Multiple sequence alignment - TraesCS7B01G395200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G395200 chr7B 100.000 2561 0 0 1 2561 662681332 662678772 0.000000e+00 4730
1 TraesCS7B01G395200 chr7B 93.002 2172 130 12 400 2561 442357638 442359797 0.000000e+00 3149
2 TraesCS7B01G395200 chr7B 92.719 2170 144 8 400 2561 49223814 49221651 0.000000e+00 3120
3 TraesCS7B01G395200 chr6A 93.502 2170 121 13 399 2561 53151872 53154028 0.000000e+00 3208
4 TraesCS7B01G395200 chr7D 93.202 2177 121 17 395 2561 85019317 85021476 0.000000e+00 3175
5 TraesCS7B01G395200 chr6B 92.442 2183 137 14 400 2561 689112991 689110816 0.000000e+00 3092
6 TraesCS7B01G395200 chr6B 92.258 2183 142 13 400 2561 689092930 689090754 0.000000e+00 3070
7 TraesCS7B01G395200 chr6B 88.321 411 39 6 1 402 127026114 127025704 3.830000e-133 484
8 TraesCS7B01G395200 chr5B 92.004 2176 146 14 394 2561 442393821 442391666 0.000000e+00 3029
9 TraesCS7B01G395200 chr5B 87.136 412 42 7 1 402 643534167 643534577 8.350000e-125 457
10 TraesCS7B01G395200 chr4A 92.000 2175 149 17 397 2561 138429304 138427145 0.000000e+00 3029
11 TraesCS7B01G395200 chr2B 91.959 2164 163 7 400 2556 518050993 518053152 0.000000e+00 3022
12 TraesCS7B01G395200 chr2B 88.049 410 38 6 2 402 78419992 78419585 2.310000e-130 475
13 TraesCS7B01G395200 chr2B 87.500 416 42 7 1 406 170956834 170957249 2.980000e-129 472
14 TraesCS7B01G395200 chr2B 86.232 414 42 10 1 402 785740776 785741186 3.910000e-118 435
15 TraesCS7B01G395200 chr2D 90.155 386 28 6 24 400 606519908 606519524 6.370000e-136 494
16 TraesCS7B01G395200 chr3B 88.592 412 33 10 1 402 55081804 55082211 2.960000e-134 488
17 TraesCS7B01G395200 chr4B 87.379 412 42 6 1 402 396206596 396207007 4.990000e-127 464
18 TraesCS7B01G395200 chr4B 87.379 412 41 7 1 402 144771688 144772098 1.800000e-126 462


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G395200 chr7B 662678772 662681332 2560 True 4730 4730 100.000 1 2561 1 chr7B.!!$R2 2560
1 TraesCS7B01G395200 chr7B 442357638 442359797 2159 False 3149 3149 93.002 400 2561 1 chr7B.!!$F1 2161
2 TraesCS7B01G395200 chr7B 49221651 49223814 2163 True 3120 3120 92.719 400 2561 1 chr7B.!!$R1 2161
3 TraesCS7B01G395200 chr6A 53151872 53154028 2156 False 3208 3208 93.502 399 2561 1 chr6A.!!$F1 2162
4 TraesCS7B01G395200 chr7D 85019317 85021476 2159 False 3175 3175 93.202 395 2561 1 chr7D.!!$F1 2166
5 TraesCS7B01G395200 chr6B 689110816 689112991 2175 True 3092 3092 92.442 400 2561 1 chr6B.!!$R3 2161
6 TraesCS7B01G395200 chr6B 689090754 689092930 2176 True 3070 3070 92.258 400 2561 1 chr6B.!!$R2 2161
7 TraesCS7B01G395200 chr5B 442391666 442393821 2155 True 3029 3029 92.004 394 2561 1 chr5B.!!$R1 2167
8 TraesCS7B01G395200 chr4A 138427145 138429304 2159 True 3029 3029 92.000 397 2561 1 chr4A.!!$R1 2164
9 TraesCS7B01G395200 chr2B 518050993 518053152 2159 False 3022 3022 91.959 400 2556 1 chr2B.!!$F2 2156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.039618 ACAAGATGGGGCAAACGGAT 59.96 50.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2278 1.025647 GCTGCTGCTTCCTTCTCCTG 61.026 60.0 8.53 0.0 36.03 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.769272 TTTGAACAGTTTGTCCAATTTCATC 57.231 32.000 0.00 0.00 0.00 2.92
25 26 5.518812 TGAACAGTTTGTCCAATTTCATCG 58.481 37.500 0.00 0.00 0.00 3.84
26 27 5.067153 TGAACAGTTTGTCCAATTTCATCGT 59.933 36.000 0.00 0.00 0.00 3.73
27 28 4.858935 ACAGTTTGTCCAATTTCATCGTG 58.141 39.130 0.00 0.00 0.00 4.35
28 29 4.578516 ACAGTTTGTCCAATTTCATCGTGA 59.421 37.500 0.00 0.00 0.00 4.35
29 30 5.149273 CAGTTTGTCCAATTTCATCGTGAG 58.851 41.667 0.00 0.00 0.00 3.51
30 31 3.829886 TTGTCCAATTTCATCGTGAGC 57.170 42.857 0.00 0.00 0.00 4.26
31 32 3.057969 TGTCCAATTTCATCGTGAGCT 57.942 42.857 0.00 0.00 0.00 4.09
32 33 2.743664 TGTCCAATTTCATCGTGAGCTG 59.256 45.455 0.00 0.00 0.00 4.24
33 34 1.739466 TCCAATTTCATCGTGAGCTGC 59.261 47.619 0.00 0.00 0.00 5.25
34 35 1.469703 CCAATTTCATCGTGAGCTGCA 59.530 47.619 1.02 0.00 0.00 4.41
35 36 2.098607 CCAATTTCATCGTGAGCTGCAT 59.901 45.455 1.02 0.00 0.00 3.96
36 37 3.105937 CAATTTCATCGTGAGCTGCATG 58.894 45.455 1.02 0.00 34.72 4.06
37 38 2.097680 TTTCATCGTGAGCTGCATGA 57.902 45.000 1.02 0.08 46.01 3.07
41 42 2.771435 TCGTGAGCTGCATGATTGG 58.229 52.632 1.02 0.00 37.60 3.16
42 43 1.063649 CGTGAGCTGCATGATTGGC 59.936 57.895 1.02 0.00 35.44 4.52
43 44 1.650314 CGTGAGCTGCATGATTGGCA 61.650 55.000 1.02 0.00 39.32 4.92
44 45 0.179145 GTGAGCTGCATGATTGGCAC 60.179 55.000 1.02 0.00 36.11 5.01
45 46 0.609681 TGAGCTGCATGATTGGCACA 60.610 50.000 1.02 0.00 36.11 4.57
46 47 0.179145 GAGCTGCATGATTGGCACAC 60.179 55.000 1.02 0.00 39.29 3.82
47 48 0.611062 AGCTGCATGATTGGCACACT 60.611 50.000 1.02 0.00 39.29 3.55
48 49 0.179145 GCTGCATGATTGGCACACTC 60.179 55.000 0.00 0.00 39.29 3.51
55 56 2.874014 TGATTGGCACACTCATTTGGA 58.126 42.857 0.00 0.00 43.06 3.53
56 57 3.433343 TGATTGGCACACTCATTTGGAT 58.567 40.909 0.00 0.00 43.06 3.41
57 58 3.444742 TGATTGGCACACTCATTTGGATC 59.555 43.478 0.00 0.00 43.06 3.36
58 59 2.885135 TGGCACACTCATTTGGATCT 57.115 45.000 0.00 0.00 0.00 2.75
59 60 3.159213 TGGCACACTCATTTGGATCTT 57.841 42.857 0.00 0.00 0.00 2.40
60 61 3.084039 TGGCACACTCATTTGGATCTTC 58.916 45.455 0.00 0.00 0.00 2.87
61 62 3.084039 GGCACACTCATTTGGATCTTCA 58.916 45.455 0.00 0.00 0.00 3.02
62 63 3.507233 GGCACACTCATTTGGATCTTCAA 59.493 43.478 0.00 0.00 0.00 2.69
63 64 4.022068 GGCACACTCATTTGGATCTTCAAA 60.022 41.667 0.44 0.44 40.37 2.69
64 65 5.509501 GGCACACTCATTTGGATCTTCAAAA 60.510 40.000 1.91 0.00 39.64 2.44
65 66 6.161381 GCACACTCATTTGGATCTTCAAAAT 58.839 36.000 1.91 0.00 39.64 1.82
66 67 6.090358 GCACACTCATTTGGATCTTCAAAATG 59.910 38.462 9.98 9.98 39.64 2.32
67 68 7.372714 CACACTCATTTGGATCTTCAAAATGA 58.627 34.615 15.69 15.69 39.64 2.57
68 69 7.327761 CACACTCATTTGGATCTTCAAAATGAC 59.672 37.037 13.53 0.00 39.64 3.06
69 70 7.232127 ACACTCATTTGGATCTTCAAAATGACT 59.768 33.333 13.53 5.32 39.64 3.41
70 71 8.086522 CACTCATTTGGATCTTCAAAATGACTT 58.913 33.333 13.53 4.35 39.64 3.01
71 72 8.086522 ACTCATTTGGATCTTCAAAATGACTTG 58.913 33.333 13.53 8.75 39.64 3.16
72 73 7.380536 TCATTTGGATCTTCAAAATGACTTGG 58.619 34.615 13.53 0.00 39.64 3.61
73 74 6.729690 TTTGGATCTTCAAAATGACTTGGT 57.270 33.333 0.00 0.00 34.17 3.67
74 75 6.729690 TTGGATCTTCAAAATGACTTGGTT 57.270 33.333 0.00 0.00 0.00 3.67
75 76 6.088016 TGGATCTTCAAAATGACTTGGTTG 57.912 37.500 0.00 0.00 0.00 3.77
76 77 5.832595 TGGATCTTCAAAATGACTTGGTTGA 59.167 36.000 0.00 0.00 0.00 3.18
77 78 6.016024 TGGATCTTCAAAATGACTTGGTTGAG 60.016 38.462 0.00 0.00 31.98 3.02
78 79 5.186996 TCTTCAAAATGACTTGGTTGAGC 57.813 39.130 0.00 0.00 31.98 4.26
79 80 4.644234 TCTTCAAAATGACTTGGTTGAGCA 59.356 37.500 0.00 0.00 31.98 4.26
80 81 4.305989 TCAAAATGACTTGGTTGAGCAC 57.694 40.909 0.00 0.00 0.00 4.40
81 82 3.044986 CAAAATGACTTGGTTGAGCACG 58.955 45.455 0.00 0.00 0.00 5.34
82 83 1.967319 AATGACTTGGTTGAGCACGT 58.033 45.000 0.00 0.00 0.00 4.49
83 84 1.512926 ATGACTTGGTTGAGCACGTC 58.487 50.000 11.45 11.45 0.00 4.34
84 85 0.176910 TGACTTGGTTGAGCACGTCA 59.823 50.000 15.59 15.59 0.00 4.35
85 86 0.582005 GACTTGGTTGAGCACGTCAC 59.418 55.000 12.95 0.00 33.71 3.67
86 87 0.107897 ACTTGGTTGAGCACGTCACA 60.108 50.000 0.00 0.00 33.71 3.58
87 88 1.229428 CTTGGTTGAGCACGTCACAT 58.771 50.000 0.00 0.00 33.71 3.21
88 89 1.603802 CTTGGTTGAGCACGTCACATT 59.396 47.619 0.00 0.00 33.71 2.71
89 90 0.943673 TGGTTGAGCACGTCACATTG 59.056 50.000 0.00 0.00 33.71 2.82
90 91 0.238289 GGTTGAGCACGTCACATTGG 59.762 55.000 0.00 0.00 33.71 3.16
91 92 0.385974 GTTGAGCACGTCACATTGGC 60.386 55.000 0.00 0.00 33.71 4.52
92 93 0.817229 TTGAGCACGTCACATTGGCA 60.817 50.000 0.00 0.00 33.71 4.92
93 94 0.817229 TGAGCACGTCACATTGGCAA 60.817 50.000 0.68 0.68 0.00 4.52
94 95 0.385974 GAGCACGTCACATTGGCAAC 60.386 55.000 0.00 0.00 0.00 4.17
95 96 1.371635 GCACGTCACATTGGCAACC 60.372 57.895 0.00 0.00 0.00 3.77
96 97 2.028936 CACGTCACATTGGCAACCA 58.971 52.632 0.00 0.00 0.00 3.67
132 133 9.474920 TTGGTTCATTTTATGTTCATTGAAGAC 57.525 29.630 0.00 0.00 0.00 3.01
133 134 8.637099 TGGTTCATTTTATGTTCATTGAAGACA 58.363 29.630 0.00 0.00 0.00 3.41
134 135 9.474920 GGTTCATTTTATGTTCATTGAAGACAA 57.525 29.630 0.00 0.00 40.42 3.18
140 141 9.958234 TTTTATGTTCATTGAAGACAATTTCGA 57.042 25.926 0.00 0.00 43.17 3.71
144 145 8.284557 TGTTCATTGAAGACAATTTCGATTTG 57.715 30.769 0.00 6.98 43.17 2.32
145 146 7.381948 TGTTCATTGAAGACAATTTCGATTTGG 59.618 33.333 11.83 0.00 43.17 3.28
146 147 6.980593 TCATTGAAGACAATTTCGATTTGGT 58.019 32.000 11.83 0.00 43.17 3.67
147 148 7.432869 TCATTGAAGACAATTTCGATTTGGTT 58.567 30.769 11.83 6.08 43.17 3.67
148 149 7.381948 TCATTGAAGACAATTTCGATTTGGTTG 59.618 33.333 11.83 4.55 43.17 3.77
149 150 6.142818 TGAAGACAATTTCGATTTGGTTGT 57.857 33.333 11.83 7.16 35.87 3.32
150 151 5.976534 TGAAGACAATTTCGATTTGGTTGTG 59.023 36.000 11.83 0.00 33.55 3.33
151 152 5.766150 AGACAATTTCGATTTGGTTGTGA 57.234 34.783 11.83 0.00 33.55 3.58
152 153 6.142818 AGACAATTTCGATTTGGTTGTGAA 57.857 33.333 11.83 0.00 33.55 3.18
153 154 6.568869 AGACAATTTCGATTTGGTTGTGAAA 58.431 32.000 11.83 0.00 33.55 2.69
154 155 6.475402 AGACAATTTCGATTTGGTTGTGAAAC 59.525 34.615 11.83 0.00 33.55 2.78
155 156 6.337356 ACAATTTCGATTTGGTTGTGAAACT 58.663 32.000 11.83 0.00 38.04 2.66
156 157 7.484975 ACAATTTCGATTTGGTTGTGAAACTA 58.515 30.769 11.83 0.00 38.04 2.24
157 158 8.141268 ACAATTTCGATTTGGTTGTGAAACTAT 58.859 29.630 11.83 0.00 38.04 2.12
158 159 8.977505 CAATTTCGATTTGGTTGTGAAACTATT 58.022 29.630 0.00 0.00 38.04 1.73
159 160 9.541143 AATTTCGATTTGGTTGTGAAACTATTT 57.459 25.926 0.00 0.00 38.04 1.40
160 161 8.934507 TTTCGATTTGGTTGTGAAACTATTTT 57.065 26.923 0.00 0.00 38.04 1.82
183 184 8.801882 TTTATTAGAGACAATTTCGATTGGGT 57.198 30.769 3.94 0.00 35.93 4.51
184 185 8.801882 TTATTAGAGACAATTTCGATTGGGTT 57.198 30.769 3.94 0.00 35.93 4.11
185 186 6.494893 TTAGAGACAATTTCGATTGGGTTG 57.505 37.500 3.94 0.25 35.93 3.77
186 187 4.398319 AGAGACAATTTCGATTGGGTTGT 58.602 39.130 3.94 3.12 35.93 3.32
187 188 5.556915 AGAGACAATTTCGATTGGGTTGTA 58.443 37.500 3.94 0.00 35.93 2.41
188 189 6.001460 AGAGACAATTTCGATTGGGTTGTAA 58.999 36.000 3.94 0.00 35.93 2.41
189 190 6.488683 AGAGACAATTTCGATTGGGTTGTAAA 59.511 34.615 3.94 0.00 35.93 2.01
190 191 7.013846 AGAGACAATTTCGATTGGGTTGTAAAA 59.986 33.333 3.94 0.00 35.93 1.52
191 192 6.921307 AGACAATTTCGATTGGGTTGTAAAAC 59.079 34.615 3.94 0.00 35.93 2.43
192 193 6.811954 ACAATTTCGATTGGGTTGTAAAACT 58.188 32.000 3.94 0.00 35.93 2.66
193 194 7.942990 ACAATTTCGATTGGGTTGTAAAACTA 58.057 30.769 3.94 0.00 35.93 2.24
194 195 8.581578 ACAATTTCGATTGGGTTGTAAAACTAT 58.418 29.630 3.94 0.00 35.93 2.12
195 196 9.418045 CAATTTCGATTGGGTTGTAAAACTATT 57.582 29.630 0.00 0.00 30.93 1.73
196 197 9.990360 AATTTCGATTGGGTTGTAAAACTATTT 57.010 25.926 0.00 0.00 30.93 1.40
197 198 9.990360 ATTTCGATTGGGTTGTAAAACTATTTT 57.010 25.926 0.00 0.00 30.93 1.82
198 199 9.819267 TTTCGATTGGGTTGTAAAACTATTTTT 57.181 25.926 0.00 0.00 38.51 1.94
227 228 9.716531 TTCAAACAATTAATATTTGGACATGCA 57.283 25.926 18.25 0.00 34.70 3.96
228 229 9.716531 TCAAACAATTAATATTTGGACATGCAA 57.283 25.926 18.25 0.00 34.70 4.08
231 232 8.491331 ACAATTAATATTTGGACATGCAAACC 57.509 30.769 0.26 0.00 0.00 3.27
232 233 8.320617 ACAATTAATATTTGGACATGCAAACCT 58.679 29.630 0.26 0.00 0.00 3.50
233 234 8.605746 CAATTAATATTTGGACATGCAAACCTG 58.394 33.333 0.26 0.00 0.00 4.00
234 235 5.743636 AATATTTGGACATGCAAACCTGT 57.256 34.783 0.26 0.00 0.00 4.00
235 236 5.743636 ATATTTGGACATGCAAACCTGTT 57.256 34.783 0.26 0.00 0.00 3.16
236 237 3.902881 TTTGGACATGCAAACCTGTTT 57.097 38.095 0.00 0.00 0.00 2.83
237 238 3.902881 TTGGACATGCAAACCTGTTTT 57.097 38.095 0.00 0.00 0.00 2.43
238 239 3.176552 TGGACATGCAAACCTGTTTTG 57.823 42.857 0.00 0.00 46.57 2.44
239 240 2.762887 TGGACATGCAAACCTGTTTTGA 59.237 40.909 1.56 0.00 46.76 2.69
240 241 3.387374 TGGACATGCAAACCTGTTTTGAT 59.613 39.130 1.56 0.00 46.76 2.57
241 242 4.586421 TGGACATGCAAACCTGTTTTGATA 59.414 37.500 1.56 0.00 46.76 2.15
242 243 5.245751 TGGACATGCAAACCTGTTTTGATAT 59.754 36.000 1.56 0.00 46.76 1.63
243 244 5.577945 GGACATGCAAACCTGTTTTGATATG 59.422 40.000 1.56 7.57 46.76 1.78
244 245 6.343716 ACATGCAAACCTGTTTTGATATGA 57.656 33.333 16.28 0.00 46.76 2.15
245 246 6.757237 ACATGCAAACCTGTTTTGATATGAA 58.243 32.000 16.28 0.00 46.76 2.57
246 247 7.215789 ACATGCAAACCTGTTTTGATATGAAA 58.784 30.769 16.28 0.00 46.76 2.69
247 248 7.714377 ACATGCAAACCTGTTTTGATATGAAAA 59.286 29.630 16.28 0.00 46.76 2.29
248 249 8.723311 CATGCAAACCTGTTTTGATATGAAAAT 58.277 29.630 3.35 0.00 46.76 1.82
249 250 9.941325 ATGCAAACCTGTTTTGATATGAAAATA 57.059 25.926 3.35 0.36 46.76 1.40
250 251 9.941325 TGCAAACCTGTTTTGATATGAAAATAT 57.059 25.926 3.35 0.00 46.76 1.28
253 254 9.889128 AAACCTGTTTTGATATGAAAATATGGG 57.111 29.630 3.35 2.88 0.00 4.00
254 255 7.500141 ACCTGTTTTGATATGAAAATATGGGC 58.500 34.615 3.35 0.00 0.00 5.36
255 256 7.125507 ACCTGTTTTGATATGAAAATATGGGCA 59.874 33.333 3.35 0.00 0.00 5.36
256 257 8.152246 CCTGTTTTGATATGAAAATATGGGCAT 58.848 33.333 3.35 0.00 0.00 4.40
257 258 9.550406 CTGTTTTGATATGAAAATATGGGCATT 57.450 29.630 3.35 0.00 0.00 3.56
258 259 9.902684 TGTTTTGATATGAAAATATGGGCATTT 57.097 25.926 3.35 0.00 0.00 2.32
262 263 8.905660 TGATATGAAAATATGGGCATTTTTGG 57.094 30.769 0.00 0.00 38.04 3.28
263 264 7.444792 TGATATGAAAATATGGGCATTTTTGGC 59.555 33.333 0.00 0.00 38.04 4.52
269 270 2.046023 GGCATTTTTGGCCCTGGC 60.046 61.111 0.00 0.00 45.87 4.85
270 271 2.434709 GCATTTTTGGCCCTGGCG 60.435 61.111 0.00 0.00 43.06 5.69
271 272 2.265424 CATTTTTGGCCCTGGCGG 59.735 61.111 0.00 0.00 43.06 6.13
272 273 2.119391 ATTTTTGGCCCTGGCGGA 59.881 55.556 0.00 0.00 43.06 5.54
273 274 2.282783 ATTTTTGGCCCTGGCGGAC 61.283 57.895 0.00 0.00 42.05 4.79
278 279 4.115199 GGCCCTGGCGGACAAGAT 62.115 66.667 1.37 0.00 40.87 2.40
279 280 2.825836 GCCCTGGCGGACAAGATG 60.826 66.667 0.00 0.00 0.00 2.90
280 281 2.124570 CCCTGGCGGACAAGATGG 60.125 66.667 0.00 0.00 0.00 3.51
281 282 2.124570 CCTGGCGGACAAGATGGG 60.125 66.667 0.00 0.00 0.00 4.00
282 283 2.124570 CTGGCGGACAAGATGGGG 60.125 66.667 0.00 0.00 0.00 4.96
283 284 4.424711 TGGCGGACAAGATGGGGC 62.425 66.667 0.00 0.00 0.00 5.80
284 285 4.424711 GGCGGACAAGATGGGGCA 62.425 66.667 0.00 0.00 0.00 5.36
285 286 2.361104 GCGGACAAGATGGGGCAA 60.361 61.111 0.00 0.00 0.00 4.52
286 287 1.976474 GCGGACAAGATGGGGCAAA 60.976 57.895 0.00 0.00 0.00 3.68
287 288 1.883021 CGGACAAGATGGGGCAAAC 59.117 57.895 0.00 0.00 0.00 2.93
288 289 1.883021 GGACAAGATGGGGCAAACG 59.117 57.895 0.00 0.00 0.00 3.60
289 290 1.595093 GGACAAGATGGGGCAAACGG 61.595 60.000 0.00 0.00 0.00 4.44
290 291 0.608035 GACAAGATGGGGCAAACGGA 60.608 55.000 0.00 0.00 0.00 4.69
291 292 0.039618 ACAAGATGGGGCAAACGGAT 59.960 50.000 0.00 0.00 0.00 4.18
292 293 0.457035 CAAGATGGGGCAAACGGATG 59.543 55.000 0.00 0.00 0.00 3.51
293 294 0.039618 AAGATGGGGCAAACGGATGT 59.960 50.000 0.00 0.00 0.00 3.06
294 295 0.680921 AGATGGGGCAAACGGATGTG 60.681 55.000 0.00 0.00 0.00 3.21
295 296 1.666209 GATGGGGCAAACGGATGTGG 61.666 60.000 0.00 0.00 0.00 4.17
296 297 3.758931 GGGGCAAACGGATGTGGC 61.759 66.667 0.00 0.00 39.48 5.01
319 320 3.188786 GCTGGACGCACGACCATC 61.189 66.667 14.21 7.13 39.03 3.51
320 321 2.880879 CTGGACGCACGACCATCG 60.881 66.667 14.21 1.00 46.93 3.84
323 324 3.838795 GACGCACGACCATCGCAC 61.839 66.667 0.00 0.00 45.12 5.34
327 328 4.386951 CACGACCATCGCACCCCA 62.387 66.667 0.00 0.00 45.12 4.96
328 329 4.082523 ACGACCATCGCACCCCAG 62.083 66.667 0.00 0.00 45.12 4.45
329 330 4.838152 CGACCATCGCACCCCAGG 62.838 72.222 0.00 0.00 31.14 4.45
330 331 3.399181 GACCATCGCACCCCAGGA 61.399 66.667 0.00 0.00 0.00 3.86
331 332 3.682292 GACCATCGCACCCCAGGAC 62.682 68.421 0.00 0.00 0.00 3.85
332 333 3.716195 CCATCGCACCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
333 334 2.124983 CATCGCACCCCAGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
334 335 3.402681 ATCGCACCCCAGGACAGG 61.403 66.667 0.00 0.00 0.00 4.00
343 344 4.394712 CAGGACAGGCCCGGACAC 62.395 72.222 0.73 0.00 37.37 3.67
344 345 4.954118 AGGACAGGCCCGGACACA 62.954 66.667 0.73 0.00 37.37 3.72
345 346 3.948719 GGACAGGCCCGGACACAA 61.949 66.667 0.73 0.00 0.00 3.33
346 347 2.668550 GACAGGCCCGGACACAAC 60.669 66.667 0.73 0.00 0.00 3.32
347 348 3.168528 ACAGGCCCGGACACAACT 61.169 61.111 0.73 0.00 0.00 3.16
348 349 2.358737 CAGGCCCGGACACAACTC 60.359 66.667 0.73 0.00 0.00 3.01
349 350 3.637273 AGGCCCGGACACAACTCC 61.637 66.667 0.73 0.00 0.00 3.85
350 351 3.948719 GGCCCGGACACAACTCCA 61.949 66.667 0.73 0.00 0.00 3.86
351 352 2.351276 GCCCGGACACAACTCCAT 59.649 61.111 0.73 0.00 0.00 3.41
352 353 1.303317 GCCCGGACACAACTCCATT 60.303 57.895 0.73 0.00 0.00 3.16
353 354 1.586154 GCCCGGACACAACTCCATTG 61.586 60.000 0.73 0.00 44.60 2.82
354 355 1.586154 CCCGGACACAACTCCATTGC 61.586 60.000 0.73 0.00 42.62 3.56
355 356 1.586154 CCGGACACAACTCCATTGCC 61.586 60.000 0.00 0.00 42.62 4.52
356 357 1.586154 CGGACACAACTCCATTGCCC 61.586 60.000 0.00 0.00 42.62 5.36
357 358 0.251341 GGACACAACTCCATTGCCCT 60.251 55.000 0.00 0.00 42.62 5.19
358 359 0.883833 GACACAACTCCATTGCCCTG 59.116 55.000 0.00 0.00 42.62 4.45
359 360 1.181098 ACACAACTCCATTGCCCTGC 61.181 55.000 0.00 0.00 42.62 4.85
360 361 0.896940 CACAACTCCATTGCCCTGCT 60.897 55.000 0.00 0.00 42.62 4.24
361 362 0.610232 ACAACTCCATTGCCCTGCTC 60.610 55.000 0.00 0.00 42.62 4.26
362 363 0.609957 CAACTCCATTGCCCTGCTCA 60.610 55.000 0.00 0.00 0.00 4.26
363 364 0.112995 AACTCCATTGCCCTGCTCAA 59.887 50.000 0.00 0.00 0.00 3.02
364 365 0.112995 ACTCCATTGCCCTGCTCAAA 59.887 50.000 0.00 0.00 0.00 2.69
365 366 0.529378 CTCCATTGCCCTGCTCAAAC 59.471 55.000 0.00 0.00 0.00 2.93
366 367 0.178967 TCCATTGCCCTGCTCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
367 368 0.245539 CCATTGCCCTGCTCAAACAG 59.754 55.000 0.00 0.00 37.42 3.16
368 369 1.250328 CATTGCCCTGCTCAAACAGA 58.750 50.000 0.00 0.00 40.25 3.41
369 370 1.068055 CATTGCCCTGCTCAAACAGAC 60.068 52.381 0.00 0.00 40.25 3.51
370 371 0.106769 TTGCCCTGCTCAAACAGACA 60.107 50.000 0.00 0.00 40.25 3.41
371 372 0.535780 TGCCCTGCTCAAACAGACAG 60.536 55.000 0.00 0.00 40.25 3.51
372 373 0.250467 GCCCTGCTCAAACAGACAGA 60.250 55.000 0.00 0.00 40.25 3.41
373 374 1.815408 GCCCTGCTCAAACAGACAGAA 60.815 52.381 0.00 0.00 40.25 3.02
374 375 2.787994 CCCTGCTCAAACAGACAGAAT 58.212 47.619 0.00 0.00 40.25 2.40
375 376 2.746362 CCCTGCTCAAACAGACAGAATC 59.254 50.000 0.00 0.00 40.25 2.52
376 377 2.746362 CCTGCTCAAACAGACAGAATCC 59.254 50.000 0.00 0.00 40.25 3.01
377 378 2.414481 CTGCTCAAACAGACAGAATCCG 59.586 50.000 0.00 0.00 40.25 4.18
378 379 1.734465 GCTCAAACAGACAGAATCCGG 59.266 52.381 0.00 0.00 0.00 5.14
379 380 2.350522 CTCAAACAGACAGAATCCGGG 58.649 52.381 0.00 0.00 0.00 5.73
380 381 0.804989 CAAACAGACAGAATCCGGGC 59.195 55.000 0.00 0.00 0.00 6.13
381 382 0.400213 AAACAGACAGAATCCGGGCA 59.600 50.000 0.00 0.00 0.00 5.36
382 383 0.400213 AACAGACAGAATCCGGGCAA 59.600 50.000 0.00 0.00 0.00 4.52
383 384 0.400213 ACAGACAGAATCCGGGCAAA 59.600 50.000 0.00 0.00 0.00 3.68
384 385 1.202879 ACAGACAGAATCCGGGCAAAA 60.203 47.619 0.00 0.00 0.00 2.44
385 386 1.200020 CAGACAGAATCCGGGCAAAAC 59.800 52.381 0.00 0.00 0.00 2.43
386 387 0.168128 GACAGAATCCGGGCAAAACG 59.832 55.000 0.00 0.00 0.00 3.60
393 394 4.693525 CGGGCAAAACGGGCGTTC 62.694 66.667 0.00 0.00 37.35 3.95
417 418 3.532155 GGCGTGTTTGGTTGCCCA 61.532 61.111 0.00 0.00 41.70 5.36
420 421 1.739049 CGTGTTTGGTTGCCCACAT 59.261 52.632 0.00 0.00 41.67 3.21
490 491 2.199652 TTTTCCTGTTGGGCCTGCG 61.200 57.895 4.53 0.00 34.39 5.18
561 562 2.320587 CGGCAGTTTCTCGCAAGCT 61.321 57.895 0.00 0.00 37.18 3.74
688 689 0.318441 CCTCCTTTCACTCGCTCACA 59.682 55.000 0.00 0.00 0.00 3.58
702 704 0.251354 CTCACACATAGCCACTGCCT 59.749 55.000 0.00 0.00 38.69 4.75
703 705 0.692476 TCACACATAGCCACTGCCTT 59.308 50.000 0.00 0.00 38.69 4.35
721 723 2.305927 CCTTCCTTTCTTCCCTACTGCA 59.694 50.000 0.00 0.00 0.00 4.41
728 730 2.481441 TCTTCCCTACTGCATCACCAT 58.519 47.619 0.00 0.00 0.00 3.55
752 754 1.806247 CGGTGGCTGCGATTTCAGATA 60.806 52.381 0.00 0.00 36.19 1.98
754 756 3.664107 GGTGGCTGCGATTTCAGATATA 58.336 45.455 0.00 0.00 36.19 0.86
826 828 1.566298 GGATCTGGTGCTCCCCTTGT 61.566 60.000 1.59 0.00 0.00 3.16
833 835 0.755327 GTGCTCCCCTTGTTGTTGGT 60.755 55.000 0.00 0.00 0.00 3.67
852 854 2.693591 GGTCATCATCTGGTCGACCTAA 59.306 50.000 33.39 21.95 42.37 2.69
856 858 5.473846 GTCATCATCTGGTCGACCTAATCTA 59.526 44.000 33.39 15.89 36.82 1.98
896 898 1.152652 ATCCTCGTCTCCGATGCCT 60.153 57.895 0.00 0.00 43.27 4.75
990 992 3.691118 CCACTGAATGAACCATCGATGTT 59.309 43.478 23.27 16.75 0.00 2.71
1143 1145 0.601057 CATTGTTTCCCCGGGAACAC 59.399 55.000 26.32 18.39 41.87 3.32
1175 1177 8.954950 ATCCAAAATCTGAACTACATCTACAG 57.045 34.615 0.00 0.00 0.00 2.74
1248 1250 0.035458 CCAGGCTTGTCGAGACCTTT 59.965 55.000 0.34 0.00 31.76 3.11
1249 1251 1.151668 CAGGCTTGTCGAGACCTTTG 58.848 55.000 0.34 0.00 31.76 2.77
1291 1294 3.261643 AGATAGCATCAACACCAGTGTCA 59.738 43.478 3.49 0.00 44.13 3.58
1308 1311 2.224744 TGTCAAAGAGCAAGTGGCCATA 60.225 45.455 9.72 0.00 46.50 2.74
1377 1380 4.836825 ACACGTTCAGAAGATCAATGGAT 58.163 39.130 0.00 0.00 36.13 3.41
1475 1480 1.630369 CCAGACTCCACCCAAGATTCA 59.370 52.381 0.00 0.00 0.00 2.57
1594 1603 3.019564 GCTAGTGATGCCATTTTCAGGT 58.980 45.455 0.00 0.00 0.00 4.00
1720 1730 4.261322 GCTGCTGTTGACTTTGATCTGAAA 60.261 41.667 0.00 0.00 0.00 2.69
1779 1789 4.421058 CATGATGCAAACATTCTCACTGG 58.579 43.478 6.96 0.00 36.35 4.00
1780 1790 3.489355 TGATGCAAACATTCTCACTGGT 58.511 40.909 0.00 0.00 36.35 4.00
1802 1812 0.531532 CATGAGTCGACCTGATGGGC 60.532 60.000 13.01 0.00 39.10 5.36
1858 1868 2.111878 GGCTATGCATGTCGGCCT 59.888 61.111 20.04 0.00 39.68 5.19
1935 1945 2.673368 GGAACTTTCCTATGACTGCACG 59.327 50.000 0.34 0.00 44.11 5.34
2070 2080 5.511545 CCACTCAGGTTAAGCTAGTTCTTGT 60.512 44.000 6.90 0.00 0.00 3.16
2072 2082 6.146347 CACTCAGGTTAAGCTAGTTCTTGTTC 59.854 42.308 6.90 0.00 0.00 3.18
2208 2218 2.549754 ACAATGACGCTTGGAAGAACAG 59.450 45.455 0.00 0.00 0.00 3.16
2216 2226 3.214328 GCTTGGAAGAACAGAAGGTTGA 58.786 45.455 0.00 0.00 40.63 3.18
2230 2240 2.032528 TTGAAGTGGGCAGAGGCG 59.967 61.111 0.00 0.00 42.47 5.52
2268 2278 3.817647 AGTCAGTGCAGGATTTGAAGAAC 59.182 43.478 0.00 0.00 0.00 3.01
2273 2283 3.190118 GTGCAGGATTTGAAGAACAGGAG 59.810 47.826 0.00 0.00 0.00 3.69
2274 2284 3.072915 TGCAGGATTTGAAGAACAGGAGA 59.927 43.478 0.00 0.00 0.00 3.71
2275 2285 4.074970 GCAGGATTTGAAGAACAGGAGAA 58.925 43.478 0.00 0.00 0.00 2.87
2281 2291 3.409026 TGAAGAACAGGAGAAGGAAGC 57.591 47.619 0.00 0.00 0.00 3.86
2301 2311 2.916052 GCAGCAGCAGCAGAAGCAA 61.916 57.895 4.63 0.00 45.49 3.91
2318 2328 5.762711 AGAAGCAAAGAAGAAGAGGAAGAAC 59.237 40.000 0.00 0.00 0.00 3.01
2327 2346 2.645838 AGAGGAAGAACAAGCAGCAA 57.354 45.000 0.00 0.00 0.00 3.91
2360 2388 5.243981 CAGAAGAAGAGGAAGATGAAGCAA 58.756 41.667 0.00 0.00 0.00 3.91
2370 2398 2.571212 AGATGAAGCAACAACACCGAA 58.429 42.857 0.00 0.00 0.00 4.30
2482 2511 6.883744 TGGCACTATGTTCAGATTATGTGTA 58.116 36.000 0.00 0.00 0.00 2.90
2502 2531 6.777091 TGTGTAGTAAGGTCACCACTAGTTAA 59.223 38.462 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.399301 CACGATGAAATTGGACAAACTGTTC 59.601 40.000 0.00 0.00 29.54 3.18
4 5 5.067153 TCACGATGAAATTGGACAAACTGTT 59.933 36.000 0.00 0.00 29.54 3.16
5 6 4.578516 TCACGATGAAATTGGACAAACTGT 59.421 37.500 0.00 0.00 29.54 3.55
6 7 5.107109 TCACGATGAAATTGGACAAACTG 57.893 39.130 0.00 0.00 29.54 3.16
7 8 4.320494 GCTCACGATGAAATTGGACAAACT 60.320 41.667 0.00 0.00 29.54 2.66
8 9 3.914364 GCTCACGATGAAATTGGACAAAC 59.086 43.478 0.00 0.00 29.54 2.93
9 10 3.820467 AGCTCACGATGAAATTGGACAAA 59.180 39.130 0.00 0.00 29.54 2.83
10 11 3.189080 CAGCTCACGATGAAATTGGACAA 59.811 43.478 0.00 0.00 29.54 3.18
11 12 2.743664 CAGCTCACGATGAAATTGGACA 59.256 45.455 0.00 0.00 29.54 4.02
12 13 2.476854 GCAGCTCACGATGAAATTGGAC 60.477 50.000 0.00 0.00 29.54 4.02
13 14 1.739466 GCAGCTCACGATGAAATTGGA 59.261 47.619 0.00 0.00 29.54 3.53
14 15 1.469703 TGCAGCTCACGATGAAATTGG 59.530 47.619 0.00 0.00 29.54 3.16
15 16 2.905959 TGCAGCTCACGATGAAATTG 57.094 45.000 0.00 0.00 0.00 2.32
16 17 3.011818 TCATGCAGCTCACGATGAAATT 58.988 40.909 0.00 0.00 0.00 1.82
17 18 2.635714 TCATGCAGCTCACGATGAAAT 58.364 42.857 0.00 0.00 0.00 2.17
18 19 2.097680 TCATGCAGCTCACGATGAAA 57.902 45.000 0.00 0.00 0.00 2.69
19 20 2.320745 ATCATGCAGCTCACGATGAA 57.679 45.000 0.00 0.00 0.00 2.57
20 21 1.937899 CAATCATGCAGCTCACGATGA 59.062 47.619 0.00 0.00 26.70 2.92
21 22 1.002792 CCAATCATGCAGCTCACGATG 60.003 52.381 0.00 0.00 26.70 3.84
22 23 1.306148 CCAATCATGCAGCTCACGAT 58.694 50.000 0.00 0.00 0.00 3.73
23 24 1.371337 GCCAATCATGCAGCTCACGA 61.371 55.000 0.00 0.00 0.00 4.35
24 25 1.063649 GCCAATCATGCAGCTCACG 59.936 57.895 0.00 0.00 0.00 4.35
25 26 0.179145 GTGCCAATCATGCAGCTCAC 60.179 55.000 0.00 0.00 39.87 3.51
26 27 0.609681 TGTGCCAATCATGCAGCTCA 60.610 50.000 0.00 0.00 39.87 4.26
27 28 0.179145 GTGTGCCAATCATGCAGCTC 60.179 55.000 0.00 0.00 39.87 4.09
28 29 0.611062 AGTGTGCCAATCATGCAGCT 60.611 50.000 0.00 0.00 39.87 4.24
29 30 0.179145 GAGTGTGCCAATCATGCAGC 60.179 55.000 0.00 0.00 39.87 5.25
30 31 1.170442 TGAGTGTGCCAATCATGCAG 58.830 50.000 0.00 0.00 39.87 4.41
31 32 1.842052 ATGAGTGTGCCAATCATGCA 58.158 45.000 14.54 0.00 45.40 3.96
32 33 2.927477 CAAATGAGTGTGCCAATCATGC 59.073 45.455 15.57 0.00 46.21 4.06
33 34 3.193903 TCCAAATGAGTGTGCCAATCATG 59.806 43.478 15.57 8.34 46.21 3.07
35 36 2.874014 TCCAAATGAGTGTGCCAATCA 58.126 42.857 7.59 7.59 42.48 2.57
36 37 3.698040 AGATCCAAATGAGTGTGCCAATC 59.302 43.478 0.00 0.00 0.00 2.67
37 38 3.705051 AGATCCAAATGAGTGTGCCAAT 58.295 40.909 0.00 0.00 0.00 3.16
38 39 3.159213 AGATCCAAATGAGTGTGCCAA 57.841 42.857 0.00 0.00 0.00 4.52
39 40 2.885135 AGATCCAAATGAGTGTGCCA 57.115 45.000 0.00 0.00 0.00 4.92
40 41 3.084039 TGAAGATCCAAATGAGTGTGCC 58.916 45.455 0.00 0.00 0.00 5.01
41 42 4.771590 TTGAAGATCCAAATGAGTGTGC 57.228 40.909 0.00 0.00 0.00 4.57
42 43 7.327761 GTCATTTTGAAGATCCAAATGAGTGTG 59.672 37.037 15.70 0.00 36.12 3.82
43 44 7.232127 AGTCATTTTGAAGATCCAAATGAGTGT 59.768 33.333 18.74 7.77 36.12 3.55
44 45 7.600065 AGTCATTTTGAAGATCCAAATGAGTG 58.400 34.615 18.74 8.60 36.12 3.51
45 46 7.771927 AGTCATTTTGAAGATCCAAATGAGT 57.228 32.000 15.70 15.78 36.12 3.41
46 47 7.544566 CCAAGTCATTTTGAAGATCCAAATGAG 59.455 37.037 15.70 7.99 36.12 2.90
47 48 7.015487 ACCAAGTCATTTTGAAGATCCAAATGA 59.985 33.333 12.79 12.79 36.12 2.57
48 49 7.156673 ACCAAGTCATTTTGAAGATCCAAATG 58.843 34.615 9.44 9.44 36.12 2.32
49 50 7.307131 ACCAAGTCATTTTGAAGATCCAAAT 57.693 32.000 0.00 0.00 36.12 2.32
50 51 6.729690 ACCAAGTCATTTTGAAGATCCAAA 57.270 33.333 0.00 0.00 34.56 3.28
51 52 6.323482 TCAACCAAGTCATTTTGAAGATCCAA 59.677 34.615 0.00 0.00 0.00 3.53
52 53 5.832595 TCAACCAAGTCATTTTGAAGATCCA 59.167 36.000 0.00 0.00 0.00 3.41
53 54 6.331369 TCAACCAAGTCATTTTGAAGATCC 57.669 37.500 0.00 0.00 0.00 3.36
54 55 5.860716 GCTCAACCAAGTCATTTTGAAGATC 59.139 40.000 0.00 0.00 0.00 2.75
55 56 5.302568 TGCTCAACCAAGTCATTTTGAAGAT 59.697 36.000 0.00 0.00 0.00 2.40
56 57 4.644234 TGCTCAACCAAGTCATTTTGAAGA 59.356 37.500 0.00 0.00 0.00 2.87
57 58 4.741676 GTGCTCAACCAAGTCATTTTGAAG 59.258 41.667 0.00 0.00 0.00 3.02
58 59 4.681744 GTGCTCAACCAAGTCATTTTGAA 58.318 39.130 0.00 0.00 0.00 2.69
59 60 3.243035 CGTGCTCAACCAAGTCATTTTGA 60.243 43.478 0.00 0.00 0.00 2.69
60 61 3.044986 CGTGCTCAACCAAGTCATTTTG 58.955 45.455 0.00 0.00 0.00 2.44
61 62 2.687935 ACGTGCTCAACCAAGTCATTTT 59.312 40.909 0.00 0.00 0.00 1.82
62 63 2.290641 GACGTGCTCAACCAAGTCATTT 59.709 45.455 0.00 0.00 41.71 2.32
63 64 1.873591 GACGTGCTCAACCAAGTCATT 59.126 47.619 0.00 0.00 41.71 2.57
64 65 1.202639 TGACGTGCTCAACCAAGTCAT 60.203 47.619 0.00 0.00 44.99 3.06
65 66 0.176910 TGACGTGCTCAACCAAGTCA 59.823 50.000 0.00 6.79 46.68 3.41
66 67 0.582005 GTGACGTGCTCAACCAAGTC 59.418 55.000 0.00 2.11 42.20 3.01
67 68 0.107897 TGTGACGTGCTCAACCAAGT 60.108 50.000 0.00 0.00 0.00 3.16
68 69 1.229428 ATGTGACGTGCTCAACCAAG 58.771 50.000 0.00 0.00 0.00 3.61
69 70 1.333308 CAATGTGACGTGCTCAACCAA 59.667 47.619 0.00 0.00 0.00 3.67
70 71 0.943673 CAATGTGACGTGCTCAACCA 59.056 50.000 0.00 0.00 0.00 3.67
71 72 0.238289 CCAATGTGACGTGCTCAACC 59.762 55.000 0.00 0.00 0.00 3.77
72 73 0.385974 GCCAATGTGACGTGCTCAAC 60.386 55.000 0.00 0.00 0.00 3.18
73 74 0.817229 TGCCAATGTGACGTGCTCAA 60.817 50.000 0.00 0.00 0.00 3.02
74 75 0.817229 TTGCCAATGTGACGTGCTCA 60.817 50.000 0.00 0.00 0.00 4.26
75 76 0.385974 GTTGCCAATGTGACGTGCTC 60.386 55.000 0.00 0.00 0.00 4.26
76 77 1.654220 GTTGCCAATGTGACGTGCT 59.346 52.632 0.00 0.00 0.00 4.40
77 78 1.371635 GGTTGCCAATGTGACGTGC 60.372 57.895 0.00 0.00 0.00 5.34
78 79 0.383590 TTGGTTGCCAATGTGACGTG 59.616 50.000 0.00 0.00 38.75 4.49
79 80 2.800516 TTGGTTGCCAATGTGACGT 58.199 47.368 0.00 0.00 38.75 4.34
106 107 9.474920 GTCTTCAATGAACATAAAATGAACCAA 57.525 29.630 0.00 0.00 0.00 3.67
107 108 8.637099 TGTCTTCAATGAACATAAAATGAACCA 58.363 29.630 0.00 0.00 0.00 3.67
108 109 9.474920 TTGTCTTCAATGAACATAAAATGAACC 57.525 29.630 0.00 0.00 0.00 3.62
114 115 9.958234 TCGAAATTGTCTTCAATGAACATAAAA 57.042 25.926 0.00 0.00 42.60 1.52
118 119 8.918658 CAAATCGAAATTGTCTTCAATGAACAT 58.081 29.630 6.23 0.00 42.60 2.71
119 120 7.381948 CCAAATCGAAATTGTCTTCAATGAACA 59.618 33.333 11.83 0.00 42.60 3.18
120 121 7.382218 ACCAAATCGAAATTGTCTTCAATGAAC 59.618 33.333 11.83 0.00 42.60 3.18
121 122 7.432869 ACCAAATCGAAATTGTCTTCAATGAA 58.567 30.769 11.83 0.00 42.60 2.57
122 123 6.980593 ACCAAATCGAAATTGTCTTCAATGA 58.019 32.000 11.83 0.00 42.60 2.57
123 124 7.169645 ACAACCAAATCGAAATTGTCTTCAATG 59.830 33.333 11.83 4.67 42.60 2.82
124 125 7.169645 CACAACCAAATCGAAATTGTCTTCAAT 59.830 33.333 11.83 0.00 44.94 2.57
125 126 6.475076 CACAACCAAATCGAAATTGTCTTCAA 59.525 34.615 11.83 0.00 37.98 2.69
126 127 5.976534 CACAACCAAATCGAAATTGTCTTCA 59.023 36.000 11.83 0.00 31.25 3.02
127 128 6.205784 TCACAACCAAATCGAAATTGTCTTC 58.794 36.000 11.83 0.00 31.25 2.87
128 129 6.142818 TCACAACCAAATCGAAATTGTCTT 57.857 33.333 11.83 2.61 31.25 3.01
129 130 5.766150 TCACAACCAAATCGAAATTGTCT 57.234 34.783 11.83 0.00 31.25 3.41
130 131 6.475402 AGTTTCACAACCAAATCGAAATTGTC 59.525 34.615 11.83 0.00 31.25 3.18
131 132 6.337356 AGTTTCACAACCAAATCGAAATTGT 58.663 32.000 11.83 5.71 33.86 2.71
132 133 6.826893 AGTTTCACAACCAAATCGAAATTG 57.173 33.333 7.20 7.20 32.70 2.32
133 134 9.541143 AAATAGTTTCACAACCAAATCGAAATT 57.459 25.926 0.00 0.00 32.70 1.82
134 135 9.541143 AAAATAGTTTCACAACCAAATCGAAAT 57.459 25.926 0.00 0.00 32.70 2.17
135 136 8.934507 AAAATAGTTTCACAACCAAATCGAAA 57.065 26.923 0.00 0.00 32.70 3.46
157 158 9.238368 ACCCAATCGAAATTGTCTCTAATAAAA 57.762 29.630 0.00 0.00 40.63 1.52
158 159 8.801882 ACCCAATCGAAATTGTCTCTAATAAA 57.198 30.769 0.00 0.00 40.63 1.40
159 160 8.673711 CAACCCAATCGAAATTGTCTCTAATAA 58.326 33.333 0.00 0.00 40.63 1.40
160 161 7.827236 ACAACCCAATCGAAATTGTCTCTAATA 59.173 33.333 0.00 0.00 40.63 0.98
161 162 6.659242 ACAACCCAATCGAAATTGTCTCTAAT 59.341 34.615 0.00 0.00 40.63 1.73
162 163 6.001460 ACAACCCAATCGAAATTGTCTCTAA 58.999 36.000 0.00 0.00 40.63 2.10
163 164 5.556915 ACAACCCAATCGAAATTGTCTCTA 58.443 37.500 0.00 0.00 40.63 2.43
164 165 4.398319 ACAACCCAATCGAAATTGTCTCT 58.602 39.130 0.00 0.00 40.63 3.10
165 166 4.766404 ACAACCCAATCGAAATTGTCTC 57.234 40.909 0.00 0.00 40.63 3.36
166 167 6.642707 TTTACAACCCAATCGAAATTGTCT 57.357 33.333 0.00 0.00 40.63 3.41
167 168 6.921307 AGTTTTACAACCCAATCGAAATTGTC 59.079 34.615 0.00 0.00 40.63 3.18
168 169 6.811954 AGTTTTACAACCCAATCGAAATTGT 58.188 32.000 0.00 0.00 40.63 2.71
169 170 8.980143 ATAGTTTTACAACCCAATCGAAATTG 57.020 30.769 0.00 0.00 41.69 2.32
170 171 9.990360 AAATAGTTTTACAACCCAATCGAAATT 57.010 25.926 0.00 0.00 32.70 1.82
171 172 9.990360 AAAATAGTTTTACAACCCAATCGAAAT 57.010 25.926 0.00 0.00 32.70 2.17
172 173 9.819267 AAAAATAGTTTTACAACCCAATCGAAA 57.181 25.926 0.00 0.00 35.12 3.46
201 202 9.716531 TGCATGTCCAAATATTAATTGTTTGAA 57.283 25.926 19.52 4.87 35.43 2.69
202 203 9.716531 TTGCATGTCCAAATATTAATTGTTTGA 57.283 25.926 19.52 7.47 35.43 2.69
205 206 8.945057 GGTTTGCATGTCCAAATATTAATTGTT 58.055 29.630 0.00 0.00 37.09 2.83
206 207 8.320617 AGGTTTGCATGTCCAAATATTAATTGT 58.679 29.630 0.00 0.00 37.09 2.71
207 208 8.605746 CAGGTTTGCATGTCCAAATATTAATTG 58.394 33.333 0.00 0.00 37.09 2.32
208 209 8.320617 ACAGGTTTGCATGTCCAAATATTAATT 58.679 29.630 0.00 0.00 34.13 1.40
209 210 7.850193 ACAGGTTTGCATGTCCAAATATTAAT 58.150 30.769 2.42 0.00 34.13 1.40
210 211 7.238486 ACAGGTTTGCATGTCCAAATATTAA 57.762 32.000 2.42 0.00 34.13 1.40
211 212 6.849085 ACAGGTTTGCATGTCCAAATATTA 57.151 33.333 2.42 0.00 34.13 0.98
212 213 5.743636 ACAGGTTTGCATGTCCAAATATT 57.256 34.783 2.42 0.00 34.13 1.28
213 214 5.743636 AACAGGTTTGCATGTCCAAATAT 57.256 34.783 2.42 0.00 38.83 1.28
214 215 5.543507 AAACAGGTTTGCATGTCCAAATA 57.456 34.783 0.00 0.00 38.83 1.40
215 216 4.420522 AAACAGGTTTGCATGTCCAAAT 57.579 36.364 0.00 0.00 38.83 2.32
216 217 3.902881 AAACAGGTTTGCATGTCCAAA 57.097 38.095 0.00 0.00 38.83 3.28
217 218 3.196469 TCAAAACAGGTTTGCATGTCCAA 59.804 39.130 6.00 0.00 45.38 3.53
218 219 2.762887 TCAAAACAGGTTTGCATGTCCA 59.237 40.909 6.00 0.00 45.38 4.02
219 220 3.451141 TCAAAACAGGTTTGCATGTCC 57.549 42.857 6.00 0.00 45.38 4.02
220 221 6.389091 TCATATCAAAACAGGTTTGCATGTC 58.611 36.000 17.94 0.00 45.38 3.06
221 222 6.343716 TCATATCAAAACAGGTTTGCATGT 57.656 33.333 17.94 6.21 45.38 3.21
222 223 7.655236 TTTCATATCAAAACAGGTTTGCATG 57.345 32.000 6.00 11.45 45.38 4.06
223 224 8.851541 ATTTTCATATCAAAACAGGTTTGCAT 57.148 26.923 6.00 3.98 45.38 3.96
224 225 9.941325 ATATTTTCATATCAAAACAGGTTTGCA 57.059 25.926 6.00 0.00 45.38 4.08
227 228 9.889128 CCCATATTTTCATATCAAAACAGGTTT 57.111 29.630 0.00 0.00 0.00 3.27
228 229 7.986889 GCCCATATTTTCATATCAAAACAGGTT 59.013 33.333 0.00 0.00 0.00 3.50
229 230 7.125507 TGCCCATATTTTCATATCAAAACAGGT 59.874 33.333 0.00 0.00 0.00 4.00
230 231 7.499292 TGCCCATATTTTCATATCAAAACAGG 58.501 34.615 0.00 0.00 0.00 4.00
231 232 9.550406 AATGCCCATATTTTCATATCAAAACAG 57.450 29.630 0.00 0.00 0.00 3.16
232 233 9.902684 AAATGCCCATATTTTCATATCAAAACA 57.097 25.926 0.00 0.00 0.00 2.83
236 237 9.339850 CCAAAAATGCCCATATTTTCATATCAA 57.660 29.630 0.00 0.00 38.83 2.57
237 238 7.444792 GCCAAAAATGCCCATATTTTCATATCA 59.555 33.333 0.00 0.00 38.83 2.15
238 239 7.094677 GGCCAAAAATGCCCATATTTTCATATC 60.095 37.037 0.00 0.00 43.33 1.63
239 240 6.716173 GGCCAAAAATGCCCATATTTTCATAT 59.284 34.615 0.00 0.00 43.33 1.78
240 241 6.060788 GGCCAAAAATGCCCATATTTTCATA 58.939 36.000 0.00 0.00 43.33 2.15
241 242 4.888823 GGCCAAAAATGCCCATATTTTCAT 59.111 37.500 0.00 0.00 43.33 2.57
242 243 4.268359 GGCCAAAAATGCCCATATTTTCA 58.732 39.130 0.00 0.00 43.33 2.69
243 244 4.898829 GGCCAAAAATGCCCATATTTTC 57.101 40.909 0.00 0.00 43.33 2.29
253 254 2.434709 CGCCAGGGCCAAAAATGC 60.435 61.111 6.18 0.00 37.98 3.56
254 255 2.265424 CCGCCAGGGCCAAAAATG 59.735 61.111 6.18 0.00 37.98 2.32
255 256 2.119391 TCCGCCAGGGCCAAAAAT 59.881 55.556 6.18 0.00 38.33 1.82
256 257 2.915137 GTCCGCCAGGGCCAAAAA 60.915 61.111 6.18 0.00 35.69 1.94
257 258 3.740495 TTGTCCGCCAGGGCCAAAA 62.740 57.895 6.18 0.00 42.85 2.44
258 259 4.211330 TTGTCCGCCAGGGCCAAA 62.211 61.111 6.18 0.00 42.85 3.28
259 260 4.659172 CTTGTCCGCCAGGGCCAA 62.659 66.667 6.18 2.70 42.85 4.52
261 262 4.115199 ATCTTGTCCGCCAGGGCC 62.115 66.667 4.42 0.00 42.85 5.80
262 263 2.825836 CATCTTGTCCGCCAGGGC 60.826 66.667 0.00 0.00 44.08 5.19
263 264 2.124570 CCATCTTGTCCGCCAGGG 60.125 66.667 0.00 0.00 38.33 4.45
264 265 2.124570 CCCATCTTGTCCGCCAGG 60.125 66.667 0.00 0.00 39.46 4.45
265 266 2.124570 CCCCATCTTGTCCGCCAG 60.125 66.667 0.00 0.00 0.00 4.85
266 267 4.424711 GCCCCATCTTGTCCGCCA 62.425 66.667 0.00 0.00 0.00 5.69
267 268 3.936772 TTGCCCCATCTTGTCCGCC 62.937 63.158 0.00 0.00 0.00 6.13
268 269 1.976474 TTTGCCCCATCTTGTCCGC 60.976 57.895 0.00 0.00 0.00 5.54
269 270 1.883021 GTTTGCCCCATCTTGTCCG 59.117 57.895 0.00 0.00 0.00 4.79
270 271 1.595093 CCGTTTGCCCCATCTTGTCC 61.595 60.000 0.00 0.00 0.00 4.02
271 272 0.608035 TCCGTTTGCCCCATCTTGTC 60.608 55.000 0.00 0.00 0.00 3.18
272 273 0.039618 ATCCGTTTGCCCCATCTTGT 59.960 50.000 0.00 0.00 0.00 3.16
273 274 0.457035 CATCCGTTTGCCCCATCTTG 59.543 55.000 0.00 0.00 0.00 3.02
274 275 0.039618 ACATCCGTTTGCCCCATCTT 59.960 50.000 0.00 0.00 0.00 2.40
275 276 0.680921 CACATCCGTTTGCCCCATCT 60.681 55.000 0.00 0.00 0.00 2.90
276 277 1.666209 CCACATCCGTTTGCCCCATC 61.666 60.000 0.00 0.00 0.00 3.51
277 278 1.682005 CCACATCCGTTTGCCCCAT 60.682 57.895 0.00 0.00 0.00 4.00
278 279 2.282816 CCACATCCGTTTGCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
279 280 3.758931 GCCACATCCGTTTGCCCC 61.759 66.667 0.00 0.00 0.00 5.80
280 281 3.758931 GGCCACATCCGTTTGCCC 61.759 66.667 0.00 0.00 35.36 5.36
281 282 4.114997 CGGCCACATCCGTTTGCC 62.115 66.667 2.24 0.00 44.18 4.52
303 304 2.880879 CGATGGTCGTGCGTCCAG 60.881 66.667 14.76 0.83 36.82 3.86
306 307 3.838795 GTGCGATGGTCGTGCGTC 61.839 66.667 1.11 0.00 42.81 5.19
310 311 4.386951 TGGGGTGCGATGGTCGTG 62.387 66.667 1.11 0.00 42.81 4.35
311 312 4.082523 CTGGGGTGCGATGGTCGT 62.083 66.667 1.11 0.00 42.81 4.34
312 313 4.838152 CCTGGGGTGCGATGGTCG 62.838 72.222 0.00 0.00 43.89 4.79
313 314 3.399181 TCCTGGGGTGCGATGGTC 61.399 66.667 0.00 0.00 0.00 4.02
314 315 3.717294 GTCCTGGGGTGCGATGGT 61.717 66.667 0.00 0.00 0.00 3.55
315 316 3.687321 CTGTCCTGGGGTGCGATGG 62.687 68.421 0.00 0.00 0.00 3.51
316 317 2.124983 CTGTCCTGGGGTGCGATG 60.125 66.667 0.00 0.00 0.00 3.84
317 318 3.402681 CCTGTCCTGGGGTGCGAT 61.403 66.667 0.00 0.00 0.00 4.58
326 327 4.394712 GTGTCCGGGCCTGTCCTG 62.395 72.222 11.58 0.00 41.11 3.86
327 328 4.954118 TGTGTCCGGGCCTGTCCT 62.954 66.667 11.58 0.00 34.39 3.85
328 329 3.948719 TTGTGTCCGGGCCTGTCC 61.949 66.667 11.58 0.26 0.00 4.02
329 330 2.668550 GTTGTGTCCGGGCCTGTC 60.669 66.667 11.58 3.86 0.00 3.51
330 331 3.168528 AGTTGTGTCCGGGCCTGT 61.169 61.111 11.58 0.00 0.00 4.00
331 332 2.358737 GAGTTGTGTCCGGGCCTG 60.359 66.667 2.12 3.88 0.00 4.85
332 333 3.637273 GGAGTTGTGTCCGGGCCT 61.637 66.667 2.12 0.00 0.00 5.19
333 334 2.764637 AATGGAGTTGTGTCCGGGCC 62.765 60.000 2.12 0.00 39.81 5.80
334 335 1.303317 AATGGAGTTGTGTCCGGGC 60.303 57.895 0.00 0.00 39.81 6.13
335 336 1.586154 GCAATGGAGTTGTGTCCGGG 61.586 60.000 0.00 0.00 39.81 5.73
336 337 1.586154 GGCAATGGAGTTGTGTCCGG 61.586 60.000 0.00 0.00 39.81 5.14
337 338 1.586154 GGGCAATGGAGTTGTGTCCG 61.586 60.000 0.00 0.00 39.81 4.79
338 339 0.251341 AGGGCAATGGAGTTGTGTCC 60.251 55.000 0.00 0.00 40.07 4.02
339 340 0.883833 CAGGGCAATGGAGTTGTGTC 59.116 55.000 0.00 0.00 40.07 3.67
340 341 1.181098 GCAGGGCAATGGAGTTGTGT 61.181 55.000 0.00 0.00 40.07 3.72
341 342 0.896940 AGCAGGGCAATGGAGTTGTG 60.897 55.000 0.00 0.00 40.07 3.33
342 343 0.610232 GAGCAGGGCAATGGAGTTGT 60.610 55.000 0.00 0.00 40.07 3.32
343 344 0.609957 TGAGCAGGGCAATGGAGTTG 60.610 55.000 0.00 0.00 40.90 3.16
344 345 0.112995 TTGAGCAGGGCAATGGAGTT 59.887 50.000 0.00 0.00 0.00 3.01
345 346 0.112995 TTTGAGCAGGGCAATGGAGT 59.887 50.000 0.00 0.00 0.00 3.85
346 347 0.529378 GTTTGAGCAGGGCAATGGAG 59.471 55.000 0.00 0.00 0.00 3.86
347 348 0.178967 TGTTTGAGCAGGGCAATGGA 60.179 50.000 0.00 0.00 0.00 3.41
348 349 0.245539 CTGTTTGAGCAGGGCAATGG 59.754 55.000 0.00 0.00 33.11 3.16
349 350 1.068055 GTCTGTTTGAGCAGGGCAATG 60.068 52.381 0.00 0.00 37.12 2.82
350 351 1.251251 GTCTGTTTGAGCAGGGCAAT 58.749 50.000 0.00 0.00 37.12 3.56
351 352 0.106769 TGTCTGTTTGAGCAGGGCAA 60.107 50.000 0.00 0.00 37.12 4.52
352 353 0.535780 CTGTCTGTTTGAGCAGGGCA 60.536 55.000 0.00 0.00 37.12 5.36
353 354 0.250467 TCTGTCTGTTTGAGCAGGGC 60.250 55.000 0.00 0.00 37.12 5.19
354 355 2.260844 TTCTGTCTGTTTGAGCAGGG 57.739 50.000 0.00 0.00 37.12 4.45
355 356 2.746362 GGATTCTGTCTGTTTGAGCAGG 59.254 50.000 0.00 0.00 37.12 4.85
356 357 2.414481 CGGATTCTGTCTGTTTGAGCAG 59.586 50.000 0.00 0.00 37.81 4.24
357 358 2.416747 CGGATTCTGTCTGTTTGAGCA 58.583 47.619 0.00 0.00 0.00 4.26
358 359 1.734465 CCGGATTCTGTCTGTTTGAGC 59.266 52.381 0.00 0.00 0.00 4.26
359 360 2.350522 CCCGGATTCTGTCTGTTTGAG 58.649 52.381 0.73 0.00 0.00 3.02
360 361 1.610624 GCCCGGATTCTGTCTGTTTGA 60.611 52.381 0.73 0.00 0.00 2.69
361 362 0.804989 GCCCGGATTCTGTCTGTTTG 59.195 55.000 0.73 0.00 0.00 2.93
362 363 0.400213 TGCCCGGATTCTGTCTGTTT 59.600 50.000 0.73 0.00 0.00 2.83
363 364 0.400213 TTGCCCGGATTCTGTCTGTT 59.600 50.000 0.73 0.00 0.00 3.16
364 365 0.400213 TTTGCCCGGATTCTGTCTGT 59.600 50.000 0.73 0.00 0.00 3.41
365 366 1.200020 GTTTTGCCCGGATTCTGTCTG 59.800 52.381 0.73 0.00 0.00 3.51
366 367 1.534729 GTTTTGCCCGGATTCTGTCT 58.465 50.000 0.73 0.00 0.00 3.41
367 368 0.168128 CGTTTTGCCCGGATTCTGTC 59.832 55.000 0.73 0.00 0.00 3.51
368 369 2.253513 CGTTTTGCCCGGATTCTGT 58.746 52.632 0.73 0.00 0.00 3.41
376 377 4.693525 GAACGCCCGTTTTGCCCG 62.694 66.667 7.54 0.00 38.60 6.13
377 378 2.428960 AATGAACGCCCGTTTTGCCC 62.429 55.000 7.54 0.00 38.60 5.36
378 379 0.598942 AAATGAACGCCCGTTTTGCC 60.599 50.000 7.54 0.00 38.60 4.52
379 380 0.506506 CAAATGAACGCCCGTTTTGC 59.493 50.000 7.54 0.00 38.60 3.68
380 381 1.135867 CCAAATGAACGCCCGTTTTG 58.864 50.000 7.54 8.19 38.60 2.44
381 382 0.032815 CCCAAATGAACGCCCGTTTT 59.967 50.000 7.54 0.00 38.60 2.43
382 383 1.663173 CCCAAATGAACGCCCGTTT 59.337 52.632 7.54 0.00 38.60 3.60
383 384 2.272447 CCCCAAATGAACGCCCGTT 61.272 57.895 5.67 5.67 41.54 4.44
384 385 2.675075 CCCCAAATGAACGCCCGT 60.675 61.111 0.00 0.00 0.00 5.28
385 386 4.128388 GCCCCAAATGAACGCCCG 62.128 66.667 0.00 0.00 0.00 6.13
386 387 4.128388 CGCCCCAAATGAACGCCC 62.128 66.667 0.00 0.00 0.00 6.13
387 388 3.370231 ACGCCCCAAATGAACGCC 61.370 61.111 0.00 0.00 0.00 5.68
388 389 2.126502 CACGCCCCAAATGAACGC 60.127 61.111 0.00 0.00 0.00 4.84
389 390 0.031449 AAACACGCCCCAAATGAACG 59.969 50.000 0.00 0.00 0.00 3.95
390 391 1.496934 CAAACACGCCCCAAATGAAC 58.503 50.000 0.00 0.00 0.00 3.18
391 392 0.390860 CCAAACACGCCCCAAATGAA 59.609 50.000 0.00 0.00 0.00 2.57
392 393 0.757188 ACCAAACACGCCCCAAATGA 60.757 50.000 0.00 0.00 0.00 2.57
393 394 0.105778 AACCAAACACGCCCCAAATG 59.894 50.000 0.00 0.00 0.00 2.32
417 418 2.671070 CCTGGTTGGGCTCGATGT 59.329 61.111 0.00 0.00 0.00 3.06
450 451 2.909965 GCAACCAAACGGGCCTCA 60.910 61.111 0.84 0.00 42.05 3.86
457 458 1.566404 GAAAACCAGGCAACCAAACG 58.434 50.000 0.00 0.00 37.17 3.60
688 689 0.995024 AAGGAAGGCAGTGGCTATGT 59.005 50.000 20.91 4.04 37.50 2.29
702 704 3.587061 TGATGCAGTAGGGAAGAAAGGAA 59.413 43.478 0.00 0.00 0.00 3.36
703 705 3.055094 GTGATGCAGTAGGGAAGAAAGGA 60.055 47.826 0.00 0.00 0.00 3.36
826 828 2.301583 TCGACCAGATGATGACCAACAA 59.698 45.455 0.00 0.00 0.00 2.83
833 835 4.474394 AGATTAGGTCGACCAGATGATGA 58.526 43.478 35.00 11.64 38.89 2.92
852 854 1.504275 GGGGGAGCCATGGCATAGAT 61.504 60.000 37.18 17.76 44.88 1.98
856 858 2.038438 TAGGGGGAGCCATGGCAT 60.038 61.111 37.18 22.55 44.88 4.40
896 898 2.602676 GGAGGGGGTGCTGCTTACA 61.603 63.158 0.00 0.00 0.00 2.41
929 931 1.350019 AGCTTAACGGCCTAACCACTT 59.650 47.619 0.00 0.00 39.03 3.16
990 992 2.102420 CCGTGCATCCATAACCTAGTCA 59.898 50.000 0.00 0.00 0.00 3.41
1042 1044 1.670811 CCATGCCCGAATCACACTAAC 59.329 52.381 0.00 0.00 0.00 2.34
1055 1057 0.748450 CATGAACATGACCCATGCCC 59.252 55.000 8.89 0.73 44.80 5.36
1143 1145 4.764172 AGTTCAGATTTTGGATCCTCTCG 58.236 43.478 14.23 3.14 0.00 4.04
1175 1177 3.084579 CCTCGACGTCATTGCAGC 58.915 61.111 17.16 0.00 0.00 5.25
1291 1294 3.026694 GGAATATGGCCACTTGCTCTTT 58.973 45.455 8.16 0.00 40.92 2.52
1308 1311 1.203162 TGGCCAACAACATGGAGGAAT 60.203 47.619 0.61 0.00 43.54 3.01
1377 1380 5.516044 TGCTTGAAGTACCTAGAGATGGTA 58.484 41.667 0.00 0.00 38.88 3.25
1412 1415 2.122768 CTCCTCTAAGCTCCCCAACAT 58.877 52.381 0.00 0.00 0.00 2.71
1475 1480 1.141053 GATACCATCTTGGGCTTCCGT 59.859 52.381 0.00 0.00 43.37 4.69
1779 1789 2.544694 CCATCAGGTCGACTCATGCTAC 60.545 54.545 16.46 0.00 0.00 3.58
1780 1790 1.683385 CCATCAGGTCGACTCATGCTA 59.317 52.381 16.46 0.00 0.00 3.49
1802 1812 2.511600 GCCGTCGGGGATGTTGAG 60.512 66.667 14.38 0.00 38.47 3.02
1858 1868 2.576191 CCTGAAGGGTGGAAGAATACCA 59.424 50.000 0.00 0.00 38.74 3.25
1926 1936 2.324014 AAACAGCTCCCGTGCAGTCA 62.324 55.000 0.00 0.00 31.53 3.41
1935 1945 3.935828 GTGTCTGAGATTAAACAGCTCCC 59.064 47.826 0.00 0.00 37.08 4.30
2208 2218 1.528129 CTCTGCCCACTTCAACCTTC 58.472 55.000 0.00 0.00 0.00 3.46
2216 2226 2.270205 CATCGCCTCTGCCCACTT 59.730 61.111 0.00 0.00 0.00 3.16
2230 2240 5.447818 GCACTGACTTATGTTAAGCCACATC 60.448 44.000 0.00 0.00 38.40 3.06
2244 2254 5.227569 TCTTCAAATCCTGCACTGACTTA 57.772 39.130 0.00 0.00 0.00 2.24
2246 2256 3.777106 TCTTCAAATCCTGCACTGACT 57.223 42.857 0.00 0.00 0.00 3.41
2268 2278 1.025647 GCTGCTGCTTCCTTCTCCTG 61.026 60.000 8.53 0.00 36.03 3.86
2273 2283 1.924320 CTGCTGCTGCTGCTTCCTTC 61.924 60.000 27.67 2.64 40.48 3.46
2274 2284 1.972223 CTGCTGCTGCTGCTTCCTT 60.972 57.895 27.67 0.00 40.48 3.36
2275 2285 2.360100 CTGCTGCTGCTGCTTCCT 60.360 61.111 27.67 0.00 40.48 3.36
2281 2291 2.871099 CTTCTGCTGCTGCTGCTG 59.129 61.111 27.67 26.32 40.48 4.41
2301 2311 5.041191 TGCTTGTTCTTCCTCTTCTTCTT 57.959 39.130 0.00 0.00 0.00 2.52
2318 2328 0.663568 GCTTCTGCTGTTGCTGCTTG 60.664 55.000 0.00 0.00 40.48 4.01
2327 2346 2.289569 CCTCTTCTTCTGCTTCTGCTGT 60.290 50.000 0.00 0.00 40.48 4.40
2360 2388 2.027469 GGGGATAGTTCTTCGGTGTTGT 60.027 50.000 0.00 0.00 0.00 3.32
2370 2398 6.240292 CCATTGGCTAAATAGGGGATAGTTCT 60.240 42.308 0.00 0.00 0.00 3.01
2408 2436 8.570096 TCCTAACTAATATCAAATGACGTTCG 57.430 34.615 0.00 0.00 0.00 3.95
2482 2511 7.215085 CACTTTTAACTAGTGGTGACCTTACT 58.785 38.462 2.11 0.94 39.42 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.