Multiple sequence alignment - TraesCS7B01G394700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G394700 chr7B 100.000 2417 0 0 1 2417 662312473 662310057 0.000000e+00 4464.0
1 TraesCS7B01G394700 chr7B 89.041 803 64 12 705 1492 661998711 661999504 0.000000e+00 974.0
2 TraesCS7B01G394700 chr7B 89.182 795 65 16 712 1497 661716396 661717178 0.000000e+00 972.0
3 TraesCS7B01G394700 chr7B 91.010 723 52 7 709 1419 661468862 661469583 0.000000e+00 963.0
4 TraesCS7B01G394700 chr7B 87.171 873 66 23 752 1609 674194092 674194933 0.000000e+00 950.0
5 TraesCS7B01G394700 chr7B 90.896 670 49 8 755 1417 662010201 662009537 0.000000e+00 889.0
6 TraesCS7B01G394700 chr7B 91.729 133 11 0 1421 1553 661717570 661717702 4.100000e-43 185.0
7 TraesCS7B01G394700 chr7B 81.959 194 20 6 1721 1913 661914045 661914224 1.500000e-32 150.0
8 TraesCS7B01G394700 chr7B 88.889 99 10 1 1814 1911 661469653 661469751 1.170000e-23 121.0
9 TraesCS7B01G394700 chr7B 85.882 85 4 1 1734 1810 662000610 662000694 1.540000e-12 84.2
10 TraesCS7B01G394700 chr7D 87.649 923 71 24 705 1609 588472063 588471166 0.000000e+00 1033.0
11 TraesCS7B01G394700 chr7D 89.696 757 63 12 712 1461 596092595 596093343 0.000000e+00 952.0
12 TraesCS7B01G394700 chr7D 90.417 720 51 11 709 1419 588252752 588253462 0.000000e+00 931.0
13 TraesCS7B01G394700 chr7D 87.257 565 47 8 87 647 588472642 588472099 2.640000e-174 621.0
14 TraesCS7B01G394700 chr7D 91.892 111 7 1 1830 1938 588470814 588470704 1.160000e-33 154.0
15 TraesCS7B01G394700 chr7D 86.154 130 16 2 1814 1942 588253531 588253659 3.240000e-29 139.0
16 TraesCS7B01G394700 chr7A 92.210 706 47 5 752 1451 680244345 680245048 0.000000e+00 992.0
17 TraesCS7B01G394700 chr7A 90.761 736 39 13 705 1417 680264835 680264106 0.000000e+00 955.0
18 TraesCS7B01G394700 chr7A 89.987 749 58 11 752 1492 689252004 689252743 0.000000e+00 952.0
19 TraesCS7B01G394700 chr7A 94.949 396 19 1 1978 2373 108223469 108223075 9.490000e-174 619.0
20 TraesCS7B01G394700 chr7A 94.670 394 20 1 1980 2373 695106418 695106810 5.710000e-171 610.0
21 TraesCS7B01G394700 chr7A 90.307 423 39 2 87 509 680266073 680265653 9.760000e-154 553.0
22 TraesCS7B01G394700 chr7A 90.476 84 5 2 1528 1609 689252747 689252829 9.140000e-20 108.0
23 TraesCS7B01G394700 chr7A 85.263 95 5 7 1725 1810 680245569 680245663 3.310000e-14 89.8
24 TraesCS7B01G394700 chr3D 90.974 698 39 9 736 1428 455037656 455036978 0.000000e+00 918.0
25 TraesCS7B01G394700 chr3D 89.423 104 10 1 1814 1916 455036917 455036814 1.950000e-26 130.0
26 TraesCS7B01G394700 chr3B 81.236 874 89 33 711 1552 80659207 80658377 9.430000e-179 636.0
27 TraesCS7B01G394700 chr5D 93.909 394 22 2 1979 2372 468847046 468846655 5.750000e-166 593.0
28 TraesCS7B01G394700 chr2A 93.909 394 23 1 1979 2372 759761791 759762183 5.750000e-166 593.0
29 TraesCS7B01G394700 chr2A 93.655 394 24 1 1980 2373 392420616 392420224 2.680000e-164 588.0
30 TraesCS7B01G394700 chr2A 93.165 395 23 4 1979 2372 148077160 148077551 5.790000e-161 577.0
31 TraesCS7B01G394700 chr4A 93.671 395 22 3 1980 2373 67742520 67742128 2.680000e-164 588.0
32 TraesCS7B01G394700 chr1A 92.929 396 25 2 1979 2372 387519906 387519512 7.500000e-160 573.0
33 TraesCS7B01G394700 chr1B 92.695 397 27 2 1980 2375 582910521 582910916 2.700000e-159 571.0
34 TraesCS7B01G394700 chr1B 87.500 88 9 1 1524 1609 468218362 468218275 1.530000e-17 100.0
35 TraesCS7B01G394700 chr6B 88.636 88 8 1 1524 1609 637179888 637179975 3.290000e-19 106.0
36 TraesCS7B01G394700 chr3A 81.250 112 14 5 711 815 63569627 63569516 1.540000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G394700 chr7B 662310057 662312473 2416 True 4464.000000 4464 100.000000 1 2417 1 chr7B.!!$R2 2416
1 TraesCS7B01G394700 chr7B 674194092 674194933 841 False 950.000000 950 87.171000 752 1609 1 chr7B.!!$F2 857
2 TraesCS7B01G394700 chr7B 662009537 662010201 664 True 889.000000 889 90.896000 755 1417 1 chr7B.!!$R1 662
3 TraesCS7B01G394700 chr7B 661716396 661717702 1306 False 578.500000 972 90.455500 712 1553 2 chr7B.!!$F4 841
4 TraesCS7B01G394700 chr7B 661468862 661469751 889 False 542.000000 963 89.949500 709 1911 2 chr7B.!!$F3 1202
5 TraesCS7B01G394700 chr7B 661998711 662000694 1983 False 529.100000 974 87.461500 705 1810 2 chr7B.!!$F5 1105
6 TraesCS7B01G394700 chr7D 596092595 596093343 748 False 952.000000 952 89.696000 712 1461 1 chr7D.!!$F1 749
7 TraesCS7B01G394700 chr7D 588470704 588472642 1938 True 602.666667 1033 88.932667 87 1938 3 chr7D.!!$R1 1851
8 TraesCS7B01G394700 chr7D 588252752 588253659 907 False 535.000000 931 88.285500 709 1942 2 chr7D.!!$F2 1233
9 TraesCS7B01G394700 chr7A 680264106 680266073 1967 True 754.000000 955 90.534000 87 1417 2 chr7A.!!$R2 1330
10 TraesCS7B01G394700 chr7A 680244345 680245663 1318 False 540.900000 992 88.736500 752 1810 2 chr7A.!!$F2 1058
11 TraesCS7B01G394700 chr7A 689252004 689252829 825 False 530.000000 952 90.231500 752 1609 2 chr7A.!!$F3 857
12 TraesCS7B01G394700 chr3D 455036814 455037656 842 True 524.000000 918 90.198500 736 1916 2 chr3D.!!$R1 1180
13 TraesCS7B01G394700 chr3B 80658377 80659207 830 True 636.000000 636 81.236000 711 1552 1 chr3B.!!$R1 841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 415 0.26023 TCCTCTTCCATCCGAGAGCT 59.74 55.0 0.0 0.0 38.43 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 4417 0.039035 TTTGCTATCAAACGGGGCCT 59.961 50.0 0.84 0.0 37.28 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.579768 AAAAATATCAGCGTAATATTTGTGCAA 57.420 25.926 11.98 0.00 38.60 4.08
50 51 9.579768 AAAATATCAGCGTAATATTTGTGCAAA 57.420 25.926 11.98 0.00 38.60 3.68
51 52 9.748708 AAATATCAGCGTAATATTTGTGCAAAT 57.251 25.926 13.68 13.68 42.95 2.32
52 53 9.748708 AATATCAGCGTAATATTTGTGCAAATT 57.251 25.926 14.29 2.82 40.99 1.82
55 56 9.748708 ATCAGCGTAATATTTGTGCAAATTAAT 57.251 25.926 14.29 2.11 40.99 1.40
189 190 7.584123 GTGAATTGCATATTGTAGATGTCGTTC 59.416 37.037 0.00 0.00 0.00 3.95
333 334 2.678934 CCCGGTCGAACTCCTCCA 60.679 66.667 0.00 0.00 0.00 3.86
369 370 0.916358 CAACCACATCCCTCCCTCCT 60.916 60.000 0.00 0.00 0.00 3.69
411 412 1.686428 CCACTCCTCTTCCATCCGAGA 60.686 57.143 0.00 0.00 0.00 4.04
414 415 0.260230 TCCTCTTCCATCCGAGAGCT 59.740 55.000 0.00 0.00 38.43 4.09
422 423 0.725686 CATCCGAGAGCTGTGCAAAG 59.274 55.000 0.00 0.00 0.00 2.77
481 482 0.836400 CCCCCTACGCTCCATGGTAT 60.836 60.000 12.58 0.00 0.00 2.73
613 1265 3.164268 TGCATGCACAAAGTATTTCCCT 58.836 40.909 18.46 0.00 35.03 4.20
614 1266 3.577848 TGCATGCACAAAGTATTTCCCTT 59.422 39.130 18.46 0.00 35.03 3.95
620 1272 6.279882 TGCACAAAGTATTTCCCTTCAAAAG 58.720 36.000 0.00 0.00 35.03 2.27
629 1281 4.918810 TTCCCTTCAAAAGAGAGCAAAC 57.081 40.909 0.00 0.00 0.00 2.93
634 1286 4.336433 CCTTCAAAAGAGAGCAAACTGTCA 59.664 41.667 0.00 0.00 38.66 3.58
643 1295 4.936891 AGAGCAAACTGTCAATGGAAAAC 58.063 39.130 0.00 0.00 0.00 2.43
647 1299 5.754890 AGCAAACTGTCAATGGAAAACAATC 59.245 36.000 0.00 0.00 0.00 2.67
648 1300 5.754890 GCAAACTGTCAATGGAAAACAATCT 59.245 36.000 0.00 0.00 0.00 2.40
649 1301 6.258507 GCAAACTGTCAATGGAAAACAATCTT 59.741 34.615 0.00 0.00 0.00 2.40
650 1302 7.201635 GCAAACTGTCAATGGAAAACAATCTTT 60.202 33.333 0.00 0.00 0.00 2.52
651 1303 8.667463 CAAACTGTCAATGGAAAACAATCTTTT 58.333 29.630 0.00 0.00 0.00 2.27
652 1304 8.424274 AACTGTCAATGGAAAACAATCTTTTC 57.576 30.769 0.00 0.00 37.60 2.29
653 1305 7.785033 ACTGTCAATGGAAAACAATCTTTTCT 58.215 30.769 5.72 0.00 38.21 2.52
654 1306 8.260114 ACTGTCAATGGAAAACAATCTTTTCTT 58.740 29.630 5.72 0.00 38.21 2.52
655 1307 9.101655 CTGTCAATGGAAAACAATCTTTTCTTT 57.898 29.630 5.72 0.00 38.21 2.52
656 1308 9.447157 TGTCAATGGAAAACAATCTTTTCTTTT 57.553 25.926 5.72 0.00 38.21 2.27
657 1309 9.706846 GTCAATGGAAAACAATCTTTTCTTTTG 57.293 29.630 5.72 8.87 38.21 2.44
658 1310 9.664332 TCAATGGAAAACAATCTTTTCTTTTGA 57.336 25.926 13.56 13.56 38.21 2.69
672 1324 6.458232 TTTCTTTTGAAAGGTTCGATGGAA 57.542 33.333 3.83 0.00 42.84 3.53
673 1325 6.458232 TTCTTTTGAAAGGTTCGATGGAAA 57.542 33.333 3.83 0.00 36.67 3.13
674 1326 6.458232 TCTTTTGAAAGGTTCGATGGAAAA 57.542 33.333 3.83 0.00 36.67 2.29
675 1327 7.049799 TCTTTTGAAAGGTTCGATGGAAAAT 57.950 32.000 3.83 0.00 36.67 1.82
676 1328 8.172352 TCTTTTGAAAGGTTCGATGGAAAATA 57.828 30.769 3.83 0.00 36.67 1.40
695 1347 9.020813 GGAAAATAATCTAACTCAAAATTCCGC 57.979 33.333 0.00 0.00 0.00 5.54
696 1348 8.614994 AAAATAATCTAACTCAAAATTCCGCG 57.385 30.769 0.00 0.00 0.00 6.46
698 1350 1.735571 TCTAACTCAAAATTCCGCGCC 59.264 47.619 0.00 0.00 0.00 6.53
700 1352 1.175983 AACTCAAAATTCCGCGCCCA 61.176 50.000 0.00 0.00 0.00 5.36
701 1353 1.154035 CTCAAAATTCCGCGCCCAC 60.154 57.895 0.00 0.00 0.00 4.61
702 1354 2.126110 CAAAATTCCGCGCCCACC 60.126 61.111 0.00 0.00 0.00 4.61
703 1355 2.598985 AAAATTCCGCGCCCACCA 60.599 55.556 0.00 0.00 0.00 4.17
834 1507 4.566759 ACGGTTGTGATCGTATCAAATCAG 59.433 41.667 0.00 0.00 41.69 2.90
841 1515 3.710326 TCGTATCAAATCAGTCGAGGG 57.290 47.619 0.00 0.00 0.00 4.30
983 1705 2.610859 ACATCTCCCCGGCCAAGT 60.611 61.111 2.24 0.00 0.00 3.16
1083 1809 3.296709 GACCAAGGCCGAGAAGCGA 62.297 63.158 0.00 0.00 44.57 4.93
1329 2062 2.119886 GTCCAGGGAGATCCAGACG 58.880 63.158 0.47 0.00 38.24 4.18
1437 2566 4.326255 GGCTGTTCCCTGTCATGG 57.674 61.111 0.00 0.00 0.00 3.66
1492 2622 3.575630 TGTTCGTACTCTGTCATCTTGC 58.424 45.455 0.00 0.00 0.00 4.01
1498 2628 5.048294 TCGTACTCTGTCATCTTGCAACTTA 60.048 40.000 0.00 0.00 0.00 2.24
1499 2629 5.633601 CGTACTCTGTCATCTTGCAACTTAA 59.366 40.000 0.00 0.00 0.00 1.85
1503 2633 4.214119 TCTGTCATCTTGCAACTTAAGTGC 59.786 41.667 9.34 14.72 0.00 4.40
1505 2635 4.023792 TGTCATCTTGCAACTTAAGTGCTG 60.024 41.667 22.16 14.40 0.00 4.41
1506 2636 3.503363 TCATCTTGCAACTTAAGTGCTGG 59.497 43.478 22.16 16.66 0.00 4.85
1509 2639 0.953727 TGCAACTTAAGTGCTGGCTG 59.046 50.000 22.16 12.69 0.00 4.85
1510 2640 0.954452 GCAACTTAAGTGCTGGCTGT 59.046 50.000 9.34 0.00 0.00 4.40
1511 2641 1.335324 GCAACTTAAGTGCTGGCTGTG 60.335 52.381 9.34 2.07 0.00 3.66
1512 2642 1.949525 CAACTTAAGTGCTGGCTGTGT 59.050 47.619 9.34 0.00 0.00 3.72
1513 2643 1.597742 ACTTAAGTGCTGGCTGTGTG 58.402 50.000 7.48 0.00 0.00 3.82
1514 2644 1.134098 ACTTAAGTGCTGGCTGTGTGT 60.134 47.619 7.48 0.00 0.00 3.72
1515 2645 1.532868 CTTAAGTGCTGGCTGTGTGTC 59.467 52.381 0.00 0.00 0.00 3.67
1516 2646 0.250295 TAAGTGCTGGCTGTGTGTCC 60.250 55.000 0.00 0.00 0.00 4.02
1517 2647 1.987807 AAGTGCTGGCTGTGTGTCCT 61.988 55.000 0.00 0.00 0.00 3.85
1575 3489 6.441274 ACAGTGCTGATTTATTGTGTCTTTG 58.559 36.000 6.17 0.00 0.00 2.77
1576 3490 6.262944 ACAGTGCTGATTTATTGTGTCTTTGA 59.737 34.615 6.17 0.00 0.00 2.69
1577 3491 6.580041 CAGTGCTGATTTATTGTGTCTTTGAC 59.420 38.462 0.00 0.00 0.00 3.18
1594 3515 7.041848 TGTCTTTGACTGTATCATGTTCAGTTG 60.042 37.037 16.32 10.30 41.58 3.16
1609 3530 4.927267 TCAGTTGTTACCATGATCCCTT 57.073 40.909 0.00 0.00 0.00 3.95
1610 3531 4.588899 TCAGTTGTTACCATGATCCCTTG 58.411 43.478 0.00 0.00 0.00 3.61
1611 3532 3.129287 CAGTTGTTACCATGATCCCTTGC 59.871 47.826 0.00 0.00 0.00 4.01
1613 3534 4.227300 AGTTGTTACCATGATCCCTTGCTA 59.773 41.667 0.00 0.00 0.00 3.49
1615 3554 4.717877 TGTTACCATGATCCCTTGCTATG 58.282 43.478 0.00 0.00 0.00 2.23
1622 3561 2.039480 TGATCCCTTGCTATGATCCTGC 59.961 50.000 0.00 0.00 35.18 4.85
1629 3568 2.635714 TGCTATGATCCTGCTTGTGTG 58.364 47.619 0.00 0.00 0.00 3.82
1635 3574 2.880268 TGATCCTGCTTGTGTGACTTTG 59.120 45.455 0.00 0.00 0.00 2.77
1636 3575 2.418368 TCCTGCTTGTGTGACTTTGT 57.582 45.000 0.00 0.00 0.00 2.83
1637 3576 2.288666 TCCTGCTTGTGTGACTTTGTC 58.711 47.619 0.00 0.00 0.00 3.18
1642 3581 2.796032 GCTTGTGTGACTTTGTCCTTGC 60.796 50.000 0.00 0.00 0.00 4.01
1644 3583 3.552132 TGTGTGACTTTGTCCTTGCTA 57.448 42.857 0.00 0.00 0.00 3.49
1645 3584 4.085357 TGTGTGACTTTGTCCTTGCTAT 57.915 40.909 0.00 0.00 0.00 2.97
1646 3585 3.814842 TGTGTGACTTTGTCCTTGCTATG 59.185 43.478 0.00 0.00 0.00 2.23
1647 3586 3.189287 GTGTGACTTTGTCCTTGCTATGG 59.811 47.826 0.00 0.00 0.00 2.74
1648 3587 3.181445 TGTGACTTTGTCCTTGCTATGGT 60.181 43.478 0.00 0.00 0.00 3.55
1649 3588 3.437049 GTGACTTTGTCCTTGCTATGGTC 59.563 47.826 0.00 0.00 0.00 4.02
1655 3655 1.204941 GTCCTTGCTATGGTCGTCTGT 59.795 52.381 0.00 0.00 0.00 3.41
1658 3658 2.481449 CCTTGCTATGGTCGTCTGTACC 60.481 54.545 0.00 0.00 37.53 3.34
1663 3663 0.246635 ATGGTCGTCTGTACCTGCAC 59.753 55.000 0.00 0.00 37.91 4.57
1690 3690 8.778358 AGATGTTTCTCTGTTACATTTCAGAAC 58.222 33.333 0.00 0.00 39.67 3.01
1691 3691 7.857734 TGTTTCTCTGTTACATTTCAGAACA 57.142 32.000 0.00 0.00 39.67 3.18
1692 3692 7.693952 TGTTTCTCTGTTACATTTCAGAACAC 58.306 34.615 0.00 0.00 39.67 3.32
1693 3693 7.552687 TGTTTCTCTGTTACATTTCAGAACACT 59.447 33.333 0.00 0.00 39.67 3.55
1694 3694 8.398665 GTTTCTCTGTTACATTTCAGAACACTT 58.601 33.333 0.00 0.00 39.67 3.16
1695 3695 8.506168 TTCTCTGTTACATTTCAGAACACTTT 57.494 30.769 0.00 0.00 39.67 2.66
1696 3696 8.142994 TCTCTGTTACATTTCAGAACACTTTC 57.857 34.615 0.00 0.00 39.67 2.62
1697 3697 7.226720 TCTCTGTTACATTTCAGAACACTTTCC 59.773 37.037 0.00 0.00 39.67 3.13
1698 3698 6.826231 TCTGTTACATTTCAGAACACTTTCCA 59.174 34.615 0.00 0.00 37.69 3.53
1699 3699 7.338196 TCTGTTACATTTCAGAACACTTTCCAA 59.662 33.333 0.00 0.00 37.69 3.53
1701 3701 4.920376 ACATTTCAGAACACTTTCCAACG 58.080 39.130 0.00 0.00 31.28 4.10
1703 3703 4.875544 TTTCAGAACACTTTCCAACGAG 57.124 40.909 0.00 0.00 31.28 4.18
1704 3704 2.210116 TCAGAACACTTTCCAACGAGC 58.790 47.619 0.00 0.00 31.28 5.03
1706 3706 1.940613 AGAACACTTTCCAACGAGCAC 59.059 47.619 0.00 0.00 31.28 4.40
1707 3707 1.940613 GAACACTTTCCAACGAGCACT 59.059 47.619 0.00 0.00 0.00 4.40
1709 3709 0.040958 CACTTTCCAACGAGCACTGC 60.041 55.000 0.00 0.00 0.00 4.40
1710 3710 1.166531 ACTTTCCAACGAGCACTGCC 61.167 55.000 0.00 0.00 0.00 4.85
1711 3711 1.153066 TTTCCAACGAGCACTGCCA 60.153 52.632 0.00 0.00 0.00 4.92
1730 3826 4.148825 GGTGAGGCGGCGTCAGAT 62.149 66.667 24.06 0.00 0.00 2.90
1731 3827 2.887568 GTGAGGCGGCGTCAGATG 60.888 66.667 24.06 0.00 0.00 2.90
1732 3828 3.068064 TGAGGCGGCGTCAGATGA 61.068 61.111 20.30 0.00 0.00 2.92
1767 3881 8.703604 TTTCTTCAGACATAAATCTAGGTTCG 57.296 34.615 0.00 0.00 0.00 3.95
1795 3917 3.330701 TCCTAATGCTGTTCCCTGTCTTT 59.669 43.478 0.00 0.00 0.00 2.52
1803 3925 4.279420 GCTGTTCCCTGTCTTTTCAGAATT 59.721 41.667 0.00 0.00 37.61 2.17
1810 3932 9.635404 TTCCCTGTCTTTTCAGAATTTAGTTAA 57.365 29.630 0.00 0.00 37.61 2.01
1811 3933 9.635404 TCCCTGTCTTTTCAGAATTTAGTTAAA 57.365 29.630 0.00 0.00 37.61 1.52
1848 3970 9.391006 GTTCAGGATACACCATCTTGTAATTTA 57.609 33.333 0.00 0.00 40.67 1.40
1917 4041 4.560108 GCTTTGATCTGTTTCATGCCTGTT 60.560 41.667 0.00 0.00 0.00 3.16
1920 4044 5.125100 TGATCTGTTTCATGCCTGTTTTC 57.875 39.130 0.00 0.00 0.00 2.29
1929 4053 1.159285 TGCCTGTTTTCTCATGCTCG 58.841 50.000 0.00 0.00 31.94 5.03
1944 4382 3.667497 TGCTCGATCCTTACCATGATC 57.333 47.619 0.00 0.00 35.19 2.92
1953 4391 4.047166 TCCTTACCATGATCATCCCTGTT 58.953 43.478 4.86 0.00 0.00 3.16
1954 4392 4.139786 CCTTACCATGATCATCCCTGTTG 58.860 47.826 4.86 0.00 0.00 3.33
1955 4393 4.141413 CCTTACCATGATCATCCCTGTTGA 60.141 45.833 4.86 0.00 0.00 3.18
1956 4394 5.457197 CCTTACCATGATCATCCCTGTTGAT 60.457 44.000 4.86 0.00 36.54 2.57
1957 4395 4.531357 ACCATGATCATCCCTGTTGATT 57.469 40.909 4.86 0.00 34.03 2.57
1958 4396 5.651612 ACCATGATCATCCCTGTTGATTA 57.348 39.130 4.86 0.00 34.03 1.75
1959 4397 6.210172 ACCATGATCATCCCTGTTGATTAT 57.790 37.500 4.86 0.00 34.03 1.28
1960 4398 6.243900 ACCATGATCATCCCTGTTGATTATC 58.756 40.000 4.86 0.00 34.03 1.75
1961 4399 6.045224 ACCATGATCATCCCTGTTGATTATCT 59.955 38.462 4.86 0.00 34.03 1.98
1962 4400 6.598457 CCATGATCATCCCTGTTGATTATCTC 59.402 42.308 4.86 0.00 34.03 2.75
1963 4401 7.395617 CATGATCATCCCTGTTGATTATCTCT 58.604 38.462 4.86 0.00 34.03 3.10
1964 4402 6.766429 TGATCATCCCTGTTGATTATCTCTG 58.234 40.000 0.00 0.00 34.03 3.35
1966 4404 6.566079 TCATCCCTGTTGATTATCTCTGTT 57.434 37.500 0.00 0.00 0.00 3.16
1967 4405 6.351711 TCATCCCTGTTGATTATCTCTGTTG 58.648 40.000 0.00 0.00 0.00 3.33
1970 4408 6.962182 TCCCTGTTGATTATCTCTGTTGATT 58.038 36.000 0.00 0.00 0.00 2.57
1971 4409 8.089625 TCCCTGTTGATTATCTCTGTTGATTA 57.910 34.615 0.00 0.00 0.00 1.75
1972 4410 7.987458 TCCCTGTTGATTATCTCTGTTGATTAC 59.013 37.037 0.00 0.00 0.00 1.89
1973 4411 7.770433 CCCTGTTGATTATCTCTGTTGATTACA 59.230 37.037 0.00 0.00 34.95 2.41
1974 4412 9.166173 CCTGTTGATTATCTCTGTTGATTACAA 57.834 33.333 0.00 0.00 36.02 2.41
1976 4414 9.166173 TGTTGATTATCTCTGTTGATTACAAGG 57.834 33.333 0.00 0.00 36.02 3.61
1977 4415 7.792374 TGATTATCTCTGTTGATTACAAGGC 57.208 36.000 0.00 0.00 36.02 4.35
1978 4416 7.568349 TGATTATCTCTGTTGATTACAAGGCT 58.432 34.615 0.00 0.00 36.02 4.58
1979 4417 8.704668 TGATTATCTCTGTTGATTACAAGGCTA 58.295 33.333 0.00 0.00 36.02 3.93
1980 4418 9.202273 GATTATCTCTGTTGATTACAAGGCTAG 57.798 37.037 0.00 0.00 36.02 3.42
1981 4419 5.344743 TCTCTGTTGATTACAAGGCTAGG 57.655 43.478 0.00 0.00 36.02 3.02
1982 4420 3.873910 TCTGTTGATTACAAGGCTAGGC 58.126 45.455 8.55 8.55 36.02 3.93
1983 4421 2.945668 CTGTTGATTACAAGGCTAGGCC 59.054 50.000 13.55 0.00 39.84 5.19
1984 4422 4.243635 CTGTTGATTACAAGGCTAGGCCC 61.244 52.174 13.55 0.00 40.16 5.80
1992 4430 2.595655 GGCTAGGCCCCGTTTGAT 59.404 61.111 4.61 0.00 44.06 2.57
1993 4431 1.834301 GGCTAGGCCCCGTTTGATA 59.166 57.895 4.61 0.00 44.06 2.15
1994 4432 0.250338 GGCTAGGCCCCGTTTGATAG 60.250 60.000 4.61 0.00 44.06 2.08
1995 4433 0.885150 GCTAGGCCCCGTTTGATAGC 60.885 60.000 0.00 0.00 0.00 2.97
1996 4434 0.468226 CTAGGCCCCGTTTGATAGCA 59.532 55.000 0.00 0.00 0.00 3.49
1997 4435 0.913205 TAGGCCCCGTTTGATAGCAA 59.087 50.000 0.00 0.00 0.00 3.91
1998 4436 0.039035 AGGCCCCGTTTGATAGCAAA 59.961 50.000 1.13 1.13 41.47 3.68
1999 4437 0.455815 GGCCCCGTTTGATAGCAAAG 59.544 55.000 6.36 1.51 44.12 2.77
2000 4438 1.173913 GCCCCGTTTGATAGCAAAGT 58.826 50.000 6.36 0.00 44.12 2.66
2001 4439 2.361789 GCCCCGTTTGATAGCAAAGTA 58.638 47.619 6.36 0.00 44.12 2.24
2002 4440 2.949644 GCCCCGTTTGATAGCAAAGTAT 59.050 45.455 6.36 0.00 44.12 2.12
2003 4441 3.380320 GCCCCGTTTGATAGCAAAGTATT 59.620 43.478 6.36 0.00 44.12 1.89
2004 4442 4.142249 GCCCCGTTTGATAGCAAAGTATTT 60.142 41.667 6.36 0.00 44.12 1.40
2005 4443 5.623596 GCCCCGTTTGATAGCAAAGTATTTT 60.624 40.000 6.36 0.00 44.12 1.82
2006 4444 6.394809 CCCCGTTTGATAGCAAAGTATTTTT 58.605 36.000 6.36 0.00 44.12 1.94
2043 4481 8.045176 AGAATACTGCAGTTTTTGAGATTACC 57.955 34.615 27.06 7.95 0.00 2.85
2044 4482 7.665559 AGAATACTGCAGTTTTTGAGATTACCA 59.334 33.333 27.06 1.00 0.00 3.25
2045 4483 7.944729 ATACTGCAGTTTTTGAGATTACCAT 57.055 32.000 27.06 3.75 0.00 3.55
2046 4484 9.461312 AATACTGCAGTTTTTGAGATTACCATA 57.539 29.630 27.06 0.00 0.00 2.74
2047 4485 7.383102 ACTGCAGTTTTTGAGATTACCATAG 57.617 36.000 15.25 0.00 0.00 2.23
2048 4486 6.942576 ACTGCAGTTTTTGAGATTACCATAGT 59.057 34.615 15.25 0.00 0.00 2.12
2049 4487 7.448469 ACTGCAGTTTTTGAGATTACCATAGTT 59.552 33.333 15.25 0.00 0.00 2.24
2050 4488 8.177119 TGCAGTTTTTGAGATTACCATAGTTT 57.823 30.769 0.00 0.00 0.00 2.66
2051 4489 8.637986 TGCAGTTTTTGAGATTACCATAGTTTT 58.362 29.630 0.00 0.00 0.00 2.43
2075 4513 6.843069 ATTTACAATGAGTTGTTTGGTTGC 57.157 33.333 0.00 0.00 46.07 4.17
2076 4514 3.177997 ACAATGAGTTGTTTGGTTGCC 57.822 42.857 0.00 0.00 46.07 4.52
2077 4515 2.158971 ACAATGAGTTGTTTGGTTGCCC 60.159 45.455 0.00 0.00 46.07 5.36
2078 4516 1.047801 ATGAGTTGTTTGGTTGCCCC 58.952 50.000 0.00 0.00 0.00 5.80
2081 4519 2.312390 GAGTTGTTTGGTTGCCCCTAA 58.688 47.619 0.00 0.00 0.00 2.69
2082 4520 2.035449 GAGTTGTTTGGTTGCCCCTAAC 59.965 50.000 9.04 9.04 45.71 2.34
2085 4523 3.818295 TGTTTGGTTGCCCCTAACTAT 57.182 42.857 14.58 0.00 45.71 2.12
2087 4525 3.829601 TGTTTGGTTGCCCCTAACTATTG 59.170 43.478 14.58 0.00 45.71 1.90
2092 4530 3.089284 GTTGCCCCTAACTATTGTGCTT 58.911 45.455 0.00 0.00 0.00 3.91
2095 4533 4.924625 TGCCCCTAACTATTGTGCTTTTA 58.075 39.130 0.00 0.00 0.00 1.52
2096 4534 5.326069 TGCCCCTAACTATTGTGCTTTTAA 58.674 37.500 0.00 0.00 0.00 1.52
2101 4539 8.621286 CCCCTAACTATTGTGCTTTTAATACTG 58.379 37.037 0.00 0.00 0.00 2.74
2119 4557 6.910536 ATACTGTAGTATTGAGCAAACTGC 57.089 37.500 0.00 0.00 39.83 4.40
2120 4558 6.406370 ATACTGTAGTATTGAGCAAACTGCA 58.594 36.000 0.89 12.00 41.06 4.41
2161 4599 5.772393 AAAAAGAACCCCAAACCTCTTTT 57.228 34.783 3.44 3.44 45.46 2.27
2162 4600 5.772393 AAAAGAACCCCAAACCTCTTTTT 57.228 34.783 3.44 0.00 42.57 1.94
2190 4628 2.847327 AGAGCTGCTGAGTGCTTAAA 57.153 45.000 7.01 0.00 43.37 1.52
2191 4629 2.421619 AGAGCTGCTGAGTGCTTAAAC 58.578 47.619 7.01 0.00 43.37 2.01
2192 4630 2.146342 GAGCTGCTGAGTGCTTAAACA 58.854 47.619 7.01 0.00 43.37 2.83
2193 4631 1.876156 AGCTGCTGAGTGCTTAAACAC 59.124 47.619 0.00 0.54 43.37 3.32
2194 4632 1.603802 GCTGCTGAGTGCTTAAACACA 59.396 47.619 11.39 0.00 43.23 3.72
2195 4633 2.033299 GCTGCTGAGTGCTTAAACACAA 59.967 45.455 11.39 0.00 43.23 3.33
2196 4634 3.621794 CTGCTGAGTGCTTAAACACAAC 58.378 45.455 11.39 5.71 43.23 3.32
2197 4635 2.031560 TGCTGAGTGCTTAAACACAACG 59.968 45.455 11.39 0.52 43.23 4.10
2198 4636 2.602217 GCTGAGTGCTTAAACACAACGG 60.602 50.000 11.39 10.14 43.23 4.44
2199 4637 1.332375 TGAGTGCTTAAACACAACGGC 59.668 47.619 11.39 0.00 43.23 5.68
2200 4638 1.602377 GAGTGCTTAAACACAACGGCT 59.398 47.619 11.39 0.00 43.23 5.52
2201 4639 2.803956 GAGTGCTTAAACACAACGGCTA 59.196 45.455 11.39 0.00 43.23 3.93
2202 4640 3.207778 AGTGCTTAAACACAACGGCTAA 58.792 40.909 11.39 0.00 43.23 3.09
2203 4641 3.628487 AGTGCTTAAACACAACGGCTAAA 59.372 39.130 11.39 0.00 43.23 1.85
2204 4642 3.727227 GTGCTTAAACACAACGGCTAAAC 59.273 43.478 4.12 0.00 40.40 2.01
2205 4643 3.377485 TGCTTAAACACAACGGCTAAACA 59.623 39.130 0.00 0.00 0.00 2.83
2206 4644 3.972502 GCTTAAACACAACGGCTAAACAG 59.027 43.478 0.00 0.00 0.00 3.16
2207 4645 2.485266 AAACACAACGGCTAAACAGC 57.515 45.000 0.00 0.00 0.00 4.40
2208 4646 1.384525 AACACAACGGCTAAACAGCA 58.615 45.000 0.00 0.00 36.33 4.41
2209 4647 1.384525 ACACAACGGCTAAACAGCAA 58.615 45.000 0.00 0.00 36.33 3.91
2210 4648 1.746220 ACACAACGGCTAAACAGCAAA 59.254 42.857 0.00 0.00 36.33 3.68
2211 4649 2.164624 ACACAACGGCTAAACAGCAAAA 59.835 40.909 0.00 0.00 36.33 2.44
2212 4650 3.181480 ACACAACGGCTAAACAGCAAAAT 60.181 39.130 0.00 0.00 36.33 1.82
2213 4651 3.801594 CACAACGGCTAAACAGCAAAATT 59.198 39.130 0.00 0.00 36.33 1.82
2214 4652 4.269844 CACAACGGCTAAACAGCAAAATTT 59.730 37.500 0.00 0.00 36.33 1.82
2215 4653 5.460419 CACAACGGCTAAACAGCAAAATTTA 59.540 36.000 0.00 0.00 36.33 1.40
2216 4654 5.460748 ACAACGGCTAAACAGCAAAATTTAC 59.539 36.000 0.00 0.00 36.33 2.01
2217 4655 5.189659 ACGGCTAAACAGCAAAATTTACA 57.810 34.783 0.00 0.00 36.33 2.41
2218 4656 5.219633 ACGGCTAAACAGCAAAATTTACAG 58.780 37.500 0.00 0.00 36.33 2.74
2219 4657 4.089923 CGGCTAAACAGCAAAATTTACAGC 59.910 41.667 0.00 0.00 36.33 4.40
2220 4658 4.089923 GGCTAAACAGCAAAATTTACAGCG 59.910 41.667 0.00 0.00 36.33 5.18
2221 4659 4.679654 GCTAAACAGCAAAATTTACAGCGT 59.320 37.500 0.00 0.00 34.41 5.07
2222 4660 5.174943 GCTAAACAGCAAAATTTACAGCGTT 59.825 36.000 0.00 3.55 34.41 4.84
2223 4661 6.361214 GCTAAACAGCAAAATTTACAGCGTTA 59.639 34.615 14.26 9.70 34.41 3.18
2224 4662 7.061789 GCTAAACAGCAAAATTTACAGCGTTAT 59.938 33.333 14.26 10.34 34.41 1.89
2225 4663 6.689178 AACAGCAAAATTTACAGCGTTATG 57.311 33.333 13.23 6.92 0.00 1.90
2226 4664 4.621034 ACAGCAAAATTTACAGCGTTATGC 59.379 37.500 0.00 0.00 46.98 3.14
2235 4673 4.342964 GCGTTATGCGACAACAGC 57.657 55.556 0.00 0.00 44.77 4.40
2236 4674 1.226018 GCGTTATGCGACAACAGCC 60.226 57.895 0.00 0.00 44.77 4.85
2237 4675 1.906994 GCGTTATGCGACAACAGCCA 61.907 55.000 0.00 0.00 44.77 4.75
2238 4676 0.515127 CGTTATGCGACAACAGCCAA 59.485 50.000 0.00 0.00 44.77 4.52
2239 4677 1.069568 CGTTATGCGACAACAGCCAAA 60.070 47.619 0.00 0.00 44.77 3.28
2240 4678 2.315901 GTTATGCGACAACAGCCAAAC 58.684 47.619 0.00 0.00 0.00 2.93
2241 4679 1.598882 TATGCGACAACAGCCAAACA 58.401 45.000 0.00 0.00 0.00 2.83
2242 4680 0.743688 ATGCGACAACAGCCAAACAA 59.256 45.000 0.00 0.00 0.00 2.83
2243 4681 0.100325 TGCGACAACAGCCAAACAAG 59.900 50.000 0.00 0.00 0.00 3.16
2244 4682 0.100503 GCGACAACAGCCAAACAAGT 59.899 50.000 0.00 0.00 0.00 3.16
2245 4683 1.469079 GCGACAACAGCCAAACAAGTT 60.469 47.619 0.00 0.00 0.00 2.66
2246 4684 2.450160 CGACAACAGCCAAACAAGTTC 58.550 47.619 0.00 0.00 0.00 3.01
2247 4685 2.097466 CGACAACAGCCAAACAAGTTCT 59.903 45.455 0.00 0.00 0.00 3.01
2248 4686 3.311322 CGACAACAGCCAAACAAGTTCTA 59.689 43.478 0.00 0.00 0.00 2.10
2249 4687 4.024048 CGACAACAGCCAAACAAGTTCTAT 60.024 41.667 0.00 0.00 0.00 1.98
2250 4688 5.186996 ACAACAGCCAAACAAGTTCTATG 57.813 39.130 0.00 0.00 0.00 2.23
2251 4689 4.644685 ACAACAGCCAAACAAGTTCTATGT 59.355 37.500 0.00 0.00 0.00 2.29
2252 4690 5.825679 ACAACAGCCAAACAAGTTCTATGTA 59.174 36.000 0.00 0.00 0.00 2.29
2253 4691 6.490040 ACAACAGCCAAACAAGTTCTATGTAT 59.510 34.615 0.00 0.00 0.00 2.29
2254 4692 7.014230 ACAACAGCCAAACAAGTTCTATGTATT 59.986 33.333 0.00 0.00 0.00 1.89
2255 4693 6.913170 ACAGCCAAACAAGTTCTATGTATTG 58.087 36.000 0.00 0.00 0.00 1.90
2256 4694 6.490040 ACAGCCAAACAAGTTCTATGTATTGT 59.510 34.615 0.00 0.00 37.47 2.71
2257 4695 6.803320 CAGCCAAACAAGTTCTATGTATTGTG 59.197 38.462 0.00 0.00 36.09 3.33
2258 4696 6.714810 AGCCAAACAAGTTCTATGTATTGTGA 59.285 34.615 0.00 0.00 36.09 3.58
2259 4697 7.230510 AGCCAAACAAGTTCTATGTATTGTGAA 59.769 33.333 0.00 0.00 36.09 3.18
2260 4698 8.028938 GCCAAACAAGTTCTATGTATTGTGAAT 58.971 33.333 0.00 0.00 36.09 2.57
2321 4759 9.950496 ATCTCATACCTATAGGCAAAATTACTG 57.050 33.333 19.25 0.00 39.32 2.74
2322 4760 8.934697 TCTCATACCTATAGGCAAAATTACTGT 58.065 33.333 19.25 0.00 39.32 3.55
2325 4763 9.998106 CATACCTATAGGCAAAATTACTGTAGT 57.002 33.333 19.25 0.00 39.32 2.73
2328 4766 9.392259 ACCTATAGGCAAAATTACTGTAGTTTC 57.608 33.333 19.25 0.00 39.32 2.78
2329 4767 9.614792 CCTATAGGCAAAATTACTGTAGTTTCT 57.385 33.333 5.67 5.20 0.00 2.52
2332 4770 9.686683 ATAGGCAAAATTACTGTAGTTTCTGAT 57.313 29.630 8.48 5.63 0.00 2.90
2334 4772 8.947115 AGGCAAAATTACTGTAGTTTCTGATAC 58.053 33.333 8.48 0.00 0.00 2.24
2335 4773 8.947115 GGCAAAATTACTGTAGTTTCTGATACT 58.053 33.333 8.48 6.06 0.00 2.12
2342 4780 9.841295 TTACTGTAGTTTCTGATACTTTGGTTT 57.159 29.630 6.09 0.00 0.00 3.27
2371 4809 9.799106 ATAATACTTTGCTATCAAACATAGCCT 57.201 29.630 10.40 0.00 44.66 4.58
2373 4811 8.839310 ATACTTTGCTATCAAACATAGCCTAG 57.161 34.615 10.40 9.64 44.66 3.02
2374 4812 6.889198 ACTTTGCTATCAAACATAGCCTAGA 58.111 36.000 10.40 0.00 44.66 2.43
2375 4813 6.763610 ACTTTGCTATCAAACATAGCCTAGAC 59.236 38.462 10.40 0.00 44.66 2.59
2376 4814 5.869649 TGCTATCAAACATAGCCTAGACA 57.130 39.130 10.40 0.00 44.66 3.41
2377 4815 5.847304 TGCTATCAAACATAGCCTAGACAG 58.153 41.667 10.40 0.00 44.66 3.51
2378 4816 5.221521 TGCTATCAAACATAGCCTAGACAGG 60.222 44.000 10.40 0.00 44.66 4.00
2389 4827 2.972625 CCTAGACAGGCACGATTTTCA 58.027 47.619 0.00 0.00 34.35 2.69
2390 4828 2.932614 CCTAGACAGGCACGATTTTCAG 59.067 50.000 0.00 0.00 34.35 3.02
2391 4829 1.160137 AGACAGGCACGATTTTCAGC 58.840 50.000 0.00 0.00 0.00 4.26
2392 4830 0.874390 GACAGGCACGATTTTCAGCA 59.126 50.000 0.00 0.00 0.00 4.41
2393 4831 1.266718 GACAGGCACGATTTTCAGCAA 59.733 47.619 0.00 0.00 0.00 3.91
2394 4832 1.888512 ACAGGCACGATTTTCAGCAAT 59.111 42.857 0.00 0.00 0.00 3.56
2395 4833 2.297033 ACAGGCACGATTTTCAGCAATT 59.703 40.909 0.00 0.00 0.00 2.32
2396 4834 3.243839 ACAGGCACGATTTTCAGCAATTT 60.244 39.130 0.00 0.00 0.00 1.82
2397 4835 3.742369 CAGGCACGATTTTCAGCAATTTT 59.258 39.130 0.00 0.00 0.00 1.82
2398 4836 3.742369 AGGCACGATTTTCAGCAATTTTG 59.258 39.130 0.00 0.00 0.00 2.44
2408 4846 4.659480 CAATTTTGCACTGCGCCT 57.341 50.000 4.18 0.00 41.33 5.52
2409 4847 2.437850 CAATTTTGCACTGCGCCTC 58.562 52.632 4.18 0.00 41.33 4.70
2410 4848 1.081242 AATTTTGCACTGCGCCTCG 60.081 52.632 4.18 0.00 41.33 4.63
2411 4849 2.476534 AATTTTGCACTGCGCCTCGG 62.477 55.000 4.18 0.00 41.33 4.63
2412 4850 4.927782 TTTGCACTGCGCCTCGGT 62.928 61.111 4.18 0.00 41.33 4.69
2413 4851 4.927782 TTGCACTGCGCCTCGGTT 62.928 61.111 4.18 0.00 41.33 4.44
2414 4852 4.927782 TGCACTGCGCCTCGGTTT 62.928 61.111 4.18 0.00 41.33 3.27
2415 4853 3.660111 GCACTGCGCCTCGGTTTT 61.660 61.111 4.18 0.00 30.14 2.43
2416 4854 2.556287 CACTGCGCCTCGGTTTTC 59.444 61.111 4.18 0.00 30.14 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.579768 TTGCACAAATATTACGCTGATATTTTT 57.420 25.926 7.93 2.04 37.50 1.94
24 25 9.579768 TTTGCACAAATATTACGCTGATATTTT 57.420 25.926 7.93 1.23 37.50 1.82
25 26 9.748708 ATTTGCACAAATATTACGCTGATATTT 57.251 25.926 6.82 5.78 39.08 1.40
26 27 9.748708 AATTTGCACAAATATTACGCTGATATT 57.251 25.926 8.92 0.00 39.88 1.28
29 30 9.748708 ATTAATTTGCACAAATATTACGCTGAT 57.251 25.926 8.92 0.00 39.88 2.90
76 77 9.771915 CAACAATACAAAAACAAGCTGATTTTT 57.228 25.926 12.82 12.82 38.28 1.94
77 78 9.160496 TCAACAATACAAAAACAAGCTGATTTT 57.840 25.926 3.00 3.00 33.51 1.82
78 79 8.715191 TCAACAATACAAAAACAAGCTGATTT 57.285 26.923 0.00 0.00 0.00 2.17
79 80 7.042523 GCTCAACAATACAAAAACAAGCTGATT 60.043 33.333 0.00 0.00 0.00 2.57
80 81 6.421801 GCTCAACAATACAAAAACAAGCTGAT 59.578 34.615 0.00 0.00 0.00 2.90
81 82 5.748152 GCTCAACAATACAAAAACAAGCTGA 59.252 36.000 0.00 0.00 0.00 4.26
82 83 5.519566 TGCTCAACAATACAAAAACAAGCTG 59.480 36.000 0.00 0.00 0.00 4.24
83 84 5.659463 TGCTCAACAATACAAAAACAAGCT 58.341 33.333 0.00 0.00 0.00 3.74
84 85 5.748152 TCTGCTCAACAATACAAAAACAAGC 59.252 36.000 0.00 0.00 0.00 4.01
85 86 7.195646 TCTCTGCTCAACAATACAAAAACAAG 58.804 34.615 0.00 0.00 0.00 3.16
118 119 5.733109 GCTTAAAGTAATGCAAGCGTAAGAC 59.267 40.000 0.00 0.00 43.02 3.01
165 166 7.630026 TGAACGACATCTACAATATGCAATTC 58.370 34.615 0.00 0.00 0.00 2.17
204 205 9.892130 AACCCTTACATAACAAAATTTCAACAA 57.108 25.926 0.00 0.00 0.00 2.83
288 289 7.807907 GCCGTTCTAATTGATCTTGAAGAAAAA 59.192 33.333 0.00 0.00 0.00 1.94
300 301 1.663695 CGGGTGCCGTTCTAATTGAT 58.336 50.000 0.00 0.00 42.73 2.57
308 309 4.668118 TTCGACCGGGTGCCGTTC 62.668 66.667 3.30 0.00 46.80 3.95
369 370 3.247648 GTGCGTAGAAGAGTTTTTGAGCA 59.752 43.478 0.00 0.00 0.00 4.26
411 412 1.602311 CTCCTCAACTTTGCACAGCT 58.398 50.000 0.00 0.00 0.00 4.24
414 415 1.165907 CGCCTCCTCAACTTTGCACA 61.166 55.000 0.00 0.00 0.00 4.57
422 423 3.876589 TTCACGGCGCCTCCTCAAC 62.877 63.158 26.68 0.00 0.00 3.18
481 482 8.408043 AGATCATTTAGAATTGTGGTTGTTCA 57.592 30.769 0.00 0.00 0.00 3.18
558 947 1.730064 CTGCGCCGTTAGTATTGTTGT 59.270 47.619 4.18 0.00 0.00 3.32
564 953 0.810031 CCTTGCTGCGCCGTTAGTAT 60.810 55.000 4.18 0.00 0.00 2.12
566 955 2.742372 CCTTGCTGCGCCGTTAGT 60.742 61.111 4.18 0.00 0.00 2.24
567 956 4.166011 GCCTTGCTGCGCCGTTAG 62.166 66.667 4.18 0.00 0.00 2.34
587 977 2.823196 TACTTTGTGCATGCATACGC 57.177 45.000 25.64 11.56 39.24 4.42
598 991 7.940850 TCTCTTTTGAAGGGAAATACTTTGTG 58.059 34.615 0.00 0.00 34.36 3.33
613 1265 5.895636 TTGACAGTTTGCTCTCTTTTGAA 57.104 34.783 0.00 0.00 0.00 2.69
614 1266 5.221106 CCATTGACAGTTTGCTCTCTTTTGA 60.221 40.000 0.00 0.00 0.00 2.69
620 1272 4.836125 TTTCCATTGACAGTTTGCTCTC 57.164 40.909 0.00 0.00 0.00 3.20
629 1281 8.652810 AAGAAAAGATTGTTTTCCATTGACAG 57.347 30.769 13.64 0.00 38.74 3.51
643 1295 7.985634 TCGAACCTTTCAAAAGAAAAGATTG 57.014 32.000 4.06 0.00 38.28 2.67
647 1299 6.503524 TCCATCGAACCTTTCAAAAGAAAAG 58.496 36.000 4.06 0.00 38.28 2.27
648 1300 6.458232 TCCATCGAACCTTTCAAAAGAAAA 57.542 33.333 4.06 0.00 38.28 2.29
649 1301 6.458232 TTCCATCGAACCTTTCAAAAGAAA 57.542 33.333 4.06 0.00 38.28 2.52
650 1302 6.458232 TTTCCATCGAACCTTTCAAAAGAA 57.542 33.333 4.06 0.00 38.28 2.52
651 1303 6.458232 TTTTCCATCGAACCTTTCAAAAGA 57.542 33.333 4.06 0.00 38.28 2.52
652 1304 8.810652 TTATTTTCCATCGAACCTTTCAAAAG 57.189 30.769 0.00 0.00 35.79 2.27
653 1305 9.418045 GATTATTTTCCATCGAACCTTTCAAAA 57.582 29.630 0.00 0.00 0.00 2.44
654 1306 8.802267 AGATTATTTTCCATCGAACCTTTCAAA 58.198 29.630 0.00 0.00 0.00 2.69
655 1307 8.348285 AGATTATTTTCCATCGAACCTTTCAA 57.652 30.769 0.00 0.00 0.00 2.69
656 1308 7.938140 AGATTATTTTCCATCGAACCTTTCA 57.062 32.000 0.00 0.00 0.00 2.69
657 1309 9.717892 GTTAGATTATTTTCCATCGAACCTTTC 57.282 33.333 0.00 0.00 32.06 2.62
658 1310 9.462606 AGTTAGATTATTTTCCATCGAACCTTT 57.537 29.630 0.00 0.00 36.31 3.11
659 1311 9.110502 GAGTTAGATTATTTTCCATCGAACCTT 57.889 33.333 0.00 0.00 36.31 3.50
660 1312 8.265055 TGAGTTAGATTATTTTCCATCGAACCT 58.735 33.333 0.00 0.00 36.31 3.50
661 1313 8.433421 TGAGTTAGATTATTTTCCATCGAACC 57.567 34.615 0.00 0.00 36.31 3.62
669 1321 9.020813 GCGGAATTTTGAGTTAGATTATTTTCC 57.979 33.333 0.00 0.00 0.00 3.13
670 1322 8.734030 CGCGGAATTTTGAGTTAGATTATTTTC 58.266 33.333 0.00 0.00 0.00 2.29
671 1323 7.220108 GCGCGGAATTTTGAGTTAGATTATTTT 59.780 33.333 8.83 0.00 0.00 1.82
672 1324 6.691388 GCGCGGAATTTTGAGTTAGATTATTT 59.309 34.615 8.83 0.00 0.00 1.40
673 1325 6.199393 GCGCGGAATTTTGAGTTAGATTATT 58.801 36.000 8.83 0.00 0.00 1.40
674 1326 5.277828 GGCGCGGAATTTTGAGTTAGATTAT 60.278 40.000 8.83 0.00 0.00 1.28
675 1327 4.034742 GGCGCGGAATTTTGAGTTAGATTA 59.965 41.667 8.83 0.00 0.00 1.75
676 1328 3.181500 GGCGCGGAATTTTGAGTTAGATT 60.181 43.478 8.83 0.00 0.00 2.40
694 1346 3.374012 TATGTACCGTGGTGGGCGC 62.374 63.158 0.00 0.00 44.64 6.53
695 1347 1.519898 GTATGTACCGTGGTGGGCG 60.520 63.158 0.72 0.00 44.64 6.13
696 1348 1.519898 CGTATGTACCGTGGTGGGC 60.520 63.158 0.72 0.00 44.64 5.36
698 1350 1.874915 CGCGTATGTACCGTGGTGG 60.875 63.158 0.00 0.00 46.41 4.61
700 1352 2.202650 GCGCGTATGTACCGTGGT 60.203 61.111 8.43 0.00 36.39 4.16
701 1353 3.317036 CGCGCGTATGTACCGTGG 61.317 66.667 24.19 0.00 36.39 4.94
702 1354 3.968062 GCGCGCGTATGTACCGTG 61.968 66.667 32.35 0.00 38.76 4.94
732 1394 4.154613 CGTGGAGAAGACAGACGC 57.845 61.111 0.00 0.00 0.00 5.19
815 1488 5.646606 TCGACTGATTTGATACGATCACAA 58.353 37.500 0.00 0.00 39.39 3.33
818 1491 4.261614 CCCTCGACTGATTTGATACGATCA 60.262 45.833 0.00 0.00 37.55 2.92
834 1507 4.570663 CGGATCGGTGCCCTCGAC 62.571 72.222 0.00 0.00 39.55 4.20
866 1542 2.413142 GGTGGGCTCTGATTGCTGC 61.413 63.158 0.00 0.00 0.00 5.25
869 1545 1.452833 GGAGGTGGGCTCTGATTGC 60.453 63.158 0.00 0.00 0.00 3.56
983 1705 3.110897 ATGGATGCCGCTGCTGCTA 62.111 57.895 16.81 4.38 38.71 3.49
1437 2566 1.497223 GAGCAGCATCGATCAGCCAC 61.497 60.000 0.00 0.00 0.00 5.01
1492 2622 1.949525 ACACAGCCAGCACTTAAGTTG 59.050 47.619 5.07 2.68 0.00 3.16
1498 2628 1.526917 GGACACACAGCCAGCACTT 60.527 57.895 0.00 0.00 0.00 3.16
1499 2629 1.121407 TAGGACACACAGCCAGCACT 61.121 55.000 0.00 0.00 0.00 4.40
1512 2642 5.432645 TCATGAAACAGTTTGTGTAGGACA 58.567 37.500 2.34 0.00 39.03 4.02
1513 2643 6.428159 AGATCATGAAACAGTTTGTGTAGGAC 59.572 38.462 2.34 0.00 39.03 3.85
1514 2644 6.427853 CAGATCATGAAACAGTTTGTGTAGGA 59.572 38.462 2.34 0.00 39.03 2.94
1515 2645 6.348786 CCAGATCATGAAACAGTTTGTGTAGG 60.349 42.308 2.34 1.34 39.03 3.18
1516 2646 6.427853 TCCAGATCATGAAACAGTTTGTGTAG 59.572 38.462 2.34 0.00 39.03 2.74
1517 2647 6.295249 TCCAGATCATGAAACAGTTTGTGTA 58.705 36.000 2.34 0.00 39.03 2.90
1575 3489 7.061752 GGTAACAACTGAACATGATACAGTC 57.938 40.000 18.28 9.78 42.81 3.51
1594 3515 4.973168 TCATAGCAAGGGATCATGGTAAC 58.027 43.478 7.93 0.00 33.70 2.50
1609 3530 2.236893 TCACACAAGCAGGATCATAGCA 59.763 45.455 0.00 0.00 0.00 3.49
1610 3531 2.611292 GTCACACAAGCAGGATCATAGC 59.389 50.000 0.00 0.00 0.00 2.97
1611 3532 4.134379 AGTCACACAAGCAGGATCATAG 57.866 45.455 0.00 0.00 0.00 2.23
1613 3534 3.430042 AAGTCACACAAGCAGGATCAT 57.570 42.857 0.00 0.00 0.00 2.45
1615 3554 2.880890 ACAAAGTCACACAAGCAGGATC 59.119 45.455 0.00 0.00 0.00 3.36
1622 3561 2.684881 AGCAAGGACAAAGTCACACAAG 59.315 45.455 0.00 0.00 33.68 3.16
1629 3568 2.673368 CGACCATAGCAAGGACAAAGTC 59.327 50.000 0.00 0.00 0.00 3.01
1635 3574 1.204941 ACAGACGACCATAGCAAGGAC 59.795 52.381 0.00 0.00 0.00 3.85
1636 3575 1.557099 ACAGACGACCATAGCAAGGA 58.443 50.000 0.00 0.00 0.00 3.36
1637 3576 2.481449 GGTACAGACGACCATAGCAAGG 60.481 54.545 0.00 0.00 36.91 3.61
1642 3581 1.749063 TGCAGGTACAGACGACCATAG 59.251 52.381 0.00 0.00 39.65 2.23
1644 3583 0.246635 GTGCAGGTACAGACGACCAT 59.753 55.000 0.00 0.00 39.65 3.55
1645 3584 1.110518 TGTGCAGGTACAGACGACCA 61.111 55.000 0.00 0.00 39.65 4.02
1646 3585 1.663739 TGTGCAGGTACAGACGACC 59.336 57.895 0.00 0.00 37.22 4.79
1655 3655 3.930336 CAGAGAAACATCTGTGCAGGTA 58.070 45.455 0.00 0.00 41.52 3.08
1669 3669 8.506168 AAGTGTTCTGAAATGTAACAGAGAAA 57.494 30.769 0.00 0.00 42.72 2.52
1686 3686 1.940613 GTGCTCGTTGGAAAGTGTTCT 59.059 47.619 0.00 0.00 33.92 3.01
1690 3690 0.040958 GCAGTGCTCGTTGGAAAGTG 60.041 55.000 8.18 0.00 0.00 3.16
1691 3691 1.166531 GGCAGTGCTCGTTGGAAAGT 61.167 55.000 16.11 0.00 0.00 2.66
1692 3692 1.165907 TGGCAGTGCTCGTTGGAAAG 61.166 55.000 16.11 0.00 0.00 2.62
1693 3693 0.749818 TTGGCAGTGCTCGTTGGAAA 60.750 50.000 16.11 0.00 0.00 3.13
1694 3694 1.153066 TTGGCAGTGCTCGTTGGAA 60.153 52.632 16.11 0.00 0.00 3.53
1695 3695 1.597854 CTTGGCAGTGCTCGTTGGA 60.598 57.895 16.11 0.00 0.00 3.53
1696 3696 2.620112 CCTTGGCAGTGCTCGTTGG 61.620 63.158 16.11 6.90 0.00 3.77
1697 3697 1.893808 ACCTTGGCAGTGCTCGTTG 60.894 57.895 16.11 3.01 0.00 4.10
1698 3698 1.893808 CACCTTGGCAGTGCTCGTT 60.894 57.895 16.11 0.00 0.00 3.85
1699 3699 2.281070 CACCTTGGCAGTGCTCGT 60.281 61.111 16.11 3.16 0.00 4.18
1701 3701 1.673665 CCTCACCTTGGCAGTGCTC 60.674 63.158 16.11 5.84 35.14 4.26
1710 3710 4.680237 TGACGCCGCCTCACCTTG 62.680 66.667 0.00 0.00 0.00 3.61
1711 3711 4.379243 CTGACGCCGCCTCACCTT 62.379 66.667 0.00 0.00 0.00 3.50
1729 3825 5.047731 TGTCTGAAGAAATCGACACTCTCAT 60.048 40.000 0.00 0.00 36.97 2.90
1730 3826 4.278419 TGTCTGAAGAAATCGACACTCTCA 59.722 41.667 0.00 0.00 36.97 3.27
1731 3827 4.799678 TGTCTGAAGAAATCGACACTCTC 58.200 43.478 0.00 0.00 36.97 3.20
1732 3828 4.855715 TGTCTGAAGAAATCGACACTCT 57.144 40.909 0.00 0.00 36.97 3.24
1767 3881 1.475930 GGAACAGCATTAGGAGGAGGC 60.476 57.143 0.00 0.00 0.00 4.70
1810 3932 8.768397 TGGTGTATCCTGAACATCTAACTAATT 58.232 33.333 0.00 0.00 37.07 1.40
1811 3933 8.319057 TGGTGTATCCTGAACATCTAACTAAT 57.681 34.615 0.00 0.00 37.07 1.73
1812 3934 7.727578 TGGTGTATCCTGAACATCTAACTAA 57.272 36.000 0.00 0.00 37.07 2.24
1828 3950 7.942341 TCCCCATAAATTACAAGATGGTGTATC 59.058 37.037 0.00 0.00 37.70 2.24
1848 3970 2.649312 TCCTGAAACATTGAGTCCCCAT 59.351 45.455 0.00 0.00 0.00 4.00
1917 4041 3.450817 TGGTAAGGATCGAGCATGAGAAA 59.549 43.478 1.84 0.00 0.00 2.52
1920 4044 3.674528 ATGGTAAGGATCGAGCATGAG 57.325 47.619 1.84 0.00 32.72 2.90
1929 4053 4.288105 ACAGGGATGATCATGGTAAGGATC 59.712 45.833 14.30 0.00 42.66 3.36
1944 4382 6.351711 TCAACAGAGATAATCAACAGGGATG 58.648 40.000 0.00 0.00 0.00 3.51
1953 4391 7.568349 AGCCTTGTAATCAACAGAGATAATCA 58.432 34.615 0.00 0.00 39.87 2.57
1954 4392 9.202273 CTAGCCTTGTAATCAACAGAGATAATC 57.798 37.037 0.00 0.00 39.87 1.75
1955 4393 8.153550 CCTAGCCTTGTAATCAACAGAGATAAT 58.846 37.037 0.00 0.00 39.87 1.28
1956 4394 7.500992 CCTAGCCTTGTAATCAACAGAGATAA 58.499 38.462 0.00 0.00 39.87 1.75
1957 4395 6.463049 GCCTAGCCTTGTAATCAACAGAGATA 60.463 42.308 0.00 0.00 39.87 1.98
1958 4396 5.686124 GCCTAGCCTTGTAATCAACAGAGAT 60.686 44.000 0.00 0.00 39.87 2.75
1959 4397 4.383118 GCCTAGCCTTGTAATCAACAGAGA 60.383 45.833 0.00 0.00 39.87 3.10
1960 4398 3.873952 GCCTAGCCTTGTAATCAACAGAG 59.126 47.826 0.00 0.00 39.87 3.35
1961 4399 3.370527 GGCCTAGCCTTGTAATCAACAGA 60.371 47.826 0.00 0.00 46.69 3.41
1962 4400 2.945668 GGCCTAGCCTTGTAATCAACAG 59.054 50.000 0.00 0.00 46.69 3.16
1963 4401 2.999331 GGCCTAGCCTTGTAATCAACA 58.001 47.619 0.00 0.00 46.69 3.33
1976 4414 0.885150 GCTATCAAACGGGGCCTAGC 60.885 60.000 0.84 2.90 0.00 3.42
1977 4415 0.468226 TGCTATCAAACGGGGCCTAG 59.532 55.000 0.84 0.00 0.00 3.02
1978 4416 0.913205 TTGCTATCAAACGGGGCCTA 59.087 50.000 0.84 0.00 0.00 3.93
1979 4417 0.039035 TTTGCTATCAAACGGGGCCT 59.961 50.000 0.84 0.00 37.28 5.19
1980 4418 0.455815 CTTTGCTATCAAACGGGGCC 59.544 55.000 0.00 0.00 37.28 5.80
1981 4419 1.173913 ACTTTGCTATCAAACGGGGC 58.826 50.000 0.00 0.00 37.28 5.80
1982 4420 5.576447 AAATACTTTGCTATCAAACGGGG 57.424 39.130 0.00 0.00 37.28 5.73
2017 4455 8.515414 GGTAATCTCAAAAACTGCAGTATTCTT 58.485 33.333 22.01 7.84 0.00 2.52
2018 4456 7.665559 TGGTAATCTCAAAAACTGCAGTATTCT 59.334 33.333 22.01 0.19 0.00 2.40
2019 4457 7.816640 TGGTAATCTCAAAAACTGCAGTATTC 58.183 34.615 22.01 8.12 0.00 1.75
2020 4458 7.759489 TGGTAATCTCAAAAACTGCAGTATT 57.241 32.000 22.01 16.01 0.00 1.89
2021 4459 7.944729 ATGGTAATCTCAAAAACTGCAGTAT 57.055 32.000 22.01 9.71 0.00 2.12
2022 4460 8.100791 ACTATGGTAATCTCAAAAACTGCAGTA 58.899 33.333 22.01 2.09 0.00 2.74
2023 4461 6.942576 ACTATGGTAATCTCAAAAACTGCAGT 59.057 34.615 15.25 15.25 0.00 4.40
2024 4462 7.383102 ACTATGGTAATCTCAAAAACTGCAG 57.617 36.000 13.48 13.48 0.00 4.41
2025 4463 7.759489 AACTATGGTAATCTCAAAAACTGCA 57.241 32.000 0.00 0.00 0.00 4.41
2071 4509 2.723273 AGCACAATAGTTAGGGGCAAC 58.277 47.619 0.00 0.00 0.00 4.17
2072 4510 3.449746 AAGCACAATAGTTAGGGGCAA 57.550 42.857 0.00 0.00 0.00 4.52
2073 4511 3.449746 AAAGCACAATAGTTAGGGGCA 57.550 42.857 0.00 0.00 0.00 5.36
2074 4512 5.907866 TTAAAAGCACAATAGTTAGGGGC 57.092 39.130 0.00 0.00 0.00 5.80
2075 4513 8.621286 CAGTATTAAAAGCACAATAGTTAGGGG 58.379 37.037 0.00 0.00 0.00 4.79
2076 4514 9.174166 ACAGTATTAAAAGCACAATAGTTAGGG 57.826 33.333 0.00 0.00 0.00 3.53
2087 4525 8.879759 TGCTCAATACTACAGTATTAAAAGCAC 58.120 33.333 24.43 11.11 46.23 4.40
2095 4533 6.878923 TGCAGTTTGCTCAATACTACAGTATT 59.121 34.615 8.50 8.50 45.86 1.89
2096 4534 6.406370 TGCAGTTTGCTCAATACTACAGTAT 58.594 36.000 2.48 0.00 45.31 2.12
2101 4539 5.613358 AACTGCAGTTTGCTCAATACTAC 57.387 39.130 26.36 0.00 45.31 2.73
2177 4615 2.602217 CCGTTGTGTTTAAGCACTCAGC 60.602 50.000 21.06 5.56 46.19 4.26
2178 4616 2.602217 GCCGTTGTGTTTAAGCACTCAG 60.602 50.000 21.06 12.38 39.89 3.35
2179 4617 1.332375 GCCGTTGTGTTTAAGCACTCA 59.668 47.619 21.06 7.28 39.89 3.41
2180 4618 1.602377 AGCCGTTGTGTTTAAGCACTC 59.398 47.619 21.06 13.65 39.89 3.51
2181 4619 1.675552 AGCCGTTGTGTTTAAGCACT 58.324 45.000 21.06 0.00 39.89 4.40
2182 4620 3.612472 TTAGCCGTTGTGTTTAAGCAC 57.388 42.857 14.87 14.87 39.65 4.40
2183 4621 3.377485 TGTTTAGCCGTTGTGTTTAAGCA 59.623 39.130 0.00 0.00 0.00 3.91
2184 4622 3.954999 TGTTTAGCCGTTGTGTTTAAGC 58.045 40.909 0.00 0.00 0.00 3.09
2185 4623 3.972502 GCTGTTTAGCCGTTGTGTTTAAG 59.027 43.478 0.00 0.00 44.33 1.85
2186 4624 3.954999 GCTGTTTAGCCGTTGTGTTTAA 58.045 40.909 0.00 0.00 44.33 1.52
2187 4625 3.612472 GCTGTTTAGCCGTTGTGTTTA 57.388 42.857 0.00 0.00 44.33 2.01
2188 4626 2.485266 GCTGTTTAGCCGTTGTGTTT 57.515 45.000 0.00 0.00 44.33 2.83
2199 4637 6.747659 AACGCTGTAAATTTTGCTGTTTAG 57.252 33.333 0.00 0.00 0.00 1.85
2200 4638 7.148885 GCATAACGCTGTAAATTTTGCTGTTTA 60.149 33.333 0.00 5.11 37.77 2.01
2201 4639 6.346518 GCATAACGCTGTAAATTTTGCTGTTT 60.347 34.615 0.00 3.54 37.77 2.83
2202 4640 5.118510 GCATAACGCTGTAAATTTTGCTGTT 59.881 36.000 0.00 9.82 37.77 3.16
2203 4641 4.621034 GCATAACGCTGTAAATTTTGCTGT 59.379 37.500 0.00 0.25 37.77 4.40
2204 4642 4.258977 CGCATAACGCTGTAAATTTTGCTG 60.259 41.667 0.00 0.00 39.08 4.41
2205 4643 3.851403 CGCATAACGCTGTAAATTTTGCT 59.149 39.130 0.00 0.00 39.08 3.91
2206 4644 3.849145 TCGCATAACGCTGTAAATTTTGC 59.151 39.130 0.00 0.00 43.23 3.68
2207 4645 4.848841 TGTCGCATAACGCTGTAAATTTTG 59.151 37.500 0.00 0.00 43.23 2.44
2208 4646 5.037015 TGTCGCATAACGCTGTAAATTTT 57.963 34.783 0.00 0.00 43.23 1.82
2209 4647 4.671880 TGTCGCATAACGCTGTAAATTT 57.328 36.364 0.00 0.00 43.23 1.82
2210 4648 4.083749 TGTTGTCGCATAACGCTGTAAATT 60.084 37.500 0.00 0.00 43.23 1.82
2211 4649 3.433957 TGTTGTCGCATAACGCTGTAAAT 59.566 39.130 0.00 0.00 43.23 1.40
2212 4650 2.801111 TGTTGTCGCATAACGCTGTAAA 59.199 40.909 0.00 0.00 43.23 2.01
2213 4651 2.405172 TGTTGTCGCATAACGCTGTAA 58.595 42.857 0.00 0.00 43.23 2.41
2214 4652 1.989864 CTGTTGTCGCATAACGCTGTA 59.010 47.619 0.00 0.00 43.23 2.74
2215 4653 0.790207 CTGTTGTCGCATAACGCTGT 59.210 50.000 0.00 0.00 43.23 4.40
2216 4654 0.519175 GCTGTTGTCGCATAACGCTG 60.519 55.000 0.00 0.00 43.23 5.18
2217 4655 1.635663 GGCTGTTGTCGCATAACGCT 61.636 55.000 0.00 0.00 43.23 5.07
2218 4656 1.226018 GGCTGTTGTCGCATAACGC 60.226 57.895 0.00 0.00 43.23 4.84
2219 4657 0.515127 TTGGCTGTTGTCGCATAACG 59.485 50.000 0.00 0.00 45.62 3.18
2220 4658 2.287308 TGTTTGGCTGTTGTCGCATAAC 60.287 45.455 0.00 0.00 0.00 1.89
2221 4659 1.950216 TGTTTGGCTGTTGTCGCATAA 59.050 42.857 0.00 0.00 0.00 1.90
2222 4660 1.598882 TGTTTGGCTGTTGTCGCATA 58.401 45.000 0.00 0.00 0.00 3.14
2223 4661 0.743688 TTGTTTGGCTGTTGTCGCAT 59.256 45.000 0.00 0.00 0.00 4.73
2224 4662 0.100325 CTTGTTTGGCTGTTGTCGCA 59.900 50.000 0.00 0.00 0.00 5.10
2225 4663 0.100503 ACTTGTTTGGCTGTTGTCGC 59.899 50.000 0.00 0.00 0.00 5.19
2226 4664 2.097466 AGAACTTGTTTGGCTGTTGTCG 59.903 45.455 0.00 0.00 0.00 4.35
2227 4665 3.782889 AGAACTTGTTTGGCTGTTGTC 57.217 42.857 0.00 0.00 0.00 3.18
2228 4666 4.644685 ACATAGAACTTGTTTGGCTGTTGT 59.355 37.500 0.00 0.00 0.00 3.32
2229 4667 5.186996 ACATAGAACTTGTTTGGCTGTTG 57.813 39.130 0.00 0.00 0.00 3.33
2230 4668 7.014230 ACAATACATAGAACTTGTTTGGCTGTT 59.986 33.333 0.00 0.00 0.00 3.16
2231 4669 6.490040 ACAATACATAGAACTTGTTTGGCTGT 59.510 34.615 0.00 0.00 0.00 4.40
2232 4670 6.803320 CACAATACATAGAACTTGTTTGGCTG 59.197 38.462 0.00 0.00 29.74 4.85
2233 4671 6.714810 TCACAATACATAGAACTTGTTTGGCT 59.285 34.615 0.00 0.00 29.74 4.75
2234 4672 6.908825 TCACAATACATAGAACTTGTTTGGC 58.091 36.000 0.00 0.00 29.74 4.52
2295 4733 9.950496 CAGTAATTTTGCCTATAGGTATGAGAT 57.050 33.333 20.10 5.09 37.57 2.75
2296 4734 8.934697 ACAGTAATTTTGCCTATAGGTATGAGA 58.065 33.333 20.10 0.00 37.57 3.27
2299 4737 9.998106 ACTACAGTAATTTTGCCTATAGGTATG 57.002 33.333 20.10 11.05 37.57 2.39
2302 4740 9.392259 GAAACTACAGTAATTTTGCCTATAGGT 57.608 33.333 20.10 1.61 37.57 3.08
2303 4741 9.614792 AGAAACTACAGTAATTTTGCCTATAGG 57.385 33.333 15.01 15.01 38.53 2.57
2306 4744 9.686683 ATCAGAAACTACAGTAATTTTGCCTAT 57.313 29.630 0.00 0.00 0.00 2.57
2308 4746 8.947115 GTATCAGAAACTACAGTAATTTTGCCT 58.053 33.333 0.00 0.00 0.00 4.75
2309 4747 8.947115 AGTATCAGAAACTACAGTAATTTTGCC 58.053 33.333 0.00 0.00 0.00 4.52
2316 4754 9.841295 AAACCAAAGTATCAGAAACTACAGTAA 57.159 29.630 0.00 0.00 0.00 2.24
2345 4783 9.799106 AGGCTATGTTTGATAGCAAAGTATTAT 57.201 29.630 6.36 0.28 46.47 1.28
2347 4785 9.277783 CTAGGCTATGTTTGATAGCAAAGTATT 57.722 33.333 6.36 0.00 46.47 1.89
2348 4786 8.651389 TCTAGGCTATGTTTGATAGCAAAGTAT 58.349 33.333 6.36 7.30 46.47 2.12
2349 4787 7.926555 GTCTAGGCTATGTTTGATAGCAAAGTA 59.073 37.037 6.36 2.70 46.47 2.24
2350 4788 6.763610 GTCTAGGCTATGTTTGATAGCAAAGT 59.236 38.462 6.36 1.58 46.47 2.66
2351 4789 6.763135 TGTCTAGGCTATGTTTGATAGCAAAG 59.237 38.462 6.36 10.52 46.47 2.77
2352 4790 6.649155 TGTCTAGGCTATGTTTGATAGCAAA 58.351 36.000 14.06 1.13 46.47 3.68
2353 4791 6.233905 TGTCTAGGCTATGTTTGATAGCAA 57.766 37.500 14.06 0.00 46.47 3.91
2354 4792 5.221521 CCTGTCTAGGCTATGTTTGATAGCA 60.222 44.000 14.06 0.00 46.47 3.49
2355 4793 5.233988 CCTGTCTAGGCTATGTTTGATAGC 58.766 45.833 5.30 5.30 44.56 2.97
2370 4808 2.349886 GCTGAAAATCGTGCCTGTCTAG 59.650 50.000 0.00 0.00 0.00 2.43
2371 4809 2.289382 TGCTGAAAATCGTGCCTGTCTA 60.289 45.455 0.00 0.00 0.00 2.59
2372 4810 1.160137 GCTGAAAATCGTGCCTGTCT 58.840 50.000 0.00 0.00 0.00 3.41
2373 4811 0.874390 TGCTGAAAATCGTGCCTGTC 59.126 50.000 0.00 0.00 0.00 3.51
2374 4812 1.317613 TTGCTGAAAATCGTGCCTGT 58.682 45.000 0.00 0.00 0.00 4.00
2375 4813 2.642139 ATTGCTGAAAATCGTGCCTG 57.358 45.000 0.00 0.00 0.00 4.85
2376 4814 3.665745 AAATTGCTGAAAATCGTGCCT 57.334 38.095 0.00 0.00 0.00 4.75
2377 4815 4.056452 CAAAATTGCTGAAAATCGTGCC 57.944 40.909 0.00 0.00 0.00 5.01
2398 4836 3.595108 GAAAACCGAGGCGCAGTGC 62.595 63.158 10.83 4.58 45.38 4.40
2399 4837 2.556287 GAAAACCGAGGCGCAGTG 59.444 61.111 10.83 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.