Multiple sequence alignment - TraesCS7B01G394900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G394900 chr7B 100.000 2429 0 0 1 2429 662650392 662652820 0.000000e+00 4486
1 TraesCS7B01G394900 chr7B 91.010 901 65 6 665 1561 662465371 662466259 0.000000e+00 1201
2 TraesCS7B01G394900 chr7B 86.357 667 54 21 931 1579 662311551 662310904 0.000000e+00 693
3 TraesCS7B01G394900 chr7B 82.811 797 81 37 726 1509 661998754 661999507 0.000000e+00 662
4 TraesCS7B01G394900 chr7B 86.891 595 47 22 928 1511 661716604 661717178 2.630000e-179 638
5 TraesCS7B01G394900 chr7B 87.763 523 45 13 1063 1579 661913343 661913852 5.780000e-166 593
6 TraesCS7B01G394900 chr7B 87.476 527 40 18 931 1445 662010031 662009519 3.480000e-163 584
7 TraesCS7B01G394900 chr7D 91.917 1163 82 8 637 1788 588540613 588541774 0.000000e+00 1616
8 TraesCS7B01G394900 chr7D 87.446 1147 100 24 637 1748 588538626 588539763 0.000000e+00 1280
9 TraesCS7B01G394900 chr7D 90.931 816 57 10 637 1445 588432877 588432072 0.000000e+00 1081
10 TraesCS7B01G394900 chr7D 87.625 598 41 20 928 1511 588409227 588409805 0.000000e+00 664
11 TraesCS7B01G394900 chr7D 85.246 671 43 30 931 1579 588471847 588471211 7.320000e-180 640
12 TraesCS7B01G394900 chr7D 88.073 545 40 11 928 1463 596092806 596093334 7.370000e-175 623
13 TraesCS7B01G394900 chr7D 87.687 536 29 17 928 1445 588252959 588253475 7.480000e-165 590
14 TraesCS7B01G394900 chr7D 91.633 251 21 0 1691 1941 588541734 588541984 4.970000e-92 348
15 TraesCS7B01G394900 chr7D 90.123 243 20 4 2067 2309 588542033 588542271 1.810000e-81 313
16 TraesCS7B01G394900 chr7A 89.972 1067 81 14 637 1681 680324947 680326009 0.000000e+00 1354
17 TraesCS7B01G394900 chr7A 87.884 553 36 13 928 1465 680244514 680245050 2.650000e-174 621
18 TraesCS7B01G394900 chr7A 82.153 734 91 24 724 1445 680264793 680264088 5.780000e-166 593
19 TraesCS7B01G394900 chr7A 83.468 617 86 13 1 613 115246898 115246294 5.860000e-156 560
20 TraesCS7B01G394900 chr7A 85.347 389 45 10 1898 2277 680326025 680326410 2.260000e-105 392
21 TraesCS7B01G394900 chr3D 85.826 642 77 10 2 638 238616302 238616934 0.000000e+00 669
22 TraesCS7B01G394900 chr3D 84.380 653 74 14 1 638 522089462 522090101 1.230000e-172 616
23 TraesCS7B01G394900 chr3D 91.189 454 26 5 997 1449 455037408 455036968 2.670000e-169 604
24 TraesCS7B01G394900 chr3D 81.081 629 94 17 19 632 121209863 121209245 1.690000e-131 479
25 TraesCS7B01G394900 chr3D 80.093 643 108 15 4 634 562217939 562217305 6.120000e-126 460
26 TraesCS7B01G394900 chr3B 84.793 651 73 14 1 634 225298822 225299463 4.410000e-177 630
27 TraesCS7B01G394900 chr2D 84.603 643 84 10 1 635 572355099 572354464 2.050000e-175 625
28 TraesCS7B01G394900 chr2D 89.873 395 22 7 1051 1430 399347696 399348087 2.170000e-135 492
29 TraesCS7B01G394900 chr2D 80.751 639 96 20 1 628 505533821 505534443 7.860000e-130 473
30 TraesCS7B01G394900 chr1D 87.554 466 31 12 990 1430 464802542 464802079 4.630000e-142 514
31 TraesCS7B01G394900 chr1D 80.376 744 74 32 726 1430 451524394 451525104 1.300000e-137 499
32 TraesCS7B01G394900 chr1D 86.458 480 28 12 984 1430 446434806 446435281 2.170000e-135 492
33 TraesCS7B01G394900 chrUn 81.144 647 93 19 1 632 61035149 61035781 2.170000e-135 492
34 TraesCS7B01G394900 chr2B 80.967 641 97 18 8 634 441920696 441920067 3.630000e-133 484
35 TraesCS7B01G394900 chr4B 93.313 329 19 1 1106 1431 553863911 553864239 1.310000e-132 483
36 TraesCS7B01G394900 chr1A 88.725 408 29 8 1051 1444 401227249 401226845 1.310000e-132 483
37 TraesCS7B01G394900 chr1A 86.071 481 28 16 984 1430 542167981 542168456 4.700000e-132 481
38 TraesCS7B01G394900 chr5D 96.071 280 11 0 1152 1431 58686028 58685749 7.920000e-125 457


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G394900 chr7B 662650392 662652820 2428 False 4486.00 4486 100.00000 1 2429 1 chr7B.!!$F5 2428
1 TraesCS7B01G394900 chr7B 662465371 662466259 888 False 1201.00 1201 91.01000 665 1561 1 chr7B.!!$F4 896
2 TraesCS7B01G394900 chr7B 662310904 662311551 647 True 693.00 693 86.35700 931 1579 1 chr7B.!!$R2 648
3 TraesCS7B01G394900 chr7B 661998754 661999507 753 False 662.00 662 82.81100 726 1509 1 chr7B.!!$F3 783
4 TraesCS7B01G394900 chr7B 661716604 661717178 574 False 638.00 638 86.89100 928 1511 1 chr7B.!!$F1 583
5 TraesCS7B01G394900 chr7B 661913343 661913852 509 False 593.00 593 87.76300 1063 1579 1 chr7B.!!$F2 516
6 TraesCS7B01G394900 chr7B 662009519 662010031 512 True 584.00 584 87.47600 931 1445 1 chr7B.!!$R1 514
7 TraesCS7B01G394900 chr7D 588432072 588432877 805 True 1081.00 1081 90.93100 637 1445 1 chr7D.!!$R1 808
8 TraesCS7B01G394900 chr7D 588538626 588542271 3645 False 889.25 1616 90.27975 637 2309 4 chr7D.!!$F4 1672
9 TraesCS7B01G394900 chr7D 588409227 588409805 578 False 664.00 664 87.62500 928 1511 1 chr7D.!!$F2 583
10 TraesCS7B01G394900 chr7D 588471211 588471847 636 True 640.00 640 85.24600 931 1579 1 chr7D.!!$R2 648
11 TraesCS7B01G394900 chr7D 596092806 596093334 528 False 623.00 623 88.07300 928 1463 1 chr7D.!!$F3 535
12 TraesCS7B01G394900 chr7D 588252959 588253475 516 False 590.00 590 87.68700 928 1445 1 chr7D.!!$F1 517
13 TraesCS7B01G394900 chr7A 680324947 680326410 1463 False 873.00 1354 87.65950 637 2277 2 chr7A.!!$F2 1640
14 TraesCS7B01G394900 chr7A 680244514 680245050 536 False 621.00 621 87.88400 928 1465 1 chr7A.!!$F1 537
15 TraesCS7B01G394900 chr7A 680264088 680264793 705 True 593.00 593 82.15300 724 1445 1 chr7A.!!$R2 721
16 TraesCS7B01G394900 chr7A 115246294 115246898 604 True 560.00 560 83.46800 1 613 1 chr7A.!!$R1 612
17 TraesCS7B01G394900 chr3D 238616302 238616934 632 False 669.00 669 85.82600 2 638 1 chr3D.!!$F1 636
18 TraesCS7B01G394900 chr3D 522089462 522090101 639 False 616.00 616 84.38000 1 638 1 chr3D.!!$F2 637
19 TraesCS7B01G394900 chr3D 121209245 121209863 618 True 479.00 479 81.08100 19 632 1 chr3D.!!$R1 613
20 TraesCS7B01G394900 chr3D 562217305 562217939 634 True 460.00 460 80.09300 4 634 1 chr3D.!!$R3 630
21 TraesCS7B01G394900 chr3B 225298822 225299463 641 False 630.00 630 84.79300 1 634 1 chr3B.!!$F1 633
22 TraesCS7B01G394900 chr2D 572354464 572355099 635 True 625.00 625 84.60300 1 635 1 chr2D.!!$R1 634
23 TraesCS7B01G394900 chr2D 505533821 505534443 622 False 473.00 473 80.75100 1 628 1 chr2D.!!$F2 627
24 TraesCS7B01G394900 chr1D 451524394 451525104 710 False 499.00 499 80.37600 726 1430 1 chr1D.!!$F2 704
25 TraesCS7B01G394900 chrUn 61035149 61035781 632 False 492.00 492 81.14400 1 632 1 chrUn.!!$F1 631
26 TraesCS7B01G394900 chr2B 441920067 441920696 629 True 484.00 484 80.96700 8 634 1 chr2B.!!$R1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 646 0.179004 ACCGCAGACAAAATGGGTCA 60.179 50.0 0.0 0.0 37.74 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2309 4511 0.035439 GATTCCAAGGAGGCCGTGAA 60.035 55.0 0.0 0.0 35.05 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.031163 GCTTGGACGAGGCTGTGT 59.969 61.111 0.00 0.00 0.00 3.72
34 35 1.293498 CGAGGCTGTGTTGGCTAGT 59.707 57.895 0.00 0.00 43.09 2.57
190 191 4.069232 CCTCTTGGCCGACTCGCA 62.069 66.667 0.00 0.00 0.00 5.10
233 234 1.680338 CCTTATTTGGCTTCCTCGGG 58.320 55.000 0.00 0.00 0.00 5.14
234 235 1.680338 CTTATTTGGCTTCCTCGGGG 58.320 55.000 0.00 0.00 0.00 5.73
235 236 0.395173 TTATTTGGCTTCCTCGGGGC 60.395 55.000 0.00 0.00 0.00 5.80
236 237 1.279025 TATTTGGCTTCCTCGGGGCT 61.279 55.000 0.00 0.00 0.00 5.19
341 346 4.722700 GTGGCGTCCATGGCTGGT 62.723 66.667 6.96 0.00 43.61 4.00
344 353 2.672996 GCGTCCATGGCTGGTTGT 60.673 61.111 6.96 0.00 43.61 3.32
380 397 1.751544 GCGGGGCGGGAGTATTTTT 60.752 57.895 0.00 0.00 0.00 1.94
388 407 3.508402 GGCGGGAGTATTTTTGGAGAAAA 59.492 43.478 0.00 0.00 0.00 2.29
389 408 4.159693 GGCGGGAGTATTTTTGGAGAAAAT 59.840 41.667 2.74 2.74 31.07 1.82
400 419 2.187100 TGGAGAAAATGGGGGAAATGC 58.813 47.619 0.00 0.00 0.00 3.56
448 471 3.518998 GAGAGGAGTAGGCGCGCA 61.519 66.667 34.42 10.96 0.00 6.09
527 550 4.049640 GCCATGCGGACGCCAAAA 62.050 61.111 14.61 0.00 41.09 2.44
552 585 2.239124 GCGTTCGTTTGGGTCGACA 61.239 57.895 18.91 0.00 37.05 4.35
613 646 0.179004 ACCGCAGACAAAATGGGTCA 60.179 50.000 0.00 0.00 37.74 4.02
614 647 1.176527 CCGCAGACAAAATGGGTCAT 58.823 50.000 0.00 0.00 37.74 3.06
628 661 1.271163 GGGTCATCCCGTTGAAGTTGA 60.271 52.381 0.00 0.00 44.74 3.18
634 667 5.642063 GTCATCCCGTTGAAGTTGATCTTAA 59.358 40.000 0.00 0.00 36.40 1.85
635 668 5.642063 TCATCCCGTTGAAGTTGATCTTAAC 59.358 40.000 0.00 0.00 36.40 2.01
641 674 6.079763 CGTTGAAGTTGATCTTAACACATGG 58.920 40.000 0.00 0.00 36.40 3.66
644 677 6.969366 TGAAGTTGATCTTAACACATGGTTG 58.031 36.000 0.00 0.00 40.73 3.77
690 2710 3.081061 TGGATGGAAAACAATCTGACCG 58.919 45.455 0.00 0.00 0.00 4.79
696 2716 5.768317 TGGAAAACAATCTGACCGAAAATC 58.232 37.500 0.00 0.00 0.00 2.17
699 2719 2.356135 ACAATCTGACCGAAAATCCCG 58.644 47.619 0.00 0.00 0.00 5.14
721 2741 4.142665 CGGTCACGAAGAGAGTTTGATCTA 60.143 45.833 0.00 0.00 44.60 1.98
722 2742 5.449314 CGGTCACGAAGAGAGTTTGATCTAT 60.449 44.000 0.00 0.00 44.60 1.98
730 2751 2.771943 AGAGTTTGATCTATCCGCCCAA 59.228 45.455 0.00 0.00 0.00 4.12
789 2813 1.742831 GCCGTCCATCATAAACAGCAA 59.257 47.619 0.00 0.00 0.00 3.91
813 2837 0.179161 CGGCTGATATCCGTCGATCC 60.179 60.000 15.05 0.00 41.85 3.36
911 2937 2.421739 CGCACCCTCCCCTTATCG 59.578 66.667 0.00 0.00 0.00 2.92
919 2945 1.557832 CCTCCCCTTATCGTCACCAAA 59.442 52.381 0.00 0.00 0.00 3.28
920 2946 2.026636 CCTCCCCTTATCGTCACCAAAA 60.027 50.000 0.00 0.00 0.00 2.44
1554 3674 5.121298 CACACTGTTTCATCATCTCGTGAAT 59.879 40.000 0.00 0.00 40.97 2.57
1555 3675 5.349817 ACACTGTTTCATCATCTCGTGAATC 59.650 40.000 0.00 0.00 40.97 2.52
1562 3682 6.456795 TCATCATCTCGTGAATCAGTAACT 57.543 37.500 0.00 0.00 40.97 2.24
1563 3683 6.867550 TCATCATCTCGTGAATCAGTAACTT 58.132 36.000 0.00 0.00 40.97 2.66
1581 3701 7.702348 CAGTAACTTTGCTTATTTATTCTGGCC 59.298 37.037 0.00 0.00 0.00 5.36
1598 3718 1.133790 GGCCATCATGTTCTTGTGCTC 59.866 52.381 0.00 0.00 0.00 4.26
1633 3765 4.872691 AGTTCTTGCTATGATCCTGTTTCG 59.127 41.667 0.00 0.00 0.00 3.46
1634 3766 4.471904 TCTTGCTATGATCCTGTTTCGT 57.528 40.909 0.00 0.00 0.00 3.85
1635 3767 4.832248 TCTTGCTATGATCCTGTTTCGTT 58.168 39.130 0.00 0.00 0.00 3.85
1636 3768 4.870426 TCTTGCTATGATCCTGTTTCGTTC 59.130 41.667 0.00 0.00 0.00 3.95
1637 3769 4.200838 TGCTATGATCCTGTTTCGTTCA 57.799 40.909 0.00 0.00 0.00 3.18
1653 3790 2.350772 CGTTCATCTTGGTTTGGTCTGC 60.351 50.000 0.00 0.00 0.00 4.26
1706 3843 4.090642 GCAAATCTCTGTAGACAACGACAG 59.909 45.833 0.00 0.00 46.14 3.51
1726 3920 4.274459 ACAGTGAACTTGCAGAGATGTTTC 59.726 41.667 0.00 0.00 0.00 2.78
1771 3965 1.670811 CAGACAACGGCACTGAACTTT 59.329 47.619 0.00 0.00 34.07 2.66
1801 3995 1.584724 TCTCTGAACCTTGGGGATCC 58.415 55.000 1.92 1.92 34.02 3.36
1804 3998 0.394899 CTGAACCTTGGGGATCCAGC 60.395 60.000 15.23 0.00 45.04 4.85
1834 4028 4.213482 GTCGAACTGAAAATTACTGGCACT 59.787 41.667 0.00 0.00 0.00 4.40
1843 4037 4.489306 AATTACTGGCACTCTAGGGTTC 57.511 45.455 0.00 0.00 0.00 3.62
1847 4041 3.034635 ACTGGCACTCTAGGGTTCATAG 58.965 50.000 0.00 0.00 0.00 2.23
1848 4042 3.034635 CTGGCACTCTAGGGTTCATAGT 58.965 50.000 0.00 0.00 0.00 2.12
1867 4061 9.562583 TTCATAGTAATTTAAAATCGTTGGCAC 57.437 29.630 0.00 0.00 0.00 5.01
1880 4074 0.246360 TTGGCACGACGACATGATCT 59.754 50.000 0.00 0.00 0.00 2.75
1883 4077 1.324736 GGCACGACGACATGATCTTTC 59.675 52.381 0.00 0.00 0.00 2.62
1922 4116 4.173256 CCAATTCGATAGTTTGGGTTTGC 58.827 43.478 8.35 0.00 42.60 3.68
1927 4121 4.612943 TCGATAGTTTGGGTTTGCAAAAC 58.387 39.130 19.18 19.18 34.68 2.43
1941 4135 1.142965 AAAACGGCACCAACTTGGC 59.857 52.632 7.81 0.00 42.67 4.52
1950 4144 1.224592 CCAACTTGGCGGGCTAGAT 59.775 57.895 18.83 5.01 0.00 1.98
1964 4158 4.714632 GGGCTAGATGCAATTTGTAGGTA 58.285 43.478 0.00 0.00 45.15 3.08
1965 4159 5.316987 GGGCTAGATGCAATTTGTAGGTAT 58.683 41.667 0.00 0.00 45.15 2.73
1979 4173 5.927281 TGTAGGTATCTGGTTTCCTGTAC 57.073 43.478 0.00 0.00 0.00 2.90
1983 4177 3.698040 GGTATCTGGTTTCCTGTACGAGA 59.302 47.826 0.00 0.00 35.33 4.04
2002 4197 3.338250 ATCGGGGCAGGGCAGAAA 61.338 61.111 0.00 0.00 0.00 2.52
2013 4208 1.177401 GGGCAGAAAGTTGTGGGATC 58.823 55.000 0.00 0.00 0.00 3.36
2042 4237 5.365314 ACAAGCATAAACCAAGGAGGAAAAA 59.635 36.000 0.00 0.00 41.22 1.94
2043 4238 6.043127 ACAAGCATAAACCAAGGAGGAAAAAT 59.957 34.615 0.00 0.00 41.22 1.82
2044 4239 6.041423 AGCATAAACCAAGGAGGAAAAATG 57.959 37.500 0.00 0.00 41.22 2.32
2045 4240 5.779771 AGCATAAACCAAGGAGGAAAAATGA 59.220 36.000 0.00 0.00 41.22 2.57
2046 4241 5.869344 GCATAAACCAAGGAGGAAAAATGAC 59.131 40.000 0.00 0.00 41.22 3.06
2047 4242 4.955811 AAACCAAGGAGGAAAAATGACC 57.044 40.909 0.00 0.00 41.22 4.02
2132 4329 6.072112 TGCAAGTGTGAGTTTATTCCTTTC 57.928 37.500 0.00 0.00 0.00 2.62
2191 4388 3.550820 ACTTGTGAGTTGCATTGGTGTA 58.449 40.909 0.00 0.00 29.87 2.90
2227 4427 3.306472 AACCAGAGTTTAGGCCACAAA 57.694 42.857 5.01 1.20 29.61 2.83
2286 4488 3.691609 GTCCCTCTTTGTTCCTAGCATTG 59.308 47.826 0.00 0.00 0.00 2.82
2290 4492 4.520492 CCTCTTTGTTCCTAGCATTGTTGT 59.480 41.667 0.00 0.00 0.00 3.32
2292 4494 6.375455 CCTCTTTGTTCCTAGCATTGTTGTAT 59.625 38.462 0.00 0.00 0.00 2.29
2294 4496 6.939730 TCTTTGTTCCTAGCATTGTTGTATCA 59.060 34.615 0.00 0.00 0.00 2.15
2317 4519 7.648142 TCATAATATTTCTTTCATTCACGGCC 58.352 34.615 0.00 0.00 0.00 6.13
2318 4520 7.502226 TCATAATATTTCTTTCATTCACGGCCT 59.498 33.333 0.00 0.00 0.00 5.19
2319 4521 5.757850 ATATTTCTTTCATTCACGGCCTC 57.242 39.130 0.00 0.00 0.00 4.70
2320 4522 1.821216 TTCTTTCATTCACGGCCTCC 58.179 50.000 0.00 0.00 0.00 4.30
2321 4523 0.984230 TCTTTCATTCACGGCCTCCT 59.016 50.000 0.00 0.00 0.00 3.69
2322 4524 1.351017 TCTTTCATTCACGGCCTCCTT 59.649 47.619 0.00 0.00 0.00 3.36
2323 4525 1.470098 CTTTCATTCACGGCCTCCTTG 59.530 52.381 0.00 0.00 0.00 3.61
2324 4526 0.322456 TTCATTCACGGCCTCCTTGG 60.322 55.000 0.00 0.00 39.35 3.61
2325 4527 1.198094 TCATTCACGGCCTCCTTGGA 61.198 55.000 0.00 0.00 38.35 3.53
2326 4528 0.322456 CATTCACGGCCTCCTTGGAA 60.322 55.000 0.00 0.00 38.35 3.53
2327 4529 0.625849 ATTCACGGCCTCCTTGGAAT 59.374 50.000 0.00 0.00 38.35 3.01
2328 4530 0.035439 TTCACGGCCTCCTTGGAATC 60.035 55.000 0.00 0.00 38.35 2.52
2329 4531 0.909610 TCACGGCCTCCTTGGAATCT 60.910 55.000 0.00 0.00 38.35 2.40
2330 4532 0.830648 CACGGCCTCCTTGGAATCTA 59.169 55.000 0.00 0.00 38.35 1.98
2331 4533 1.123928 ACGGCCTCCTTGGAATCTAG 58.876 55.000 0.00 0.00 38.35 2.43
2332 4534 0.394565 CGGCCTCCTTGGAATCTAGG 59.605 60.000 0.00 0.00 38.35 3.02
2333 4535 0.767998 GGCCTCCTTGGAATCTAGGG 59.232 60.000 0.00 0.00 36.70 3.53
2334 4536 1.695989 GGCCTCCTTGGAATCTAGGGA 60.696 57.143 0.00 0.00 36.70 4.20
2335 4537 2.127708 GCCTCCTTGGAATCTAGGGAA 58.872 52.381 0.00 0.00 36.70 3.97
2336 4538 2.509964 GCCTCCTTGGAATCTAGGGAAA 59.490 50.000 0.00 0.00 36.70 3.13
2337 4539 3.434310 GCCTCCTTGGAATCTAGGGAAAG 60.434 52.174 0.00 0.00 36.70 2.62
2338 4540 4.040755 CCTCCTTGGAATCTAGGGAAAGA 58.959 47.826 0.00 0.00 36.70 2.52
2339 4541 4.475016 CCTCCTTGGAATCTAGGGAAAGAA 59.525 45.833 0.00 0.00 36.70 2.52
2340 4542 5.044846 CCTCCTTGGAATCTAGGGAAAGAAA 60.045 44.000 0.00 0.00 36.70 2.52
2341 4543 6.463053 TCCTTGGAATCTAGGGAAAGAAAA 57.537 37.500 0.00 0.00 36.70 2.29
2342 4544 6.485171 TCCTTGGAATCTAGGGAAAGAAAAG 58.515 40.000 0.00 0.00 36.70 2.27
2343 4545 6.045577 TCCTTGGAATCTAGGGAAAGAAAAGT 59.954 38.462 0.00 0.00 36.70 2.66
2344 4546 6.721668 CCTTGGAATCTAGGGAAAGAAAAGTT 59.278 38.462 0.00 0.00 33.21 2.66
2345 4547 7.309438 CCTTGGAATCTAGGGAAAGAAAAGTTG 60.309 40.741 0.00 0.00 33.21 3.16
2346 4548 6.010219 TGGAATCTAGGGAAAGAAAAGTTGG 58.990 40.000 0.00 0.00 0.00 3.77
2347 4549 6.010850 GGAATCTAGGGAAAGAAAAGTTGGT 58.989 40.000 0.00 0.00 0.00 3.67
2348 4550 7.173032 GGAATCTAGGGAAAGAAAAGTTGGTA 58.827 38.462 0.00 0.00 0.00 3.25
2349 4551 7.337184 GGAATCTAGGGAAAGAAAAGTTGGTAG 59.663 40.741 0.00 0.00 0.00 3.18
2350 4552 7.569599 ATCTAGGGAAAGAAAAGTTGGTAGA 57.430 36.000 0.00 0.00 0.00 2.59
2351 4553 7.383156 TCTAGGGAAAGAAAAGTTGGTAGAA 57.617 36.000 0.00 0.00 0.00 2.10
2352 4554 7.222161 TCTAGGGAAAGAAAAGTTGGTAGAAC 58.778 38.462 0.00 0.00 0.00 3.01
2353 4555 5.762279 AGGGAAAGAAAAGTTGGTAGAACA 58.238 37.500 0.00 0.00 0.00 3.18
2354 4556 5.828328 AGGGAAAGAAAAGTTGGTAGAACAG 59.172 40.000 0.00 0.00 0.00 3.16
2355 4557 5.826208 GGGAAAGAAAAGTTGGTAGAACAGA 59.174 40.000 0.00 0.00 0.00 3.41
2356 4558 6.238676 GGGAAAGAAAAGTTGGTAGAACAGAC 60.239 42.308 0.00 0.00 0.00 3.51
2357 4559 6.317893 GGAAAGAAAAGTTGGTAGAACAGACA 59.682 38.462 0.00 0.00 0.00 3.41
2358 4560 6.679327 AAGAAAAGTTGGTAGAACAGACAC 57.321 37.500 0.00 0.00 0.00 3.67
2359 4561 5.741011 AGAAAAGTTGGTAGAACAGACACA 58.259 37.500 0.00 0.00 0.00 3.72
2360 4562 6.177610 AGAAAAGTTGGTAGAACAGACACAA 58.822 36.000 0.00 0.00 0.00 3.33
2361 4563 5.813080 AAAGTTGGTAGAACAGACACAAC 57.187 39.130 0.00 0.00 38.67 3.32
2362 4564 3.454375 AGTTGGTAGAACAGACACAACG 58.546 45.455 0.00 0.00 42.03 4.10
2363 4565 3.131577 AGTTGGTAGAACAGACACAACGA 59.868 43.478 0.00 0.00 42.03 3.85
2364 4566 3.804786 TGGTAGAACAGACACAACGAA 57.195 42.857 0.00 0.00 0.00 3.85
2365 4567 4.126208 TGGTAGAACAGACACAACGAAA 57.874 40.909 0.00 0.00 0.00 3.46
2366 4568 4.505808 TGGTAGAACAGACACAACGAAAA 58.494 39.130 0.00 0.00 0.00 2.29
2367 4569 5.120399 TGGTAGAACAGACACAACGAAAAT 58.880 37.500 0.00 0.00 0.00 1.82
2368 4570 5.007234 TGGTAGAACAGACACAACGAAAATG 59.993 40.000 0.00 0.00 0.00 2.32
2369 4571 4.552166 AGAACAGACACAACGAAAATGG 57.448 40.909 0.00 0.00 0.00 3.16
2370 4572 2.774439 ACAGACACAACGAAAATGGC 57.226 45.000 0.00 0.00 0.00 4.40
2371 4573 1.002900 ACAGACACAACGAAAATGGCG 60.003 47.619 0.00 0.00 0.00 5.69
2372 4574 1.262950 CAGACACAACGAAAATGGCGA 59.737 47.619 0.00 0.00 0.00 5.54
2373 4575 2.095768 CAGACACAACGAAAATGGCGAT 60.096 45.455 0.00 0.00 0.00 4.58
2374 4576 3.124466 CAGACACAACGAAAATGGCGATA 59.876 43.478 0.00 0.00 0.00 2.92
2375 4577 3.938963 AGACACAACGAAAATGGCGATAT 59.061 39.130 0.00 0.00 0.00 1.63
2376 4578 5.006261 CAGACACAACGAAAATGGCGATATA 59.994 40.000 0.00 0.00 0.00 0.86
2377 4579 5.234329 AGACACAACGAAAATGGCGATATAG 59.766 40.000 0.00 0.00 0.00 1.31
2378 4580 4.211389 CACAACGAAAATGGCGATATAGC 58.789 43.478 0.00 0.00 0.00 2.97
2406 4608 5.446143 AAAAACAGAAATGGCGATACACA 57.554 34.783 0.00 0.00 0.00 3.72
2407 4609 5.446143 AAAACAGAAATGGCGATACACAA 57.554 34.783 0.00 0.00 0.00 3.33
2408 4610 5.643379 AAACAGAAATGGCGATACACAAT 57.357 34.783 0.00 0.00 0.00 2.71
2409 4611 4.621068 ACAGAAATGGCGATACACAATG 57.379 40.909 0.00 0.00 0.00 2.82
2410 4612 4.260985 ACAGAAATGGCGATACACAATGA 58.739 39.130 0.00 0.00 0.00 2.57
2411 4613 4.333649 ACAGAAATGGCGATACACAATGAG 59.666 41.667 0.00 0.00 0.00 2.90
2412 4614 4.571984 CAGAAATGGCGATACACAATGAGA 59.428 41.667 0.00 0.00 0.00 3.27
2413 4615 5.237996 CAGAAATGGCGATACACAATGAGAT 59.762 40.000 0.00 0.00 0.00 2.75
2414 4616 5.237996 AGAAATGGCGATACACAATGAGATG 59.762 40.000 0.00 0.00 0.00 2.90
2415 4617 2.837498 TGGCGATACACAATGAGATGG 58.163 47.619 0.00 0.00 0.00 3.51
2416 4618 1.532868 GGCGATACACAATGAGATGGC 59.467 52.381 0.00 0.00 0.00 4.40
2417 4619 1.193203 GCGATACACAATGAGATGGCG 59.807 52.381 0.00 0.00 0.00 5.69
2418 4620 1.193203 CGATACACAATGAGATGGCGC 59.807 52.381 0.00 0.00 0.00 6.53
2419 4621 1.193203 GATACACAATGAGATGGCGCG 59.807 52.381 0.00 0.00 0.00 6.86
2420 4622 0.809636 TACACAATGAGATGGCGCGG 60.810 55.000 8.83 0.00 0.00 6.46
2421 4623 3.204827 ACAATGAGATGGCGCGGC 61.205 61.111 27.61 27.61 0.00 6.53
2422 4624 4.303603 CAATGAGATGGCGCGGCG 62.304 66.667 28.22 19.62 0.00 6.46
2428 4630 4.961511 GATGGCGCGGCGGTGATA 62.962 66.667 28.22 9.62 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.679639 CGCTCTACATGCTAGGGTTAAACA 60.680 45.833 0.00 0.00 0.00 2.83
218 219 2.043953 GCCCCGAGGAAGCCAAAT 60.044 61.111 0.00 0.00 33.47 2.32
367 384 4.776795 TTTTCTCCAAAAATACTCCCGC 57.223 40.909 0.00 0.00 0.00 6.13
368 385 5.394115 CCCATTTTCTCCAAAAATACTCCCG 60.394 44.000 0.00 0.00 35.10 5.14
371 388 5.719563 TCCCCCATTTTCTCCAAAAATACTC 59.280 40.000 0.00 0.00 35.10 2.59
372 389 5.660533 TCCCCCATTTTCTCCAAAAATACT 58.339 37.500 0.00 0.00 35.10 2.12
374 391 7.401246 CATTTCCCCCATTTTCTCCAAAAATA 58.599 34.615 0.00 0.00 35.10 1.40
375 392 5.921153 TTTCCCCCATTTTCTCCAAAAAT 57.079 34.783 0.00 0.00 35.10 1.82
380 397 2.187100 GCATTTCCCCCATTTTCTCCA 58.813 47.619 0.00 0.00 0.00 3.86
388 407 0.324645 GTCACCAGCATTTCCCCCAT 60.325 55.000 0.00 0.00 0.00 4.00
389 408 1.076549 GTCACCAGCATTTCCCCCA 59.923 57.895 0.00 0.00 0.00 4.96
448 471 2.353145 GACACGACACAGACGCGT 60.353 61.111 13.85 13.85 39.04 6.01
552 585 1.826487 AGAAAAAGCGGCCCAACGT 60.826 52.632 0.00 0.00 35.98 3.99
594 627 0.179004 TGACCCATTTTGTCTGCGGT 60.179 50.000 0.00 0.00 33.83 5.68
596 629 1.133025 GGATGACCCATTTTGTCTGCG 59.867 52.381 0.00 0.00 33.83 5.18
613 646 5.411669 GTGTTAAGATCAACTTCAACGGGAT 59.588 40.000 0.00 0.00 39.72 3.85
614 647 4.753107 GTGTTAAGATCAACTTCAACGGGA 59.247 41.667 0.00 0.00 39.72 5.14
618 651 6.970484 ACCATGTGTTAAGATCAACTTCAAC 58.030 36.000 0.00 0.00 39.72 3.18
621 654 6.381801 CCAACCATGTGTTAAGATCAACTTC 58.618 40.000 0.00 0.00 39.72 3.01
622 655 5.278957 GCCAACCATGTGTTAAGATCAACTT 60.279 40.000 0.00 0.00 42.04 2.66
628 661 4.307032 AGAGCCAACCATGTGTTAAGAT 57.693 40.909 0.00 0.00 34.69 2.40
634 667 0.773644 AGGAAGAGCCAACCATGTGT 59.226 50.000 0.00 0.00 40.02 3.72
635 668 1.271543 TGAGGAAGAGCCAACCATGTG 60.272 52.381 0.00 0.00 40.02 3.21
641 674 0.322975 TCAGCTGAGGAAGAGCCAAC 59.677 55.000 13.74 0.00 40.02 3.77
644 677 1.122227 ATCTCAGCTGAGGAAGAGCC 58.878 55.000 36.92 0.00 42.30 4.70
690 2710 2.000447 CTCTTCGTGACCGGGATTTTC 59.000 52.381 6.32 0.00 33.95 2.29
696 2716 0.317479 AAACTCTCTTCGTGACCGGG 59.683 55.000 6.32 0.00 33.95 5.73
699 2719 4.181309 AGATCAAACTCTCTTCGTGACC 57.819 45.455 0.00 0.00 0.00 4.02
701 2721 5.220873 CGGATAGATCAAACTCTCTTCGTGA 60.221 44.000 0.00 0.00 0.00 4.35
721 2741 2.750237 GGCGAAAGTTGGGCGGAT 60.750 61.111 0.00 0.00 0.00 4.18
722 2742 4.257654 TGGCGAAAGTTGGGCGGA 62.258 61.111 0.00 0.00 34.20 5.54
730 2751 0.537188 ATCGATGACCTGGCGAAAGT 59.463 50.000 0.00 0.00 37.60 2.66
764 2788 0.182537 TTTATGATGGACGGCCCTGG 59.817 55.000 3.83 0.00 35.38 4.45
789 2813 2.645567 CGGATATCAGCCGCTCGT 59.354 61.111 4.83 0.00 42.55 4.18
848 2872 1.086634 GTGCGCTCTGATTGGAGGAC 61.087 60.000 9.73 0.00 34.21 3.85
906 2932 4.520874 TGGATTGCTTTTTGGTGACGATAA 59.479 37.500 0.00 0.00 0.00 1.75
908 2934 2.890311 TGGATTGCTTTTTGGTGACGAT 59.110 40.909 0.00 0.00 0.00 3.73
911 2937 4.452114 GGAATTGGATTGCTTTTTGGTGAC 59.548 41.667 0.00 0.00 0.00 3.67
919 2945 1.908619 GGTGGGGAATTGGATTGCTTT 59.091 47.619 0.00 0.00 0.00 3.51
920 2946 1.203288 TGGTGGGGAATTGGATTGCTT 60.203 47.619 0.00 0.00 0.00 3.91
1212 3317 2.050144 GACATGGCCTTGGAGGAGATA 58.950 52.381 21.67 0.00 37.67 1.98
1554 3674 8.458843 GCCAGAATAAATAAGCAAAGTTACTGA 58.541 33.333 0.00 0.00 0.00 3.41
1555 3675 7.702348 GGCCAGAATAAATAAGCAAAGTTACTG 59.298 37.037 0.00 0.00 0.00 2.74
1562 3682 6.788598 TGATGGCCAGAATAAATAAGCAAA 57.211 33.333 13.05 0.00 0.00 3.68
1563 3683 6.324512 ACATGATGGCCAGAATAAATAAGCAA 59.675 34.615 13.05 0.00 0.00 3.91
1579 3699 1.202110 CGAGCACAAGAACATGATGGC 60.202 52.381 0.00 0.00 0.00 4.40
1581 3701 3.058708 ACAACGAGCACAAGAACATGATG 60.059 43.478 0.00 0.00 0.00 3.07
1598 3718 3.643763 AGCAAGAACTACTCAGACAACG 58.356 45.455 0.00 0.00 0.00 4.10
1633 3765 2.887152 AGCAGACCAAACCAAGATGAAC 59.113 45.455 0.00 0.00 0.00 3.18
1634 3766 3.228188 AGCAGACCAAACCAAGATGAA 57.772 42.857 0.00 0.00 0.00 2.57
1635 3767 2.957402 AGCAGACCAAACCAAGATGA 57.043 45.000 0.00 0.00 0.00 2.92
1636 3768 3.181493 GCATAGCAGACCAAACCAAGATG 60.181 47.826 0.00 0.00 0.00 2.90
1637 3769 3.019564 GCATAGCAGACCAAACCAAGAT 58.980 45.455 0.00 0.00 0.00 2.40
1653 3790 8.461222 TCATAATTCAGAACAAAGGTTGCATAG 58.539 33.333 0.00 0.00 37.36 2.23
1706 3843 4.754114 AGAGAAACATCTCTGCAAGTTCAC 59.246 41.667 7.53 0.00 44.63 3.18
1726 3920 6.348050 GCAGACAACCAAGAAATAGAACAGAG 60.348 42.308 0.00 0.00 0.00 3.35
1801 3995 1.581934 TCAGTTCGACCAACAAGCTG 58.418 50.000 0.00 0.00 37.48 4.24
1804 3998 6.632834 CAGTAATTTTCAGTTCGACCAACAAG 59.367 38.462 0.00 0.00 37.48 3.16
1867 4061 1.909376 ACCGAAAGATCATGTCGTCG 58.091 50.000 10.54 12.74 38.32 5.12
1868 4062 3.181520 CCAAACCGAAAGATCATGTCGTC 60.182 47.826 10.54 0.00 32.93 4.20
1922 4116 1.151172 GCCAAGTTGGTGCCGTTTTG 61.151 55.000 22.85 0.00 40.46 2.44
1941 4135 2.549754 CCTACAAATTGCATCTAGCCCG 59.450 50.000 0.00 0.00 44.83 6.13
1946 4140 7.136822 ACCAGATACCTACAAATTGCATCTA 57.863 36.000 0.00 0.00 0.00 1.98
1950 4144 5.417580 GGAAACCAGATACCTACAAATTGCA 59.582 40.000 0.00 0.00 0.00 4.08
1964 4158 3.698289 TCTCTCGTACAGGAAACCAGAT 58.302 45.455 0.00 0.00 0.00 2.90
1965 4159 3.150458 TCTCTCGTACAGGAAACCAGA 57.850 47.619 0.00 0.00 0.00 3.86
1979 4173 3.610669 CCCTGCCCCGATCTCTCG 61.611 72.222 0.00 0.00 44.62 4.04
1983 4177 4.804420 TCTGCCCTGCCCCGATCT 62.804 66.667 0.00 0.00 0.00 2.75
2002 4197 2.365293 GCTTGTTTTGGATCCCACAACT 59.635 45.455 9.90 0.00 42.62 3.16
2013 4208 4.954875 TCCTTGGTTTATGCTTGTTTTGG 58.045 39.130 0.00 0.00 0.00 3.28
2019 4214 5.467035 TTTTCCTCCTTGGTTTATGCTTG 57.533 39.130 0.00 0.00 37.07 4.01
2021 4216 5.779771 TCATTTTTCCTCCTTGGTTTATGCT 59.220 36.000 0.00 0.00 37.07 3.79
2022 4217 5.869344 GTCATTTTTCCTCCTTGGTTTATGC 59.131 40.000 0.00 0.00 37.07 3.14
2023 4218 6.014669 TGGTCATTTTTCCTCCTTGGTTTATG 60.015 38.462 0.00 0.00 37.07 1.90
2132 4329 8.665175 TGAATAAACTCGTAGTTAACTCGAAG 57.335 34.615 21.88 18.60 37.47 3.79
2170 4367 2.378038 ACACCAATGCAACTCACAAGT 58.622 42.857 0.00 0.00 37.32 3.16
2191 4388 8.907222 AACTCTGGTTTGCAAATATGATTTTT 57.093 26.923 16.21 0.12 30.55 1.94
2208 4408 3.306472 TTTTGTGGCCTAAACTCTGGT 57.694 42.857 3.32 0.00 0.00 4.00
2246 4448 4.579454 GGACACGTCCTATATGCAACTA 57.421 45.455 9.04 0.00 46.16 2.24
2292 4494 7.502226 AGGCCGTGAATGAAAGAAATATTATGA 59.498 33.333 0.00 0.00 0.00 2.15
2294 4496 7.040409 GGAGGCCGTGAATGAAAGAAATATTAT 60.040 37.037 0.00 0.00 0.00 1.28
2309 4511 0.035439 GATTCCAAGGAGGCCGTGAA 60.035 55.000 0.00 0.00 35.05 3.18
2310 4512 0.909610 AGATTCCAAGGAGGCCGTGA 60.910 55.000 0.00 0.00 35.05 4.35
2311 4513 0.830648 TAGATTCCAAGGAGGCCGTG 59.169 55.000 0.00 0.00 37.29 4.94
2312 4514 1.123928 CTAGATTCCAAGGAGGCCGT 58.876 55.000 0.00 0.00 37.29 5.68
2313 4515 0.394565 CCTAGATTCCAAGGAGGCCG 59.605 60.000 0.00 0.00 37.29 6.13
2314 4516 0.767998 CCCTAGATTCCAAGGAGGCC 59.232 60.000 0.00 0.00 37.29 5.19
2315 4517 1.807814 TCCCTAGATTCCAAGGAGGC 58.192 55.000 4.58 0.00 37.29 4.70
2316 4518 4.040755 TCTTTCCCTAGATTCCAAGGAGG 58.959 47.826 4.58 0.00 34.58 4.30
2317 4519 5.700402 TTCTTTCCCTAGATTCCAAGGAG 57.300 43.478 4.58 0.00 34.58 3.69
2318 4520 6.045577 ACTTTTCTTTCCCTAGATTCCAAGGA 59.954 38.462 4.58 0.00 34.58 3.36
2319 4521 6.249192 ACTTTTCTTTCCCTAGATTCCAAGG 58.751 40.000 0.00 0.00 0.00 3.61
2320 4522 7.309438 CCAACTTTTCTTTCCCTAGATTCCAAG 60.309 40.741 0.00 0.00 0.00 3.61
2321 4523 6.493458 CCAACTTTTCTTTCCCTAGATTCCAA 59.507 38.462 0.00 0.00 0.00 3.53
2322 4524 6.010219 CCAACTTTTCTTTCCCTAGATTCCA 58.990 40.000 0.00 0.00 0.00 3.53
2323 4525 6.010850 ACCAACTTTTCTTTCCCTAGATTCC 58.989 40.000 0.00 0.00 0.00 3.01
2324 4526 8.101419 TCTACCAACTTTTCTTTCCCTAGATTC 58.899 37.037 0.00 0.00 0.00 2.52
2325 4527 7.985589 TCTACCAACTTTTCTTTCCCTAGATT 58.014 34.615 0.00 0.00 0.00 2.40
2326 4528 7.569599 TCTACCAACTTTTCTTTCCCTAGAT 57.430 36.000 0.00 0.00 0.00 1.98
2327 4529 7.147444 TGTTCTACCAACTTTTCTTTCCCTAGA 60.147 37.037 0.00 0.00 0.00 2.43
2328 4530 6.996282 TGTTCTACCAACTTTTCTTTCCCTAG 59.004 38.462 0.00 0.00 0.00 3.02
2329 4531 6.902408 TGTTCTACCAACTTTTCTTTCCCTA 58.098 36.000 0.00 0.00 0.00 3.53
2330 4532 5.762279 TGTTCTACCAACTTTTCTTTCCCT 58.238 37.500 0.00 0.00 0.00 4.20
2331 4533 5.826208 TCTGTTCTACCAACTTTTCTTTCCC 59.174 40.000 0.00 0.00 0.00 3.97
2332 4534 6.317893 TGTCTGTTCTACCAACTTTTCTTTCC 59.682 38.462 0.00 0.00 0.00 3.13
2333 4535 7.148306 TGTGTCTGTTCTACCAACTTTTCTTTC 60.148 37.037 0.00 0.00 0.00 2.62
2334 4536 6.657541 TGTGTCTGTTCTACCAACTTTTCTTT 59.342 34.615 0.00 0.00 0.00 2.52
2335 4537 6.177610 TGTGTCTGTTCTACCAACTTTTCTT 58.822 36.000 0.00 0.00 0.00 2.52
2336 4538 5.741011 TGTGTCTGTTCTACCAACTTTTCT 58.259 37.500 0.00 0.00 0.00 2.52
2337 4539 6.255950 GTTGTGTCTGTTCTACCAACTTTTC 58.744 40.000 0.00 0.00 31.22 2.29
2338 4540 5.163794 CGTTGTGTCTGTTCTACCAACTTTT 60.164 40.000 0.00 0.00 31.47 2.27
2339 4541 4.331717 CGTTGTGTCTGTTCTACCAACTTT 59.668 41.667 0.00 0.00 31.47 2.66
2340 4542 3.869246 CGTTGTGTCTGTTCTACCAACTT 59.131 43.478 0.00 0.00 31.47 2.66
2341 4543 3.131577 TCGTTGTGTCTGTTCTACCAACT 59.868 43.478 0.00 0.00 31.47 3.16
2342 4544 3.450578 TCGTTGTGTCTGTTCTACCAAC 58.549 45.455 0.00 0.00 0.00 3.77
2343 4545 3.804786 TCGTTGTGTCTGTTCTACCAA 57.195 42.857 0.00 0.00 0.00 3.67
2344 4546 3.804786 TTCGTTGTGTCTGTTCTACCA 57.195 42.857 0.00 0.00 0.00 3.25
2345 4547 5.440685 CATTTTCGTTGTGTCTGTTCTACC 58.559 41.667 0.00 0.00 0.00 3.18
2346 4548 5.440685 CCATTTTCGTTGTGTCTGTTCTAC 58.559 41.667 0.00 0.00 0.00 2.59
2347 4549 4.024387 GCCATTTTCGTTGTGTCTGTTCTA 60.024 41.667 0.00 0.00 0.00 2.10
2348 4550 3.243068 GCCATTTTCGTTGTGTCTGTTCT 60.243 43.478 0.00 0.00 0.00 3.01
2349 4551 3.042887 GCCATTTTCGTTGTGTCTGTTC 58.957 45.455 0.00 0.00 0.00 3.18
2350 4552 2.540769 CGCCATTTTCGTTGTGTCTGTT 60.541 45.455 0.00 0.00 0.00 3.16
2351 4553 1.002900 CGCCATTTTCGTTGTGTCTGT 60.003 47.619 0.00 0.00 0.00 3.41
2352 4554 1.262950 TCGCCATTTTCGTTGTGTCTG 59.737 47.619 0.00 0.00 0.00 3.51
2353 4555 1.588674 TCGCCATTTTCGTTGTGTCT 58.411 45.000 0.00 0.00 0.00 3.41
2354 4556 2.611974 ATCGCCATTTTCGTTGTGTC 57.388 45.000 0.00 0.00 0.00 3.67
2355 4557 4.260620 GCTATATCGCCATTTTCGTTGTGT 60.261 41.667 0.00 0.00 0.00 3.72
2356 4558 4.211389 GCTATATCGCCATTTTCGTTGTG 58.789 43.478 0.00 0.00 0.00 3.33
2357 4559 4.468095 GCTATATCGCCATTTTCGTTGT 57.532 40.909 0.00 0.00 0.00 3.32
2384 4586 5.446143 TGTGTATCGCCATTTCTGTTTTT 57.554 34.783 0.00 0.00 0.00 1.94
2385 4587 5.446143 TTGTGTATCGCCATTTCTGTTTT 57.554 34.783 0.00 0.00 0.00 2.43
2386 4588 5.182950 TCATTGTGTATCGCCATTTCTGTTT 59.817 36.000 0.00 0.00 0.00 2.83
2387 4589 4.699735 TCATTGTGTATCGCCATTTCTGTT 59.300 37.500 0.00 0.00 0.00 3.16
2388 4590 4.260985 TCATTGTGTATCGCCATTTCTGT 58.739 39.130 0.00 0.00 0.00 3.41
2389 4591 4.571984 TCTCATTGTGTATCGCCATTTCTG 59.428 41.667 0.00 0.00 0.00 3.02
2390 4592 4.769688 TCTCATTGTGTATCGCCATTTCT 58.230 39.130 0.00 0.00 0.00 2.52
2391 4593 5.446709 CATCTCATTGTGTATCGCCATTTC 58.553 41.667 0.00 0.00 0.00 2.17
2392 4594 4.276678 CCATCTCATTGTGTATCGCCATTT 59.723 41.667 0.00 0.00 0.00 2.32
2393 4595 3.817084 CCATCTCATTGTGTATCGCCATT 59.183 43.478 0.00 0.00 0.00 3.16
2394 4596 3.405831 CCATCTCATTGTGTATCGCCAT 58.594 45.455 0.00 0.00 0.00 4.40
2395 4597 2.837498 CCATCTCATTGTGTATCGCCA 58.163 47.619 0.00 0.00 0.00 5.69
2396 4598 1.532868 GCCATCTCATTGTGTATCGCC 59.467 52.381 0.00 0.00 0.00 5.54
2397 4599 1.193203 CGCCATCTCATTGTGTATCGC 59.807 52.381 0.00 0.00 0.00 4.58
2398 4600 1.193203 GCGCCATCTCATTGTGTATCG 59.807 52.381 0.00 0.00 0.00 2.92
2399 4601 1.193203 CGCGCCATCTCATTGTGTATC 59.807 52.381 0.00 0.00 0.00 2.24
2400 4602 1.220529 CGCGCCATCTCATTGTGTAT 58.779 50.000 0.00 0.00 0.00 2.29
2401 4603 0.809636 CCGCGCCATCTCATTGTGTA 60.810 55.000 0.00 0.00 0.00 2.90
2402 4604 2.108514 CCGCGCCATCTCATTGTGT 61.109 57.895 0.00 0.00 0.00 3.72
2403 4605 2.711311 CCGCGCCATCTCATTGTG 59.289 61.111 0.00 0.00 0.00 3.33
2404 4606 3.204827 GCCGCGCCATCTCATTGT 61.205 61.111 0.00 0.00 0.00 2.71
2405 4607 4.303603 CGCCGCGCCATCTCATTG 62.304 66.667 0.00 0.00 0.00 2.82
2411 4613 4.961511 TATCACCGCCGCGCCATC 62.962 66.667 7.42 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.