 44.86 5.18
201 202 1.436600 CAACTCAGAATCAGCACGCT 58.563 50.000 0.00 0.00 0.00 5.07
202 203 0.179205 GCAACTCAGAATCAGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
203 204 0.094216 CGCAACTCAGAATCAGCACG 59.906 55.000 0.00 0.00 0.00 5.34
204 205 1.151668 ACGCAACTCAGAATCAGCAC 58.848 50.000 0.00 0.00 0.00 4.40
205 206 1.800586 GAACGCAACTCAGAATCAGCA 59.199 47.619 0.00 0.00 0.00 4.41
206 207 1.800586 TGAACGCAACTCAGAATCAGC 59.199 47.619 0.00 0.00 0.00 4.26
207 208 2.802247 TGTGAACGCAACTCAGAATCAG 59.198 45.455 0.00 0.00 0.00 2.90
208 209 2.543848 GTGTGAACGCAACTCAGAATCA 59.456 45.455 0.00 0.00 0.00 2.57
209 210 2.096218 GGTGTGAACGCAACTCAGAATC 60.096 50.000 0.00 0.00 0.00 2.52
210 211 1.873591 GGTGTGAACGCAACTCAGAAT 59.126 47.619 0.00 0.00 0.00 2.40
211 212 1.134521 AGGTGTGAACGCAACTCAGAA 60.135 47.619 0.00 0.00 28.85 3.02
212 213 0.464036 AGGTGTGAACGCAACTCAGA 59.536 50.000 0.00 0.00 28.85 3.27
213 214 2.992089 AGGTGTGAACGCAACTCAG 58.008 52.632 0.00 0.00 28.85 3.35
215 216 0.596600 TCGAGGTGTGAACGCAACTC 60.597 55.000 19.45 19.45 46.63 3.01
216 217 0.033504 ATCGAGGTGTGAACGCAACT 59.966 50.000 5.59 5.59 39.44 3.16
217 218 0.163788 CATCGAGGTGTGAACGCAAC 59.836 55.000 0.00 0.00 0.00 4.17
218 219 1.565156 GCATCGAGGTGTGAACGCAA 61.565 55.000 0.00 0.00 0.00 4.85
219 220 2.027073 GCATCGAGGTGTGAACGCA 61.027 57.895 0.00 0.00 0.00 5.24
220 221 1.565156 TTGCATCGAGGTGTGAACGC 61.565 55.000 0.00 0.00 0.00 4.84
221 222 0.163788 GTTGCATCGAGGTGTGAACG 59.836 55.000 0.00 0.00 0.00 3.95
222 223 0.517316 GGTTGCATCGAGGTGTGAAC 59.483 55.000 0.00 0.00 0.00 3.18
223 224 0.396435 AGGTTGCATCGAGGTGTGAA 59.604 50.000 0.00 0.00 0.00 3.18
224 225 0.396435 AAGGTTGCATCGAGGTGTGA 59.604 50.000 0.00 0.00 0.00 3.58
225 226 1.069022 CAAAGGTTGCATCGAGGTGTG 60.069 52.381 0.00 0.00 0.00 3.82
226 227 1.238439 CAAAGGTTGCATCGAGGTGT 58.762 50.000 0.00 0.00 0.00 4.16
227 228 0.523072 CCAAAGGTTGCATCGAGGTG 59.477 55.000 0.00 0.00 0.00 4.00
228 229 1.244019 GCCAAAGGTTGCATCGAGGT 61.244 55.000 0.00 0.00 0.00 3.85
229 230 1.243342 TGCCAAAGGTTGCATCGAGG 61.243 55.000 0.00 0.00 31.31 4.63
230 231 0.813184 ATGCCAAAGGTTGCATCGAG 59.187 50.000 0.00 0.00 44.58 4.04
231 232 1.255882 AATGCCAAAGGTTGCATCGA 58.744 45.000 0.00 0.00 46.97 3.59
232 233 1.994779 GAAATGCCAAAGGTTGCATCG 59.005 47.619 0.00 0.00 46.97 3.84
233 234 2.997986 CAGAAATGCCAAAGGTTGCATC 59.002 45.455 0.00 0.00 46.97 3.91
235 236 1.761784 ACAGAAATGCCAAAGGTTGCA 59.238 42.857 0.00 0.00 42.52 4.08
236 237 2.036346 AGACAGAAATGCCAAAGGTTGC 59.964 45.455 0.00 0.00 0.00 4.17
237 238 3.571401 AGAGACAGAAATGCCAAAGGTTG 59.429 43.478 0.00 0.00 0.00 3.77
238 239 3.837355 AGAGACAGAAATGCCAAAGGTT 58.163 40.909 0.00 0.00 0.00 3.50
239 240 3.515602 AGAGACAGAAATGCCAAAGGT 57.484 42.857 0.00 0.00 0.00 3.50
240 241 8.908786 TTATATAGAGACAGAAATGCCAAAGG 57.091 34.615 0.00 0.00 0.00 3.11
242 243 8.826710 CGTTTATATAGAGACAGAAATGCCAAA 58.173 33.333 0.00 0.00 0.00 3.28
243 244 8.201464 TCGTTTATATAGAGACAGAAATGCCAA 58.799 33.333 0.00 0.00 0.00 4.52
244 245 7.722363 TCGTTTATATAGAGACAGAAATGCCA 58.278 34.615 0.00 0.00 0.00 4.92
245 246 7.329717 CCTCGTTTATATAGAGACAGAAATGCC 59.670 40.741 0.23 0.00 34.13 4.40
246 247 8.082852 TCCTCGTTTATATAGAGACAGAAATGC 58.917 37.037 0.23 0.00 34.13 3.56
247 248 9.967346 TTCCTCGTTTATATAGAGACAGAAATG 57.033 33.333 0.23 0.00 34.13 2.32
250 251 9.404848 TCTTTCCTCGTTTATATAGAGACAGAA 57.595 33.333 0.23 0.00 34.13 3.02
251 252 8.975663 TCTTTCCTCGTTTATATAGAGACAGA 57.024 34.615 0.23 0.00 34.13 3.41
252 253 9.619316 CATCTTTCCTCGTTTATATAGAGACAG 57.381 37.037 0.23 0.00 34.13 3.51
253 254 8.577296 CCATCTTTCCTCGTTTATATAGAGACA 58.423 37.037 0.23 0.00 34.13 3.41
254 255 8.794553 TCCATCTTTCCTCGTTTATATAGAGAC 58.205 37.037 0.23 0.00 34.13 3.36
255 256 8.935614 TCCATCTTTCCTCGTTTATATAGAGA 57.064 34.615 0.23 0.00 34.13 3.10
257 258 9.929180 CATTCCATCTTTCCTCGTTTATATAGA 57.071 33.333 0.00 0.00 0.00 1.98
258 259 8.660373 GCATTCCATCTTTCCTCGTTTATATAG 58.340 37.037 0.00 0.00 0.00 1.31
259 260 7.330946 CGCATTCCATCTTTCCTCGTTTATATA 59.669 37.037 0.00 0.00 0.00 0.86
260 261 6.147821 CGCATTCCATCTTTCCTCGTTTATAT 59.852 38.462 0.00 0.00 0.00 0.86
261 262 5.465390 CGCATTCCATCTTTCCTCGTTTATA 59.535 40.000 0.00 0.00 0.00 0.98
262 263 4.273480 CGCATTCCATCTTTCCTCGTTTAT 59.727 41.667 0.00 0.00 0.00 1.40
263 264 3.621268 CGCATTCCATCTTTCCTCGTTTA 59.379 43.478 0.00 0.00 0.00 2.01
264 265 2.420022 CGCATTCCATCTTTCCTCGTTT 59.580 45.455 0.00 0.00 0.00 3.60
265 266 2.009774 CGCATTCCATCTTTCCTCGTT 58.990 47.619 0.00 0.00 0.00 3.85
266 267 1.207089 TCGCATTCCATCTTTCCTCGT 59.793 47.619 0.00 0.00 0.00 4.18
267 268 1.863454 CTCGCATTCCATCTTTCCTCG 59.137 52.381 0.00 0.00 0.00 4.63
268 269 3.129871 CTCTCGCATTCCATCTTTCCTC 58.870 50.000 0.00 0.00 0.00 3.71
269 270 2.158842 CCTCTCGCATTCCATCTTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
270 271 2.216898 CCTCTCGCATTCCATCTTTCC 58.783 52.381 0.00 0.00 0.00 3.13
271 272 1.601430 GCCTCTCGCATTCCATCTTTC 59.399 52.381 0.00 0.00 37.47 2.62
272 273 1.673168 GCCTCTCGCATTCCATCTTT 58.327 50.000 0.00 0.00 37.47 2.52
273 274 0.179034 GGCCTCTCGCATTCCATCTT 60.179 55.000 0.00 0.00 40.31 2.40
274 275 1.340399 TGGCCTCTCGCATTCCATCT 61.340 55.000 3.32 0.00 40.31 2.90
275 276 0.464373 TTGGCCTCTCGCATTCCATC 60.464 55.000 3.32 0.00 40.31 3.51
276 277 0.465097 CTTGGCCTCTCGCATTCCAT 60.465 55.000 3.32 0.00 40.31 3.41
277 278 1.078214 CTTGGCCTCTCGCATTCCA 60.078 57.895 3.32 0.00 40.31 3.53
278 279 1.078143 ACTTGGCCTCTCGCATTCC 60.078 57.895 3.32 0.00 40.31 3.01
279 280 0.391661 TCACTTGGCCTCTCGCATTC 60.392 55.000 3.32 0.00 40.31 2.67
280 281 0.254178 ATCACTTGGCCTCTCGCATT 59.746 50.000 3.32 0.00 40.31 3.56
281 282 1.069823 CTATCACTTGGCCTCTCGCAT 59.930 52.381 3.32 0.00 40.31 4.73
282 283 0.461548 CTATCACTTGGCCTCTCGCA 59.538 55.000 3.32 0.00 40.31 5.10
283 284 0.747255 TCTATCACTTGGCCTCTCGC 59.253 55.000 3.32 0.00 0.00 5.03
284 285 2.351253 CGATCTATCACTTGGCCTCTCG 60.351 54.545 3.32 0.00 0.00 4.04
285 286 2.609244 GCGATCTATCACTTGGCCTCTC 60.609 54.545 3.32 0.00 0.00 3.20
286 287 1.342819 GCGATCTATCACTTGGCCTCT 59.657 52.381 3.32 0.00 0.00 3.69
287 288 1.606737 GGCGATCTATCACTTGGCCTC 60.607 57.143 3.32 0.00 36.21 4.70
288 289 0.394565 GGCGATCTATCACTTGGCCT 59.605 55.000 3.32 0.00 36.21 5.19
289 290 0.394565 AGGCGATCTATCACTTGGCC 59.605 55.000 0.00 0.00 39.33 5.36
290 291 1.869767 CAAGGCGATCTATCACTTGGC 59.130 52.381 12.90 0.75 37.58 4.52
291 292 3.126831 GACAAGGCGATCTATCACTTGG 58.873 50.000 19.84 9.05 41.66 3.61
292 293 3.126831 GGACAAGGCGATCTATCACTTG 58.873 50.000 16.61 16.61 42.37 3.16
293 294 2.766263 TGGACAAGGCGATCTATCACTT 59.234 45.455 0.00 0.00 0.00 3.16
294 295 2.388735 TGGACAAGGCGATCTATCACT 58.611 47.619 0.00 0.00 0.00 3.41
295 296 2.866762 GTTGGACAAGGCGATCTATCAC 59.133 50.000 0.00 0.00 0.00 3.06
296 297 2.499693 TGTTGGACAAGGCGATCTATCA 59.500 45.455 0.00 0.00 0.00 2.15
297 298 3.179443 TGTTGGACAAGGCGATCTATC 57.821 47.619 0.00 0.00 0.00 2.08
298 299 3.845781 ATGTTGGACAAGGCGATCTAT 57.154 42.857 0.00 0.00 0.00 1.98
299 300 4.262463 GGATATGTTGGACAAGGCGATCTA 60.262 45.833 0.00 0.00 0.00 1.98
300 301 3.495100 GGATATGTTGGACAAGGCGATCT 60.495 47.826 0.00 0.00 0.00 2.75
301 302 2.808543 GGATATGTTGGACAAGGCGATC 59.191 50.000 0.00 0.00 0.00 3.69
302 303 2.806745 CGGATATGTTGGACAAGGCGAT 60.807 50.000 0.00 0.00 0.00 4.58
303 304 1.472552 CGGATATGTTGGACAAGGCGA 60.473 52.381 0.00 0.00 0.00 5.54
304 305 0.937304 CGGATATGTTGGACAAGGCG 59.063 55.000 0.00 0.00 0.00 5.52
305 306 0.663153 GCGGATATGTTGGACAAGGC 59.337 55.000 0.00 0.00 0.00 4.35
306 307 1.308998 GGCGGATATGTTGGACAAGG 58.691 55.000 0.00 0.00 0.00 3.61
307 308 0.937304 CGGCGGATATGTTGGACAAG 59.063 55.000 0.00 0.00 0.00 3.16
308 309 1.092921 GCGGCGGATATGTTGGACAA 61.093 55.000 9.78 0.00 0.00 3.18
309 310 1.522806 GCGGCGGATATGTTGGACA 60.523 57.895 9.78 0.00 0.00 4.02
310 311 0.814010 AAGCGGCGGATATGTTGGAC 60.814 55.000 9.78 0.00 0.00 4.02
311 312 0.813610 CAAGCGGCGGATATGTTGGA 60.814 55.000 9.78 0.00 0.00 3.53
312 313 1.095228 ACAAGCGGCGGATATGTTGG 61.095 55.000 9.78 0.00 0.00 3.77
313 314 0.027979 CACAAGCGGCGGATATGTTG 59.972 55.000 9.78 0.00 0.00 3.33
314 315 1.714899 GCACAAGCGGCGGATATGTT 61.715 55.000 9.78 0.00 0.00 2.71
315 316 2.180204 GCACAAGCGGCGGATATGT 61.180 57.895 9.78 0.00 0.00 2.29
316 317 1.713937 TTGCACAAGCGGCGGATATG 61.714 55.000 9.78 0.00 46.23 1.78
317 318 1.029408 TTTGCACAAGCGGCGGATAT 61.029 50.000 9.78 0.00 46.23 1.63
318 319 1.672682 TTTGCACAAGCGGCGGATA 60.673 52.632 9.78 0.00 46.23 2.59
319 320 2.983030 TTTGCACAAGCGGCGGAT 60.983 55.556 9.78 0.00 46.23 4.18
320 321 3.959975 GTTTGCACAAGCGGCGGA 61.960 61.111 9.78 0.00 46.23 5.54
321 322 4.999939 GGTTTGCACAAGCGGCGG 63.000 66.667 9.78 0.00 46.23 6.13
322 323 4.999939 GGGTTTGCACAAGCGGCG 63.000 66.667 0.51 0.51 46.23 6.46
323 324 2.265182 TAGGGTTTGCACAAGCGGC 61.265 57.895 0.00 0.00 46.23 6.53
324 325 1.169661 TGTAGGGTTTGCACAAGCGG 61.170 55.000 0.00 0.00 46.23 5.52
325 326 0.040425 GTGTAGGGTTTGCACAAGCG 60.040 55.000 0.00 0.00 46.23 4.68
326 327 0.313987 GGTGTAGGGTTTGCACAAGC 59.686 55.000 0.00 0.00 43.39 4.01
327 328 0.958822 GGGTGTAGGGTTTGCACAAG 59.041 55.000 0.00 0.00 43.39 3.16
328 329 0.553819 AGGGTGTAGGGTTTGCACAA 59.446 50.000 0.00 0.00 43.39 3.33
329 330 0.553819 AAGGGTGTAGGGTTTGCACA 59.446 50.000 0.00 0.00 43.39 4.57
330 331 0.958822 CAAGGGTGTAGGGTTTGCAC 59.041 55.000 0.00 0.00 41.17 4.57
331 332 0.553819 ACAAGGGTGTAGGGTTTGCA 59.446 50.000 0.00 0.00 35.72 4.08
332 333 0.958822 CACAAGGGTGTAGGGTTTGC 59.041 55.000 0.00 0.00 40.24 3.68
333 334 0.958822 GCACAAGGGTGTAGGGTTTG 59.041 55.000 0.00 0.00 46.95 2.93
334 335 0.553819 TGCACAAGGGTGTAGGGTTT 59.446 50.000 0.00 0.00 46.95 3.27
335 336 0.553819 TTGCACAAGGGTGTAGGGTT 59.446 50.000 0.00 0.00 46.95 4.11
336 337 0.553819 TTTGCACAAGGGTGTAGGGT 59.446 50.000 0.00 0.00 46.95 4.34
337 338 0.958822 GTTTGCACAAGGGTGTAGGG 59.041 55.000 0.00 0.00 46.95 3.53
338 339 0.958822 GGTTTGCACAAGGGTGTAGG 59.041 55.000 0.00 0.00 46.95 3.18
339 340 1.336755 GTGGTTTGCACAAGGGTGTAG 59.663 52.381 0.00 0.00 46.95 2.74
340 341 1.394618 GTGGTTTGCACAAGGGTGTA 58.605 50.000 0.00 0.00 46.95 2.90
341 342 1.326951 GGTGGTTTGCACAAGGGTGT 61.327 55.000 0.00 0.00 46.95 4.16
343 344 2.124693 CGGTGGTTTGCACAAGGGT 61.125 57.895 0.00 0.00 0.00 4.34
344 345 0.820074 TACGGTGGTTTGCACAAGGG 60.820 55.000 0.00 0.00 0.00 3.95
345 346 0.309612 GTACGGTGGTTTGCACAAGG 59.690 55.000 0.00 0.00 0.00 3.61
346 347 0.041663 CGTACGGTGGTTTGCACAAG 60.042 55.000 7.57 0.00 0.00 3.16
347 348 2.015382 CGTACGGTGGTTTGCACAA 58.985 52.632 7.57 0.00 0.00 3.33
348 349 2.535788 GCGTACGGTGGTTTGCACA 61.536 57.895 18.39 0.00 0.00 4.57
349 350 2.250190 GCGTACGGTGGTTTGCAC 59.750 61.111 18.39 0.00 0.00 4.57
350 351 2.973600 GGCGTACGGTGGTTTGCA 60.974 61.111 18.39 0.00 0.00 4.08
351 352 4.079748 CGGCGTACGGTGGTTTGC 62.080 66.667 18.39 0.00 39.42 3.68
479 481 4.683334 GTTGGTGCAAGGCGACGC 62.683 66.667 12.43 12.43 0.00 5.19
529 531 2.509561 GAAGCGACGGAGGAAGGC 60.510 66.667 0.00 0.00 0.00 4.35
654 656 1.842052 AGGAGAAGGAGAAGTCGTCC 58.158 55.000 0.00 0.00 0.00 4.79
656 658 2.172679 GGAAGGAGAAGGAGAAGTCGT 58.827 52.381 0.00 0.00 0.00 4.34
727 732 2.815308 GTCGCGGATGTCCTGGAT 59.185 61.111 6.13 0.00 0.00 3.41
772 777 1.807573 CTGAGCCCTTCTCGCGTTC 60.808 63.158 5.77 0.00 44.86 3.95
863 868 1.741770 CTCACCAACACGGCTAGGC 60.742 63.158 6.15 6.15 39.03 3.93
899 904 1.144057 CTGCGCTTCGGGGAGTAAT 59.856 57.895 9.73 0.00 0.00 1.89
936 953 2.998097 CCTTCCTTGATGGCGGGA 59.002 61.111 0.00 0.00 35.26 5.14
954 977 1.067142 TCATCTTCCGGTTCCACTTCG 60.067 52.381 0.00 0.00 0.00 3.79
1079 1102 3.136260 ACAACCCAACAAATTGCTCCAAT 59.864 39.130 0.00 0.00 35.39 3.16
1095 1118 0.322187 ATACGGGCTTCACACAACCC 60.322 55.000 0.00 0.00 39.12 4.11
1106 1129 2.290071 CGGGATTCCAAATATACGGGCT 60.290 50.000 4.80 0.00 0.00 5.19
1107 1130 2.081462 CGGGATTCCAAATATACGGGC 58.919 52.381 4.80 0.00 0.00 6.13
1115 1138 3.235200 TGGAACAAACGGGATTCCAAAT 58.765 40.909 4.80 0.00 46.93 2.32
1231 1254 2.169832 AACTTCATCCTCGTGGTGTG 57.830 50.000 2.99 4.59 34.23 3.82
1238 1261 3.499918 AGCAACAGAAAACTTCATCCTCG 59.500 43.478 0.00 0.00 0.00 4.63
1246 1269 4.122046 GGCAAATCAGCAACAGAAAACTT 58.878 39.130 0.00 0.00 35.83 2.66
1311 1334 3.150903 AAGCTTGCCTTCCCCTGCA 62.151 57.895 0.00 0.00 35.27 4.41
1325 1348 4.160439 TCGAATGAGTAATCAGTCCAAGCT 59.840 41.667 14.22 0.00 31.80 3.74
1364 1387 4.510340 CGGTGTTCTGCCTAACAATATACC 59.490 45.833 2.82 0.00 40.85 2.73
1420 1449 1.380302 GGTCACCCTCAGCCAATGT 59.620 57.895 0.00 0.00 0.00 2.71
1445 1474 6.716934 AGTACCTCTCAGTTACATGTATGG 57.283 41.667 6.36 0.00 0.00 2.74
1451 1480 4.142359 CGAGCAAGTACCTCTCAGTTACAT 60.142 45.833 7.21 0.00 0.00 2.29
1520 1549 6.545298 ACATTCAGATTTCTCATAAAGCCTCC 59.455 38.462 0.00 0.00 0.00 4.30
1556 1585 5.053811 TCTCAAGCTTAAATGTGTTGACGA 58.946 37.500 0.00 0.00 0.00 4.20
1563 1592 4.074970 ACACCCTCTCAAGCTTAAATGTG 58.925 43.478 0.00 5.15 0.00 3.21
1595 1624 1.106285 GGGCCCACATGAGACATTTC 58.894 55.000 19.95 0.00 0.00 2.17
1670 1700 2.409948 GCAGGGTGCAAGAGAACTAT 57.590 50.000 0.00 0.00 44.26 2.12
1671 1701 3.935993 GCAGGGTGCAAGAGAACTA 57.064 52.632 0.00 0.00 44.26 2.24
1733 1764 8.039603 ACGTAAATCAAACTATGAAGCATCAA 57.960 30.769 0.00 0.00 42.54 2.57
1908 1957 5.090083 CAGTAACACTAGACGCTCTCTTTC 58.910 45.833 0.00 0.00 0.00 2.62
1945 1994 9.394477 GGTACAGACAAAACATTCATTTAAGTC 57.606 33.333 0.00 0.00 31.70 3.01
1979 2028 7.499321 ACAAAATTCACATAGGTAACGACAA 57.501 32.000 0.00 0.00 46.39 3.18
2007 2056 9.149225 GATGCTGACTGTAAAATAGGATATCAG 57.851 37.037 4.83 0.00 35.29 2.90
2026 2078 0.035725 CACAGGCTCAAGGATGCTGA 60.036 55.000 0.00 0.00 0.00 4.26
2104 2157 8.186821 GCAATAGCAATTTTCTCTCTAACATGT 58.813 33.333 0.00 0.00 41.58 3.21
2107 2175 7.928307 AGCAATAGCAATTTTCTCTCTAACA 57.072 32.000 0.00 0.00 45.49 2.41
2118 2186 6.224665 TGATAAGGCAAGCAATAGCAATTT 57.775 33.333 0.00 0.00 45.49 1.82
2225 2551 7.712264 TGTGCCATTCTAATTGAAAACAAAG 57.288 32.000 0.00 0.00 38.29 2.77
2286 2612 4.973168 ACAGTGCTGAAACCTGAAAGATA 58.027 39.130 6.17 0.00 34.07 1.98
2287 2613 3.825328 ACAGTGCTGAAACCTGAAAGAT 58.175 40.909 6.17 0.00 34.07 2.40
2363 2689 8.796475 TCTGTTTCTTCAAATATGGAAGGAAAG 58.204 33.333 10.99 10.68 40.56 2.62
2410 2777 2.620585 GCACACCTTCTGAAGCTTTTCT 59.379 45.455 11.93 0.00 0.00 2.52
2430 2797 3.282021 TCTTCAGGATGCAATTACCAGC 58.718 45.455 0.00 0.00 34.76 4.85
2527 3429 6.840780 ATAGGCAAAGCTCATACAAAAGTT 57.159 33.333 0.00 0.00 0.00 2.66
2588 3490 6.742109 ACAAGATGACAGAAAGGAACAAATG 58.258 36.000 0.00 0.00 0.00 2.32
2589 3491 6.966534 ACAAGATGACAGAAAGGAACAAAT 57.033 33.333 0.00 0.00 0.00 2.32
2601 3503 7.920151 TGTTTCCAAACATAAACAAGATGACAG 59.080 33.333 0.55 0.00 43.45 3.51
2623 3525 8.682936 ATCAGATAGAGTTCAACAAGTTGTTT 57.317 30.769 18.59 4.40 38.77 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.