Multiple sequence alignment - TraesCS7B01G396100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G396100 chr7B 100.000 3603 0 0 1 3603 662985664 662982062 0.000000e+00 6654.0
1 TraesCS7B01G396100 chr7B 90.909 154 14 0 1113 1266 662676249 662676096 1.310000e-49 207.0
2 TraesCS7B01G396100 chr7B 97.561 41 1 0 1499 1539 662984126 662984086 1.790000e-08 71.3
3 TraesCS7B01G396100 chr7B 97.561 41 1 0 1539 1579 662984166 662984126 1.790000e-08 71.3
4 TraesCS7B01G396100 chr7D 88.689 1167 63 27 2140 3257 588697949 588699095 0.000000e+00 1360.0
5 TraesCS7B01G396100 chr7D 88.824 859 71 15 1 843 588695725 588696574 0.000000e+00 1031.0
6 TraesCS7B01G396100 chr7D 92.407 698 32 13 846 1539 588696677 588697357 0.000000e+00 976.0
7 TraesCS7B01G396100 chr7D 94.281 612 25 3 1539 2147 588697321 588697925 0.000000e+00 928.0
8 TraesCS7B01G396100 chr7D 88.333 180 17 3 1087 1266 588555912 588555737 2.820000e-51 213.0
9 TraesCS7B01G396100 chr7A 90.158 884 46 16 2155 3005 680397493 680396618 0.000000e+00 1112.0
10 TraesCS7B01G396100 chr7A 88.928 858 67 13 1 842 680399682 680398837 0.000000e+00 1033.0
11 TraesCS7B01G396100 chr7A 94.788 614 25 4 1539 2152 680398136 680397530 0.000000e+00 950.0
12 TraesCS7B01G396100 chr7A 89.957 697 25 21 849 1539 680398757 680398100 0.000000e+00 857.0
13 TraesCS7B01G396100 chr7A 87.451 255 21 4 3013 3257 680396330 680396077 2.120000e-72 283.0
14 TraesCS7B01G396100 chr7A 91.667 156 13 0 1111 1266 680343200 680343045 2.180000e-52 217.0
15 TraesCS7B01G396100 chr5D 94.406 286 16 0 3318 3603 327550408 327550693 1.190000e-119 440.0
16 TraesCS7B01G396100 chr5D 93.706 286 17 1 3318 3603 61531005 61531289 9.240000e-116 427.0
17 TraesCS7B01G396100 chr5D 93.357 286 19 0 3318 3603 458649019 458648734 1.200000e-114 424.0
18 TraesCS7B01G396100 chr5D 93.357 286 19 0 3318 3603 495110497 495110782 1.200000e-114 424.0
19 TraesCS7B01G396100 chr4A 93.380 287 17 2 3318 3603 166541877 166541592 1.200000e-114 424.0
20 TraesCS7B01G396100 chr3D 93.357 286 19 0 3318 3603 386255082 386254797 1.200000e-114 424.0
21 TraesCS7B01G396100 chr2D 93.380 287 18 1 3318 3603 200265602 200265316 1.200000e-114 424.0
22 TraesCS7B01G396100 chr2D 93.380 287 18 1 3318 3603 282804425 282804139 1.200000e-114 424.0
23 TraesCS7B01G396100 chr1D 93.357 286 19 0 3318 3603 115493404 115493119 1.200000e-114 424.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G396100 chr7B 662982062 662985664 3602 True 2265.533333 6654 98.37400 1 3603 3 chr7B.!!$R2 3602
1 TraesCS7B01G396100 chr7D 588695725 588699095 3370 False 1073.750000 1360 91.05025 1 3257 4 chr7D.!!$F1 3256
2 TraesCS7B01G396100 chr7A 680396077 680399682 3605 True 847.000000 1112 90.25640 1 3257 5 chr7A.!!$R2 3256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 438 0.036952 GCTAACAGCCTCTGTGCTCA 60.037 55.0 0.0 0.0 44.62 4.26 F
1544 1673 0.111253 CCTGAACCTGGGCACTTTCT 59.889 55.0 0.0 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 2017 0.032403 CATGGGCTGTTGTGTGTTGG 59.968 55.0 0.0 0.0 0.00 3.77 R
3528 4027 0.455815 CCTCACGTGATGATCGGACA 59.544 55.0 20.4 0.0 36.48 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.100682 GAGTCGCGTGAAGGATAGCA 59.899 55.000 5.77 0.00 0.00 3.49
38 39 0.466189 ATAGCACATTGGCGGGAAGG 60.466 55.000 0.00 0.00 39.27 3.46
42 43 4.060667 CATTGGCGGGAAGGGGGT 62.061 66.667 0.00 0.00 0.00 4.95
43 44 4.060667 ATTGGCGGGAAGGGGGTG 62.061 66.667 0.00 0.00 0.00 4.61
170 179 6.667007 TGACACACTTATGATAACAGCATG 57.333 37.500 0.00 0.00 46.00 4.06
179 188 8.046708 ACTTATGATAACAGCATGAAGTTACCA 58.953 33.333 11.18 9.15 39.69 3.25
206 215 2.987282 ATTCACACGTGCAGCACCGA 62.987 55.000 20.16 8.56 0.00 4.69
235 244 6.428385 AGCAGCATTAAGTTACTGATGTTC 57.572 37.500 16.75 4.78 31.67 3.18
240 249 8.246180 CAGCATTAAGTTACTGATGTTCCATTT 58.754 33.333 9.61 0.00 31.67 2.32
241 250 8.246180 AGCATTAAGTTACTGATGTTCCATTTG 58.754 33.333 4.52 0.00 0.00 2.32
342 352 6.091718 TGCTTACTTGCATATATACGGTGA 57.908 37.500 0.00 0.00 38.12 4.02
343 353 5.924254 TGCTTACTTGCATATATACGGTGAC 59.076 40.000 0.00 0.00 38.12 3.67
396 406 9.166173 TGTAGTTGGAATCATTAAGAACTGATG 57.834 33.333 0.00 0.00 32.56 3.07
399 409 7.121759 AGTTGGAATCATTAAGAACTGATGGTG 59.878 37.037 0.00 0.00 32.56 4.17
428 438 0.036952 GCTAACAGCCTCTGTGCTCA 60.037 55.000 0.00 0.00 44.62 4.26
581 591 3.190535 GTGTTCAAACGGGCATGATAGTT 59.809 43.478 0.00 0.00 0.00 2.24
588 598 3.833732 ACGGGCATGATAGTTAGAGAGA 58.166 45.455 0.00 0.00 0.00 3.10
618 628 2.606308 GGCTGCATAAATGGCATCTTCG 60.606 50.000 0.00 0.00 41.06 3.79
651 669 5.366186 TGCAATAACTTGGGGCATAAATCAT 59.634 36.000 0.00 0.00 32.72 2.45
653 671 6.462768 GCAATAACTTGGGGCATAAATCATCA 60.463 38.462 0.00 0.00 32.72 3.07
692 710 7.944000 AGTCATATATCATGTGGTGGCATTAAA 59.056 33.333 0.00 0.00 0.00 1.52
735 753 7.742151 TGTTCGTAATCTGAATGTTTGAGATG 58.258 34.615 0.00 0.00 0.00 2.90
781 799 9.290988 ACATCCACACAACAATAATTGTAGTAA 57.709 29.630 0.00 0.00 44.59 2.24
803 821 3.127425 ACAGTTCAAGTAAGGTGCTCC 57.873 47.619 0.00 0.00 0.00 4.70
843 861 2.095919 GCCGTTACGAAAGCAGAACATT 60.096 45.455 6.24 0.00 0.00 2.71
844 862 3.608474 GCCGTTACGAAAGCAGAACATTT 60.608 43.478 6.24 0.00 0.00 2.32
847 965 6.311723 CCGTTACGAAAGCAGAACATTTTAT 58.688 36.000 6.24 0.00 0.00 1.40
894 1012 6.463995 ACATGCTTTTTCTTGTAGGTTCAA 57.536 33.333 0.00 0.00 0.00 2.69
971 1091 4.523943 ACATCCAAAAATAAGTCAGCAGCA 59.476 37.500 0.00 0.00 0.00 4.41
1140 1267 1.003718 CGAGAACCTCCCACCAACC 60.004 63.158 0.00 0.00 0.00 3.77
1173 1300 6.393171 GCAATTGGCTAAAGAACTGAAGAAT 58.607 36.000 7.72 0.00 40.25 2.40
1179 1306 6.428159 TGGCTAAAGAACTGAAGAATCTTGAC 59.572 38.462 0.00 0.00 33.86 3.18
1278 1405 5.545723 CCCTGGTAAGATTCTGTCAGGATAT 59.454 44.000 21.85 0.00 43.05 1.63
1301 1428 1.821216 ACATTGCTTTACACCTCCCG 58.179 50.000 0.00 0.00 0.00 5.14
1318 1445 0.317269 CCGTCTTGTGTGCTTTGCAG 60.317 55.000 0.00 0.00 40.08 4.41
1363 1491 2.020694 GCTACTTGCATGATGGTGCCT 61.021 52.381 6.60 0.00 44.43 4.75
1366 1494 2.806434 ACTTGCATGATGGTGCCTTTA 58.194 42.857 6.60 0.00 44.43 1.85
1384 1512 7.554476 GTGCCTTTATCTATTCTTGTCTTTCCT 59.446 37.037 0.00 0.00 0.00 3.36
1392 1520 8.924511 TCTATTCTTGTCTTTCCTTCACATTT 57.075 30.769 0.00 0.00 0.00 2.32
1423 1551 7.062957 TCATCACTAGTCAAGTATCTGATGGA 58.937 38.462 11.88 0.00 36.36 3.41
1424 1552 6.951062 TCACTAGTCAAGTATCTGATGGAG 57.049 41.667 0.00 0.00 35.76 3.86
1425 1553 5.300539 TCACTAGTCAAGTATCTGATGGAGC 59.699 44.000 0.00 0.00 35.76 4.70
1426 1554 5.301551 CACTAGTCAAGTATCTGATGGAGCT 59.698 44.000 0.00 0.00 35.76 4.09
1427 1555 5.896678 ACTAGTCAAGTATCTGATGGAGCTT 59.103 40.000 0.00 0.00 36.36 3.74
1428 1556 5.021033 AGTCAAGTATCTGATGGAGCTTG 57.979 43.478 0.00 9.34 39.73 4.01
1429 1557 3.559242 GTCAAGTATCTGATGGAGCTTGC 59.441 47.826 15.00 10.07 39.00 4.01
1430 1558 3.453717 TCAAGTATCTGATGGAGCTTGCT 59.546 43.478 15.00 0.00 39.00 3.91
1431 1559 3.472283 AGTATCTGATGGAGCTTGCTG 57.528 47.619 0.00 0.00 0.00 4.41
1434 1562 1.203441 TCTGATGGAGCTTGCTGGGT 61.203 55.000 0.00 0.00 0.00 4.51
1448 1577 1.269723 GCTGGGTTTCTGGCTTTGTAC 59.730 52.381 0.00 0.00 0.00 2.90
1463 1592 8.810652 TGGCTTTGTACATTAAAAAGAACATC 57.189 30.769 8.16 0.00 33.63 3.06
1469 1598 9.959749 TTGTACATTAAAAAGAACATCAAGTCC 57.040 29.630 0.00 0.00 0.00 3.85
1535 1664 8.801882 TGTATTCTTATTAAACCTGAACCTGG 57.198 34.615 0.00 0.00 0.00 4.45
1536 1665 7.832187 TGTATTCTTATTAAACCTGAACCTGGG 59.168 37.037 0.00 0.00 0.00 4.45
1537 1666 4.595986 TCTTATTAAACCTGAACCTGGGC 58.404 43.478 0.00 0.00 0.00 5.36
1538 1667 2.990740 ATTAAACCTGAACCTGGGCA 57.009 45.000 0.00 0.00 0.00 5.36
1539 1668 1.989706 TTAAACCTGAACCTGGGCAC 58.010 50.000 0.00 0.00 0.00 5.01
1540 1669 1.145571 TAAACCTGAACCTGGGCACT 58.854 50.000 0.00 0.00 0.00 4.40
1541 1670 0.261696 AAACCTGAACCTGGGCACTT 59.738 50.000 0.00 0.00 0.00 3.16
1542 1671 0.261696 AACCTGAACCTGGGCACTTT 59.738 50.000 0.00 0.00 0.00 2.66
1543 1672 0.178990 ACCTGAACCTGGGCACTTTC 60.179 55.000 0.00 0.00 0.00 2.62
1544 1673 0.111253 CCTGAACCTGGGCACTTTCT 59.889 55.000 0.00 0.00 0.00 2.52
1545 1674 1.242076 CTGAACCTGGGCACTTTCTG 58.758 55.000 0.00 0.00 0.00 3.02
1546 1675 0.843309 TGAACCTGGGCACTTTCTGA 59.157 50.000 0.00 0.00 0.00 3.27
1547 1676 1.425066 TGAACCTGGGCACTTTCTGAT 59.575 47.619 0.00 0.00 0.00 2.90
1548 1677 1.815003 GAACCTGGGCACTTTCTGATG 59.185 52.381 0.00 0.00 0.00 3.07
1549 1678 0.773644 ACCTGGGCACTTTCTGATGT 59.226 50.000 0.00 0.00 0.00 3.06
1550 1679 1.145738 ACCTGGGCACTTTCTGATGTT 59.854 47.619 0.00 0.00 0.00 2.71
1551 1680 1.542915 CCTGGGCACTTTCTGATGTTG 59.457 52.381 0.00 0.00 0.00 3.33
1552 1681 2.233271 CTGGGCACTTTCTGATGTTGT 58.767 47.619 0.00 0.00 0.00 3.32
1553 1682 3.411446 CTGGGCACTTTCTGATGTTGTA 58.589 45.455 0.00 0.00 0.00 2.41
1554 1683 4.012374 CTGGGCACTTTCTGATGTTGTAT 58.988 43.478 0.00 0.00 0.00 2.29
1555 1684 4.406456 TGGGCACTTTCTGATGTTGTATT 58.594 39.130 0.00 0.00 0.00 1.89
1556 1685 4.458989 TGGGCACTTTCTGATGTTGTATTC 59.541 41.667 0.00 0.00 0.00 1.75
1557 1686 4.702131 GGGCACTTTCTGATGTTGTATTCT 59.298 41.667 0.00 0.00 0.00 2.40
1558 1687 5.183904 GGGCACTTTCTGATGTTGTATTCTT 59.816 40.000 0.00 0.00 0.00 2.52
1559 1688 6.374333 GGGCACTTTCTGATGTTGTATTCTTA 59.626 38.462 0.00 0.00 0.00 2.10
1560 1689 7.067494 GGGCACTTTCTGATGTTGTATTCTTAT 59.933 37.037 0.00 0.00 0.00 1.73
1561 1690 8.462016 GGCACTTTCTGATGTTGTATTCTTATT 58.538 33.333 0.00 0.00 0.00 1.40
1692 1821 4.687901 TCTTGTCAGACTTCCATTGTCA 57.312 40.909 1.31 0.00 36.94 3.58
1700 1829 5.189539 TCAGACTTCCATTGTCATCCATACA 59.810 40.000 0.00 0.00 36.94 2.29
1725 1854 7.534723 TTAGTTTAGTTCCTGAAGTAGAGCA 57.465 36.000 0.00 0.00 0.00 4.26
1781 1913 8.547894 GCAGGATTTTTCACGACTAAAATTTTT 58.452 29.630 9.06 0.00 34.91 1.94
1802 1934 4.439305 TCATCCAAACATTGCAACTAGC 57.561 40.909 0.00 0.00 45.96 3.42
1898 2030 3.731867 GCTTCAAGTCCAACACACAACAG 60.732 47.826 0.00 0.00 0.00 3.16
1980 2112 1.576421 GGAGTTTGAACTGCCTGCG 59.424 57.895 0.30 0.00 40.96 5.18
2002 2134 4.201990 CGTAGGATGTGGTGGACTTACTAC 60.202 50.000 0.00 0.00 40.51 2.73
2064 2196 2.305009 CCATTTCCTGAATCTGCCCTC 58.695 52.381 0.00 0.00 0.00 4.30
2070 2202 2.172082 TCCTGAATCTGCCCTCAATGAG 59.828 50.000 2.68 2.68 0.00 2.90
2100 2232 3.187432 GGAAGTTGCTGCTTGAGAACTAC 59.813 47.826 0.00 0.00 0.00 2.73
2152 2284 9.734620 CAGTAATCTTCAACTTCATTTTGTCAA 57.265 29.630 0.00 0.00 0.00 3.18
2162 2328 8.755018 CAACTTCATTTTGTCAACTTATTGGTC 58.245 33.333 0.00 0.00 36.39 4.02
2222 2389 1.486310 CCTAGAATGCCACTGCTACCA 59.514 52.381 0.00 0.00 38.71 3.25
2271 2442 1.796796 GAAACATCTGGTGCGGCTC 59.203 57.895 0.00 0.00 0.00 4.70
2288 2459 4.069304 CGGCTCTAGCTAGTTACTGATCT 58.931 47.826 20.10 0.00 41.70 2.75
2289 2460 4.517453 CGGCTCTAGCTAGTTACTGATCTT 59.483 45.833 20.10 0.00 41.70 2.40
2476 2647 1.502231 CGAATTCGCAGGATCGGAAT 58.498 50.000 15.93 0.00 0.00 3.01
2609 2787 8.660373 AGAGTTTGAAGAGATTATAAGCAAACG 58.340 33.333 3.17 0.00 44.75 3.60
2634 2812 7.472334 AAACTGTCAATGCTCCTCATATTTT 57.528 32.000 0.00 0.00 34.33 1.82
2692 2870 5.932303 CCAGAAATAACGAGAAGAAACTGGA 59.068 40.000 0.00 0.00 42.22 3.86
2727 2911 2.909006 AGGATTGCCTCTCTTCTGTTCA 59.091 45.455 0.00 0.00 42.19 3.18
2757 2965 5.625150 ACTGTGGAGGGAGAATAATAATGC 58.375 41.667 0.00 0.00 0.00 3.56
2802 3010 5.655090 TCCTGTATACTTTACTAGTGCTGCA 59.345 40.000 5.39 0.00 37.73 4.41
2824 3032 0.969149 TCCTGCGTCTGTTCTGTGAT 59.031 50.000 0.00 0.00 0.00 3.06
2827 3035 3.006430 TCCTGCGTCTGTTCTGTGATTTA 59.994 43.478 0.00 0.00 0.00 1.40
2857 3065 4.764823 TGGATGTAAACTTGAATGGTGGAC 59.235 41.667 0.00 0.00 0.00 4.02
2878 3087 5.405935 ACAACATTTTCTTCCCAATAGGC 57.594 39.130 0.00 0.00 34.51 3.93
2994 3203 6.376864 TCAAACTCAAGTGATTTGAACCTGAA 59.623 34.615 12.47 0.00 44.84 3.02
2999 3208 7.111247 TCAAGTGATTTGAACCTGAATTTGT 57.889 32.000 0.00 0.00 42.69 2.83
3024 3513 2.183478 ATCTGGCGTGATGTTGAACA 57.817 45.000 0.00 0.00 0.00 3.18
3053 3542 4.965762 CGTTAACGAGTCGTATTATGAGCA 59.034 41.667 23.35 0.00 39.99 4.26
3102 3598 2.158813 AGATGGTGAAACACTGGAACGT 60.159 45.455 0.00 0.00 39.98 3.99
3104 3600 1.740585 TGGTGAAACACTGGAACGTTG 59.259 47.619 5.00 0.00 39.98 4.10
3105 3601 1.064952 GGTGAAACACTGGAACGTTGG 59.935 52.381 5.00 0.00 39.98 3.77
3136 3632 5.316327 GCTGCTAAGCTAAAAGTGGAATT 57.684 39.130 0.00 0.00 46.60 2.17
3151 3647 3.317993 GTGGAATTATGTAGGCGGCATTT 59.682 43.478 13.08 0.00 0.00 2.32
3152 3648 3.317711 TGGAATTATGTAGGCGGCATTTG 59.682 43.478 13.08 0.00 0.00 2.32
3153 3649 3.308530 GAATTATGTAGGCGGCATTTGC 58.691 45.455 13.08 0.00 41.14 3.68
3167 3663 5.104374 CGGCATTTGCAATCTGATAAAGTT 58.896 37.500 12.36 0.00 44.36 2.66
3206 3705 5.073554 TGATGATGGAGTATATTGCTGGGTT 59.926 40.000 0.00 0.00 0.00 4.11
3223 3722 1.621107 GTTTGCATTGCTCATGGTCG 58.379 50.000 10.49 0.00 32.81 4.79
3225 3724 1.242665 TTGCATTGCTCATGGTCGCA 61.243 50.000 10.49 0.00 32.81 5.10
3257 3756 1.998315 CAAACTGAGATCGTCCTGCAG 59.002 52.381 6.78 6.78 0.00 4.41
3258 3757 1.261480 AACTGAGATCGTCCTGCAGT 58.739 50.000 13.81 0.00 41.19 4.40
3259 3758 1.261480 ACTGAGATCGTCCTGCAGTT 58.739 50.000 13.81 0.00 36.49 3.16
3260 3759 1.203523 ACTGAGATCGTCCTGCAGTTC 59.796 52.381 13.81 4.14 36.49 3.01
3261 3760 1.203287 CTGAGATCGTCCTGCAGTTCA 59.797 52.381 13.81 4.04 0.00 3.18
3262 3761 1.067565 TGAGATCGTCCTGCAGTTCAC 60.068 52.381 13.81 5.32 0.00 3.18
3263 3762 0.969149 AGATCGTCCTGCAGTTCACA 59.031 50.000 13.81 0.00 0.00 3.58
3264 3763 1.071605 GATCGTCCTGCAGTTCACAC 58.928 55.000 13.81 0.20 0.00 3.82
3265 3764 0.320771 ATCGTCCTGCAGTTCACACC 60.321 55.000 13.81 0.00 0.00 4.16
3266 3765 1.227527 CGTCCTGCAGTTCACACCA 60.228 57.895 13.81 0.00 0.00 4.17
3267 3766 0.813610 CGTCCTGCAGTTCACACCAA 60.814 55.000 13.81 0.00 0.00 3.67
3268 3767 0.663153 GTCCTGCAGTTCACACCAAC 59.337 55.000 13.81 0.00 0.00 3.77
3269 3768 0.546122 TCCTGCAGTTCACACCAACT 59.454 50.000 13.81 0.00 37.05 3.16
3270 3769 1.765904 TCCTGCAGTTCACACCAACTA 59.234 47.619 13.81 0.00 34.70 2.24
3271 3770 2.146342 CCTGCAGTTCACACCAACTAG 58.854 52.381 13.81 0.00 34.70 2.57
3272 3771 2.224281 CCTGCAGTTCACACCAACTAGA 60.224 50.000 13.81 0.00 34.70 2.43
3273 3772 2.802816 CTGCAGTTCACACCAACTAGAC 59.197 50.000 5.25 0.00 34.70 2.59
3274 3773 1.792949 GCAGTTCACACCAACTAGACG 59.207 52.381 0.00 0.00 34.70 4.18
3275 3774 2.404215 CAGTTCACACCAACTAGACGG 58.596 52.381 0.00 0.00 34.70 4.79
3276 3775 2.037144 AGTTCACACCAACTAGACGGT 58.963 47.619 0.00 0.00 34.70 4.83
3277 3776 2.035576 AGTTCACACCAACTAGACGGTC 59.964 50.000 0.00 0.00 34.70 4.79
3278 3777 1.991121 TCACACCAACTAGACGGTCT 58.009 50.000 15.95 15.95 31.41 3.85
3279 3778 2.313317 TCACACCAACTAGACGGTCTT 58.687 47.619 16.95 0.00 31.41 3.01
3280 3779 2.035449 TCACACCAACTAGACGGTCTTG 59.965 50.000 16.95 16.58 31.41 3.02
3281 3780 2.037144 ACACCAACTAGACGGTCTTGT 58.963 47.619 16.95 17.28 34.05 3.16
3282 3781 2.433239 ACACCAACTAGACGGTCTTGTT 59.567 45.455 25.32 25.32 41.73 2.83
3286 3785 2.814280 ACTAGACGGTCTTGTTGGTG 57.186 50.000 16.95 1.63 28.33 4.17
3287 3786 2.313317 ACTAGACGGTCTTGTTGGTGA 58.687 47.619 16.95 0.00 28.33 4.02
3288 3787 2.696707 ACTAGACGGTCTTGTTGGTGAA 59.303 45.455 16.95 0.00 28.33 3.18
3289 3788 2.240493 AGACGGTCTTGTTGGTGAAG 57.760 50.000 4.45 0.00 0.00 3.02
3290 3789 1.760613 AGACGGTCTTGTTGGTGAAGA 59.239 47.619 4.45 0.00 0.00 2.87
3291 3790 1.865340 GACGGTCTTGTTGGTGAAGAC 59.135 52.381 0.00 0.00 45.83 3.01
3292 3791 1.485066 ACGGTCTTGTTGGTGAAGACT 59.515 47.619 11.35 0.00 45.82 3.24
3293 3792 2.135933 CGGTCTTGTTGGTGAAGACTC 58.864 52.381 11.35 3.05 45.82 3.36
3294 3793 2.135933 GGTCTTGTTGGTGAAGACTCG 58.864 52.381 11.35 0.00 45.82 4.18
3295 3794 2.223971 GGTCTTGTTGGTGAAGACTCGA 60.224 50.000 11.35 0.00 45.82 4.04
3296 3795 3.454375 GTCTTGTTGGTGAAGACTCGAA 58.546 45.455 0.00 0.00 44.02 3.71
3297 3796 3.869246 GTCTTGTTGGTGAAGACTCGAAA 59.131 43.478 0.00 0.00 44.02 3.46
3298 3797 4.025647 GTCTTGTTGGTGAAGACTCGAAAG 60.026 45.833 0.00 0.00 44.02 2.62
3299 3798 3.536956 TGTTGGTGAAGACTCGAAAGT 57.463 42.857 0.00 0.00 38.88 2.66
3300 3799 4.659111 TGTTGGTGAAGACTCGAAAGTA 57.341 40.909 0.00 0.00 35.28 2.24
3301 3800 4.617959 TGTTGGTGAAGACTCGAAAGTAG 58.382 43.478 0.00 0.00 35.28 2.57
3302 3801 4.340097 TGTTGGTGAAGACTCGAAAGTAGA 59.660 41.667 0.00 0.00 35.28 2.59
3303 3802 4.768130 TGGTGAAGACTCGAAAGTAGAG 57.232 45.455 0.00 0.00 41.27 2.43
3304 3803 3.506455 TGGTGAAGACTCGAAAGTAGAGG 59.494 47.826 0.00 0.00 39.90 3.69
3305 3804 3.506844 GGTGAAGACTCGAAAGTAGAGGT 59.493 47.826 0.00 0.00 39.90 3.85
3306 3805 4.022155 GGTGAAGACTCGAAAGTAGAGGTT 60.022 45.833 0.00 0.00 39.90 3.50
3307 3806 4.918583 GTGAAGACTCGAAAGTAGAGGTTG 59.081 45.833 0.00 0.00 39.90 3.77
3308 3807 4.583489 TGAAGACTCGAAAGTAGAGGTTGT 59.417 41.667 0.00 0.00 39.90 3.32
3309 3808 5.068723 TGAAGACTCGAAAGTAGAGGTTGTT 59.931 40.000 0.00 0.00 39.90 2.83
3310 3809 4.872664 AGACTCGAAAGTAGAGGTTGTTG 58.127 43.478 0.00 0.00 39.90 3.33
3311 3810 4.583489 AGACTCGAAAGTAGAGGTTGTTGA 59.417 41.667 0.00 0.00 39.90 3.18
3312 3811 5.068723 AGACTCGAAAGTAGAGGTTGTTGAA 59.931 40.000 0.00 0.00 39.90 2.69
3313 3812 5.667466 ACTCGAAAGTAGAGGTTGTTGAAA 58.333 37.500 0.00 0.00 39.90 2.69
3314 3813 6.110707 ACTCGAAAGTAGAGGTTGTTGAAAA 58.889 36.000 0.00 0.00 39.90 2.29
3315 3814 6.596497 ACTCGAAAGTAGAGGTTGTTGAAAAA 59.404 34.615 0.00 0.00 39.90 1.94
3316 3815 7.011828 TCGAAAGTAGAGGTTGTTGAAAAAG 57.988 36.000 0.00 0.00 0.00 2.27
3317 3816 6.819649 TCGAAAGTAGAGGTTGTTGAAAAAGA 59.180 34.615 0.00 0.00 0.00 2.52
3318 3817 7.497909 TCGAAAGTAGAGGTTGTTGAAAAAGAT 59.502 33.333 0.00 0.00 0.00 2.40
3319 3818 7.798982 CGAAAGTAGAGGTTGTTGAAAAAGATC 59.201 37.037 0.00 0.00 0.00 2.75
3320 3819 8.519799 AAAGTAGAGGTTGTTGAAAAAGATCA 57.480 30.769 0.00 0.00 0.00 2.92
3321 3820 8.697507 AAGTAGAGGTTGTTGAAAAAGATCAT 57.302 30.769 0.00 0.00 0.00 2.45
3322 3821 8.329203 AGTAGAGGTTGTTGAAAAAGATCATC 57.671 34.615 0.00 0.00 0.00 2.92
3323 3822 8.160106 AGTAGAGGTTGTTGAAAAAGATCATCT 58.840 33.333 0.00 0.00 0.00 2.90
3324 3823 7.830099 AGAGGTTGTTGAAAAAGATCATCTT 57.170 32.000 0.00 0.00 38.59 2.40
3326 3825 8.355913 AGAGGTTGTTGAAAAAGATCATCTTTC 58.644 33.333 13.20 2.73 45.19 2.62
3327 3826 8.010733 AGGTTGTTGAAAAAGATCATCTTTCA 57.989 30.769 13.20 5.44 45.19 2.69
3328 3827 8.477256 AGGTTGTTGAAAAAGATCATCTTTCAA 58.523 29.630 13.20 11.15 45.19 2.69
3334 3833 9.683069 TTGAAAAAGATCATCTTTCAACTTAGC 57.317 29.630 13.20 0.00 45.19 3.09
3335 3834 8.299570 TGAAAAAGATCATCTTTCAACTTAGCC 58.700 33.333 13.20 0.00 45.19 3.93
3336 3835 8.414629 AAAAAGATCATCTTTCAACTTAGCCT 57.585 30.769 13.20 0.00 45.19 4.58
3337 3836 8.414629 AAAAGATCATCTTTCAACTTAGCCTT 57.585 30.769 13.20 0.00 45.19 4.35
3338 3837 7.622893 AAGATCATCTTTCAACTTAGCCTTC 57.377 36.000 0.00 0.00 31.57 3.46
3339 3838 6.956497 AGATCATCTTTCAACTTAGCCTTCT 58.044 36.000 0.00 0.00 0.00 2.85
3340 3839 7.047271 AGATCATCTTTCAACTTAGCCTTCTC 58.953 38.462 0.00 0.00 0.00 2.87
3341 3840 6.365970 TCATCTTTCAACTTAGCCTTCTCT 57.634 37.500 0.00 0.00 0.00 3.10
3342 3841 7.482169 TCATCTTTCAACTTAGCCTTCTCTA 57.518 36.000 0.00 0.00 0.00 2.43
3343 3842 7.551585 TCATCTTTCAACTTAGCCTTCTCTAG 58.448 38.462 0.00 0.00 0.00 2.43
3344 3843 7.397476 TCATCTTTCAACTTAGCCTTCTCTAGA 59.603 37.037 0.00 0.00 0.00 2.43
3345 3844 7.540474 TCTTTCAACTTAGCCTTCTCTAGAA 57.460 36.000 0.00 0.00 0.00 2.10
3346 3845 7.963532 TCTTTCAACTTAGCCTTCTCTAGAAA 58.036 34.615 0.00 0.00 33.07 2.52
3347 3846 7.873505 TCTTTCAACTTAGCCTTCTCTAGAAAC 59.126 37.037 0.00 0.00 33.07 2.78
3348 3847 6.665992 TCAACTTAGCCTTCTCTAGAAACA 57.334 37.500 0.00 0.00 33.07 2.83
3349 3848 6.456501 TCAACTTAGCCTTCTCTAGAAACAC 58.543 40.000 0.00 0.00 33.07 3.32
3350 3849 6.041637 TCAACTTAGCCTTCTCTAGAAACACA 59.958 38.462 0.00 0.00 33.07 3.72
3351 3850 6.613153 ACTTAGCCTTCTCTAGAAACACAT 57.387 37.500 0.00 0.00 33.07 3.21
3352 3851 7.010339 ACTTAGCCTTCTCTAGAAACACATT 57.990 36.000 0.00 0.00 33.07 2.71
3353 3852 8.135382 ACTTAGCCTTCTCTAGAAACACATTA 57.865 34.615 0.00 0.00 33.07 1.90
3354 3853 8.594550 ACTTAGCCTTCTCTAGAAACACATTAA 58.405 33.333 0.00 0.00 33.07 1.40
3355 3854 9.436957 CTTAGCCTTCTCTAGAAACACATTAAA 57.563 33.333 0.00 0.00 33.07 1.52
3356 3855 9.787435 TTAGCCTTCTCTAGAAACACATTAAAA 57.213 29.630 0.00 0.00 33.07 1.52
3357 3856 8.870075 AGCCTTCTCTAGAAACACATTAAAAT 57.130 30.769 0.00 0.00 33.07 1.82
3358 3857 9.301897 AGCCTTCTCTAGAAACACATTAAAATT 57.698 29.630 0.00 0.00 33.07 1.82
3359 3858 9.561270 GCCTTCTCTAGAAACACATTAAAATTC 57.439 33.333 0.00 0.00 33.07 2.17
3368 3867 9.030301 AGAAACACATTAAAATTCAAGGAAACG 57.970 29.630 0.00 0.00 0.00 3.60
3369 3868 7.707774 AACACATTAAAATTCAAGGAAACGG 57.292 32.000 0.00 0.00 0.00 4.44
3370 3869 6.811954 ACACATTAAAATTCAAGGAAACGGT 58.188 32.000 0.00 0.00 0.00 4.83
3371 3870 7.942990 ACACATTAAAATTCAAGGAAACGGTA 58.057 30.769 0.00 0.00 0.00 4.02
3372 3871 8.414778 ACACATTAAAATTCAAGGAAACGGTAA 58.585 29.630 0.00 0.00 0.00 2.85
3373 3872 9.418045 CACATTAAAATTCAAGGAAACGGTAAT 57.582 29.630 0.00 0.00 0.00 1.89
3376 3875 9.777575 ATTAAAATTCAAGGAAACGGTAATACG 57.222 29.630 0.00 0.00 40.31 3.06
3377 3876 5.806366 AATTCAAGGAAACGGTAATACGG 57.194 39.130 0.00 0.00 38.39 4.02
3378 3877 4.533919 TTCAAGGAAACGGTAATACGGA 57.466 40.909 4.96 0.00 38.39 4.69
3379 3878 4.741321 TCAAGGAAACGGTAATACGGAT 57.259 40.909 4.96 0.00 38.39 4.18
3380 3879 4.685924 TCAAGGAAACGGTAATACGGATC 58.314 43.478 4.96 3.23 38.39 3.36
3381 3880 4.160065 TCAAGGAAACGGTAATACGGATCA 59.840 41.667 4.96 0.00 38.39 2.92
3382 3881 4.950205 AGGAAACGGTAATACGGATCAT 57.050 40.909 4.96 0.00 38.39 2.45
3383 3882 5.286267 AGGAAACGGTAATACGGATCATT 57.714 39.130 4.96 0.00 38.39 2.57
3384 3883 5.054477 AGGAAACGGTAATACGGATCATTG 58.946 41.667 4.96 0.00 38.39 2.82
3385 3884 5.051816 GGAAACGGTAATACGGATCATTGA 58.948 41.667 4.96 0.00 38.39 2.57
3386 3885 5.699458 GGAAACGGTAATACGGATCATTGAT 59.301 40.000 4.96 0.00 38.39 2.57
3387 3886 6.128634 GGAAACGGTAATACGGATCATTGATC 60.129 42.308 16.80 16.80 38.25 2.92
3388 3887 5.723672 ACGGTAATACGGATCATTGATCT 57.276 39.130 22.54 9.50 38.91 2.75
3389 3888 6.829229 ACGGTAATACGGATCATTGATCTA 57.171 37.500 22.54 11.18 38.91 1.98
3390 3889 6.618811 ACGGTAATACGGATCATTGATCTAC 58.381 40.000 22.54 16.55 38.91 2.59
3391 3890 6.208007 ACGGTAATACGGATCATTGATCTACA 59.792 38.462 22.54 10.59 38.91 2.74
3392 3891 7.088272 CGGTAATACGGATCATTGATCTACAA 58.912 38.462 22.54 9.40 42.95 2.41
3393 3892 7.061905 CGGTAATACGGATCATTGATCTACAAC 59.938 40.741 22.54 14.16 41.52 3.32
3394 3893 7.870954 GGTAATACGGATCATTGATCTACAACA 59.129 37.037 22.54 5.76 41.52 3.33
3395 3894 9.424319 GTAATACGGATCATTGATCTACAACAT 57.576 33.333 22.54 8.95 41.52 2.71
3397 3896 9.645059 AATACGGATCATTGATCTACAACATAG 57.355 33.333 22.54 8.48 41.52 2.23
3398 3897 7.290110 ACGGATCATTGATCTACAACATAGA 57.710 36.000 22.54 0.00 41.52 1.98
3399 3898 7.901029 ACGGATCATTGATCTACAACATAGAT 58.099 34.615 22.54 0.00 41.52 1.98
3400 3899 9.025041 ACGGATCATTGATCTACAACATAGATA 57.975 33.333 22.54 0.00 41.52 1.98
3481 3980 9.268282 ACTTAAGAACTCCCATTTAGATAGACA 57.732 33.333 10.09 0.00 0.00 3.41
3485 3984 7.740805 AGAACTCCCATTTAGATAGACATTCC 58.259 38.462 0.00 0.00 0.00 3.01
3486 3985 7.570607 AGAACTCCCATTTAGATAGACATTCCT 59.429 37.037 0.00 0.00 0.00 3.36
3487 3986 7.309770 ACTCCCATTTAGATAGACATTCCTC 57.690 40.000 0.00 0.00 0.00 3.71
3488 3987 6.846505 ACTCCCATTTAGATAGACATTCCTCA 59.153 38.462 0.00 0.00 0.00 3.86
3489 3988 7.348274 ACTCCCATTTAGATAGACATTCCTCAA 59.652 37.037 0.00 0.00 0.00 3.02
3490 3989 7.739825 TCCCATTTAGATAGACATTCCTCAAG 58.260 38.462 0.00 0.00 0.00 3.02
3491 3990 7.348274 TCCCATTTAGATAGACATTCCTCAAGT 59.652 37.037 0.00 0.00 0.00 3.16
3492 3991 7.659390 CCCATTTAGATAGACATTCCTCAAGTC 59.341 40.741 0.00 0.00 0.00 3.01
3493 3992 8.206867 CCATTTAGATAGACATTCCTCAAGTCA 58.793 37.037 0.00 0.00 34.80 3.41
3494 3993 9.775854 CATTTAGATAGACATTCCTCAAGTCAT 57.224 33.333 0.00 0.00 34.80 3.06
3495 3994 9.995003 ATTTAGATAGACATTCCTCAAGTCATC 57.005 33.333 0.00 0.00 34.80 2.92
3496 3995 8.774546 TTAGATAGACATTCCTCAAGTCATCT 57.225 34.615 0.00 0.00 35.88 2.90
3497 3996 9.868160 TTAGATAGACATTCCTCAAGTCATCTA 57.132 33.333 0.00 0.00 34.78 1.98
3498 3997 8.774546 AGATAGACATTCCTCAAGTCATCTAA 57.225 34.615 0.00 0.00 33.05 2.10
3499 3998 9.206690 AGATAGACATTCCTCAAGTCATCTAAA 57.793 33.333 0.00 0.00 33.05 1.85
3500 3999 9.995003 GATAGACATTCCTCAAGTCATCTAAAT 57.005 33.333 0.00 0.00 34.80 1.40
3501 4000 9.775854 ATAGACATTCCTCAAGTCATCTAAATG 57.224 33.333 0.00 0.00 34.80 2.32
3502 4001 7.855375 AGACATTCCTCAAGTCATCTAAATGA 58.145 34.615 0.00 0.00 39.63 2.57
3503 4002 8.492782 AGACATTCCTCAAGTCATCTAAATGAT 58.507 33.333 0.00 0.00 43.62 2.45
3504 4003 9.770097 GACATTCCTCAAGTCATCTAAATGATA 57.230 33.333 0.00 0.00 43.62 2.15
3508 4007 9.605275 TTCCTCAAGTCATCTAAATGATAAGTG 57.395 33.333 0.00 0.00 43.62 3.16
3509 4008 8.981659 TCCTCAAGTCATCTAAATGATAAGTGA 58.018 33.333 0.00 0.00 43.62 3.41
3510 4009 9.775854 CCTCAAGTCATCTAAATGATAAGTGAT 57.224 33.333 0.00 0.00 43.62 3.06
3512 4011 9.770097 TCAAGTCATCTAAATGATAAGTGATCC 57.230 33.333 0.00 0.00 43.62 3.36
3513 4012 9.551734 CAAGTCATCTAAATGATAAGTGATCCA 57.448 33.333 0.00 0.00 43.62 3.41
3526 4025 8.956426 TGATAAGTGATCCAAATCAACTAAACC 58.044 33.333 0.00 0.00 43.42 3.27
3527 4026 8.877864 ATAAGTGATCCAAATCAACTAAACCA 57.122 30.769 0.00 0.00 43.42 3.67
3528 4027 7.781324 AAGTGATCCAAATCAACTAAACCAT 57.219 32.000 0.00 0.00 43.42 3.55
3529 4028 7.161773 AGTGATCCAAATCAACTAAACCATG 57.838 36.000 0.00 0.00 43.42 3.66
3530 4029 6.721208 AGTGATCCAAATCAACTAAACCATGT 59.279 34.615 0.00 0.00 43.42 3.21
3531 4030 7.029563 GTGATCCAAATCAACTAAACCATGTC 58.970 38.462 0.00 0.00 43.42 3.06
3532 4031 5.975693 TCCAAATCAACTAAACCATGTCC 57.024 39.130 0.00 0.00 0.00 4.02
3533 4032 4.457603 TCCAAATCAACTAAACCATGTCCG 59.542 41.667 0.00 0.00 0.00 4.79
3534 4033 4.457603 CCAAATCAACTAAACCATGTCCGA 59.542 41.667 0.00 0.00 0.00 4.55
3535 4034 5.125417 CCAAATCAACTAAACCATGTCCGAT 59.875 40.000 0.00 0.00 0.00 4.18
3536 4035 6.258160 CAAATCAACTAAACCATGTCCGATC 58.742 40.000 0.00 0.00 0.00 3.69
3537 4036 4.545208 TCAACTAAACCATGTCCGATCA 57.455 40.909 0.00 0.00 0.00 2.92
3538 4037 5.097742 TCAACTAAACCATGTCCGATCAT 57.902 39.130 0.00 0.00 0.00 2.45
3539 4038 5.116180 TCAACTAAACCATGTCCGATCATC 58.884 41.667 0.00 0.00 0.00 2.92
3540 4039 4.753516 ACTAAACCATGTCCGATCATCA 57.246 40.909 0.00 0.00 0.00 3.07
3541 4040 4.442706 ACTAAACCATGTCCGATCATCAC 58.557 43.478 0.00 0.00 0.00 3.06
3542 4041 1.939974 AACCATGTCCGATCATCACG 58.060 50.000 0.00 0.00 0.00 4.35
3543 4042 0.824109 ACCATGTCCGATCATCACGT 59.176 50.000 0.00 0.00 0.00 4.49
3544 4043 1.211743 CCATGTCCGATCATCACGTG 58.788 55.000 9.94 9.94 0.00 4.49
3545 4044 1.202405 CCATGTCCGATCATCACGTGA 60.202 52.381 22.48 22.48 42.06 4.35
3546 4045 2.122564 CATGTCCGATCATCACGTGAG 58.877 52.381 24.41 15.36 40.92 3.51
3547 4046 0.455815 TGTCCGATCATCACGTGAGG 59.544 55.000 23.54 23.54 40.92 3.86
3548 4047 0.456221 GTCCGATCATCACGTGAGGT 59.544 55.000 27.39 16.05 40.92 3.85
3550 4049 0.528466 CCGATCATCACGTGAGGTGG 60.528 60.000 27.39 22.48 46.96 4.61
3551 4050 0.455815 CGATCATCACGTGAGGTGGA 59.544 55.000 27.39 19.23 46.96 4.02
3552 4051 1.534805 CGATCATCACGTGAGGTGGAG 60.535 57.143 27.39 14.67 46.96 3.86
3553 4052 1.478510 GATCATCACGTGAGGTGGAGT 59.521 52.381 27.39 11.30 46.96 3.85
3554 4053 2.209690 TCATCACGTGAGGTGGAGTA 57.790 50.000 27.39 6.52 46.96 2.59
3555 4054 2.092323 TCATCACGTGAGGTGGAGTAG 58.908 52.381 27.39 7.55 46.96 2.57
3556 4055 1.819288 CATCACGTGAGGTGGAGTAGT 59.181 52.381 24.41 0.00 46.96 2.73
3557 4056 1.991121 TCACGTGAGGTGGAGTAGTT 58.009 50.000 15.76 0.00 46.96 2.24
3558 4057 2.313317 TCACGTGAGGTGGAGTAGTTT 58.687 47.619 15.76 0.00 46.96 2.66
3559 4058 2.696707 TCACGTGAGGTGGAGTAGTTTT 59.303 45.455 15.76 0.00 46.96 2.43
3560 4059 3.057734 CACGTGAGGTGGAGTAGTTTTC 58.942 50.000 10.90 0.00 43.16 2.29
3561 4060 2.696707 ACGTGAGGTGGAGTAGTTTTCA 59.303 45.455 0.00 0.00 0.00 2.69
3562 4061 3.133362 ACGTGAGGTGGAGTAGTTTTCAA 59.867 43.478 0.00 0.00 0.00 2.69
3563 4062 4.202326 ACGTGAGGTGGAGTAGTTTTCAAT 60.202 41.667 0.00 0.00 0.00 2.57
3564 4063 4.152402 CGTGAGGTGGAGTAGTTTTCAATG 59.848 45.833 0.00 0.00 0.00 2.82
3565 4064 5.305585 GTGAGGTGGAGTAGTTTTCAATGA 58.694 41.667 0.00 0.00 0.00 2.57
3566 4065 5.940470 GTGAGGTGGAGTAGTTTTCAATGAT 59.060 40.000 0.00 0.00 0.00 2.45
3567 4066 5.939883 TGAGGTGGAGTAGTTTTCAATGATG 59.060 40.000 0.00 0.00 0.00 3.07
3568 4067 6.126863 AGGTGGAGTAGTTTTCAATGATGA 57.873 37.500 0.00 0.00 0.00 2.92
3569 4068 6.542821 AGGTGGAGTAGTTTTCAATGATGAA 58.457 36.000 0.00 0.00 43.70 2.57
3570 4069 6.431234 AGGTGGAGTAGTTTTCAATGATGAAC 59.569 38.462 2.91 2.91 45.01 3.18
3571 4070 6.206634 GGTGGAGTAGTTTTCAATGATGAACA 59.793 38.462 10.99 0.00 45.01 3.18
3572 4071 7.094205 GGTGGAGTAGTTTTCAATGATGAACAT 60.094 37.037 10.99 0.00 45.01 2.71
3573 4072 7.965107 GTGGAGTAGTTTTCAATGATGAACATC 59.035 37.037 7.73 7.73 45.01 3.06
3574 4073 7.884877 TGGAGTAGTTTTCAATGATGAACATCT 59.115 33.333 14.50 8.62 45.01 2.90
3575 4074 8.394121 GGAGTAGTTTTCAATGATGAACATCTC 58.606 37.037 14.50 14.02 45.01 2.75
3576 4075 9.160496 GAGTAGTTTTCAATGATGAACATCTCT 57.840 33.333 14.50 1.64 45.01 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.004610 CAATGTGCTATCCTTCACGCG 60.005 52.381 3.53 3.53 36.06 6.01
15 16 0.466189 CCCGCCAATGTGCTATCCTT 60.466 55.000 0.00 0.00 0.00 3.36
24 25 4.060667 CCCCCTTCCCGCCAATGT 62.061 66.667 0.00 0.00 0.00 2.71
55 56 2.156446 CCGTACACGTCGCCATGAC 61.156 63.158 0.00 0.00 44.53 3.06
56 57 1.659622 ATCCGTACACGTCGCCATGA 61.660 55.000 0.00 0.00 37.74 3.07
57 58 1.226859 ATCCGTACACGTCGCCATG 60.227 57.895 0.58 0.00 37.74 3.66
58 59 1.226859 CATCCGTACACGTCGCCAT 60.227 57.895 0.58 0.00 37.74 4.40
59 60 2.179767 CATCCGTACACGTCGCCA 59.820 61.111 0.58 0.00 37.74 5.69
60 61 2.581409 CCATCCGTACACGTCGCC 60.581 66.667 0.58 0.00 37.74 5.54
142 151 9.225436 TGCTGTTATCATAAGTGTGTCAATTTA 57.775 29.630 0.00 0.00 0.00 1.40
154 163 8.437360 TGGTAACTTCATGCTGTTATCATAAG 57.563 34.615 15.06 2.05 35.59 1.73
163 172 6.179756 TGATACATTGGTAACTTCATGCTGT 58.820 36.000 0.00 0.00 32.19 4.40
170 179 7.148474 ACGTGTGAATGATACATTGGTAACTTC 60.148 37.037 1.64 0.00 32.19 3.01
179 188 3.181507 GCTGCACGTGTGAATGATACATT 60.182 43.478 18.38 0.00 0.00 2.71
206 215 7.921786 TCAGTAACTTAATGCTGCTAAACAT 57.078 32.000 0.00 0.00 33.60 2.71
241 250 1.841663 AACGATGGTTCTGCACGTGC 61.842 55.000 33.11 33.11 42.50 5.34
251 260 4.700213 ACTTAATGCTGCTAAACGATGGTT 59.300 37.500 0.00 0.00 38.22 3.67
399 409 3.799755 CTGTTAGCCAACCGCGCC 61.800 66.667 0.00 0.00 44.76 6.53
506 516 1.394917 CGACCAACAAGCACTAGCATC 59.605 52.381 0.00 0.00 45.49 3.91
507 517 1.001974 TCGACCAACAAGCACTAGCAT 59.998 47.619 0.00 0.00 45.49 3.79
581 591 6.985653 ATGCAGCCTACTTTATTCTCTCTA 57.014 37.500 0.00 0.00 0.00 2.43
588 598 5.598005 TGCCATTTATGCAGCCTACTTTATT 59.402 36.000 0.00 0.00 34.05 1.40
618 628 5.116882 CCCCAAGTTATTGCAGTAGTCTAC 58.883 45.833 1.39 1.39 34.91 2.59
651 669 2.857186 TGACTAATGCCTGCAAGTGA 57.143 45.000 1.41 0.00 0.00 3.41
653 671 6.772605 TGATATATGACTAATGCCTGCAAGT 58.227 36.000 0.00 0.00 0.00 3.16
692 710 4.736793 CGAACAACCGCTATAAGTAACGAT 59.263 41.667 0.00 0.00 0.00 3.73
735 753 7.122055 TGGATGTCCATAAACTTACCAAACATC 59.878 37.037 0.00 0.00 42.01 3.06
781 799 4.532521 AGGAGCACCTTACTTGAACTGTAT 59.467 41.667 0.00 0.00 45.36 2.29
803 821 6.436843 ACGGCATATCTTGGTAAGAAAAAG 57.563 37.500 0.00 0.00 41.63 2.27
863 981 7.337942 CCTACAAGAAAAAGCATGTAGGAGATT 59.662 37.037 20.77 0.00 0.00 2.40
875 993 6.761242 ACCAAATTGAACCTACAAGAAAAAGC 59.239 34.615 0.00 0.00 33.22 3.51
894 1012 7.879160 ACTATGCAAAATTTGTGATCACCAAAT 59.121 29.630 22.85 21.64 0.00 2.32
916 1036 3.327757 TGACAACAAAGCCTCAGGACTAT 59.672 43.478 0.00 0.00 0.00 2.12
917 1037 2.703536 TGACAACAAAGCCTCAGGACTA 59.296 45.455 0.00 0.00 0.00 2.59
971 1091 1.160137 CAGCTTTAAGGTGCTCGCTT 58.840 50.000 11.28 0.00 36.88 4.68
997 1122 4.736611 ATCTCACCATGGAAGCCATAAT 57.263 40.909 21.47 1.83 43.15 1.28
1055 1182 7.930865 GGAAGACAGCATATAACTCTTTCTCAT 59.069 37.037 0.00 0.00 0.00 2.90
1058 1185 7.187824 TGGAAGACAGCATATAACTCTTTCT 57.812 36.000 0.00 0.00 0.00 2.52
1140 1267 1.667236 TAGCCAATTGCCTGATGACG 58.333 50.000 0.00 0.00 42.71 4.35
1173 1300 1.202891 TCTGGAGGTGAGTCGTCAAGA 60.203 52.381 0.00 0.00 38.29 3.02
1179 1306 0.612174 TCCCTTCTGGAGGTGAGTCG 60.612 60.000 0.32 0.00 44.71 4.18
1278 1405 5.120399 CGGGAGGTGTAAAGCAATGTATTA 58.880 41.667 0.00 0.00 0.00 0.98
1301 1428 3.691049 TTACTGCAAAGCACACAAGAC 57.309 42.857 0.00 0.00 33.79 3.01
1318 1445 8.012241 GCAGAGCATTAGCACATAACTTATTAC 58.988 37.037 0.00 0.00 45.49 1.89
1366 1494 9.525826 AAATGTGAAGGAAAGACAAGAATAGAT 57.474 29.630 0.00 0.00 0.00 1.98
1415 1543 1.203441 ACCCAGCAAGCTCCATCAGA 61.203 55.000 0.00 0.00 0.00 3.27
1416 1544 0.323178 AACCCAGCAAGCTCCATCAG 60.323 55.000 0.00 0.00 0.00 2.90
1417 1545 0.112995 AAACCCAGCAAGCTCCATCA 59.887 50.000 0.00 0.00 0.00 3.07
1419 1547 0.407139 AGAAACCCAGCAAGCTCCAT 59.593 50.000 0.00 0.00 0.00 3.41
1421 1549 1.246737 CCAGAAACCCAGCAAGCTCC 61.247 60.000 0.00 0.00 0.00 4.70
1423 1551 1.905354 GCCAGAAACCCAGCAAGCT 60.905 57.895 0.00 0.00 0.00 3.74
1424 1552 1.466851 AAGCCAGAAACCCAGCAAGC 61.467 55.000 0.00 0.00 0.00 4.01
1425 1553 1.043022 AAAGCCAGAAACCCAGCAAG 58.957 50.000 0.00 0.00 0.00 4.01
1426 1554 0.752054 CAAAGCCAGAAACCCAGCAA 59.248 50.000 0.00 0.00 0.00 3.91
1427 1555 0.396974 ACAAAGCCAGAAACCCAGCA 60.397 50.000 0.00 0.00 0.00 4.41
1428 1556 1.269723 GTACAAAGCCAGAAACCCAGC 59.730 52.381 0.00 0.00 0.00 4.85
1429 1557 2.582052 TGTACAAAGCCAGAAACCCAG 58.418 47.619 0.00 0.00 0.00 4.45
1430 1558 2.738587 TGTACAAAGCCAGAAACCCA 57.261 45.000 0.00 0.00 0.00 4.51
1431 1559 5.715434 TTAATGTACAAAGCCAGAAACCC 57.285 39.130 0.00 0.00 0.00 4.11
1434 1562 9.308318 GTTCTTTTTAATGTACAAAGCCAGAAA 57.692 29.630 0.00 0.00 0.00 2.52
1448 1577 9.329913 CGTTAGGACTTGATGTTCTTTTTAATG 57.670 33.333 0.00 0.00 35.73 1.90
1463 1592 4.261888 ACGCTGCGTTAGGACTTG 57.738 55.556 23.57 0.00 36.35 3.16
1473 1602 3.369756 TGTAATAGGAAAGAAACGCTGCG 59.630 43.478 21.91 21.91 0.00 5.18
1512 1641 6.831868 GCCCAGGTTCAGGTTTAATAAGAATA 59.168 38.462 0.00 0.00 0.00 1.75
1519 1648 2.110011 AGTGCCCAGGTTCAGGTTTAAT 59.890 45.455 0.00 0.00 0.00 1.40
1520 1649 1.497286 AGTGCCCAGGTTCAGGTTTAA 59.503 47.619 0.00 0.00 0.00 1.52
1521 1650 1.145571 AGTGCCCAGGTTCAGGTTTA 58.854 50.000 0.00 0.00 0.00 2.01
1522 1651 0.261696 AAGTGCCCAGGTTCAGGTTT 59.738 50.000 0.00 0.00 0.00 3.27
1523 1652 0.261696 AAAGTGCCCAGGTTCAGGTT 59.738 50.000 0.00 0.00 0.00 3.50
1524 1653 0.178990 GAAAGTGCCCAGGTTCAGGT 60.179 55.000 0.00 0.00 0.00 4.00
1525 1654 0.111253 AGAAAGTGCCCAGGTTCAGG 59.889 55.000 0.00 0.00 0.00 3.86
1526 1655 1.202806 TCAGAAAGTGCCCAGGTTCAG 60.203 52.381 0.00 0.00 0.00 3.02
1527 1656 0.843309 TCAGAAAGTGCCCAGGTTCA 59.157 50.000 0.00 0.00 0.00 3.18
1528 1657 1.815003 CATCAGAAAGTGCCCAGGTTC 59.185 52.381 0.00 0.00 0.00 3.62
1529 1658 1.145738 ACATCAGAAAGTGCCCAGGTT 59.854 47.619 0.00 0.00 0.00 3.50
1530 1659 0.773644 ACATCAGAAAGTGCCCAGGT 59.226 50.000 0.00 0.00 0.00 4.00
1531 1660 1.542915 CAACATCAGAAAGTGCCCAGG 59.457 52.381 0.00 0.00 0.00 4.45
1532 1661 2.233271 ACAACATCAGAAAGTGCCCAG 58.767 47.619 0.00 0.00 0.00 4.45
1533 1662 2.363306 ACAACATCAGAAAGTGCCCA 57.637 45.000 0.00 0.00 0.00 5.36
1534 1663 4.702131 AGAATACAACATCAGAAAGTGCCC 59.298 41.667 0.00 0.00 0.00 5.36
1535 1664 5.886960 AGAATACAACATCAGAAAGTGCC 57.113 39.130 0.00 0.00 0.00 5.01
1547 1676 9.802039 AGGTTCAGGTTTAATAAGAATACAACA 57.198 29.630 0.00 0.00 0.00 3.33
1549 1678 9.238368 CCAGGTTCAGGTTTAATAAGAATACAA 57.762 33.333 0.00 0.00 0.00 2.41
1550 1679 7.832187 CCCAGGTTCAGGTTTAATAAGAATACA 59.168 37.037 0.00 0.00 0.00 2.29
1551 1680 7.201794 GCCCAGGTTCAGGTTTAATAAGAATAC 60.202 40.741 0.00 0.00 0.00 1.89
1552 1681 6.831868 GCCCAGGTTCAGGTTTAATAAGAATA 59.168 38.462 0.00 0.00 0.00 1.75
1553 1682 5.656859 GCCCAGGTTCAGGTTTAATAAGAAT 59.343 40.000 0.00 0.00 0.00 2.40
1554 1683 5.014202 GCCCAGGTTCAGGTTTAATAAGAA 58.986 41.667 0.00 0.00 0.00 2.52
1555 1684 4.043561 TGCCCAGGTTCAGGTTTAATAAGA 59.956 41.667 0.00 0.00 0.00 2.10
1556 1685 4.340617 TGCCCAGGTTCAGGTTTAATAAG 58.659 43.478 0.00 0.00 0.00 1.73
1557 1686 4.390129 TGCCCAGGTTCAGGTTTAATAA 57.610 40.909 0.00 0.00 0.00 1.40
1558 1687 4.264172 ACATGCCCAGGTTCAGGTTTAATA 60.264 41.667 0.00 0.00 0.00 0.98
1559 1688 2.990740 TGCCCAGGTTCAGGTTTAAT 57.009 45.000 0.00 0.00 0.00 1.40
1560 1689 2.158385 ACATGCCCAGGTTCAGGTTTAA 60.158 45.455 0.00 0.00 0.00 1.52
1561 1690 1.427368 ACATGCCCAGGTTCAGGTTTA 59.573 47.619 0.00 0.00 0.00 2.01
1562 1691 0.188342 ACATGCCCAGGTTCAGGTTT 59.812 50.000 0.00 0.00 0.00 3.27
1672 1801 4.394300 GGATGACAATGGAAGTCTGACAAG 59.606 45.833 10.88 0.00 36.94 3.16
1692 1821 9.838339 CTTCAGGAACTAAACTAATGTATGGAT 57.162 33.333 0.00 0.00 36.02 3.41
1700 1829 8.135382 TGCTCTACTTCAGGAACTAAACTAAT 57.865 34.615 0.00 0.00 36.02 1.73
1725 1854 4.729868 AGGCCAACAGACTTTCAACTAAT 58.270 39.130 5.01 0.00 0.00 1.73
1781 1913 3.119884 CGCTAGTTGCAATGTTTGGATGA 60.120 43.478 0.59 0.00 43.06 2.92
1880 2012 1.202290 GGCTGTTGTGTGTTGGACTTG 60.202 52.381 0.00 0.00 0.00 3.16
1885 2017 0.032403 CATGGGCTGTTGTGTGTTGG 59.968 55.000 0.00 0.00 0.00 3.77
1898 2030 2.352715 GCACTACTCCAAAAACATGGGC 60.353 50.000 0.00 0.00 41.05 5.36
1907 2039 6.403866 AAACAAATCATGCACTACTCCAAA 57.596 33.333 0.00 0.00 0.00 3.28
1910 2042 5.772521 ACAAAACAAATCATGCACTACTCC 58.227 37.500 0.00 0.00 0.00 3.85
1911 2043 7.061094 GCTTACAAAACAAATCATGCACTACTC 59.939 37.037 0.00 0.00 0.00 2.59
1912 2044 6.863126 GCTTACAAAACAAATCATGCACTACT 59.137 34.615 0.00 0.00 0.00 2.57
1963 2095 1.461127 CTACGCAGGCAGTTCAAACTC 59.539 52.381 0.00 0.00 37.08 3.01
1980 2112 4.708421 TGTAGTAAGTCCACCACATCCTAC 59.292 45.833 0.00 0.00 0.00 3.18
2002 2134 2.806608 ACCTGTCAGCAAGCAATTTG 57.193 45.000 0.00 0.00 39.88 2.32
2064 2196 1.542492 ACTTCCCAGCTTGCTCATTG 58.458 50.000 0.00 0.00 0.00 2.82
2070 2202 1.288127 CAGCAACTTCCCAGCTTGC 59.712 57.895 0.00 0.00 36.26 4.01
2100 2232 2.494445 TGCCGTGCATACTCCTCG 59.506 61.111 0.00 0.00 31.71 4.63
2152 2284 6.719370 TCCTAGTGCAATTTTGACCAATAAGT 59.281 34.615 0.00 0.00 0.00 2.24
2162 2328 8.028354 TGAATACACAATCCTAGTGCAATTTTG 58.972 33.333 0.00 0.00 40.59 2.44
2222 2389 3.821033 GTCTGGTCTAACTTGCCACAAAT 59.179 43.478 0.00 0.00 0.00 2.32
2271 2442 5.521906 TGGCAAGATCAGTAACTAGCTAG 57.478 43.478 19.44 19.44 0.00 3.42
2288 2459 1.409790 GCATATGGAGCACAATGGCAA 59.590 47.619 4.56 0.00 35.83 4.52
2289 2460 1.034356 GCATATGGAGCACAATGGCA 58.966 50.000 4.56 0.00 35.83 4.92
2458 2629 1.069636 GCATTCCGATCCTGCGAATTC 60.070 52.381 0.00 0.00 0.00 2.17
2476 2647 3.557903 GACAGCAGAAGGGGCAGCA 62.558 63.158 0.00 0.00 0.00 4.41
2609 2787 6.690194 AATATGAGGAGCATTGACAGTTTC 57.310 37.500 0.00 0.00 38.44 2.78
2634 2812 3.656559 GGCGGACAACTAAGTACAGAAA 58.343 45.455 0.00 0.00 0.00 2.52
2692 2870 2.094675 CAATCCTTCCCTCGCAAACAT 58.905 47.619 0.00 0.00 0.00 2.71
2714 2898 0.979665 TGGGCCTGAACAGAAGAGAG 59.020 55.000 4.53 0.00 0.00 3.20
2727 2911 3.260100 CCCTCCACAGTTGGGCCT 61.260 66.667 4.53 0.00 44.11 5.19
2802 3010 0.753262 ACAGAACAGACGCAGGAACT 59.247 50.000 0.00 0.00 43.88 3.01
2827 3035 8.596293 ACCATTCAAGTTTACATCCAATCATTT 58.404 29.630 0.00 0.00 0.00 2.32
2841 3049 5.612725 AATGTTGTCCACCATTCAAGTTT 57.387 34.783 0.00 0.00 0.00 2.66
2857 3065 4.423732 CGCCTATTGGGAAGAAAATGTTG 58.576 43.478 0.00 0.00 37.23 3.33
2962 3171 8.853077 TCAAATCACTTGAGTTTGATGAGTAT 57.147 30.769 10.34 0.00 39.20 2.12
2963 3172 8.559536 GTTCAAATCACTTGAGTTTGATGAGTA 58.440 33.333 13.12 2.34 44.84 2.59
2964 3173 7.420800 GTTCAAATCACTTGAGTTTGATGAGT 58.579 34.615 13.12 0.00 44.84 3.41
2974 3183 7.205297 ACAAATTCAGGTTCAAATCACTTGAG 58.795 34.615 0.00 0.00 44.84 3.02
2986 3195 6.095377 CCAGATAGCAAACAAATTCAGGTTC 58.905 40.000 0.00 0.00 0.00 3.62
2994 3203 3.081061 TCACGCCAGATAGCAAACAAAT 58.919 40.909 0.00 0.00 0.00 2.32
2999 3208 2.401583 ACATCACGCCAGATAGCAAA 57.598 45.000 0.00 0.00 0.00 3.68
3066 3555 8.522830 GTTTCACCATCTCCTGAAATTTAATCA 58.477 33.333 0.00 0.00 38.37 2.57
3105 3601 3.643978 CTTAGCAGCCATCGCCGC 61.644 66.667 0.00 0.00 38.79 6.53
3136 3632 1.756430 TTGCAAATGCCGCCTACATA 58.244 45.000 0.00 0.00 41.18 2.29
3167 3663 9.659135 ACTCCATCATCATCCCATAAATTTTTA 57.341 29.630 0.00 0.00 0.00 1.52
3190 3686 5.284079 CAATGCAAACCCAGCAATATACTC 58.716 41.667 0.00 0.00 46.27 2.59
3206 3705 1.242665 TGCGACCATGAGCAATGCAA 61.243 50.000 8.35 0.00 40.78 4.08
3223 3722 2.012673 CAGTTTGCTAGTCCTCCATGC 58.987 52.381 0.00 0.00 0.00 4.06
3225 3724 3.445008 TCTCAGTTTGCTAGTCCTCCAT 58.555 45.455 0.00 0.00 0.00 3.41
3257 3756 2.035576 AGACCGTCTAGTTGGTGTGAAC 59.964 50.000 12.41 0.08 38.99 3.18
3258 3757 2.313317 AGACCGTCTAGTTGGTGTGAA 58.687 47.619 12.41 0.00 38.99 3.18
3259 3758 1.991121 AGACCGTCTAGTTGGTGTGA 58.009 50.000 12.41 0.00 38.99 3.58
3260 3759 2.223971 ACAAGACCGTCTAGTTGGTGTG 60.224 50.000 12.41 11.88 38.99 3.82
3261 3760 2.037144 ACAAGACCGTCTAGTTGGTGT 58.963 47.619 12.41 6.67 38.99 4.16
3262 3761 2.800544 CAACAAGACCGTCTAGTTGGTG 59.199 50.000 12.41 1.89 38.99 4.17
3263 3762 3.107642 CAACAAGACCGTCTAGTTGGT 57.892 47.619 0.26 8.15 42.42 3.67
3265 3764 2.800544 CACCAACAAGACCGTCTAGTTG 59.199 50.000 0.26 0.00 39.29 3.16
3266 3765 2.696707 TCACCAACAAGACCGTCTAGTT 59.303 45.455 0.26 0.00 0.00 2.24
3267 3766 2.313317 TCACCAACAAGACCGTCTAGT 58.687 47.619 0.26 0.00 0.00 2.57
3268 3767 3.005472 TCTTCACCAACAAGACCGTCTAG 59.995 47.826 0.26 0.00 0.00 2.43
3269 3768 2.960384 TCTTCACCAACAAGACCGTCTA 59.040 45.455 0.26 0.00 0.00 2.59
3270 3769 1.760613 TCTTCACCAACAAGACCGTCT 59.239 47.619 0.00 0.00 0.00 4.18
3271 3770 1.865340 GTCTTCACCAACAAGACCGTC 59.135 52.381 1.76 0.00 42.73 4.79
3272 3771 1.949465 GTCTTCACCAACAAGACCGT 58.051 50.000 1.76 0.00 42.73 4.83
3275 3774 3.093717 TCGAGTCTTCACCAACAAGAC 57.906 47.619 4.69 4.69 46.99 3.01
3276 3775 3.812156 TTCGAGTCTTCACCAACAAGA 57.188 42.857 0.00 0.00 0.00 3.02
3277 3776 3.871594 ACTTTCGAGTCTTCACCAACAAG 59.128 43.478 0.00 0.00 0.00 3.16
3278 3777 3.869065 ACTTTCGAGTCTTCACCAACAA 58.131 40.909 0.00 0.00 0.00 2.83
3279 3778 3.536956 ACTTTCGAGTCTTCACCAACA 57.463 42.857 0.00 0.00 0.00 3.33
3280 3779 4.868067 TCTACTTTCGAGTCTTCACCAAC 58.132 43.478 0.00 0.00 0.00 3.77
3281 3780 4.022242 CCTCTACTTTCGAGTCTTCACCAA 60.022 45.833 0.00 0.00 0.00 3.67
3282 3781 3.506455 CCTCTACTTTCGAGTCTTCACCA 59.494 47.826 0.00 0.00 0.00 4.17
3283 3782 3.506844 ACCTCTACTTTCGAGTCTTCACC 59.493 47.826 0.00 0.00 0.00 4.02
3284 3783 4.769859 ACCTCTACTTTCGAGTCTTCAC 57.230 45.455 0.00 0.00 0.00 3.18
3285 3784 4.583489 ACAACCTCTACTTTCGAGTCTTCA 59.417 41.667 0.00 0.00 0.00 3.02
3286 3785 5.123805 ACAACCTCTACTTTCGAGTCTTC 57.876 43.478 0.00 0.00 0.00 2.87
3287 3786 5.068723 TCAACAACCTCTACTTTCGAGTCTT 59.931 40.000 0.00 0.00 0.00 3.01
3288 3787 4.583489 TCAACAACCTCTACTTTCGAGTCT 59.417 41.667 0.00 0.00 0.00 3.24
3289 3788 4.868067 TCAACAACCTCTACTTTCGAGTC 58.132 43.478 0.00 0.00 0.00 3.36
3290 3789 4.931661 TCAACAACCTCTACTTTCGAGT 57.068 40.909 0.00 0.00 0.00 4.18
3291 3790 6.598753 TTTTCAACAACCTCTACTTTCGAG 57.401 37.500 0.00 0.00 0.00 4.04
3292 3791 6.819649 TCTTTTTCAACAACCTCTACTTTCGA 59.180 34.615 0.00 0.00 0.00 3.71
3293 3792 7.011828 TCTTTTTCAACAACCTCTACTTTCG 57.988 36.000 0.00 0.00 0.00 3.46
3294 3793 8.621286 TGATCTTTTTCAACAACCTCTACTTTC 58.379 33.333 0.00 0.00 0.00 2.62
3295 3794 8.519799 TGATCTTTTTCAACAACCTCTACTTT 57.480 30.769 0.00 0.00 0.00 2.66
3296 3795 8.697507 ATGATCTTTTTCAACAACCTCTACTT 57.302 30.769 0.00 0.00 0.00 2.24
3297 3796 8.160106 AGATGATCTTTTTCAACAACCTCTACT 58.840 33.333 0.00 0.00 0.00 2.57
3298 3797 8.329203 AGATGATCTTTTTCAACAACCTCTAC 57.671 34.615 0.00 0.00 0.00 2.59
3299 3798 8.924511 AAGATGATCTTTTTCAACAACCTCTA 57.075 30.769 0.97 0.00 31.57 2.43
3300 3799 7.830099 AAGATGATCTTTTTCAACAACCTCT 57.170 32.000 0.97 0.00 31.57 3.69
3301 3800 8.137437 TGAAAGATGATCTTTTTCAACAACCTC 58.863 33.333 20.27 5.24 45.85 3.85
3302 3801 8.010733 TGAAAGATGATCTTTTTCAACAACCT 57.989 30.769 20.27 0.00 45.85 3.50
3303 3802 8.647143 TTGAAAGATGATCTTTTTCAACAACC 57.353 30.769 20.27 6.26 45.85 3.77
3308 3807 9.683069 GCTAAGTTGAAAGATGATCTTTTTCAA 57.317 29.630 20.27 17.31 45.85 2.69
3309 3808 8.299570 GGCTAAGTTGAAAGATGATCTTTTTCA 58.700 33.333 20.27 12.70 45.85 2.69
3310 3809 8.518702 AGGCTAAGTTGAAAGATGATCTTTTTC 58.481 33.333 20.27 10.35 45.85 2.29
3311 3810 8.414629 AGGCTAAGTTGAAAGATGATCTTTTT 57.585 30.769 20.27 13.22 45.85 1.94
3312 3811 8.414629 AAGGCTAAGTTGAAAGATGATCTTTT 57.585 30.769 20.27 7.89 45.85 2.27
3314 3813 7.401246 AGAAGGCTAAGTTGAAAGATGATCTT 58.599 34.615 0.97 0.97 38.59 2.40
3315 3814 6.956497 AGAAGGCTAAGTTGAAAGATGATCT 58.044 36.000 0.00 0.00 0.00 2.75
3316 3815 7.047271 AGAGAAGGCTAAGTTGAAAGATGATC 58.953 38.462 0.00 0.00 0.00 2.92
3317 3816 6.956497 AGAGAAGGCTAAGTTGAAAGATGAT 58.044 36.000 0.00 0.00 0.00 2.45
3318 3817 6.365970 AGAGAAGGCTAAGTTGAAAGATGA 57.634 37.500 0.00 0.00 0.00 2.92
3319 3818 7.551585 TCTAGAGAAGGCTAAGTTGAAAGATG 58.448 38.462 0.00 0.00 0.00 2.90
3320 3819 7.726033 TCTAGAGAAGGCTAAGTTGAAAGAT 57.274 36.000 0.00 0.00 0.00 2.40
3321 3820 7.540474 TTCTAGAGAAGGCTAAGTTGAAAGA 57.460 36.000 0.00 0.00 0.00 2.52
3322 3821 7.657761 TGTTTCTAGAGAAGGCTAAGTTGAAAG 59.342 37.037 0.00 0.00 35.21 2.62
3323 3822 7.441458 GTGTTTCTAGAGAAGGCTAAGTTGAAA 59.559 37.037 0.00 0.00 35.21 2.69
3324 3823 6.929606 GTGTTTCTAGAGAAGGCTAAGTTGAA 59.070 38.462 0.00 0.00 35.21 2.69
3325 3824 6.041637 TGTGTTTCTAGAGAAGGCTAAGTTGA 59.958 38.462 0.00 0.00 35.21 3.18
3326 3825 6.223852 TGTGTTTCTAGAGAAGGCTAAGTTG 58.776 40.000 0.00 0.00 35.21 3.16
3327 3826 6.420913 TGTGTTTCTAGAGAAGGCTAAGTT 57.579 37.500 0.00 0.00 35.21 2.66
3328 3827 6.613153 ATGTGTTTCTAGAGAAGGCTAAGT 57.387 37.500 0.00 0.00 35.21 2.24
3329 3828 9.436957 TTTAATGTGTTTCTAGAGAAGGCTAAG 57.563 33.333 0.00 0.00 35.21 2.18
3330 3829 9.787435 TTTTAATGTGTTTCTAGAGAAGGCTAA 57.213 29.630 0.00 0.00 35.21 3.09
3331 3830 9.959721 ATTTTAATGTGTTTCTAGAGAAGGCTA 57.040 29.630 0.00 0.00 35.21 3.93
3332 3831 8.870075 ATTTTAATGTGTTTCTAGAGAAGGCT 57.130 30.769 0.00 0.00 35.21 4.58
3333 3832 9.561270 GAATTTTAATGTGTTTCTAGAGAAGGC 57.439 33.333 0.00 0.00 35.21 4.35
3342 3841 9.030301 CGTTTCCTTGAATTTTAATGTGTTTCT 57.970 29.630 0.00 0.00 0.00 2.52
3343 3842 8.272866 CCGTTTCCTTGAATTTTAATGTGTTTC 58.727 33.333 0.00 0.00 0.00 2.78
3344 3843 7.766738 ACCGTTTCCTTGAATTTTAATGTGTTT 59.233 29.630 0.00 0.00 0.00 2.83
3345 3844 7.269316 ACCGTTTCCTTGAATTTTAATGTGTT 58.731 30.769 0.00 0.00 0.00 3.32
3346 3845 6.811954 ACCGTTTCCTTGAATTTTAATGTGT 58.188 32.000 0.00 0.00 0.00 3.72
3347 3846 8.804688 TTACCGTTTCCTTGAATTTTAATGTG 57.195 30.769 0.00 0.00 0.00 3.21
3350 3849 9.777575 CGTATTACCGTTTCCTTGAATTTTAAT 57.222 29.630 0.00 0.00 0.00 1.40
3351 3850 8.235905 CCGTATTACCGTTTCCTTGAATTTTAA 58.764 33.333 0.00 0.00 0.00 1.52
3352 3851 7.605691 TCCGTATTACCGTTTCCTTGAATTTTA 59.394 33.333 0.00 0.00 0.00 1.52
3353 3852 6.430616 TCCGTATTACCGTTTCCTTGAATTTT 59.569 34.615 0.00 0.00 0.00 1.82
3354 3853 5.939296 TCCGTATTACCGTTTCCTTGAATTT 59.061 36.000 0.00 0.00 0.00 1.82
3355 3854 5.490159 TCCGTATTACCGTTTCCTTGAATT 58.510 37.500 0.00 0.00 0.00 2.17
3356 3855 5.088680 TCCGTATTACCGTTTCCTTGAAT 57.911 39.130 0.00 0.00 0.00 2.57
3357 3856 4.533919 TCCGTATTACCGTTTCCTTGAA 57.466 40.909 0.00 0.00 0.00 2.69
3358 3857 4.160065 TGATCCGTATTACCGTTTCCTTGA 59.840 41.667 0.00 0.00 0.00 3.02
3359 3858 4.435425 TGATCCGTATTACCGTTTCCTTG 58.565 43.478 0.00 0.00 0.00 3.61
3360 3859 4.741321 TGATCCGTATTACCGTTTCCTT 57.259 40.909 0.00 0.00 0.00 3.36
3361 3860 4.950205 ATGATCCGTATTACCGTTTCCT 57.050 40.909 0.00 0.00 0.00 3.36
3362 3861 5.051816 TCAATGATCCGTATTACCGTTTCC 58.948 41.667 0.00 0.00 0.00 3.13
3363 3862 6.645415 AGATCAATGATCCGTATTACCGTTTC 59.355 38.462 18.69 0.00 39.66 2.78
3364 3863 6.522054 AGATCAATGATCCGTATTACCGTTT 58.478 36.000 18.69 0.00 39.66 3.60
3365 3864 6.097915 AGATCAATGATCCGTATTACCGTT 57.902 37.500 18.69 0.00 39.66 4.44
3366 3865 5.723672 AGATCAATGATCCGTATTACCGT 57.276 39.130 18.69 0.00 39.66 4.83
3367 3866 6.617879 TGTAGATCAATGATCCGTATTACCG 58.382 40.000 18.69 0.00 39.66 4.02
3368 3867 7.870954 TGTTGTAGATCAATGATCCGTATTACC 59.129 37.037 18.69 4.82 39.66 2.85
3369 3868 8.812147 TGTTGTAGATCAATGATCCGTATTAC 57.188 34.615 18.69 14.10 39.66 1.89
3371 3870 9.645059 CTATGTTGTAGATCAATGATCCGTATT 57.355 33.333 18.69 3.62 39.66 1.89
3372 3871 9.025041 TCTATGTTGTAGATCAATGATCCGTAT 57.975 33.333 18.69 3.98 39.66 3.06
3373 3872 8.404107 TCTATGTTGTAGATCAATGATCCGTA 57.596 34.615 18.69 8.44 39.66 4.02
3374 3873 7.290110 TCTATGTTGTAGATCAATGATCCGT 57.710 36.000 18.69 7.78 39.66 4.69
3455 3954 9.268282 TGTCTATCTAAATGGGAGTTCTTAAGT 57.732 33.333 1.63 0.00 0.00 2.24
3459 3958 8.214364 GGAATGTCTATCTAAATGGGAGTTCTT 58.786 37.037 0.00 0.00 0.00 2.52
3460 3959 7.570607 AGGAATGTCTATCTAAATGGGAGTTCT 59.429 37.037 0.00 0.00 0.00 3.01
3461 3960 7.740805 AGGAATGTCTATCTAAATGGGAGTTC 58.259 38.462 0.00 0.00 0.00 3.01
3462 3961 7.348274 TGAGGAATGTCTATCTAAATGGGAGTT 59.652 37.037 0.00 0.00 0.00 3.01
3463 3962 6.846505 TGAGGAATGTCTATCTAAATGGGAGT 59.153 38.462 0.00 0.00 0.00 3.85
3464 3963 7.308450 TGAGGAATGTCTATCTAAATGGGAG 57.692 40.000 0.00 0.00 0.00 4.30
3465 3964 7.348274 ACTTGAGGAATGTCTATCTAAATGGGA 59.652 37.037 0.00 0.00 0.00 4.37
3466 3965 7.512992 ACTTGAGGAATGTCTATCTAAATGGG 58.487 38.462 0.00 0.00 0.00 4.00
3467 3966 8.206867 TGACTTGAGGAATGTCTATCTAAATGG 58.793 37.037 0.00 0.00 0.00 3.16
3468 3967 9.775854 ATGACTTGAGGAATGTCTATCTAAATG 57.224 33.333 0.00 0.00 0.00 2.32
3469 3968 9.995003 GATGACTTGAGGAATGTCTATCTAAAT 57.005 33.333 0.00 0.00 0.00 1.40
3470 3969 9.206690 AGATGACTTGAGGAATGTCTATCTAAA 57.793 33.333 0.00 0.00 32.48 1.85
3471 3970 8.774546 AGATGACTTGAGGAATGTCTATCTAA 57.225 34.615 0.00 0.00 32.48 2.10
3472 3971 9.868160 TTAGATGACTTGAGGAATGTCTATCTA 57.132 33.333 0.00 0.00 34.21 1.98
3473 3972 8.774546 TTAGATGACTTGAGGAATGTCTATCT 57.225 34.615 0.00 0.00 35.28 1.98
3474 3973 9.995003 ATTTAGATGACTTGAGGAATGTCTATC 57.005 33.333 0.00 0.00 0.00 2.08
3475 3974 9.775854 CATTTAGATGACTTGAGGAATGTCTAT 57.224 33.333 0.00 0.00 35.16 1.98
3476 3975 8.981659 TCATTTAGATGACTTGAGGAATGTCTA 58.018 33.333 0.00 0.00 37.37 2.59
3477 3976 7.855375 TCATTTAGATGACTTGAGGAATGTCT 58.145 34.615 0.00 0.00 37.37 3.41
3478 3977 8.674263 ATCATTTAGATGACTTGAGGAATGTC 57.326 34.615 0.00 0.00 44.64 3.06
3482 3981 9.605275 CACTTATCATTTAGATGACTTGAGGAA 57.395 33.333 0.00 0.00 44.64 3.36
3483 3982 8.981659 TCACTTATCATTTAGATGACTTGAGGA 58.018 33.333 0.00 0.00 44.64 3.71
3484 3983 9.775854 ATCACTTATCATTTAGATGACTTGAGG 57.224 33.333 0.00 0.00 44.64 3.86
3486 3985 9.770097 GGATCACTTATCATTTAGATGACTTGA 57.230 33.333 0.00 0.27 44.64 3.02
3487 3986 9.551734 TGGATCACTTATCATTTAGATGACTTG 57.448 33.333 0.00 0.00 44.64 3.16
3500 3999 8.956426 GGTTTAGTTGATTTGGATCACTTATCA 58.044 33.333 0.00 0.00 41.84 2.15
3501 4000 8.956426 TGGTTTAGTTGATTTGGATCACTTATC 58.044 33.333 0.00 0.00 41.84 1.75
3502 4001 8.877864 TGGTTTAGTTGATTTGGATCACTTAT 57.122 30.769 0.00 0.00 41.84 1.73
3503 4002 8.739039 CATGGTTTAGTTGATTTGGATCACTTA 58.261 33.333 0.00 0.00 41.84 2.24
3504 4003 7.233348 ACATGGTTTAGTTGATTTGGATCACTT 59.767 33.333 0.00 0.00 41.84 3.16
3505 4004 6.721208 ACATGGTTTAGTTGATTTGGATCACT 59.279 34.615 0.00 0.00 41.84 3.41
3506 4005 6.924111 ACATGGTTTAGTTGATTTGGATCAC 58.076 36.000 0.00 0.00 41.84 3.06
3507 4006 6.152661 GGACATGGTTTAGTTGATTTGGATCA 59.847 38.462 0.00 0.00 40.46 2.92
3508 4007 6.564328 GGACATGGTTTAGTTGATTTGGATC 58.436 40.000 0.00 0.00 0.00 3.36
3509 4008 5.125417 CGGACATGGTTTAGTTGATTTGGAT 59.875 40.000 0.00 0.00 0.00 3.41
3510 4009 4.457603 CGGACATGGTTTAGTTGATTTGGA 59.542 41.667 0.00 0.00 0.00 3.53
3511 4010 4.457603 TCGGACATGGTTTAGTTGATTTGG 59.542 41.667 0.00 0.00 0.00 3.28
3512 4011 5.621197 TCGGACATGGTTTAGTTGATTTG 57.379 39.130 0.00 0.00 0.00 2.32
3513 4012 5.943416 TGATCGGACATGGTTTAGTTGATTT 59.057 36.000 0.00 0.00 0.00 2.17
3514 4013 5.496556 TGATCGGACATGGTTTAGTTGATT 58.503 37.500 0.00 0.00 0.00 2.57
3515 4014 5.097742 TGATCGGACATGGTTTAGTTGAT 57.902 39.130 0.00 0.00 0.00 2.57
3516 4015 4.545208 TGATCGGACATGGTTTAGTTGA 57.455 40.909 0.00 0.00 0.00 3.18
3517 4016 4.875536 TGATGATCGGACATGGTTTAGTTG 59.124 41.667 0.00 0.00 0.00 3.16
3518 4017 4.876107 GTGATGATCGGACATGGTTTAGTT 59.124 41.667 0.00 0.00 0.00 2.24
3519 4018 4.442706 GTGATGATCGGACATGGTTTAGT 58.557 43.478 0.00 0.00 0.00 2.24
3520 4019 3.490896 CGTGATGATCGGACATGGTTTAG 59.509 47.826 0.00 0.00 0.00 1.85
3521 4020 3.118920 ACGTGATGATCGGACATGGTTTA 60.119 43.478 0.00 0.00 0.00 2.01
3522 4021 2.279741 CGTGATGATCGGACATGGTTT 58.720 47.619 0.00 0.00 0.00 3.27
3523 4022 1.207089 ACGTGATGATCGGACATGGTT 59.793 47.619 0.00 0.00 0.00 3.67
3524 4023 0.824109 ACGTGATGATCGGACATGGT 59.176 50.000 0.00 0.00 0.00 3.55
3525 4024 1.202405 TCACGTGATGATCGGACATGG 60.202 52.381 15.76 0.00 29.99 3.66
3526 4025 2.122564 CTCACGTGATGATCGGACATG 58.877 52.381 20.40 0.00 36.48 3.21
3527 4026 1.067669 CCTCACGTGATGATCGGACAT 59.932 52.381 20.40 0.00 36.48 3.06
3528 4027 0.455815 CCTCACGTGATGATCGGACA 59.544 55.000 20.40 0.00 36.48 4.02
3529 4028 0.456221 ACCTCACGTGATGATCGGAC 59.544 55.000 24.96 0.00 36.48 4.79
3530 4029 0.455815 CACCTCACGTGATGATCGGA 59.544 55.000 24.96 0.00 46.20 4.55
3531 4030 0.528466 CCACCTCACGTGATGATCGG 60.528 60.000 24.96 20.74 46.20 4.18
3532 4031 0.455815 TCCACCTCACGTGATGATCG 59.544 55.000 24.96 10.91 46.20 3.69
3533 4032 1.478510 ACTCCACCTCACGTGATGATC 59.521 52.381 24.96 0.00 46.20 2.92
3534 4033 1.561643 ACTCCACCTCACGTGATGAT 58.438 50.000 24.96 8.96 46.20 2.45
3535 4034 2.092323 CTACTCCACCTCACGTGATGA 58.908 52.381 24.96 15.12 46.20 2.92
3536 4035 1.819288 ACTACTCCACCTCACGTGATG 59.181 52.381 20.40 18.99 46.20 3.07
3537 4036 2.217510 ACTACTCCACCTCACGTGAT 57.782 50.000 20.40 1.42 46.20 3.06
3538 4037 1.991121 AACTACTCCACCTCACGTGA 58.009 50.000 18.88 18.88 46.20 4.35
3539 4038 2.814280 AAACTACTCCACCTCACGTG 57.186 50.000 9.94 9.94 42.62 4.49
3540 4039 2.696707 TGAAAACTACTCCACCTCACGT 59.303 45.455 0.00 0.00 0.00 4.49
3541 4040 3.380479 TGAAAACTACTCCACCTCACG 57.620 47.619 0.00 0.00 0.00 4.35
3542 4041 5.305585 TCATTGAAAACTACTCCACCTCAC 58.694 41.667 0.00 0.00 0.00 3.51
3543 4042 5.560722 TCATTGAAAACTACTCCACCTCA 57.439 39.130 0.00 0.00 0.00 3.86
3544 4043 6.173339 TCATCATTGAAAACTACTCCACCTC 58.827 40.000 0.00 0.00 0.00 3.85
3545 4044 6.126863 TCATCATTGAAAACTACTCCACCT 57.873 37.500 0.00 0.00 0.00 4.00
3546 4045 6.206634 TGTTCATCATTGAAAACTACTCCACC 59.793 38.462 13.33 0.00 43.29 4.61
3547 4046 7.202016 TGTTCATCATTGAAAACTACTCCAC 57.798 36.000 13.33 0.00 43.29 4.02
3548 4047 7.884877 AGATGTTCATCATTGAAAACTACTCCA 59.115 33.333 14.05 0.00 43.29 3.86
3549 4048 8.273780 AGATGTTCATCATTGAAAACTACTCC 57.726 34.615 14.05 3.12 43.29 3.85
3550 4049 9.160496 AGAGATGTTCATCATTGAAAACTACTC 57.840 33.333 14.05 19.27 43.29 2.59
3554 4053 9.458727 ACATAGAGATGTTCATCATTGAAAACT 57.541 29.630 14.05 0.00 44.18 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.