Multiple sequence alignment - TraesCS7B01G396000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G396000 chr7B 100.000 2174 0 0 1 2174 662755038 662757211 0.000000e+00 4015
1 TraesCS7B01G396000 chr7B 99.281 139 0 1 2036 2174 154209151 154209014 1.290000e-62 250
2 TraesCS7B01G396000 chr3B 98.971 2040 16 4 1 2035 101924873 101922834 0.000000e+00 3646
3 TraesCS7B01G396000 chr3B 85.882 255 17 7 1757 2011 413875548 413875783 9.960000e-64 254
4 TraesCS7B01G396000 chr3B 99.281 139 0 1 2036 2174 271053759 271053896 1.290000e-62 250
5 TraesCS7B01G396000 chr3B 95.652 69 1 2 1833 1899 416935872 416935804 2.280000e-20 110
6 TraesCS7B01G396000 chr3A 98.728 2044 17 4 1 2035 105556960 105559003 0.000000e+00 3622
7 TraesCS7B01G396000 chr1B 98.527 2037 26 4 1 2035 633716968 633714934 0.000000e+00 3592
8 TraesCS7B01G396000 chr1B 98.571 140 2 0 2035 2174 139799289 139799428 4.630000e-62 248
9 TraesCS7B01G396000 chr1B 98.571 140 2 0 2035 2174 432181004 432181143 4.630000e-62 248
10 TraesCS7B01G396000 chr5D 98.139 2042 29 6 1 2035 503339437 503337398 0.000000e+00 3552
11 TraesCS7B01G396000 chr5D 97.698 2042 35 6 1 2035 503313499 503311463 0.000000e+00 3500
12 TraesCS7B01G396000 chr1D 97.451 2040 42 6 1 2035 51831963 51833997 0.000000e+00 3470
13 TraesCS7B01G396000 chr1D 97.056 2038 31 7 1 2035 254459405 254457394 0.000000e+00 3404
14 TraesCS7B01G396000 chr1A 98.502 1869 23 3 172 2035 554482083 554480215 0.000000e+00 3291
15 TraesCS7B01G396000 chr4A 95.336 2037 77 3 1 2035 309446411 309448431 0.000000e+00 3219
16 TraesCS7B01G396000 chr5B 99.281 139 0 1 2036 2174 373366280 373366143 1.290000e-62 250
17 TraesCS7B01G396000 chrUn 98.571 140 2 0 2035 2174 251827158 251827019 4.630000e-62 248
18 TraesCS7B01G396000 chrUn 98.571 140 2 0 2035 2174 251838410 251838271 4.630000e-62 248
19 TraesCS7B01G396000 chrUn 98.571 140 2 0 2035 2174 261127102 261126963 4.630000e-62 248
20 TraesCS7B01G396000 chr4B 98.571 140 2 0 2035 2174 634230299 634230160 4.630000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G396000 chr7B 662755038 662757211 2173 False 4015 4015 100.000 1 2174 1 chr7B.!!$F1 2173
1 TraesCS7B01G396000 chr3B 101922834 101924873 2039 True 3646 3646 98.971 1 2035 1 chr3B.!!$R1 2034
2 TraesCS7B01G396000 chr3A 105556960 105559003 2043 False 3622 3622 98.728 1 2035 1 chr3A.!!$F1 2034
3 TraesCS7B01G396000 chr1B 633714934 633716968 2034 True 3592 3592 98.527 1 2035 1 chr1B.!!$R1 2034
4 TraesCS7B01G396000 chr5D 503337398 503339437 2039 True 3552 3552 98.139 1 2035 1 chr5D.!!$R2 2034
5 TraesCS7B01G396000 chr5D 503311463 503313499 2036 True 3500 3500 97.698 1 2035 1 chr5D.!!$R1 2034
6 TraesCS7B01G396000 chr1D 51831963 51833997 2034 False 3470 3470 97.451 1 2035 1 chr1D.!!$F1 2034
7 TraesCS7B01G396000 chr1D 254457394 254459405 2011 True 3404 3404 97.056 1 2035 1 chr1D.!!$R1 2034
8 TraesCS7B01G396000 chr1A 554480215 554482083 1868 True 3291 3291 98.502 172 2035 1 chr1A.!!$R1 1863
9 TraesCS7B01G396000 chr4A 309446411 309448431 2020 False 3219 3219 95.336 1 2035 1 chr4A.!!$F1 2034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 225 1.001746 CTTCTGCTTCTGGCTGTCTCA 59.998 52.381 0.0 0.0 42.39 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 2126 1.843851 TGACACTCTTCCAAACCCACT 59.156 47.619 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 225 1.001746 CTTCTGCTTCTGGCTGTCTCA 59.998 52.381 0.00 0.00 42.39 3.27
918 938 8.800972 CAAAAATAGTCAATTCAATGATGACCG 58.199 33.333 11.97 0.00 43.46 4.79
1244 1264 5.408604 TGAGTAAAGCTAAAGCAACAGTAGC 59.591 40.000 4.54 0.00 45.16 3.58
1394 1414 6.270927 CAGGGACCATATTCTTCTCCAATCTA 59.729 42.308 0.00 0.00 0.00 1.98
1548 1568 4.274459 GTGATGAGTACTTGGGCATGAATC 59.726 45.833 0.00 0.00 0.00 2.52
2040 2082 2.913777 CGATATATTCGCGACCCTCA 57.086 50.000 9.15 0.00 41.69 3.86
2041 2083 3.422417 CGATATATTCGCGACCCTCAT 57.578 47.619 9.15 0.89 41.69 2.90
2042 2084 3.108881 CGATATATTCGCGACCCTCATG 58.891 50.000 9.15 0.00 41.69 3.07
2043 2085 3.181500 CGATATATTCGCGACCCTCATGA 60.181 47.826 9.15 0.00 41.69 3.07
2044 2086 4.498177 CGATATATTCGCGACCCTCATGAT 60.498 45.833 9.15 0.00 41.69 2.45
2045 2087 2.438868 TATTCGCGACCCTCATGATG 57.561 50.000 9.15 0.00 0.00 3.07
2046 2088 0.752658 ATTCGCGACCCTCATGATGA 59.247 50.000 9.15 0.00 0.00 2.92
2047 2089 0.534873 TTCGCGACCCTCATGATGAA 59.465 50.000 9.15 0.00 0.00 2.57
2048 2090 0.752658 TCGCGACCCTCATGATGAAT 59.247 50.000 3.71 0.00 0.00 2.57
2049 2091 1.960689 TCGCGACCCTCATGATGAATA 59.039 47.619 3.71 0.00 0.00 1.75
2050 2092 2.562738 TCGCGACCCTCATGATGAATAT 59.437 45.455 3.71 0.00 0.00 1.28
2051 2093 2.669924 CGCGACCCTCATGATGAATATG 59.330 50.000 0.00 0.00 0.00 1.78
2052 2094 3.614870 CGCGACCCTCATGATGAATATGA 60.615 47.826 0.00 0.00 33.76 2.15
2088 2130 8.761575 AGTGTTTGCAATAATATTGAAAGTGG 57.238 30.769 16.45 0.00 0.00 4.00
2089 2131 7.818930 AGTGTTTGCAATAATATTGAAAGTGGG 59.181 33.333 16.45 0.00 0.00 4.61
2090 2132 7.602265 GTGTTTGCAATAATATTGAAAGTGGGT 59.398 33.333 16.45 0.00 0.00 4.51
2091 2133 8.153550 TGTTTGCAATAATATTGAAAGTGGGTT 58.846 29.630 16.45 0.00 0.00 4.11
2092 2134 8.998377 GTTTGCAATAATATTGAAAGTGGGTTT 58.002 29.630 16.45 0.00 0.00 3.27
2093 2135 8.545229 TTGCAATAATATTGAAAGTGGGTTTG 57.455 30.769 16.45 0.00 0.00 2.93
2094 2136 7.102346 TGCAATAATATTGAAAGTGGGTTTGG 58.898 34.615 16.45 0.00 0.00 3.28
2095 2137 7.038729 TGCAATAATATTGAAAGTGGGTTTGGA 60.039 33.333 16.45 0.00 0.00 3.53
2096 2138 7.821846 GCAATAATATTGAAAGTGGGTTTGGAA 59.178 33.333 16.45 0.00 0.00 3.53
2097 2139 9.369904 CAATAATATTGAAAGTGGGTTTGGAAG 57.630 33.333 7.17 0.00 0.00 3.46
2098 2140 8.893563 ATAATATTGAAAGTGGGTTTGGAAGA 57.106 30.769 0.00 0.00 0.00 2.87
2099 2141 6.840780 ATATTGAAAGTGGGTTTGGAAGAG 57.159 37.500 0.00 0.00 0.00 2.85
2100 2142 3.662759 TGAAAGTGGGTTTGGAAGAGT 57.337 42.857 0.00 0.00 0.00 3.24
2101 2143 3.287222 TGAAAGTGGGTTTGGAAGAGTG 58.713 45.455 0.00 0.00 0.00 3.51
2102 2144 3.288092 GAAAGTGGGTTTGGAAGAGTGT 58.712 45.455 0.00 0.00 0.00 3.55
2103 2145 2.640316 AGTGGGTTTGGAAGAGTGTC 57.360 50.000 0.00 0.00 0.00 3.67
2104 2146 1.843851 AGTGGGTTTGGAAGAGTGTCA 59.156 47.619 0.00 0.00 0.00 3.58
2105 2147 2.241176 AGTGGGTTTGGAAGAGTGTCAA 59.759 45.455 0.00 0.00 0.00 3.18
2106 2148 2.357952 GTGGGTTTGGAAGAGTGTCAAC 59.642 50.000 0.00 0.00 0.00 3.18
2107 2149 2.241176 TGGGTTTGGAAGAGTGTCAACT 59.759 45.455 0.00 0.00 40.21 3.16
2108 2150 3.288092 GGGTTTGGAAGAGTGTCAACTT 58.712 45.455 0.00 0.00 36.52 2.66
2109 2151 3.699538 GGGTTTGGAAGAGTGTCAACTTT 59.300 43.478 0.00 0.00 36.52 2.66
2110 2152 4.885325 GGGTTTGGAAGAGTGTCAACTTTA 59.115 41.667 0.00 0.00 36.52 1.85
2111 2153 5.008712 GGGTTTGGAAGAGTGTCAACTTTAG 59.991 44.000 0.00 0.00 36.52 1.85
2112 2154 5.820947 GGTTTGGAAGAGTGTCAACTTTAGA 59.179 40.000 0.00 0.00 36.52 2.10
2113 2155 6.486993 GGTTTGGAAGAGTGTCAACTTTAGAT 59.513 38.462 0.00 0.00 36.52 1.98
2114 2156 7.308049 GGTTTGGAAGAGTGTCAACTTTAGATC 60.308 40.741 0.00 0.00 36.52 2.75
2115 2157 5.794894 TGGAAGAGTGTCAACTTTAGATCC 58.205 41.667 0.00 0.00 36.52 3.36
2116 2158 5.179533 GGAAGAGTGTCAACTTTAGATCCC 58.820 45.833 0.00 0.00 36.52 3.85
2117 2159 5.280011 GGAAGAGTGTCAACTTTAGATCCCA 60.280 44.000 0.00 0.00 36.52 4.37
2118 2160 5.153950 AGAGTGTCAACTTTAGATCCCAC 57.846 43.478 0.00 0.00 36.52 4.61
2119 2161 4.593206 AGAGTGTCAACTTTAGATCCCACA 59.407 41.667 0.00 0.00 36.52 4.17
2120 2162 5.249393 AGAGTGTCAACTTTAGATCCCACAT 59.751 40.000 0.00 0.00 36.52 3.21
2121 2163 6.440647 AGAGTGTCAACTTTAGATCCCACATA 59.559 38.462 0.00 0.00 36.52 2.29
2122 2164 7.126421 AGAGTGTCAACTTTAGATCCCACATAT 59.874 37.037 0.00 0.00 36.52 1.78
2123 2165 7.633789 AGTGTCAACTTTAGATCCCACATATT 58.366 34.615 0.00 0.00 30.14 1.28
2124 2166 8.109634 AGTGTCAACTTTAGATCCCACATATTT 58.890 33.333 0.00 0.00 30.14 1.40
2125 2167 8.184192 GTGTCAACTTTAGATCCCACATATTTG 58.816 37.037 0.00 0.00 0.00 2.32
2126 2168 7.339212 TGTCAACTTTAGATCCCACATATTTGG 59.661 37.037 0.47 0.47 36.26 3.28
2127 2169 7.556275 GTCAACTTTAGATCCCACATATTTGGA 59.444 37.037 9.59 0.00 39.24 3.53
2128 2170 7.775093 TCAACTTTAGATCCCACATATTTGGAG 59.225 37.037 9.59 0.00 39.24 3.86
2129 2171 7.213178 ACTTTAGATCCCACATATTTGGAGT 57.787 36.000 9.59 0.36 39.24 3.85
2130 2172 8.331931 ACTTTAGATCCCACATATTTGGAGTA 57.668 34.615 9.59 0.00 39.24 2.59
2131 2173 8.949421 ACTTTAGATCCCACATATTTGGAGTAT 58.051 33.333 9.59 0.40 39.24 2.12
2132 2174 9.224267 CTTTAGATCCCACATATTTGGAGTATG 57.776 37.037 9.59 0.00 39.24 2.39
2133 2175 6.770286 AGATCCCACATATTTGGAGTATGT 57.230 37.500 9.59 0.00 42.01 2.29
2134 2176 7.154191 AGATCCCACATATTTGGAGTATGTT 57.846 36.000 9.59 0.00 39.95 2.71
2135 2177 7.227156 AGATCCCACATATTTGGAGTATGTTC 58.773 38.462 9.59 0.00 39.95 3.18
2136 2178 6.320434 TCCCACATATTTGGAGTATGTTCA 57.680 37.500 9.59 0.00 39.95 3.18
2137 2179 6.726379 TCCCACATATTTGGAGTATGTTCAA 58.274 36.000 9.59 0.00 39.95 2.69
2138 2180 7.353525 TCCCACATATTTGGAGTATGTTCAAT 58.646 34.615 9.59 0.00 39.95 2.57
2139 2181 7.502226 TCCCACATATTTGGAGTATGTTCAATC 59.498 37.037 9.59 0.00 39.95 2.67
2140 2182 7.503566 CCCACATATTTGGAGTATGTTCAATCT 59.496 37.037 9.59 0.00 39.95 2.40
2141 2183 8.906867 CCACATATTTGGAGTATGTTCAATCTT 58.093 33.333 1.27 0.00 39.95 2.40
2171 2213 9.942850 ATATTTTTGATAAAAGTGGGTTTGGAG 57.057 29.630 0.00 0.00 36.73 3.86
2172 2214 7.425224 TTTTTGATAAAAGTGGGTTTGGAGA 57.575 32.000 0.00 0.00 0.00 3.71
2173 2215 6.648879 TTTGATAAAAGTGGGTTTGGAGAG 57.351 37.500 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 114 2.817258 TGGCACTAGCGCTTTTATTTGT 59.183 40.909 18.68 0.57 43.41 2.83
221 225 4.532521 AGGACAAGCTGTAGAAGGTATTGT 59.467 41.667 0.00 0.00 34.84 2.71
623 635 9.859427 CACTTTAAGCAATGATTTTAGAATCCA 57.141 29.630 3.70 0.00 40.79 3.41
761 773 9.344772 GTTGTAGGAGAGAGAATAGAATAGACA 57.655 37.037 0.00 0.00 0.00 3.41
918 938 5.426833 AGCCTATATAGGTGAATCCATGGAC 59.573 44.000 26.27 5.93 45.42 4.02
1098 1118 7.885297 TCCTAGAAGATTTCACAAAACCATTG 58.115 34.615 0.00 0.00 0.00 2.82
1244 1264 3.436704 AGCGCCCACGAATGATATAAATG 59.563 43.478 2.29 0.00 43.93 2.32
1394 1414 6.861065 TTATTCGAGACTTGAGCAAAACTT 57.139 33.333 0.00 0.00 0.00 2.66
1548 1568 3.085952 TGGCAAATAGGAGGTTTCCAG 57.914 47.619 0.00 0.00 46.64 3.86
1924 1966 9.121806 AGGGCCATTCTCTCTATATAAGAAATT 57.878 33.333 6.18 0.00 33.10 1.82
1944 1986 4.837860 AGTATTTTCAATTTGTGAGGGCCA 59.162 37.500 6.18 0.00 37.61 5.36
2035 2077 9.901172 TTATCAATCTCATATTCATCATGAGGG 57.099 33.333 7.64 0.00 46.23 4.30
2062 2104 9.853555 CCACTTTCAATATTATTGCAAACACTA 57.146 29.630 1.71 0.00 0.00 2.74
2063 2105 7.818930 CCCACTTTCAATATTATTGCAAACACT 59.181 33.333 1.71 0.00 0.00 3.55
2064 2106 7.602265 ACCCACTTTCAATATTATTGCAAACAC 59.398 33.333 1.71 0.00 0.00 3.32
2065 2107 7.675062 ACCCACTTTCAATATTATTGCAAACA 58.325 30.769 1.71 0.00 0.00 2.83
2066 2108 8.546597 AACCCACTTTCAATATTATTGCAAAC 57.453 30.769 1.71 0.00 0.00 2.93
2067 2109 8.997323 CAAACCCACTTTCAATATTATTGCAAA 58.003 29.630 1.71 10.79 0.00 3.68
2068 2110 7.605691 CCAAACCCACTTTCAATATTATTGCAA 59.394 33.333 0.00 0.00 0.00 4.08
2069 2111 7.038729 TCCAAACCCACTTTCAATATTATTGCA 60.039 33.333 10.92 0.00 0.00 4.08
2070 2112 7.327214 TCCAAACCCACTTTCAATATTATTGC 58.673 34.615 10.92 0.00 0.00 3.56
2071 2113 9.369904 CTTCCAAACCCACTTTCAATATTATTG 57.630 33.333 9.70 9.70 0.00 1.90
2072 2114 9.320295 TCTTCCAAACCCACTTTCAATATTATT 57.680 29.630 0.00 0.00 0.00 1.40
2073 2115 8.893563 TCTTCCAAACCCACTTTCAATATTAT 57.106 30.769 0.00 0.00 0.00 1.28
2074 2116 7.947890 ACTCTTCCAAACCCACTTTCAATATTA 59.052 33.333 0.00 0.00 0.00 0.98
2075 2117 6.782494 ACTCTTCCAAACCCACTTTCAATATT 59.218 34.615 0.00 0.00 0.00 1.28
2076 2118 6.209391 CACTCTTCCAAACCCACTTTCAATAT 59.791 38.462 0.00 0.00 0.00 1.28
2077 2119 5.534654 CACTCTTCCAAACCCACTTTCAATA 59.465 40.000 0.00 0.00 0.00 1.90
2078 2120 4.342092 CACTCTTCCAAACCCACTTTCAAT 59.658 41.667 0.00 0.00 0.00 2.57
2079 2121 3.699038 CACTCTTCCAAACCCACTTTCAA 59.301 43.478 0.00 0.00 0.00 2.69
2080 2122 3.287222 CACTCTTCCAAACCCACTTTCA 58.713 45.455 0.00 0.00 0.00 2.69
2081 2123 3.288092 ACACTCTTCCAAACCCACTTTC 58.712 45.455 0.00 0.00 0.00 2.62
2082 2124 3.288092 GACACTCTTCCAAACCCACTTT 58.712 45.455 0.00 0.00 0.00 2.66
2083 2125 2.241176 TGACACTCTTCCAAACCCACTT 59.759 45.455 0.00 0.00 0.00 3.16
2084 2126 1.843851 TGACACTCTTCCAAACCCACT 59.156 47.619 0.00 0.00 0.00 4.00
2085 2127 2.341846 TGACACTCTTCCAAACCCAC 57.658 50.000 0.00 0.00 0.00 4.61
2086 2128 2.241176 AGTTGACACTCTTCCAAACCCA 59.759 45.455 0.00 0.00 0.00 4.51
2087 2129 2.932261 AGTTGACACTCTTCCAAACCC 58.068 47.619 0.00 0.00 0.00 4.11
2088 2130 4.983671 AAAGTTGACACTCTTCCAAACC 57.016 40.909 0.00 0.00 30.45 3.27
2089 2131 6.920569 TCTAAAGTTGACACTCTTCCAAAC 57.079 37.500 0.00 0.00 30.45 2.93
2090 2132 6.710744 GGATCTAAAGTTGACACTCTTCCAAA 59.289 38.462 0.00 0.00 30.45 3.28
2091 2133 6.231211 GGATCTAAAGTTGACACTCTTCCAA 58.769 40.000 0.00 0.00 30.45 3.53
2092 2134 5.280011 GGGATCTAAAGTTGACACTCTTCCA 60.280 44.000 0.00 0.00 30.45 3.53
2093 2135 5.179533 GGGATCTAAAGTTGACACTCTTCC 58.820 45.833 0.00 0.00 30.45 3.46
2094 2136 5.639931 GTGGGATCTAAAGTTGACACTCTTC 59.360 44.000 0.00 0.00 30.45 2.87
2095 2137 5.071788 TGTGGGATCTAAAGTTGACACTCTT 59.928 40.000 0.00 0.00 30.45 2.85
2096 2138 4.593206 TGTGGGATCTAAAGTTGACACTCT 59.407 41.667 0.00 0.00 30.45 3.24
2097 2139 4.894784 TGTGGGATCTAAAGTTGACACTC 58.105 43.478 0.00 0.00 30.45 3.51
2098 2140 4.974645 TGTGGGATCTAAAGTTGACACT 57.025 40.909 0.00 0.00 33.11 3.55
2099 2141 7.865706 AATATGTGGGATCTAAAGTTGACAC 57.134 36.000 0.00 0.00 0.00 3.67
2100 2142 7.339212 CCAAATATGTGGGATCTAAAGTTGACA 59.661 37.037 3.67 0.00 34.77 3.58
2101 2143 7.556275 TCCAAATATGTGGGATCTAAAGTTGAC 59.444 37.037 12.25 0.00 39.34 3.18
2102 2144 7.638444 TCCAAATATGTGGGATCTAAAGTTGA 58.362 34.615 12.25 0.00 39.34 3.18
2103 2145 7.557719 ACTCCAAATATGTGGGATCTAAAGTTG 59.442 37.037 12.25 0.00 39.34 3.16
2104 2146 7.643123 ACTCCAAATATGTGGGATCTAAAGTT 58.357 34.615 12.25 0.00 39.34 2.66
2105 2147 7.213178 ACTCCAAATATGTGGGATCTAAAGT 57.787 36.000 12.25 3.42 39.34 2.66
2106 2148 9.224267 CATACTCCAAATATGTGGGATCTAAAG 57.776 37.037 12.25 2.79 39.34 1.85
2107 2149 8.723365 ACATACTCCAAATATGTGGGATCTAAA 58.277 33.333 12.25 0.00 40.85 1.85
2108 2150 8.275187 ACATACTCCAAATATGTGGGATCTAA 57.725 34.615 12.25 0.00 40.85 2.10
2109 2151 7.872061 ACATACTCCAAATATGTGGGATCTA 57.128 36.000 12.25 0.00 40.85 1.98
2110 2152 6.770286 ACATACTCCAAATATGTGGGATCT 57.230 37.500 12.25 0.00 40.85 2.75
2111 2153 6.998074 TGAACATACTCCAAATATGTGGGATC 59.002 38.462 12.25 0.93 41.39 3.36
2112 2154 6.910191 TGAACATACTCCAAATATGTGGGAT 58.090 36.000 12.25 3.31 41.39 3.85
2113 2155 6.320434 TGAACATACTCCAAATATGTGGGA 57.680 37.500 12.25 1.33 41.39 4.37
2114 2156 7.503566 AGATTGAACATACTCCAAATATGTGGG 59.496 37.037 12.25 5.57 41.39 4.61
2115 2157 8.455903 AGATTGAACATACTCCAAATATGTGG 57.544 34.615 5.44 5.44 41.39 4.17
2145 2187 9.942850 CTCCAAACCCACTTTTATCAAAAATAT 57.057 29.630 0.00 0.00 34.18 1.28
2146 2188 9.148879 TCTCCAAACCCACTTTTATCAAAAATA 57.851 29.630 0.00 0.00 34.18 1.40
2147 2189 8.028652 TCTCCAAACCCACTTTTATCAAAAAT 57.971 30.769 0.00 0.00 34.18 1.82
2148 2190 7.425224 TCTCCAAACCCACTTTTATCAAAAA 57.575 32.000 0.00 0.00 33.58 1.94
2149 2191 7.049799 CTCTCCAAACCCACTTTTATCAAAA 57.950 36.000 0.00 0.00 0.00 2.44
2150 2192 6.648879 CTCTCCAAACCCACTTTTATCAAA 57.351 37.500 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.