Multiple sequence alignment - TraesCS7B01G394100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G394100 chr7B 100.000 2685 0 0 1 2685 661715606 661718290 0.000000e+00 4959.0
1 TraesCS7B01G394100 chr7B 93.578 981 48 10 834 1804 661998767 661999742 0.000000e+00 1448.0
2 TraesCS7B01G394100 chr7B 87.666 1127 95 32 834 1941 662010201 662009100 0.000000e+00 1271.0
3 TraesCS7B01G394100 chr7B 89.241 790 68 14 794 1573 662311759 662310977 0.000000e+00 972.0
4 TraesCS7B01G394100 chr7B 86.532 891 89 18 830 1696 674194091 674194974 0.000000e+00 952.0
5 TraesCS7B01G394100 chr7B 88.010 784 73 17 750 1516 661468822 661469601 0.000000e+00 907.0
6 TraesCS7B01G394100 chr7B 90.263 647 42 11 2 633 143199930 143200570 0.000000e+00 826.0
7 TraesCS7B01G394100 chr7B 87.407 270 8 8 2099 2344 661913879 661914146 1.220000e-73 287.0
8 TraesCS7B01G394100 chr7B 92.308 130 10 0 1971 2100 662311047 662310918 4.560000e-43 185.0
9 TraesCS7B01G394100 chr7B 87.736 106 13 0 2098 2203 662000391 662000496 1.010000e-24 124.0
10 TraesCS7B01G394100 chr7B 86.842 76 9 1 1965 2040 674194768 674194842 1.710000e-12 84.2
11 TraesCS7B01G394100 chr7D 94.946 930 32 6 761 1677 588408990 588409917 0.000000e+00 1443.0
12 TraesCS7B01G394100 chr7D 88.932 768 68 13 750 1508 596092554 596093313 0.000000e+00 931.0
13 TraesCS7B01G394100 chr7D 79.377 1188 132 71 834 1962 588432774 588431641 0.000000e+00 732.0
14 TraesCS7B01G394100 chr7D 96.471 85 3 0 1769 1853 588409930 588410014 1.000000e-29 141.0
15 TraesCS7B01G394100 chr7D 89.908 109 7 3 2097 2203 588471068 588470962 1.300000e-28 137.0
16 TraesCS7B01G394100 chr7D 76.684 193 31 6 1668 1860 588410260 588410438 7.910000e-16 95.3
17 TraesCS7B01G394100 chr5B 92.213 732 24 6 1 699 620761563 620760832 0.000000e+00 1005.0
18 TraesCS7B01G394100 chr5B 93.750 112 6 1 588 699 89200661 89200771 1.650000e-37 167.0
19 TraesCS7B01G394100 chr5B 82.635 167 24 5 2 166 688550133 688549970 2.790000e-30 143.0
20 TraesCS7B01G394100 chr7A 86.957 897 89 21 830 1711 689252003 689252886 0.000000e+00 983.0
21 TraesCS7B01G394100 chr7A 84.305 1064 94 44 830 1857 680264782 680263756 0.000000e+00 972.0
22 TraesCS7B01G394100 chr7A 88.972 798 68 20 750 1531 680244258 680245051 0.000000e+00 968.0
23 TraesCS7B01G394100 chr7A 80.205 293 43 5 1568 1860 680245049 680245326 3.500000e-49 206.0
24 TraesCS7B01G394100 chr2B 91.139 711 42 14 2 699 253714829 253715531 0.000000e+00 944.0
25 TraesCS7B01G394100 chr2D 91.730 653 36 7 56 699 144465707 144465064 0.000000e+00 891.0
26 TraesCS7B01G394100 chr1B 91.612 608 35 11 56 651 42322130 42322733 0.000000e+00 826.0
27 TraesCS7B01G394100 chr2A 89.952 627 50 8 56 671 10518269 10517645 0.000000e+00 797.0
28 TraesCS7B01G394100 chr2A 87.380 626 44 15 32 647 5648314 5647714 0.000000e+00 686.0
29 TraesCS7B01G394100 chr2A 77.402 562 98 14 31 583 767799077 767799618 9.340000e-80 307.0
30 TraesCS7B01G394100 chr2A 84.375 288 39 6 317 603 17916870 17917152 7.320000e-71 278.0
31 TraesCS7B01G394100 chr2A 91.379 58 5 0 636 693 125629610 125629553 2.220000e-11 80.5
32 TraesCS7B01G394100 chr6D 94.595 111 5 1 562 671 7328930 7328820 1.280000e-38 171.0
33 TraesCS7B01G394100 chr6B 82.353 136 18 3 2548 2681 718358900 718358769 2.180000e-21 113.0
34 TraesCS7B01G394100 chr5D 91.429 70 6 0 2357 2426 47539374 47539305 2.200000e-16 97.1
35 TraesCS7B01G394100 chr5A 91.429 70 6 0 2357 2426 37938770 37938701 2.200000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G394100 chr7B 661715606 661718290 2684 False 4959.000000 4959 100.0000 1 2685 1 chr7B.!!$F3 2684
1 TraesCS7B01G394100 chr7B 662009100 662010201 1101 True 1271.000000 1271 87.6660 834 1941 1 chr7B.!!$R1 1107
2 TraesCS7B01G394100 chr7B 661468822 661469601 779 False 907.000000 907 88.0100 750 1516 1 chr7B.!!$F2 766
3 TraesCS7B01G394100 chr7B 143199930 143200570 640 False 826.000000 826 90.2630 2 633 1 chr7B.!!$F1 631
4 TraesCS7B01G394100 chr7B 661998767 662000496 1729 False 786.000000 1448 90.6570 834 2203 2 chr7B.!!$F5 1369
5 TraesCS7B01G394100 chr7B 662310918 662311759 841 True 578.500000 972 90.7745 794 2100 2 chr7B.!!$R2 1306
6 TraesCS7B01G394100 chr7B 674194091 674194974 883 False 518.100000 952 86.6870 830 2040 2 chr7B.!!$F6 1210
7 TraesCS7B01G394100 chr7D 596092554 596093313 759 False 931.000000 931 88.9320 750 1508 1 chr7D.!!$F1 758
8 TraesCS7B01G394100 chr7D 588431641 588432774 1133 True 732.000000 732 79.3770 834 1962 1 chr7D.!!$R1 1128
9 TraesCS7B01G394100 chr7D 588408990 588410438 1448 False 559.766667 1443 89.3670 761 1860 3 chr7D.!!$F2 1099
10 TraesCS7B01G394100 chr5B 620760832 620761563 731 True 1005.000000 1005 92.2130 1 699 1 chr5B.!!$R1 698
11 TraesCS7B01G394100 chr7A 689252003 689252886 883 False 983.000000 983 86.9570 830 1711 1 chr7A.!!$F1 881
12 TraesCS7B01G394100 chr7A 680263756 680264782 1026 True 972.000000 972 84.3050 830 1857 1 chr7A.!!$R1 1027
13 TraesCS7B01G394100 chr7A 680244258 680245326 1068 False 587.000000 968 84.5885 750 1860 2 chr7A.!!$F2 1110
14 TraesCS7B01G394100 chr2B 253714829 253715531 702 False 944.000000 944 91.1390 2 699 1 chr2B.!!$F1 697
15 TraesCS7B01G394100 chr2D 144465064 144465707 643 True 891.000000 891 91.7300 56 699 1 chr2D.!!$R1 643
16 TraesCS7B01G394100 chr1B 42322130 42322733 603 False 826.000000 826 91.6120 56 651 1 chr1B.!!$F1 595
17 TraesCS7B01G394100 chr2A 10517645 10518269 624 True 797.000000 797 89.9520 56 671 1 chr2A.!!$R2 615
18 TraesCS7B01G394100 chr2A 5647714 5648314 600 True 686.000000 686 87.3800 32 647 1 chr2A.!!$R1 615
19 TraesCS7B01G394100 chr2A 767799077 767799618 541 False 307.000000 307 77.4020 31 583 1 chr2A.!!$F2 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 778 0.882927 GCGCCGTATAGGAAATGCCA 60.883 55.0 0.0 0.0 45.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2500 2947 0.0293 CTTGGCCGGAATGTTATGCG 59.971 55.0 5.05 0.0 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
429 501 2.481289 GCTGGTAGCTTCCAAAGACT 57.519 50.000 13.60 0.00 38.45 3.24
699 778 0.882927 GCGCCGTATAGGAAATGCCA 60.883 55.000 0.00 0.00 45.00 4.92
700 779 1.588674 CGCCGTATAGGAAATGCCAA 58.411 50.000 0.00 0.00 45.00 4.52
701 780 1.531149 CGCCGTATAGGAAATGCCAAG 59.469 52.381 0.00 0.00 45.00 3.61
702 781 2.572290 GCCGTATAGGAAATGCCAAGT 58.428 47.619 0.00 0.00 45.00 3.16
703 782 2.949644 GCCGTATAGGAAATGCCAAGTT 59.050 45.455 0.00 0.00 45.00 2.66
704 783 3.380320 GCCGTATAGGAAATGCCAAGTTT 59.620 43.478 0.00 0.00 45.00 2.66
705 784 4.142249 GCCGTATAGGAAATGCCAAGTTTT 60.142 41.667 0.00 0.00 45.00 2.43
706 785 5.066764 GCCGTATAGGAAATGCCAAGTTTTA 59.933 40.000 0.00 0.00 45.00 1.52
707 786 6.404954 GCCGTATAGGAAATGCCAAGTTTTAA 60.405 38.462 0.00 0.00 45.00 1.52
708 787 7.683463 GCCGTATAGGAAATGCCAAGTTTTAAT 60.683 37.037 0.00 0.00 45.00 1.40
709 788 7.647715 CCGTATAGGAAATGCCAAGTTTTAATG 59.352 37.037 0.00 0.00 45.00 1.90
710 789 8.188139 CGTATAGGAAATGCCAAGTTTTAATGT 58.812 33.333 0.00 0.00 40.02 2.71
711 790 9.869757 GTATAGGAAATGCCAAGTTTTAATGTT 57.130 29.630 0.00 0.00 40.02 2.71
713 792 7.728847 AGGAAATGCCAAGTTTTAATGTTTC 57.271 32.000 0.00 0.00 40.02 2.78
714 793 7.508687 AGGAAATGCCAAGTTTTAATGTTTCT 58.491 30.769 0.00 0.00 40.02 2.52
715 794 8.646900 AGGAAATGCCAAGTTTTAATGTTTCTA 58.353 29.630 0.00 0.00 40.02 2.10
716 795 9.267084 GGAAATGCCAAGTTTTAATGTTTCTAA 57.733 29.630 0.00 0.00 36.34 2.10
734 813 8.683550 GTTTCTAAATTTTTAGGAACGGATGG 57.316 34.615 15.13 0.00 44.68 3.51
735 814 8.517056 GTTTCTAAATTTTTAGGAACGGATGGA 58.483 33.333 15.13 0.00 44.68 3.41
736 815 8.638629 TTCTAAATTTTTAGGAACGGATGGAA 57.361 30.769 9.56 0.00 40.35 3.53
737 816 8.276252 TCTAAATTTTTAGGAACGGATGGAAG 57.724 34.615 9.56 0.00 40.35 3.46
738 817 8.104566 TCTAAATTTTTAGGAACGGATGGAAGA 58.895 33.333 9.56 0.00 40.35 2.87
739 818 7.533289 AAATTTTTAGGAACGGATGGAAGAA 57.467 32.000 0.00 0.00 0.00 2.52
740 819 5.952526 TTTTTAGGAACGGATGGAAGAAC 57.047 39.130 0.00 0.00 0.00 3.01
741 820 4.627284 TTTAGGAACGGATGGAAGAACA 57.373 40.909 0.00 0.00 0.00 3.18
742 821 2.770164 AGGAACGGATGGAAGAACAG 57.230 50.000 0.00 0.00 0.00 3.16
743 822 1.978580 AGGAACGGATGGAAGAACAGT 59.021 47.619 0.00 0.00 0.00 3.55
744 823 2.372172 AGGAACGGATGGAAGAACAGTT 59.628 45.455 0.00 0.00 0.00 3.16
745 824 3.146847 GGAACGGATGGAAGAACAGTTT 58.853 45.455 0.00 0.00 0.00 2.66
746 825 3.568430 GGAACGGATGGAAGAACAGTTTT 59.432 43.478 0.00 0.00 0.00 2.43
747 826 4.037565 GGAACGGATGGAAGAACAGTTTTT 59.962 41.667 0.00 0.00 0.00 1.94
787 866 2.893489 GGAGAAAGCCCAATTCACACTT 59.107 45.455 0.00 0.00 0.00 3.16
792 872 2.699954 AGCCCAATTCACACTTCGTAG 58.300 47.619 0.00 0.00 0.00 3.51
936 1026 4.082523 CCACCGATCCGTGGCACT 62.083 66.667 18.44 0.00 46.52 4.40
939 1029 2.359169 ACCGATCCGTGGCACTCAT 61.359 57.895 16.72 6.98 0.00 2.90
956 1046 1.839994 TCATCCCTCCACCAATCAGAC 59.160 52.381 0.00 0.00 0.00 3.51
961 1051 2.819595 CCACCAATCAGACCCGCG 60.820 66.667 0.00 0.00 0.00 6.46
1547 1721 5.563085 CGATGGTACTCTGTAATAGTCAGGC 60.563 48.000 0.00 0.00 34.15 4.85
1697 1950 4.847198 TGCTATGATCCTGTTTGTGTGAT 58.153 39.130 0.00 0.00 0.00 3.06
1784 2066 5.822519 TGTAAAACTCTGCAGACAATGACTT 59.177 36.000 13.74 5.04 0.00 3.01
1853 2141 3.005897 TCAGCTATCGGTTTATGAGGCTC 59.994 47.826 7.79 7.79 0.00 4.70
1871 2159 4.366684 GTGGCCAAGGGGAGGGTG 62.367 72.222 7.24 0.00 35.59 4.61
1875 2163 4.722700 CCAAGGGGAGGGTGCGTG 62.723 72.222 0.00 0.00 35.59 5.34
1930 2221 4.642885 TCGAGTACATGTACATGGTGATGA 59.357 41.667 33.32 23.17 42.91 2.92
1931 2222 5.301805 TCGAGTACATGTACATGGTGATGAT 59.698 40.000 33.32 16.97 42.91 2.45
1933 2224 5.614308 AGTACATGTACATGGTGATGATGG 58.386 41.667 33.32 10.27 42.91 3.51
1934 2225 3.216800 ACATGTACATGGTGATGATGGC 58.783 45.455 33.32 0.00 42.91 4.40
1935 2226 1.952193 TGTACATGGTGATGATGGCG 58.048 50.000 0.00 0.00 33.36 5.69
1936 2227 0.588252 GTACATGGTGATGATGGCGC 59.412 55.000 0.00 0.00 33.36 6.53
1937 2228 0.534877 TACATGGTGATGATGGCGCC 60.535 55.000 22.73 22.73 36.47 6.53
1938 2229 2.592574 ATGGTGATGATGGCGCCG 60.593 61.111 23.90 0.00 38.75 6.46
1939 2230 4.854924 TGGTGATGATGGCGCCGG 62.855 66.667 23.90 0.00 38.75 6.13
1968 2259 0.169672 CTTGAGGCAGCGTTTGGATG 59.830 55.000 0.00 0.00 34.39 3.51
1971 2262 0.659957 GAGGCAGCGTTTGGATGATC 59.340 55.000 0.00 0.00 32.47 2.92
1972 2263 0.749454 AGGCAGCGTTTGGATGATCC 60.749 55.000 4.05 4.05 32.47 3.36
1973 2264 1.728490 GGCAGCGTTTGGATGATCCC 61.728 60.000 9.36 0.00 35.03 3.85
1974 2265 0.749454 GCAGCGTTTGGATGATCCCT 60.749 55.000 9.36 0.00 35.03 4.20
1975 2266 1.019673 CAGCGTTTGGATGATCCCTG 58.980 55.000 9.36 4.70 35.03 4.45
1976 2267 0.620556 AGCGTTTGGATGATCCCTGT 59.379 50.000 9.36 0.00 35.03 4.00
1977 2268 1.017387 GCGTTTGGATGATCCCTGTC 58.983 55.000 9.36 0.00 35.03 3.51
1978 2269 1.678728 GCGTTTGGATGATCCCTGTCA 60.679 52.381 9.36 0.00 35.03 3.58
1980 2271 2.615447 CGTTTGGATGATCCCTGTCATG 59.385 50.000 9.36 0.00 38.88 3.07
1981 2272 2.954318 GTTTGGATGATCCCTGTCATGG 59.046 50.000 9.36 0.00 38.88 3.66
1982 2273 1.897473 TGGATGATCCCTGTCATGGT 58.103 50.000 9.36 0.00 38.88 3.55
1983 2274 1.491754 TGGATGATCCCTGTCATGGTG 59.508 52.381 9.36 0.00 38.88 4.17
1986 2277 0.915872 TGATCCCTGTCATGGTGGCT 60.916 55.000 0.00 0.00 0.00 4.75
1989 2280 0.915872 TCCCTGTCATGGTGGCTGAT 60.916 55.000 0.00 0.00 0.00 2.90
1990 2281 0.465097 CCCTGTCATGGTGGCTGATC 60.465 60.000 0.00 0.00 0.00 2.92
1991 2282 0.465097 CCTGTCATGGTGGCTGATCC 60.465 60.000 0.00 0.00 0.00 3.36
1992 2283 0.253894 CTGTCATGGTGGCTGATCCA 59.746 55.000 0.00 0.00 44.18 3.41
2000 2291 1.153025 TGGCTGATCCATGCTGCTC 60.153 57.895 0.00 0.00 40.72 4.26
2001 2292 1.148723 GGCTGATCCATGCTGCTCT 59.851 57.895 0.00 0.00 34.01 4.09
2003 2294 0.464013 GCTGATCCATGCTGCTCTGT 60.464 55.000 0.00 0.00 0.00 3.41
2004 2295 1.202615 GCTGATCCATGCTGCTCTGTA 60.203 52.381 0.00 0.00 0.00 2.74
2005 2296 2.756829 CTGATCCATGCTGCTCTGTAG 58.243 52.381 0.00 0.00 0.00 2.74
2009 2371 3.808466 TCCATGCTGCTCTGTAGTTAG 57.192 47.619 0.00 0.00 0.00 2.34
2013 2375 5.046529 CCATGCTGCTCTGTAGTTAGTTAG 58.953 45.833 0.00 0.00 0.00 2.34
2016 2378 4.109050 GCTGCTCTGTAGTTAGTTAGCTG 58.891 47.826 0.00 0.00 33.60 4.24
2019 2381 5.710984 TGCTCTGTAGTTAGTTAGCTGTTC 58.289 41.667 0.00 0.00 0.00 3.18
2020 2382 4.794246 GCTCTGTAGTTAGTTAGCTGTTCG 59.206 45.833 0.00 0.00 0.00 3.95
2021 2383 5.619533 GCTCTGTAGTTAGTTAGCTGTTCGT 60.620 44.000 0.00 0.00 0.00 3.85
2022 2384 6.402983 GCTCTGTAGTTAGTTAGCTGTTCGTA 60.403 42.308 0.00 0.00 0.00 3.43
2023 2385 6.835914 TCTGTAGTTAGTTAGCTGTTCGTAC 58.164 40.000 0.00 0.00 0.00 3.67
2027 2389 7.819415 TGTAGTTAGTTAGCTGTTCGTACTCTA 59.181 37.037 0.00 0.00 0.00 2.43
2030 2392 7.551974 AGTTAGTTAGCTGTTCGTACTCTATCA 59.448 37.037 0.00 0.00 0.00 2.15
2031 2393 6.945938 AGTTAGCTGTTCGTACTCTATCAT 57.054 37.500 0.00 0.00 0.00 2.45
2036 2398 5.358442 AGCTGTTCGTACTCTATCATCTTGT 59.642 40.000 0.00 0.00 0.00 3.16
2039 2401 7.166142 GCTGTTCGTACTCTATCATCTTGTAAC 59.834 40.741 0.00 0.00 0.00 2.50
2040 2402 8.277490 TGTTCGTACTCTATCATCTTGTAACT 57.723 34.615 0.00 0.00 0.00 2.24
2050 2486 6.932356 ATCATCTTGTAACTTATGTGCTGG 57.068 37.500 0.00 0.00 0.00 4.85
2058 2494 2.930950 ACTTATGTGCTGGTTGTGTGT 58.069 42.857 0.00 0.00 0.00 3.72
2059 2495 3.287222 ACTTATGTGCTGGTTGTGTGTT 58.713 40.909 0.00 0.00 0.00 3.32
2060 2496 3.315191 ACTTATGTGCTGGTTGTGTGTTC 59.685 43.478 0.00 0.00 0.00 3.18
2062 2498 2.700722 TGTGCTGGTTGTGTGTTCTA 57.299 45.000 0.00 0.00 0.00 2.10
2063 2499 2.285083 TGTGCTGGTTGTGTGTTCTAC 58.715 47.619 0.00 0.00 0.00 2.59
2064 2500 2.285083 GTGCTGGTTGTGTGTTCTACA 58.715 47.619 0.00 0.00 36.82 2.74
2078 2514 5.749596 TGTTCTACACAAACTGAACCATG 57.250 39.130 0.00 0.00 38.29 3.66
2079 2515 5.432645 TGTTCTACACAAACTGAACCATGA 58.567 37.500 0.00 0.00 38.29 3.07
2080 2516 6.061441 TGTTCTACACAAACTGAACCATGAT 58.939 36.000 0.00 0.00 38.29 2.45
2081 2517 6.204688 TGTTCTACACAAACTGAACCATGATC 59.795 38.462 0.00 0.00 38.29 2.92
2082 2518 6.114187 TCTACACAAACTGAACCATGATCT 57.886 37.500 0.00 0.00 0.00 2.75
2083 2519 5.934043 TCTACACAAACTGAACCATGATCTG 59.066 40.000 0.00 0.00 0.00 2.90
2116 2563 5.948992 AACTGTAAATCTCTTCAGGCAAC 57.051 39.130 0.00 0.00 32.92 4.17
2118 2565 3.334691 TGTAAATCTCTTCAGGCAACGG 58.665 45.455 0.00 0.00 46.39 4.44
2120 2567 0.326264 AATCTCTTCAGGCAACGGCT 59.674 50.000 0.00 0.00 46.39 5.52
2130 2577 1.166531 GGCAACGGCTCTGAACTTGT 61.167 55.000 0.00 0.00 40.87 3.16
2131 2578 0.040958 GCAACGGCTCTGAACTTGTG 60.041 55.000 0.00 0.00 36.96 3.33
2132 2579 0.040958 CAACGGCTCTGAACTTGTGC 60.041 55.000 0.00 0.00 0.00 4.57
2136 2583 1.818642 GGCTCTGAACTTGTGCAGAT 58.181 50.000 11.47 0.00 40.11 2.90
2138 2585 2.420642 GCTCTGAACTTGTGCAGATGA 58.579 47.619 11.47 0.00 40.11 2.92
2143 2590 5.311265 TCTGAACTTGTGCAGATGATTCTT 58.689 37.500 7.33 0.00 36.31 2.52
2148 2595 6.152932 ACTTGTGCAGATGATTCTTTGTTT 57.847 33.333 3.58 0.00 0.00 2.83
2150 2597 5.771153 TGTGCAGATGATTCTTTGTTTCA 57.229 34.783 0.00 0.00 0.00 2.69
2154 2601 7.383029 TGTGCAGATGATTCTTTGTTTCATTTC 59.617 33.333 0.00 0.00 30.48 2.17
2155 2602 7.597743 GTGCAGATGATTCTTTGTTTCATTTCT 59.402 33.333 0.00 0.00 30.48 2.52
2235 2682 4.344865 GTGGGGCTTGAGGCGGAA 62.345 66.667 0.00 0.00 42.94 4.30
2237 2684 4.035102 GGGGCTTGAGGCGGAAGT 62.035 66.667 0.00 0.00 42.94 3.01
2238 2685 2.747855 GGGCTTGAGGCGGAAGTG 60.748 66.667 0.00 0.00 42.94 3.16
2240 2687 1.743252 GGCTTGAGGCGGAAGTGAG 60.743 63.158 1.35 0.00 42.94 3.51
2241 2688 1.293498 GCTTGAGGCGGAAGTGAGA 59.707 57.895 1.35 0.00 0.00 3.27
2242 2689 1.016653 GCTTGAGGCGGAAGTGAGAC 61.017 60.000 1.35 0.00 0.00 3.36
2243 2690 0.734253 CTTGAGGCGGAAGTGAGACG 60.734 60.000 0.00 0.00 0.00 4.18
2247 2694 4.719369 GCGGAAGTGAGACGGCGT 62.719 66.667 14.65 14.65 0.00 5.68
2250 2697 2.022129 GGAAGTGAGACGGCGTGTG 61.022 63.158 21.19 0.00 0.00 3.82
2260 2707 4.261888 GGCGTGTGACGAGAATGT 57.738 55.556 0.00 0.00 46.05 2.71
2291 2738 8.561738 TCTTCAGACATAAATTTAGGTTCACC 57.438 34.615 15.98 4.46 0.00 4.02
2294 2741 7.110155 TCAGACATAAATTTAGGTTCACCTCC 58.890 38.462 15.98 2.83 44.77 4.30
2299 2746 7.404980 ACATAAATTTAGGTTCACCTCCTCCTA 59.595 37.037 9.62 0.00 44.77 2.94
2300 2747 6.713731 AAATTTAGGTTCACCTCCTCCTAA 57.286 37.500 0.39 0.00 44.77 2.69
2302 2749 6.910259 ATTTAGGTTCACCTCCTCCTAATT 57.090 37.500 0.39 0.00 44.77 1.40
2303 2750 8.401955 AATTTAGGTTCACCTCCTCCTAATTA 57.598 34.615 0.39 0.00 44.77 1.40
2304 2751 7.433537 TTTAGGTTCACCTCCTCCTAATTAG 57.566 40.000 0.39 5.43 44.77 1.73
2305 2752 4.299485 AGGTTCACCTCCTCCTAATTAGG 58.701 47.826 23.54 23.54 44.77 2.69
2308 2755 3.309296 TCACCTCCTCCTAATTAGGCTG 58.691 50.000 24.52 18.51 43.31 4.85
2309 2756 2.370189 CACCTCCTCCTAATTAGGCTGG 59.630 54.545 24.52 24.97 43.31 4.85
2314 2761 2.509964 CCTCCTAATTAGGCTGGGTTGT 59.490 50.000 24.52 0.00 43.31 3.32
2317 2764 3.589735 TCCTAATTAGGCTGGGTTGTTCA 59.410 43.478 24.52 2.14 43.31 3.18
2319 2766 3.806949 AATTAGGCTGGGTTGTTCAGA 57.193 42.857 0.00 0.00 34.36 3.27
2321 2768 3.806949 TTAGGCTGGGTTGTTCAGAAT 57.193 42.857 0.00 0.00 34.36 2.40
2326 2773 3.412386 GCTGGGTTGTTCAGAATGTAGT 58.588 45.455 0.00 0.00 37.40 2.73
2328 2775 5.001232 GCTGGGTTGTTCAGAATGTAGTTA 58.999 41.667 0.00 0.00 37.40 2.24
2329 2776 5.122396 GCTGGGTTGTTCAGAATGTAGTTAG 59.878 44.000 0.00 0.00 37.40 2.34
2330 2777 6.428083 TGGGTTGTTCAGAATGTAGTTAGA 57.572 37.500 0.00 0.00 37.40 2.10
2332 2779 6.878923 TGGGTTGTTCAGAATGTAGTTAGATG 59.121 38.462 0.00 0.00 37.40 2.90
2333 2780 6.879458 GGGTTGTTCAGAATGTAGTTAGATGT 59.121 38.462 0.00 0.00 37.40 3.06
2335 2782 8.443937 GGTTGTTCAGAATGTAGTTAGATGTTC 58.556 37.037 0.00 0.00 37.40 3.18
2337 2784 8.763049 TGTTCAGAATGTAGTTAGATGTTCAG 57.237 34.615 0.00 0.00 37.40 3.02
2338 2785 7.819415 TGTTCAGAATGTAGTTAGATGTTCAGG 59.181 37.037 0.00 0.00 37.40 3.86
2339 2786 7.718334 TCAGAATGTAGTTAGATGTTCAGGA 57.282 36.000 0.00 0.00 37.40 3.86
2340 2787 8.311395 TCAGAATGTAGTTAGATGTTCAGGAT 57.689 34.615 0.00 0.00 37.40 3.24
2342 2789 6.989169 AGAATGTAGTTAGATGTTCAGGATGC 59.011 38.462 0.00 0.00 34.76 3.91
2343 2790 5.675684 TGTAGTTAGATGTTCAGGATGCA 57.324 39.130 0.00 0.00 34.76 3.96
2347 2794 6.506500 AGTTAGATGTTCAGGATGCAAAAG 57.493 37.500 0.00 0.00 34.76 2.27
2348 2795 6.006449 AGTTAGATGTTCAGGATGCAAAAGT 58.994 36.000 0.00 0.00 34.76 2.66
2350 2797 3.508793 AGATGTTCAGGATGCAAAAGTGG 59.491 43.478 0.00 0.00 34.76 4.00
2351 2798 2.665165 TGTTCAGGATGCAAAAGTGGT 58.335 42.857 0.00 0.00 34.76 4.16
2352 2799 2.622942 TGTTCAGGATGCAAAAGTGGTC 59.377 45.455 0.00 0.00 34.76 4.02
2353 2800 2.622942 GTTCAGGATGCAAAAGTGGTCA 59.377 45.455 0.00 0.00 34.76 4.02
2355 2802 2.622942 TCAGGATGCAAAAGTGGTCAAC 59.377 45.455 0.00 0.00 34.76 3.18
2356 2803 1.963515 AGGATGCAAAAGTGGTCAACC 59.036 47.619 0.00 0.00 0.00 3.77
2357 2804 1.686052 GGATGCAAAAGTGGTCAACCA 59.314 47.619 0.00 0.00 45.30 3.67
2370 2817 4.665451 TGGTCAACCAATGAATCACTGAT 58.335 39.130 0.00 0.00 44.35 2.90
2371 2818 5.814481 TGGTCAACCAATGAATCACTGATA 58.186 37.500 0.00 0.00 44.35 2.15
2372 2819 5.882000 TGGTCAACCAATGAATCACTGATAG 59.118 40.000 0.00 0.00 44.35 2.08
2373 2820 6.115446 GGTCAACCAATGAATCACTGATAGA 58.885 40.000 0.00 0.00 40.50 1.98
2374 2821 6.599244 GGTCAACCAATGAATCACTGATAGAA 59.401 38.462 0.00 0.00 40.50 2.10
2375 2822 7.414540 GGTCAACCAATGAATCACTGATAGAAC 60.415 40.741 0.00 0.00 40.50 3.01
2376 2823 7.119699 GTCAACCAATGAATCACTGATAGAACA 59.880 37.037 0.00 0.00 40.50 3.18
2377 2824 7.665145 TCAACCAATGAATCACTGATAGAACAA 59.335 33.333 0.00 0.00 34.30 2.83
2379 2826 6.094603 ACCAATGAATCACTGATAGAACAAGC 59.905 38.462 0.00 0.00 0.00 4.01
2380 2827 6.094464 CCAATGAATCACTGATAGAACAAGCA 59.906 38.462 0.00 0.00 0.00 3.91
2382 2829 6.915544 TGAATCACTGATAGAACAAGCATC 57.084 37.500 0.00 0.00 0.00 3.91
2383 2830 6.408869 TGAATCACTGATAGAACAAGCATCA 58.591 36.000 0.00 0.00 0.00 3.07
2386 2833 5.981174 TCACTGATAGAACAAGCATCATCA 58.019 37.500 0.00 0.00 0.00 3.07
2387 2834 6.589135 TCACTGATAGAACAAGCATCATCAT 58.411 36.000 0.00 0.00 0.00 2.45
2388 2835 6.704937 TCACTGATAGAACAAGCATCATCATC 59.295 38.462 0.00 0.00 0.00 2.92
2389 2836 6.482308 CACTGATAGAACAAGCATCATCATCA 59.518 38.462 0.00 0.00 0.00 3.07
2392 2839 7.871853 TGATAGAACAAGCATCATCATCATTG 58.128 34.615 0.00 0.00 0.00 2.82
2393 2840 4.933330 AGAACAAGCATCATCATCATTGC 58.067 39.130 0.00 0.00 35.34 3.56
2394 2841 3.349488 ACAAGCATCATCATCATTGCG 57.651 42.857 0.00 0.00 40.00 4.85
2396 2843 3.042887 CAAGCATCATCATCATTGCGTG 58.957 45.455 0.00 0.00 40.00 5.34
2397 2844 2.567985 AGCATCATCATCATTGCGTGA 58.432 42.857 0.00 0.00 42.06 4.35
2398 2845 2.946990 AGCATCATCATCATTGCGTGAA 59.053 40.909 0.00 0.00 40.97 3.18
2399 2846 3.568430 AGCATCATCATCATTGCGTGAAT 59.432 39.130 0.00 0.00 40.97 2.57
2400 2847 3.912563 GCATCATCATCATTGCGTGAATC 59.087 43.478 0.00 0.00 40.97 2.52
2404 2851 4.817464 TCATCATCATTGCGTGAATCATCA 59.183 37.500 0.00 0.00 40.97 3.07
2405 2852 5.472137 TCATCATCATTGCGTGAATCATCAT 59.528 36.000 0.00 0.00 40.97 2.45
2406 2853 6.651643 TCATCATCATTGCGTGAATCATCATA 59.348 34.615 0.00 0.00 40.97 2.15
2407 2854 7.335924 TCATCATCATTGCGTGAATCATCATAT 59.664 33.333 0.00 0.00 40.97 1.78
2408 2855 7.443259 TCATCATTGCGTGAATCATCATATT 57.557 32.000 0.00 0.00 40.97 1.28
2409 2856 7.878036 TCATCATTGCGTGAATCATCATATTT 58.122 30.769 0.00 0.00 40.97 1.40
2410 2857 8.019094 TCATCATTGCGTGAATCATCATATTTC 58.981 33.333 0.00 0.00 40.97 2.17
2412 2859 7.705214 TCATTGCGTGAATCATCATATTTCAA 58.295 30.769 0.00 0.00 38.01 2.69
2415 2862 7.319142 TGCGTGAATCATCATATTTCAAGAA 57.681 32.000 4.76 0.00 38.01 2.52
2416 2863 7.933396 TGCGTGAATCATCATATTTCAAGAAT 58.067 30.769 4.76 0.00 38.01 2.40
2417 2864 8.071967 TGCGTGAATCATCATATTTCAAGAATC 58.928 33.333 4.76 0.00 38.01 2.52
2418 2865 8.071967 GCGTGAATCATCATATTTCAAGAATCA 58.928 33.333 4.76 0.00 38.01 2.57
2419 2866 9.378597 CGTGAATCATCATATTTCAAGAATCAC 57.621 33.333 0.00 0.00 38.01 3.06
2422 2869 9.674824 GAATCATCATATTTCAAGAATCACACC 57.325 33.333 0.00 0.00 0.00 4.16
2423 2870 8.991783 ATCATCATATTTCAAGAATCACACCT 57.008 30.769 0.00 0.00 0.00 4.00
2424 2871 8.812513 TCATCATATTTCAAGAATCACACCTT 57.187 30.769 0.00 0.00 0.00 3.50
2427 2874 8.498054 TCATATTTCAAGAATCACACCTTCTC 57.502 34.615 0.00 0.00 31.83 2.87
2428 2875 8.324306 TCATATTTCAAGAATCACACCTTCTCT 58.676 33.333 0.00 0.00 31.83 3.10
2429 2876 8.610896 CATATTTCAAGAATCACACCTTCTCTC 58.389 37.037 0.00 0.00 31.83 3.20
2430 2877 5.551305 TTCAAGAATCACACCTTCTCTCA 57.449 39.130 0.00 0.00 31.83 3.27
2431 2878 5.551305 TCAAGAATCACACCTTCTCTCAA 57.449 39.130 0.00 0.00 31.83 3.02
2432 2879 5.545588 TCAAGAATCACACCTTCTCTCAAG 58.454 41.667 0.00 0.00 31.83 3.02
2433 2880 5.305386 TCAAGAATCACACCTTCTCTCAAGA 59.695 40.000 0.00 0.00 31.83 3.02
2435 2882 6.179906 AGAATCACACCTTCTCTCAAGAAA 57.820 37.500 0.00 0.00 40.95 2.52
2436 2883 6.777782 AGAATCACACCTTCTCTCAAGAAAT 58.222 36.000 0.00 0.00 40.95 2.17
2438 2885 5.551305 TCACACCTTCTCTCAAGAAATCA 57.449 39.130 0.00 0.00 40.95 2.57
2439 2886 5.545588 TCACACCTTCTCTCAAGAAATCAG 58.454 41.667 0.00 0.00 40.95 2.90
2440 2887 4.694509 CACACCTTCTCTCAAGAAATCAGG 59.305 45.833 0.00 0.00 40.95 3.86
2441 2888 3.688673 CACCTTCTCTCAAGAAATCAGGC 59.311 47.826 0.00 0.00 40.95 4.85
2442 2889 3.328931 ACCTTCTCTCAAGAAATCAGGCA 59.671 43.478 0.00 0.00 40.95 4.75
2443 2890 3.940221 CCTTCTCTCAAGAAATCAGGCAG 59.060 47.826 0.00 0.00 40.95 4.85
2445 2892 2.238144 TCTCTCAAGAAATCAGGCAGGG 59.762 50.000 0.00 0.00 0.00 4.45
2446 2893 1.101331 CTCAAGAAATCAGGCAGGGC 58.899 55.000 0.00 0.00 0.00 5.19
2448 2895 0.815734 CAAGAAATCAGGCAGGGCAG 59.184 55.000 0.00 0.00 0.00 4.85
2449 2896 0.324091 AAGAAATCAGGCAGGGCAGG 60.324 55.000 0.00 0.00 0.00 4.85
2450 2897 1.755783 GAAATCAGGCAGGGCAGGG 60.756 63.158 0.00 0.00 0.00 4.45
2451 2898 2.215451 GAAATCAGGCAGGGCAGGGA 62.215 60.000 0.00 0.00 0.00 4.20
2452 2899 1.803453 AAATCAGGCAGGGCAGGGAA 61.803 55.000 0.00 0.00 0.00 3.97
2463 2910 2.113139 CAGGGAACGTGTTGGCCT 59.887 61.111 3.32 0.00 39.64 5.19
2465 2912 1.528309 AGGGAACGTGTTGGCCTTG 60.528 57.895 3.32 0.00 0.00 3.61
2466 2913 1.527380 GGGAACGTGTTGGCCTTGA 60.527 57.895 3.32 0.00 0.00 3.02
2467 2914 1.515521 GGGAACGTGTTGGCCTTGAG 61.516 60.000 3.32 0.00 0.00 3.02
2468 2915 1.515521 GGAACGTGTTGGCCTTGAGG 61.516 60.000 3.32 0.00 38.53 3.86
2469 2916 0.818040 GAACGTGTTGGCCTTGAGGT 60.818 55.000 3.32 0.00 37.57 3.85
2471 2918 0.034896 ACGTGTTGGCCTTGAGGTAG 59.965 55.000 3.32 0.00 37.57 3.18
2472 2919 0.673644 CGTGTTGGCCTTGAGGTAGG 60.674 60.000 3.32 0.00 38.40 3.18
2473 2920 0.400594 GTGTTGGCCTTGAGGTAGGT 59.599 55.000 3.32 0.00 37.63 3.08
2474 2921 0.400213 TGTTGGCCTTGAGGTAGGTG 59.600 55.000 3.32 0.00 37.63 4.00
2475 2922 0.960861 GTTGGCCTTGAGGTAGGTGC 60.961 60.000 3.32 0.00 37.63 5.01
2476 2923 1.422977 TTGGCCTTGAGGTAGGTGCA 61.423 55.000 3.32 0.00 37.63 4.57
2477 2924 1.207488 TGGCCTTGAGGTAGGTGCAT 61.207 55.000 3.32 0.00 37.63 3.96
2478 2925 0.837272 GGCCTTGAGGTAGGTGCATA 59.163 55.000 0.00 0.00 37.63 3.14
2479 2926 1.475213 GGCCTTGAGGTAGGTGCATAC 60.475 57.143 0.00 0.00 37.63 2.39
2481 2928 2.743183 GCCTTGAGGTAGGTGCATACAG 60.743 54.545 0.00 0.00 37.63 2.74
2482 2929 2.158900 CCTTGAGGTAGGTGCATACAGG 60.159 54.545 0.00 0.00 0.00 4.00
2486 2933 1.008449 AGGTAGGTGCATACAGGGAGT 59.992 52.381 0.00 0.00 0.00 3.85
2487 2934 1.139058 GGTAGGTGCATACAGGGAGTG 59.861 57.143 0.00 0.00 0.00 3.51
2488 2935 0.830648 TAGGTGCATACAGGGAGTGC 59.169 55.000 0.00 0.00 39.26 4.40
2489 2936 0.911525 AGGTGCATACAGGGAGTGCT 60.912 55.000 0.00 0.00 39.52 4.40
2490 2937 0.462759 GGTGCATACAGGGAGTGCTC 60.463 60.000 0.00 0.00 39.52 4.26
2491 2938 0.807667 GTGCATACAGGGAGTGCTCG 60.808 60.000 0.00 0.00 39.52 5.03
2493 2940 1.227380 CATACAGGGAGTGCTCGGC 60.227 63.158 0.00 0.00 0.00 5.54
2494 2941 1.685765 ATACAGGGAGTGCTCGGCA 60.686 57.895 0.00 0.00 35.60 5.69
2495 2942 1.050988 ATACAGGGAGTGCTCGGCAT 61.051 55.000 1.90 0.00 41.91 4.40
2496 2943 1.676678 TACAGGGAGTGCTCGGCATC 61.677 60.000 1.90 2.10 41.91 3.91
2497 2944 3.474570 AGGGAGTGCTCGGCATCC 61.475 66.667 13.63 13.63 41.91 3.51
2509 2956 3.343972 GCATCCGCCGCATAACAT 58.656 55.556 0.00 0.00 0.00 2.71
2510 2957 1.654220 GCATCCGCCGCATAACATT 59.346 52.632 0.00 0.00 0.00 2.71
2511 2958 0.385974 GCATCCGCCGCATAACATTC 60.386 55.000 0.00 0.00 0.00 2.67
2512 2959 0.238289 CATCCGCCGCATAACATTCC 59.762 55.000 0.00 0.00 0.00 3.01
2513 2960 1.227999 ATCCGCCGCATAACATTCCG 61.228 55.000 0.00 0.00 0.00 4.30
2514 2961 2.631428 CGCCGCATAACATTCCGG 59.369 61.111 0.00 0.00 43.38 5.14
2516 2963 3.030652 CCGCATAACATTCCGGCC 58.969 61.111 0.00 0.00 33.77 6.13
2517 2964 1.821759 CCGCATAACATTCCGGCCA 60.822 57.895 2.24 0.00 33.77 5.36
2518 2965 1.380403 CCGCATAACATTCCGGCCAA 61.380 55.000 2.24 0.00 33.77 4.52
2519 2966 0.029300 CGCATAACATTCCGGCCAAG 59.971 55.000 2.24 0.00 0.00 3.61
2520 2967 0.249031 GCATAACATTCCGGCCAAGC 60.249 55.000 2.24 0.00 0.00 4.01
2521 2968 1.102154 CATAACATTCCGGCCAAGCA 58.898 50.000 2.24 0.00 0.00 3.91
2522 2969 1.476085 CATAACATTCCGGCCAAGCAA 59.524 47.619 2.24 0.00 0.00 3.91
2523 2970 1.846007 TAACATTCCGGCCAAGCAAT 58.154 45.000 2.24 0.00 0.00 3.56
2524 2971 0.532115 AACATTCCGGCCAAGCAATC 59.468 50.000 2.24 0.00 0.00 2.67
2525 2972 1.322538 ACATTCCGGCCAAGCAATCC 61.323 55.000 2.24 0.00 0.00 3.01
2526 2973 2.120909 ATTCCGGCCAAGCAATCCG 61.121 57.895 2.24 0.00 42.58 4.18
2527 2974 2.837031 ATTCCGGCCAAGCAATCCGT 62.837 55.000 2.24 0.00 41.46 4.69
2528 2975 3.508840 CCGGCCAAGCAATCCGTC 61.509 66.667 2.24 0.00 41.46 4.79
2529 2976 2.745884 CGGCCAAGCAATCCGTCA 60.746 61.111 2.24 0.00 38.47 4.35
2530 2977 2.753966 CGGCCAAGCAATCCGTCAG 61.754 63.158 2.24 0.00 38.47 3.51
2531 2978 1.377202 GGCCAAGCAATCCGTCAGA 60.377 57.895 0.00 0.00 0.00 3.27
2532 2979 1.372087 GGCCAAGCAATCCGTCAGAG 61.372 60.000 0.00 0.00 0.00 3.35
2533 2980 1.986575 GCCAAGCAATCCGTCAGAGC 61.987 60.000 0.00 0.00 0.00 4.09
2534 2981 0.674581 CCAAGCAATCCGTCAGAGCA 60.675 55.000 0.00 0.00 0.00 4.26
2535 2982 1.159285 CAAGCAATCCGTCAGAGCAA 58.841 50.000 0.00 0.00 0.00 3.91
2536 2983 1.129998 CAAGCAATCCGTCAGAGCAAG 59.870 52.381 0.00 0.00 0.00 4.01
2537 2984 0.322975 AGCAATCCGTCAGAGCAAGT 59.677 50.000 0.00 0.00 0.00 3.16
2538 2985 0.723981 GCAATCCGTCAGAGCAAGTC 59.276 55.000 0.00 0.00 0.00 3.01
2539 2986 1.674221 GCAATCCGTCAGAGCAAGTCT 60.674 52.381 0.00 0.00 35.00 3.24
2540 2987 2.266554 CAATCCGTCAGAGCAAGTCTC 58.733 52.381 0.00 0.00 42.21 3.36
2541 2988 0.820871 ATCCGTCAGAGCAAGTCTCC 59.179 55.000 0.00 0.00 42.90 3.71
2542 2989 0.251386 TCCGTCAGAGCAAGTCTCCT 60.251 55.000 0.00 0.00 42.90 3.69
2543 2990 0.172352 CCGTCAGAGCAAGTCTCCTC 59.828 60.000 0.00 0.00 42.90 3.71
2544 2991 1.173043 CGTCAGAGCAAGTCTCCTCT 58.827 55.000 0.00 0.00 42.90 3.69
2545 2992 1.543802 CGTCAGAGCAAGTCTCCTCTT 59.456 52.381 1.31 0.00 42.90 2.85
2546 2993 2.415357 CGTCAGAGCAAGTCTCCTCTTC 60.415 54.545 1.31 0.00 42.90 2.87
2547 2994 2.825532 GTCAGAGCAAGTCTCCTCTTCT 59.174 50.000 1.31 0.00 42.90 2.85
2548 2995 3.088532 TCAGAGCAAGTCTCCTCTTCTC 58.911 50.000 1.31 0.00 42.90 2.87
2549 2996 3.091545 CAGAGCAAGTCTCCTCTTCTCT 58.908 50.000 1.31 0.00 42.90 3.10
2550 2997 3.511146 CAGAGCAAGTCTCCTCTTCTCTT 59.489 47.826 1.31 0.00 42.90 2.85
2551 2998 4.021192 CAGAGCAAGTCTCCTCTTCTCTTT 60.021 45.833 1.31 0.00 42.90 2.52
2552 2999 4.592778 AGAGCAAGTCTCCTCTTCTCTTTT 59.407 41.667 0.00 0.00 42.90 2.27
2553 3000 4.893608 AGCAAGTCTCCTCTTCTCTTTTC 58.106 43.478 0.00 0.00 0.00 2.29
2554 3001 4.592778 AGCAAGTCTCCTCTTCTCTTTTCT 59.407 41.667 0.00 0.00 0.00 2.52
2555 3002 5.071653 AGCAAGTCTCCTCTTCTCTTTTCTT 59.928 40.000 0.00 0.00 0.00 2.52
2556 3003 5.408299 GCAAGTCTCCTCTTCTCTTTTCTTC 59.592 44.000 0.00 0.00 0.00 2.87
2557 3004 6.741240 GCAAGTCTCCTCTTCTCTTTTCTTCT 60.741 42.308 0.00 0.00 0.00 2.85
2558 3005 6.590234 AGTCTCCTCTTCTCTTTTCTTCTC 57.410 41.667 0.00 0.00 0.00 2.87
2559 3006 5.480422 AGTCTCCTCTTCTCTTTTCTTCTCC 59.520 44.000 0.00 0.00 0.00 3.71
2560 3007 5.245075 GTCTCCTCTTCTCTTTTCTTCTCCA 59.755 44.000 0.00 0.00 0.00 3.86
2561 3008 6.022315 TCTCCTCTTCTCTTTTCTTCTCCAT 58.978 40.000 0.00 0.00 0.00 3.41
2562 3009 7.123547 GTCTCCTCTTCTCTTTTCTTCTCCATA 59.876 40.741 0.00 0.00 0.00 2.74
2563 3010 7.123547 TCTCCTCTTCTCTTTTCTTCTCCATAC 59.876 40.741 0.00 0.00 0.00 2.39
2564 3011 6.726299 TCCTCTTCTCTTTTCTTCTCCATACA 59.274 38.462 0.00 0.00 0.00 2.29
2565 3012 7.235606 TCCTCTTCTCTTTTCTTCTCCATACAA 59.764 37.037 0.00 0.00 0.00 2.41
2566 3013 7.548780 CCTCTTCTCTTTTCTTCTCCATACAAG 59.451 40.741 0.00 0.00 0.00 3.16
2567 3014 7.390027 TCTTCTCTTTTCTTCTCCATACAAGG 58.610 38.462 0.00 0.00 0.00 3.61
2568 3015 6.688073 TCTCTTTTCTTCTCCATACAAGGT 57.312 37.500 0.00 0.00 0.00 3.50
2569 3016 6.702329 TCTCTTTTCTTCTCCATACAAGGTC 58.298 40.000 0.00 0.00 0.00 3.85
2570 3017 5.805728 TCTTTTCTTCTCCATACAAGGTCC 58.194 41.667 0.00 0.00 0.00 4.46
2571 3018 5.309543 TCTTTTCTTCTCCATACAAGGTCCA 59.690 40.000 0.00 0.00 0.00 4.02
2572 3019 5.576563 TTTCTTCTCCATACAAGGTCCAA 57.423 39.130 0.00 0.00 0.00 3.53
2573 3020 5.576563 TTCTTCTCCATACAAGGTCCAAA 57.423 39.130 0.00 0.00 0.00 3.28
2574 3021 5.576563 TCTTCTCCATACAAGGTCCAAAA 57.423 39.130 0.00 0.00 0.00 2.44
2575 3022 6.139679 TCTTCTCCATACAAGGTCCAAAAT 57.860 37.500 0.00 0.00 0.00 1.82
2576 3023 6.180472 TCTTCTCCATACAAGGTCCAAAATC 58.820 40.000 0.00 0.00 0.00 2.17
2577 3024 4.855340 TCTCCATACAAGGTCCAAAATCC 58.145 43.478 0.00 0.00 0.00 3.01
2578 3025 4.540099 TCTCCATACAAGGTCCAAAATCCT 59.460 41.667 0.00 0.00 35.34 3.24
2579 3026 4.855340 TCCATACAAGGTCCAAAATCCTC 58.145 43.478 0.00 0.00 33.09 3.71
2580 3027 3.627577 CCATACAAGGTCCAAAATCCTCG 59.372 47.826 0.00 0.00 33.09 4.63
2581 3028 2.200373 ACAAGGTCCAAAATCCTCGG 57.800 50.000 0.00 0.00 33.09 4.63
2582 3029 1.423921 ACAAGGTCCAAAATCCTCGGT 59.576 47.619 0.00 0.00 33.09 4.69
2583 3030 2.084546 CAAGGTCCAAAATCCTCGGTC 58.915 52.381 0.00 0.00 33.09 4.79
2584 3031 0.618981 AGGTCCAAAATCCTCGGTCC 59.381 55.000 0.00 0.00 0.00 4.46
2585 3032 0.326927 GGTCCAAAATCCTCGGTCCA 59.673 55.000 0.00 0.00 0.00 4.02
2586 3033 1.679032 GGTCCAAAATCCTCGGTCCAG 60.679 57.143 0.00 0.00 0.00 3.86
2587 3034 0.035439 TCCAAAATCCTCGGTCCAGC 60.035 55.000 0.00 0.00 0.00 4.85
2588 3035 0.322456 CCAAAATCCTCGGTCCAGCA 60.322 55.000 0.00 0.00 0.00 4.41
2589 3036 1.089920 CAAAATCCTCGGTCCAGCAG 58.910 55.000 0.00 0.00 0.00 4.24
2590 3037 0.693049 AAAATCCTCGGTCCAGCAGT 59.307 50.000 0.00 0.00 0.00 4.40
2591 3038 1.568504 AAATCCTCGGTCCAGCAGTA 58.431 50.000 0.00 0.00 0.00 2.74
2592 3039 1.568504 AATCCTCGGTCCAGCAGTAA 58.431 50.000 0.00 0.00 0.00 2.24
2593 3040 1.115467 ATCCTCGGTCCAGCAGTAAG 58.885 55.000 0.00 0.00 0.00 2.34
2594 3041 0.251653 TCCTCGGTCCAGCAGTAAGT 60.252 55.000 0.00 0.00 0.00 2.24
2595 3042 0.108615 CCTCGGTCCAGCAGTAAGTG 60.109 60.000 0.00 0.00 0.00 3.16
2596 3043 0.888619 CTCGGTCCAGCAGTAAGTGA 59.111 55.000 0.00 0.00 0.00 3.41
2597 3044 1.478510 CTCGGTCCAGCAGTAAGTGAT 59.521 52.381 0.00 0.00 0.00 3.06
2598 3045 1.204704 TCGGTCCAGCAGTAAGTGATG 59.795 52.381 0.00 0.00 42.62 3.07
2599 3046 1.066858 CGGTCCAGCAGTAAGTGATGT 60.067 52.381 0.00 0.00 41.29 3.06
2600 3047 2.350522 GGTCCAGCAGTAAGTGATGTG 58.649 52.381 0.00 0.00 41.29 3.21
2601 3048 2.289694 GGTCCAGCAGTAAGTGATGTGT 60.290 50.000 0.00 0.00 41.29 3.72
2602 3049 2.738846 GTCCAGCAGTAAGTGATGTGTG 59.261 50.000 0.00 0.00 41.29 3.82
2603 3050 1.466167 CCAGCAGTAAGTGATGTGTGC 59.534 52.381 0.00 0.00 41.29 4.57
2604 3051 2.420642 CAGCAGTAAGTGATGTGTGCT 58.579 47.619 0.00 0.00 41.89 4.40
2605 3052 2.810274 CAGCAGTAAGTGATGTGTGCTT 59.190 45.455 0.00 0.00 39.20 3.91
2606 3053 2.810274 AGCAGTAAGTGATGTGTGCTTG 59.190 45.455 0.00 0.00 38.04 4.01
2607 3054 2.666619 GCAGTAAGTGATGTGTGCTTGC 60.667 50.000 0.00 0.00 0.00 4.01
2608 3055 2.549329 CAGTAAGTGATGTGTGCTTGCA 59.451 45.455 0.00 0.00 0.00 4.08
2609 3056 2.549754 AGTAAGTGATGTGTGCTTGCAC 59.450 45.455 17.73 17.73 39.65 4.57
2610 3057 1.683943 AAGTGATGTGTGCTTGCACT 58.316 45.000 23.53 6.50 41.19 4.40
2611 3058 1.683943 AGTGATGTGTGCTTGCACTT 58.316 45.000 23.53 10.73 36.49 3.16
2612 3059 1.335810 AGTGATGTGTGCTTGCACTTG 59.664 47.619 23.53 0.00 36.49 3.16
2613 3060 0.031043 TGATGTGTGCTTGCACTTGC 59.969 50.000 23.53 14.95 39.89 4.01
2641 3088 1.878953 TTTTTCGTCCAGGAGTGAGC 58.121 50.000 0.00 0.00 0.00 4.26
2642 3089 0.756294 TTTTCGTCCAGGAGTGAGCA 59.244 50.000 0.00 0.00 0.00 4.26
2643 3090 0.976641 TTTCGTCCAGGAGTGAGCAT 59.023 50.000 0.00 0.00 0.00 3.79
2644 3091 1.847328 TTCGTCCAGGAGTGAGCATA 58.153 50.000 0.00 0.00 0.00 3.14
2645 3092 1.103803 TCGTCCAGGAGTGAGCATAC 58.896 55.000 0.00 0.00 0.00 2.39
2646 3093 0.103208 CGTCCAGGAGTGAGCATACC 59.897 60.000 0.00 0.00 0.00 2.73
2647 3094 1.490574 GTCCAGGAGTGAGCATACCT 58.509 55.000 0.00 0.00 0.00 3.08
2648 3095 2.667470 GTCCAGGAGTGAGCATACCTA 58.333 52.381 0.00 0.00 0.00 3.08
2649 3096 3.031736 GTCCAGGAGTGAGCATACCTAA 58.968 50.000 0.00 0.00 0.00 2.69
2650 3097 3.643792 GTCCAGGAGTGAGCATACCTAAT 59.356 47.826 0.00 0.00 0.00 1.73
2651 3098 4.833380 GTCCAGGAGTGAGCATACCTAATA 59.167 45.833 0.00 0.00 0.00 0.98
2652 3099 5.482175 GTCCAGGAGTGAGCATACCTAATAT 59.518 44.000 0.00 0.00 0.00 1.28
2653 3100 6.663953 GTCCAGGAGTGAGCATACCTAATATA 59.336 42.308 0.00 0.00 0.00 0.86
2654 3101 6.663953 TCCAGGAGTGAGCATACCTAATATAC 59.336 42.308 0.00 0.00 0.00 1.47
2655 3102 6.127310 CCAGGAGTGAGCATACCTAATATACC 60.127 46.154 0.00 0.00 0.00 2.73
2656 3103 6.665680 CAGGAGTGAGCATACCTAATATACCT 59.334 42.308 0.00 0.00 0.00 3.08
2657 3104 6.893005 AGGAGTGAGCATACCTAATATACCTC 59.107 42.308 0.00 0.00 0.00 3.85
2658 3105 6.663953 GGAGTGAGCATACCTAATATACCTCA 59.336 42.308 0.00 0.00 32.50 3.86
2659 3106 7.343316 GGAGTGAGCATACCTAATATACCTCAT 59.657 40.741 0.00 0.00 35.21 2.90
2660 3107 8.299990 AGTGAGCATACCTAATATACCTCATC 57.700 38.462 0.00 0.00 35.21 2.92
2661 3108 8.119246 AGTGAGCATACCTAATATACCTCATCT 58.881 37.037 0.00 0.00 35.21 2.90
2662 3109 8.410141 GTGAGCATACCTAATATACCTCATCTC 58.590 40.741 0.00 0.00 35.21 2.75
2663 3110 8.116026 TGAGCATACCTAATATACCTCATCTCA 58.884 37.037 0.00 0.00 31.12 3.27
2664 3111 8.299990 AGCATACCTAATATACCTCATCTCAC 57.700 38.462 0.00 0.00 0.00 3.51
2665 3112 7.895962 AGCATACCTAATATACCTCATCTCACA 59.104 37.037 0.00 0.00 0.00 3.58
2666 3113 8.700051 GCATACCTAATATACCTCATCTCACAT 58.300 37.037 0.00 0.00 0.00 3.21
2670 3117 9.249053 ACCTAATATACCTCATCTCACATAGTG 57.751 37.037 0.00 0.00 34.45 2.74
2671 3118 8.194104 CCTAATATACCTCATCTCACATAGTGC 58.806 40.741 0.00 0.00 32.98 4.40
2672 3119 7.544804 AATATACCTCATCTCACATAGTGCA 57.455 36.000 0.00 0.00 32.98 4.57
2673 3120 5.876651 ATACCTCATCTCACATAGTGCAA 57.123 39.130 0.00 0.00 32.98 4.08
2674 3121 4.134379 ACCTCATCTCACATAGTGCAAG 57.866 45.455 0.00 0.00 32.98 4.01
2675 3122 3.517100 ACCTCATCTCACATAGTGCAAGT 59.483 43.478 0.00 0.00 32.98 3.16
2676 3123 4.118410 CCTCATCTCACATAGTGCAAGTC 58.882 47.826 0.00 0.00 32.98 3.01
2677 3124 4.141981 CCTCATCTCACATAGTGCAAGTCT 60.142 45.833 0.00 0.00 32.98 3.24
2678 3125 5.003692 TCATCTCACATAGTGCAAGTCTC 57.996 43.478 0.00 0.00 32.98 3.36
2679 3126 4.708909 TCATCTCACATAGTGCAAGTCTCT 59.291 41.667 0.00 0.00 32.98 3.10
2680 3127 4.710423 TCTCACATAGTGCAAGTCTCTC 57.290 45.455 0.00 0.00 32.98 3.20
2681 3128 3.445450 TCTCACATAGTGCAAGTCTCTCC 59.555 47.826 0.00 0.00 32.98 3.71
2682 3129 2.164422 TCACATAGTGCAAGTCTCTCCG 59.836 50.000 0.00 0.00 32.98 4.63
2683 3130 2.094494 CACATAGTGCAAGTCTCTCCGT 60.094 50.000 0.00 0.00 0.00 4.69
2684 3131 2.563179 ACATAGTGCAAGTCTCTCCGTT 59.437 45.455 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
361 431 5.774690 TCTGGATAGCTTTTTGTGATGGTTT 59.225 36.000 0.00 0.00 0.00 3.27
429 501 0.318441 CCTCAGTTCGTGGAAGCTCA 59.682 55.000 0.00 0.00 0.00 4.26
707 786 9.855021 CATCCGTTCCTAAAAATTTAGAAACAT 57.145 29.630 13.22 0.92 37.71 2.71
708 787 8.301002 CCATCCGTTCCTAAAAATTTAGAAACA 58.699 33.333 13.22 0.00 37.71 2.83
709 788 8.517056 TCCATCCGTTCCTAAAAATTTAGAAAC 58.483 33.333 13.22 9.15 42.05 2.78
710 789 8.638629 TCCATCCGTTCCTAAAAATTTAGAAA 57.361 30.769 13.22 0.00 42.05 2.52
711 790 8.638629 TTCCATCCGTTCCTAAAAATTTAGAA 57.361 30.769 13.22 4.74 42.05 2.10
712 791 8.104566 TCTTCCATCCGTTCCTAAAAATTTAGA 58.895 33.333 13.22 0.00 42.05 2.10
713 792 8.276252 TCTTCCATCCGTTCCTAAAAATTTAG 57.724 34.615 6.04 6.04 39.80 1.85
714 793 8.517056 GTTCTTCCATCCGTTCCTAAAAATTTA 58.483 33.333 0.00 0.00 0.00 1.40
715 794 7.014808 TGTTCTTCCATCCGTTCCTAAAAATTT 59.985 33.333 0.00 0.00 0.00 1.82
716 795 6.492087 TGTTCTTCCATCCGTTCCTAAAAATT 59.508 34.615 0.00 0.00 0.00 1.82
717 796 6.007703 TGTTCTTCCATCCGTTCCTAAAAAT 58.992 36.000 0.00 0.00 0.00 1.82
718 797 5.378332 TGTTCTTCCATCCGTTCCTAAAAA 58.622 37.500 0.00 0.00 0.00 1.94
719 798 4.975631 TGTTCTTCCATCCGTTCCTAAAA 58.024 39.130 0.00 0.00 0.00 1.52
720 799 4.041198 ACTGTTCTTCCATCCGTTCCTAAA 59.959 41.667 0.00 0.00 0.00 1.85
721 800 3.581332 ACTGTTCTTCCATCCGTTCCTAA 59.419 43.478 0.00 0.00 0.00 2.69
722 801 3.170717 ACTGTTCTTCCATCCGTTCCTA 58.829 45.455 0.00 0.00 0.00 2.94
723 802 1.978580 ACTGTTCTTCCATCCGTTCCT 59.021 47.619 0.00 0.00 0.00 3.36
724 803 2.474410 ACTGTTCTTCCATCCGTTCC 57.526 50.000 0.00 0.00 0.00 3.62
725 804 4.830826 AAAACTGTTCTTCCATCCGTTC 57.169 40.909 0.00 0.00 0.00 3.95
744 823 3.304794 CGTGGCCGGAATTTGAGTAAAAA 60.305 43.478 5.05 0.00 0.00 1.94
745 824 2.226912 CGTGGCCGGAATTTGAGTAAAA 59.773 45.455 5.05 0.00 0.00 1.52
746 825 1.807742 CGTGGCCGGAATTTGAGTAAA 59.192 47.619 5.05 0.00 0.00 2.01
747 826 1.444836 CGTGGCCGGAATTTGAGTAA 58.555 50.000 5.05 0.00 0.00 2.24
748 827 3.146783 CGTGGCCGGAATTTGAGTA 57.853 52.632 5.05 0.00 0.00 2.59
799 879 2.027377 AGACAGATGAGTTTCAGCCCAG 60.027 50.000 0.00 0.00 32.25 4.45
811 891 1.819288 GGACGTGGAGAAGACAGATGA 59.181 52.381 0.00 0.00 0.00 2.92
936 1026 1.839994 GTCTGATTGGTGGAGGGATGA 59.160 52.381 0.00 0.00 0.00 2.92
939 1029 0.914417 GGGTCTGATTGGTGGAGGGA 60.914 60.000 0.00 0.00 0.00 4.20
956 1046 3.662866 TATAGGAGGAGAGAGCGCGGG 62.663 61.905 8.83 0.00 0.00 6.13
961 1051 4.022329 GCAGAGTTTATAGGAGGAGAGAGC 60.022 50.000 0.00 0.00 0.00 4.09
1547 1721 3.314553 ACAAGACGACATAGTCCAAACG 58.685 45.455 0.00 0.00 41.83 3.60
1591 1820 5.294306 CAGATCAAAGAAGCGCCAATACTAA 59.706 40.000 2.29 0.00 0.00 2.24
1597 1826 1.806542 GACAGATCAAAGAAGCGCCAA 59.193 47.619 2.29 0.00 0.00 4.52
1697 1950 3.565307 AGCAGACCAAACCAAGATGAAA 58.435 40.909 0.00 0.00 0.00 2.69
1784 2066 6.127647 ACAGAGAAACATCTTTGCAAGTTCAA 60.128 34.615 0.00 0.00 0.00 2.69
1962 2253 2.092267 CACCATGACAGGGATCATCCAA 60.092 50.000 14.23 0.00 38.64 3.53
1968 2259 0.465097 CAGCCACCATGACAGGGATC 60.465 60.000 14.23 1.18 0.00 3.36
1971 2262 0.465097 GATCAGCCACCATGACAGGG 60.465 60.000 4.17 4.17 0.00 4.45
1972 2263 0.465097 GGATCAGCCACCATGACAGG 60.465 60.000 0.00 0.00 36.34 4.00
1973 2264 0.253894 TGGATCAGCCACCATGACAG 59.746 55.000 0.00 0.00 43.33 3.51
1974 2265 2.385777 TGGATCAGCCACCATGACA 58.614 52.632 0.00 0.00 43.33 3.58
1983 2274 1.148723 AGAGCAGCATGGATCAGCC 59.851 57.895 0.00 0.00 35.86 4.85
1986 2277 2.113807 ACTACAGAGCAGCATGGATCA 58.886 47.619 0.00 0.00 35.86 2.92
1989 2280 3.099905 ACTAACTACAGAGCAGCATGGA 58.900 45.455 0.00 0.00 35.86 3.41
1990 2281 3.533606 ACTAACTACAGAGCAGCATGG 57.466 47.619 0.00 0.00 35.86 3.66
1991 2282 4.505922 GCTAACTAACTACAGAGCAGCATG 59.494 45.833 0.00 0.00 40.87 4.06
1992 2283 4.404073 AGCTAACTAACTACAGAGCAGCAT 59.596 41.667 0.00 0.00 32.28 3.79
1993 2284 3.764434 AGCTAACTAACTACAGAGCAGCA 59.236 43.478 0.00 0.00 32.28 4.41
1994 2285 4.109050 CAGCTAACTAACTACAGAGCAGC 58.891 47.826 0.00 0.00 32.28 5.25
1995 2286 5.317733 ACAGCTAACTAACTACAGAGCAG 57.682 43.478 0.00 0.00 32.28 4.24
1996 2287 5.619309 CGAACAGCTAACTAACTACAGAGCA 60.619 44.000 0.00 0.00 32.28 4.26
1998 2289 5.940595 ACGAACAGCTAACTAACTACAGAG 58.059 41.667 0.00 0.00 0.00 3.35
2000 2291 6.840075 AGTACGAACAGCTAACTAACTACAG 58.160 40.000 0.00 0.00 0.00 2.74
2001 2292 6.652481 AGAGTACGAACAGCTAACTAACTACA 59.348 38.462 0.00 0.00 0.00 2.74
2003 2294 8.954950 ATAGAGTACGAACAGCTAACTAACTA 57.045 34.615 0.00 0.00 0.00 2.24
2004 2295 7.551974 TGATAGAGTACGAACAGCTAACTAACT 59.448 37.037 0.00 0.00 0.00 2.24
2005 2296 7.692088 TGATAGAGTACGAACAGCTAACTAAC 58.308 38.462 0.00 0.00 0.00 2.34
2009 2371 6.961576 AGATGATAGAGTACGAACAGCTAAC 58.038 40.000 0.00 0.00 0.00 2.34
2013 2375 5.583495 ACAAGATGATAGAGTACGAACAGC 58.417 41.667 0.00 0.00 0.00 4.40
2021 2383 9.967346 GCACATAAGTTACAAGATGATAGAGTA 57.033 33.333 0.00 0.00 0.00 2.59
2022 2384 8.700051 AGCACATAAGTTACAAGATGATAGAGT 58.300 33.333 0.00 0.00 0.00 3.24
2023 2385 8.976471 CAGCACATAAGTTACAAGATGATAGAG 58.024 37.037 0.00 0.00 0.00 2.43
2027 2389 6.418101 ACCAGCACATAAGTTACAAGATGAT 58.582 36.000 0.00 0.00 0.00 2.45
2030 2392 6.003950 ACAACCAGCACATAAGTTACAAGAT 58.996 36.000 0.00 0.00 0.00 2.40
2031 2393 5.238432 CACAACCAGCACATAAGTTACAAGA 59.762 40.000 0.00 0.00 0.00 3.02
2036 2398 4.456535 ACACACAACCAGCACATAAGTTA 58.543 39.130 0.00 0.00 0.00 2.24
2039 2401 3.565482 AGAACACACAACCAGCACATAAG 59.435 43.478 0.00 0.00 0.00 1.73
2040 2402 3.550820 AGAACACACAACCAGCACATAA 58.449 40.909 0.00 0.00 0.00 1.90
2043 2405 2.285083 GTAGAACACACAACCAGCACA 58.715 47.619 0.00 0.00 0.00 4.57
2045 2407 2.700722 TGTAGAACACACAACCAGCA 57.299 45.000 0.00 0.00 30.04 4.41
2058 2494 6.427853 CAGATCATGGTTCAGTTTGTGTAGAA 59.572 38.462 0.00 0.00 0.00 2.10
2059 2495 5.934043 CAGATCATGGTTCAGTTTGTGTAGA 59.066 40.000 0.00 0.00 0.00 2.59
2060 2496 5.122869 CCAGATCATGGTTCAGTTTGTGTAG 59.877 44.000 0.00 0.00 44.91 2.74
2062 2498 3.822735 CCAGATCATGGTTCAGTTTGTGT 59.177 43.478 0.00 0.00 44.91 3.72
2063 2499 4.430137 CCAGATCATGGTTCAGTTTGTG 57.570 45.455 0.00 0.00 44.91 3.33
2087 2523 9.384764 GCCTGAAGAGATTTACAGTTACTATTT 57.615 33.333 0.00 0.00 0.00 1.40
2088 2524 8.540388 TGCCTGAAGAGATTTACAGTTACTATT 58.460 33.333 0.00 0.00 0.00 1.73
2090 2526 7.476540 TGCCTGAAGAGATTTACAGTTACTA 57.523 36.000 0.00 0.00 0.00 1.82
2092 2528 6.401153 CGTTGCCTGAAGAGATTTACAGTTAC 60.401 42.308 0.00 0.00 0.00 2.50
2094 2530 4.452455 CGTTGCCTGAAGAGATTTACAGTT 59.548 41.667 0.00 0.00 0.00 3.16
2095 2531 3.997021 CGTTGCCTGAAGAGATTTACAGT 59.003 43.478 0.00 0.00 0.00 3.55
2096 2532 3.372206 CCGTTGCCTGAAGAGATTTACAG 59.628 47.826 0.00 0.00 0.00 2.74
2097 2533 3.334691 CCGTTGCCTGAAGAGATTTACA 58.665 45.455 0.00 0.00 0.00 2.41
2106 2553 0.603707 TTCAGAGCCGTTGCCTGAAG 60.604 55.000 11.72 0.00 43.56 3.02
2108 2555 1.301716 GTTCAGAGCCGTTGCCTGA 60.302 57.895 0.00 0.00 40.63 3.86
2111 2558 1.166531 ACAAGTTCAGAGCCGTTGCC 61.167 55.000 0.00 0.00 38.69 4.52
2112 2559 0.040958 CACAAGTTCAGAGCCGTTGC 60.041 55.000 0.00 0.00 37.95 4.17
2116 2563 0.601046 TCTGCACAAGTTCAGAGCCG 60.601 55.000 0.00 0.00 34.69 5.52
2118 2565 2.420642 TCATCTGCACAAGTTCAGAGC 58.579 47.619 8.41 0.00 41.95 4.09
2120 2567 4.903054 AGAATCATCTGCACAAGTTCAGA 58.097 39.130 5.09 5.09 42.72 3.27
2130 2577 7.597369 CAGAAATGAAACAAAGAATCATCTGCA 59.403 33.333 0.00 0.00 35.59 4.41
2131 2578 7.811236 TCAGAAATGAAACAAAGAATCATCTGC 59.189 33.333 0.00 0.00 35.59 4.26
2132 2579 9.687210 TTCAGAAATGAAACAAAGAATCATCTG 57.313 29.630 0.00 0.00 35.59 2.90
2154 2601 7.661040 ACCCATAGTTGAAAAGTGAAATTCAG 58.339 34.615 0.00 0.00 36.93 3.02
2155 2602 7.595819 ACCCATAGTTGAAAAGTGAAATTCA 57.404 32.000 0.00 0.00 33.93 2.57
2174 2621 1.492176 CCACTAGCCTCATCAACCCAT 59.508 52.381 0.00 0.00 0.00 4.00
2176 2623 0.464554 GCCACTAGCCTCATCAACCC 60.465 60.000 0.00 0.00 34.35 4.11
2218 2665 4.344865 TTCCGCCTCAAGCCCCAC 62.345 66.667 0.00 0.00 38.78 4.61
2219 2666 4.033776 CTTCCGCCTCAAGCCCCA 62.034 66.667 0.00 0.00 38.78 4.96
2220 2667 4.035102 ACTTCCGCCTCAAGCCCC 62.035 66.667 0.00 0.00 38.78 5.80
2221 2668 2.747855 CACTTCCGCCTCAAGCCC 60.748 66.667 0.00 0.00 38.78 5.19
2222 2669 1.743252 CTCACTTCCGCCTCAAGCC 60.743 63.158 0.00 0.00 38.78 4.35
2223 2670 1.016653 GTCTCACTTCCGCCTCAAGC 61.017 60.000 0.00 0.00 38.52 4.01
2225 2672 1.289066 CGTCTCACTTCCGCCTCAA 59.711 57.895 0.00 0.00 0.00 3.02
2226 2673 2.636412 CCGTCTCACTTCCGCCTCA 61.636 63.158 0.00 0.00 0.00 3.86
2228 2675 4.070552 GCCGTCTCACTTCCGCCT 62.071 66.667 0.00 0.00 0.00 5.52
2230 2677 4.719369 ACGCCGTCTCACTTCCGC 62.719 66.667 0.00 0.00 0.00 5.54
2232 2679 2.022129 CACACGCCGTCTCACTTCC 61.022 63.158 0.00 0.00 0.00 3.46
2235 2682 2.335369 GTCACACGCCGTCTCACT 59.665 61.111 0.00 0.00 0.00 3.41
2237 2684 3.249973 CTCGTCACACGCCGTCTCA 62.250 63.158 0.00 0.00 42.21 3.27
2238 2685 2.453773 TTCTCGTCACACGCCGTCTC 62.454 60.000 0.00 0.00 42.21 3.36
2240 2687 1.443872 ATTCTCGTCACACGCCGTC 60.444 57.895 0.00 0.00 42.21 4.79
2241 2688 1.733041 CATTCTCGTCACACGCCGT 60.733 57.895 0.00 0.00 42.21 5.68
2242 2689 1.674611 GACATTCTCGTCACACGCCG 61.675 60.000 0.00 0.00 42.21 6.46
2243 2690 1.674611 CGACATTCTCGTCACACGCC 61.675 60.000 0.00 0.00 42.21 5.68
2245 2692 1.896345 ATCGACATTCTCGTCACACG 58.104 50.000 0.00 0.00 43.45 4.49
2246 2693 3.921021 AGAAATCGACATTCTCGTCACAC 59.079 43.478 9.00 0.00 43.45 3.82
2247 2694 4.174411 AGAAATCGACATTCTCGTCACA 57.826 40.909 9.00 0.00 43.45 3.58
2250 2697 5.003967 GTCTGAAGAAATCGACATTCTCGTC 59.996 44.000 13.87 10.21 43.45 4.20
2253 2700 6.900568 ATGTCTGAAGAAATCGACATTCTC 57.099 37.500 13.87 9.28 43.37 2.87
2255 2702 9.994432 AATTTATGTCTGAAGAAATCGACATTC 57.006 29.630 15.53 4.94 43.37 2.67
2259 2706 9.922305 CCTAAATTTATGTCTGAAGAAATCGAC 57.078 33.333 0.00 0.00 34.37 4.20
2260 2707 9.667107 ACCTAAATTTATGTCTGAAGAAATCGA 57.333 29.630 0.00 0.00 0.00 3.59
2265 2712 9.010029 GGTGAACCTAAATTTATGTCTGAAGAA 57.990 33.333 6.60 0.00 0.00 2.52
2266 2713 8.383175 AGGTGAACCTAAATTTATGTCTGAAGA 58.617 33.333 0.00 0.00 46.48 2.87
2279 2726 7.072581 CCTAATTAGGAGGAGGTGAACCTAAAT 59.927 40.741 24.99 0.00 46.06 1.40
2280 2727 6.386050 CCTAATTAGGAGGAGGTGAACCTAAA 59.614 42.308 24.99 0.00 46.06 1.85
2281 2728 5.903589 CCTAATTAGGAGGAGGTGAACCTAA 59.096 44.000 24.99 0.00 46.06 2.69
2282 2729 5.464984 CCTAATTAGGAGGAGGTGAACCTA 58.535 45.833 24.99 0.00 46.06 3.08
2284 2731 3.181453 GCCTAATTAGGAGGAGGTGAACC 60.181 52.174 31.78 8.40 46.63 3.62
2289 2736 2.695585 CCAGCCTAATTAGGAGGAGGT 58.304 52.381 31.78 9.75 46.63 3.85
2290 2737 1.981495 CCCAGCCTAATTAGGAGGAGG 59.019 57.143 31.78 23.76 46.63 4.30
2291 2738 2.695585 ACCCAGCCTAATTAGGAGGAG 58.304 52.381 31.78 23.95 46.63 3.69
2294 2741 3.933861 ACAACCCAGCCTAATTAGGAG 57.066 47.619 31.78 22.24 46.63 3.69
2299 2746 3.806949 TCTGAACAACCCAGCCTAATT 57.193 42.857 0.00 0.00 0.00 1.40
2300 2747 3.806949 TTCTGAACAACCCAGCCTAAT 57.193 42.857 0.00 0.00 0.00 1.73
2302 2749 2.375174 ACATTCTGAACAACCCAGCCTA 59.625 45.455 0.00 0.00 0.00 3.93
2303 2750 1.145738 ACATTCTGAACAACCCAGCCT 59.854 47.619 0.00 0.00 0.00 4.58
2304 2751 1.620822 ACATTCTGAACAACCCAGCC 58.379 50.000 0.00 0.00 0.00 4.85
2305 2752 3.412386 ACTACATTCTGAACAACCCAGC 58.588 45.455 0.00 0.00 0.00 4.85
2308 2755 6.879458 ACATCTAACTACATTCTGAACAACCC 59.121 38.462 0.00 0.00 0.00 4.11
2309 2756 7.907214 ACATCTAACTACATTCTGAACAACC 57.093 36.000 0.00 0.00 0.00 3.77
2314 2761 8.134202 TCCTGAACATCTAACTACATTCTGAA 57.866 34.615 0.00 0.00 0.00 3.02
2317 2764 6.989169 GCATCCTGAACATCTAACTACATTCT 59.011 38.462 0.00 0.00 0.00 2.40
2319 2766 6.653020 TGCATCCTGAACATCTAACTACATT 58.347 36.000 0.00 0.00 0.00 2.71
2321 2768 5.675684 TGCATCCTGAACATCTAACTACA 57.324 39.130 0.00 0.00 0.00 2.74
2326 2773 5.183713 CCACTTTTGCATCCTGAACATCTAA 59.816 40.000 0.00 0.00 0.00 2.10
2328 2775 3.508793 CCACTTTTGCATCCTGAACATCT 59.491 43.478 0.00 0.00 0.00 2.90
2329 2776 3.256631 ACCACTTTTGCATCCTGAACATC 59.743 43.478 0.00 0.00 0.00 3.06
2330 2777 3.233507 ACCACTTTTGCATCCTGAACAT 58.766 40.909 0.00 0.00 0.00 2.71
2332 2779 2.622942 TGACCACTTTTGCATCCTGAAC 59.377 45.455 0.00 0.00 0.00 3.18
2333 2780 2.942804 TGACCACTTTTGCATCCTGAA 58.057 42.857 0.00 0.00 0.00 3.02
2335 2782 2.288395 GGTTGACCACTTTTGCATCCTG 60.288 50.000 0.00 0.00 35.64 3.86
2337 2784 1.686052 TGGTTGACCACTTTTGCATCC 59.314 47.619 0.00 0.00 42.01 3.51
2348 2795 4.097551 TCAGTGATTCATTGGTTGACCA 57.902 40.909 9.04 0.00 45.94 4.02
2350 2797 7.119699 TGTTCTATCAGTGATTCATTGGTTGAC 59.880 37.037 11.68 5.04 32.84 3.18
2351 2798 7.167535 TGTTCTATCAGTGATTCATTGGTTGA 58.832 34.615 11.68 6.00 0.00 3.18
2352 2799 7.381766 TGTTCTATCAGTGATTCATTGGTTG 57.618 36.000 11.68 3.82 0.00 3.77
2353 2800 7.362401 GCTTGTTCTATCAGTGATTCATTGGTT 60.362 37.037 11.68 1.25 0.00 3.67
2355 2802 6.094464 TGCTTGTTCTATCAGTGATTCATTGG 59.906 38.462 11.68 0.00 0.00 3.16
2356 2803 7.080353 TGCTTGTTCTATCAGTGATTCATTG 57.920 36.000 11.68 2.91 0.00 2.82
2357 2804 7.555195 TGATGCTTGTTCTATCAGTGATTCATT 59.445 33.333 11.68 0.00 0.00 2.57
2358 2805 7.052248 TGATGCTTGTTCTATCAGTGATTCAT 58.948 34.615 11.68 2.96 0.00 2.57
2362 2809 6.589135 TGATGATGCTTGTTCTATCAGTGAT 58.411 36.000 11.12 11.12 34.64 3.06
2364 2811 6.482308 TGATGATGATGCTTGTTCTATCAGTG 59.518 38.462 0.00 0.00 34.64 3.66
2366 2813 7.674471 ATGATGATGATGCTTGTTCTATCAG 57.326 36.000 0.00 0.00 34.64 2.90
2368 2815 6.802348 GCAATGATGATGATGCTTGTTCTATC 59.198 38.462 0.00 0.00 35.93 2.08
2370 2817 5.277634 CGCAATGATGATGATGCTTGTTCTA 60.278 40.000 0.00 0.00 36.67 2.10
2371 2818 4.497507 CGCAATGATGATGATGCTTGTTCT 60.498 41.667 0.00 0.00 36.67 3.01
2372 2819 3.729217 CGCAATGATGATGATGCTTGTTC 59.271 43.478 0.00 0.00 36.67 3.18
2373 2820 3.129813 ACGCAATGATGATGATGCTTGTT 59.870 39.130 0.00 0.00 36.67 2.83
2374 2821 2.686405 ACGCAATGATGATGATGCTTGT 59.314 40.909 0.00 0.00 36.67 3.16
2375 2822 3.042887 CACGCAATGATGATGATGCTTG 58.957 45.455 0.00 0.00 36.67 4.01
2376 2823 2.946990 TCACGCAATGATGATGATGCTT 59.053 40.909 0.00 0.00 36.67 3.91
2377 2824 2.567985 TCACGCAATGATGATGATGCT 58.432 42.857 0.00 0.00 36.67 3.79
2379 2826 5.103290 TGATTCACGCAATGATGATGATG 57.897 39.130 0.00 0.00 37.11 3.07
2380 2827 5.472137 TGATGATTCACGCAATGATGATGAT 59.528 36.000 0.00 0.00 37.11 2.45
2382 2829 5.103290 TGATGATTCACGCAATGATGATG 57.897 39.130 0.00 0.00 37.11 3.07
2383 2830 5.959618 ATGATGATTCACGCAATGATGAT 57.040 34.783 0.00 0.00 37.11 2.45
2386 2833 7.878036 TGAAATATGATGATTCACGCAATGAT 58.122 30.769 0.00 0.00 37.11 2.45
2387 2834 7.261829 TGAAATATGATGATTCACGCAATGA 57.738 32.000 0.00 0.00 33.85 2.57
2388 2835 7.858879 TCTTGAAATATGATGATTCACGCAATG 59.141 33.333 0.00 0.00 33.85 2.82
2389 2836 7.933396 TCTTGAAATATGATGATTCACGCAAT 58.067 30.769 0.00 0.00 33.85 3.56
2392 2839 8.071967 TGATTCTTGAAATATGATGATTCACGC 58.928 33.333 0.00 0.00 33.85 5.34
2393 2840 9.378597 GTGATTCTTGAAATATGATGATTCACG 57.621 33.333 0.00 0.00 33.85 4.35
2396 2843 9.674824 GGTGTGATTCTTGAAATATGATGATTC 57.325 33.333 0.00 0.00 0.00 2.52
2397 2844 9.417561 AGGTGTGATTCTTGAAATATGATGATT 57.582 29.630 0.00 0.00 0.00 2.57
2398 2845 8.991783 AGGTGTGATTCTTGAAATATGATGAT 57.008 30.769 0.00 0.00 0.00 2.45
2399 2846 8.812513 AAGGTGTGATTCTTGAAATATGATGA 57.187 30.769 0.00 0.00 0.00 2.92
2400 2847 8.900781 AGAAGGTGTGATTCTTGAAATATGATG 58.099 33.333 0.00 0.00 33.16 3.07
2404 2851 8.324306 TGAGAGAAGGTGTGATTCTTGAAATAT 58.676 33.333 0.00 0.00 37.14 1.28
2405 2852 7.679783 TGAGAGAAGGTGTGATTCTTGAAATA 58.320 34.615 0.00 0.00 37.14 1.40
2406 2853 6.537355 TGAGAGAAGGTGTGATTCTTGAAAT 58.463 36.000 0.00 0.00 37.14 2.17
2407 2854 5.928976 TGAGAGAAGGTGTGATTCTTGAAA 58.071 37.500 0.00 0.00 37.14 2.69
2408 2855 5.551305 TGAGAGAAGGTGTGATTCTTGAA 57.449 39.130 0.00 0.00 37.14 2.69
2409 2856 5.305386 TCTTGAGAGAAGGTGTGATTCTTGA 59.695 40.000 0.00 0.00 37.14 3.02
2410 2857 5.545588 TCTTGAGAGAAGGTGTGATTCTTG 58.454 41.667 0.00 0.00 37.14 3.02
2412 2859 5.815233 TTCTTGAGAGAAGGTGTGATTCT 57.185 39.130 0.00 0.00 39.69 2.40
2415 2862 6.119240 TGATTTCTTGAGAGAAGGTGTGAT 57.881 37.500 0.00 0.00 42.55 3.06
2416 2863 5.512060 CCTGATTTCTTGAGAGAAGGTGTGA 60.512 44.000 0.00 0.00 42.55 3.58
2417 2864 4.694509 CCTGATTTCTTGAGAGAAGGTGTG 59.305 45.833 0.00 0.00 42.55 3.82
2418 2865 4.805609 GCCTGATTTCTTGAGAGAAGGTGT 60.806 45.833 0.00 0.00 42.55 4.16
2419 2866 3.688673 GCCTGATTTCTTGAGAGAAGGTG 59.311 47.826 0.00 0.00 42.55 4.00
2420 2867 3.328931 TGCCTGATTTCTTGAGAGAAGGT 59.671 43.478 0.00 0.00 42.55 3.50
2421 2868 3.940221 CTGCCTGATTTCTTGAGAGAAGG 59.060 47.826 0.00 0.00 42.55 3.46
2422 2869 3.940221 CCTGCCTGATTTCTTGAGAGAAG 59.060 47.826 0.00 0.00 42.55 2.85
2423 2870 3.307975 CCCTGCCTGATTTCTTGAGAGAA 60.308 47.826 0.00 0.00 40.07 2.87
2424 2871 2.238144 CCCTGCCTGATTTCTTGAGAGA 59.762 50.000 0.00 0.00 0.00 3.10
2427 2874 1.101331 GCCCTGCCTGATTTCTTGAG 58.899 55.000 0.00 0.00 0.00 3.02
2428 2875 0.405198 TGCCCTGCCTGATTTCTTGA 59.595 50.000 0.00 0.00 0.00 3.02
2429 2876 0.815734 CTGCCCTGCCTGATTTCTTG 59.184 55.000 0.00 0.00 0.00 3.02
2430 2877 0.324091 CCTGCCCTGCCTGATTTCTT 60.324 55.000 0.00 0.00 0.00 2.52
2431 2878 1.305623 CCTGCCCTGCCTGATTTCT 59.694 57.895 0.00 0.00 0.00 2.52
2432 2879 1.755783 CCCTGCCCTGCCTGATTTC 60.756 63.158 0.00 0.00 0.00 2.17
2433 2880 1.803453 TTCCCTGCCCTGCCTGATTT 61.803 55.000 0.00 0.00 0.00 2.17
2435 2882 2.614969 TTCCCTGCCCTGCCTGAT 60.615 61.111 0.00 0.00 0.00 2.90
2436 2883 3.650950 GTTCCCTGCCCTGCCTGA 61.651 66.667 0.00 0.00 0.00 3.86
2440 2887 4.643387 ACACGTTCCCTGCCCTGC 62.643 66.667 0.00 0.00 0.00 4.85
2441 2888 2.113139 AACACGTTCCCTGCCCTG 59.887 61.111 0.00 0.00 0.00 4.45
2442 2889 2.113139 CAACACGTTCCCTGCCCT 59.887 61.111 0.00 0.00 0.00 5.19
2443 2890 2.983592 CCAACACGTTCCCTGCCC 60.984 66.667 0.00 0.00 0.00 5.36
2445 2892 3.670377 GGCCAACACGTTCCCTGC 61.670 66.667 0.00 0.00 0.00 4.85
2446 2893 1.528309 AAGGCCAACACGTTCCCTG 60.528 57.895 5.01 0.00 0.00 4.45
2448 2895 1.515521 CTCAAGGCCAACACGTTCCC 61.516 60.000 5.01 0.00 0.00 3.97
2449 2896 1.515521 CCTCAAGGCCAACACGTTCC 61.516 60.000 5.01 0.00 0.00 3.62
2450 2897 0.818040 ACCTCAAGGCCAACACGTTC 60.818 55.000 5.01 0.00 39.32 3.95
2451 2898 0.470766 TACCTCAAGGCCAACACGTT 59.529 50.000 5.01 0.00 39.32 3.99
2452 2899 0.034896 CTACCTCAAGGCCAACACGT 59.965 55.000 5.01 0.00 39.32 4.49
2454 2901 0.400594 ACCTACCTCAAGGCCAACAC 59.599 55.000 5.01 0.00 40.62 3.32
2455 2902 0.400213 CACCTACCTCAAGGCCAACA 59.600 55.000 5.01 0.00 40.62 3.33
2456 2903 0.960861 GCACCTACCTCAAGGCCAAC 60.961 60.000 5.01 0.00 40.62 3.77
2457 2904 1.378762 GCACCTACCTCAAGGCCAA 59.621 57.895 5.01 0.00 40.62 4.52
2459 2906 0.837272 TATGCACCTACCTCAAGGCC 59.163 55.000 0.00 0.00 40.62 5.19
2460 2907 1.209504 TGTATGCACCTACCTCAAGGC 59.790 52.381 0.00 0.00 40.62 4.35
2462 2909 2.158900 CCCTGTATGCACCTACCTCAAG 60.159 54.545 0.00 0.00 0.00 3.02
2463 2910 1.837439 CCCTGTATGCACCTACCTCAA 59.163 52.381 0.00 0.00 0.00 3.02
2465 2912 1.689273 CTCCCTGTATGCACCTACCTC 59.311 57.143 0.00 0.00 0.00 3.85
2466 2913 1.008449 ACTCCCTGTATGCACCTACCT 59.992 52.381 0.00 0.00 0.00 3.08
2467 2914 1.139058 CACTCCCTGTATGCACCTACC 59.861 57.143 0.00 0.00 0.00 3.18
2468 2915 1.473434 GCACTCCCTGTATGCACCTAC 60.473 57.143 0.00 0.00 39.23 3.18
2469 2916 0.830648 GCACTCCCTGTATGCACCTA 59.169 55.000 0.00 0.00 39.23 3.08
2471 2918 0.462759 GAGCACTCCCTGTATGCACC 60.463 60.000 0.00 0.00 41.97 5.01
2472 2919 0.807667 CGAGCACTCCCTGTATGCAC 60.808 60.000 0.00 0.00 41.97 4.57
2473 2920 1.517361 CGAGCACTCCCTGTATGCA 59.483 57.895 0.00 0.00 41.97 3.96
2474 2921 1.227380 CCGAGCACTCCCTGTATGC 60.227 63.158 0.00 0.00 39.74 3.14
2475 2922 1.227380 GCCGAGCACTCCCTGTATG 60.227 63.158 0.00 0.00 0.00 2.39
2476 2923 1.050988 ATGCCGAGCACTCCCTGTAT 61.051 55.000 0.50 0.00 43.04 2.29
2477 2924 1.676678 GATGCCGAGCACTCCCTGTA 61.677 60.000 0.50 0.00 43.04 2.74
2478 2925 3.005539 ATGCCGAGCACTCCCTGT 61.006 61.111 0.50 0.00 43.04 4.00
2479 2926 2.202987 GATGCCGAGCACTCCCTG 60.203 66.667 0.50 0.00 43.04 4.45
2493 2940 0.238289 GGAATGTTATGCGGCGGATG 59.762 55.000 24.53 0.00 0.00 3.51
2494 2941 1.227999 CGGAATGTTATGCGGCGGAT 61.228 55.000 19.81 19.81 0.00 4.18
2495 2942 1.885388 CGGAATGTTATGCGGCGGA 60.885 57.895 9.78 6.17 0.00 5.54
2496 2943 2.631428 CGGAATGTTATGCGGCGG 59.369 61.111 9.78 0.00 0.00 6.13
2500 2947 0.029300 CTTGGCCGGAATGTTATGCG 59.971 55.000 5.05 0.00 0.00 4.73
2502 2949 1.102154 TGCTTGGCCGGAATGTTATG 58.898 50.000 5.05 0.00 0.00 1.90
2503 2950 1.846007 TTGCTTGGCCGGAATGTTAT 58.154 45.000 5.05 0.00 0.00 1.89
2504 2951 1.748493 GATTGCTTGGCCGGAATGTTA 59.252 47.619 5.05 0.00 0.00 2.41
2505 2952 0.532115 GATTGCTTGGCCGGAATGTT 59.468 50.000 5.05 0.00 0.00 2.71
2506 2953 1.322538 GGATTGCTTGGCCGGAATGT 61.323 55.000 5.05 0.00 0.00 2.71
2507 2954 1.438814 GGATTGCTTGGCCGGAATG 59.561 57.895 5.05 0.00 0.00 2.67
2508 2955 2.120909 CGGATTGCTTGGCCGGAAT 61.121 57.895 5.05 0.00 41.29 3.01
2509 2956 2.749839 CGGATTGCTTGGCCGGAA 60.750 61.111 5.05 0.00 41.29 4.30
2513 2960 1.372087 CTCTGACGGATTGCTTGGCC 61.372 60.000 0.00 0.00 0.00 5.36
2514 2961 1.986575 GCTCTGACGGATTGCTTGGC 61.987 60.000 0.00 0.00 0.00 4.52
2515 2962 0.674581 TGCTCTGACGGATTGCTTGG 60.675 55.000 0.00 0.00 0.00 3.61
2516 2963 1.129998 CTTGCTCTGACGGATTGCTTG 59.870 52.381 0.00 0.00 0.00 4.01
2517 2964 1.271054 ACTTGCTCTGACGGATTGCTT 60.271 47.619 0.00 0.00 0.00 3.91
2518 2965 0.322975 ACTTGCTCTGACGGATTGCT 59.677 50.000 0.00 0.00 0.00 3.91
2519 2966 0.723981 GACTTGCTCTGACGGATTGC 59.276 55.000 0.00 0.00 0.00 3.56
2520 2967 2.266554 GAGACTTGCTCTGACGGATTG 58.733 52.381 0.00 0.00 40.61 2.67
2521 2968 1.205893 GGAGACTTGCTCTGACGGATT 59.794 52.381 0.00 0.00 43.43 3.01
2522 2969 0.820871 GGAGACTTGCTCTGACGGAT 59.179 55.000 0.00 0.00 43.43 4.18
2523 2970 0.251386 AGGAGACTTGCTCTGACGGA 60.251 55.000 0.00 0.00 43.43 4.69
2524 2971 0.172352 GAGGAGACTTGCTCTGACGG 59.828 60.000 0.00 0.00 44.43 4.79
2525 2972 3.712020 GAGGAGACTTGCTCTGACG 57.288 57.895 0.00 0.00 44.43 4.35
2530 2977 4.535526 AAAGAGAAGAGGAGACTTGCTC 57.464 45.455 0.00 0.00 44.43 4.26
2531 2978 4.592778 AGAAAAGAGAAGAGGAGACTTGCT 59.407 41.667 0.00 0.00 44.43 3.91
2532 2979 4.893608 AGAAAAGAGAAGAGGAGACTTGC 58.106 43.478 0.00 0.00 44.43 4.01
2533 2980 6.758254 AGAAGAAAAGAGAAGAGGAGACTTG 58.242 40.000 0.00 0.00 44.43 3.16
2534 2981 6.014584 GGAGAAGAAAAGAGAAGAGGAGACTT 60.015 42.308 0.00 0.00 44.43 3.01
2536 2983 5.245075 TGGAGAAGAAAAGAGAAGAGGAGAC 59.755 44.000 0.00 0.00 0.00 3.36
2537 2984 5.398236 TGGAGAAGAAAAGAGAAGAGGAGA 58.602 41.667 0.00 0.00 0.00 3.71
2538 2985 5.736951 TGGAGAAGAAAAGAGAAGAGGAG 57.263 43.478 0.00 0.00 0.00 3.69
2539 2986 6.726299 TGTATGGAGAAGAAAAGAGAAGAGGA 59.274 38.462 0.00 0.00 0.00 3.71
2540 2987 6.940739 TGTATGGAGAAGAAAAGAGAAGAGG 58.059 40.000 0.00 0.00 0.00 3.69
2541 2988 7.548780 CCTTGTATGGAGAAGAAAAGAGAAGAG 59.451 40.741 0.00 0.00 0.00 2.85
2542 2989 7.016661 ACCTTGTATGGAGAAGAAAAGAGAAGA 59.983 37.037 0.00 0.00 0.00 2.87
2543 2990 7.164803 ACCTTGTATGGAGAAGAAAAGAGAAG 58.835 38.462 0.00 0.00 0.00 2.85
2544 2991 7.079451 ACCTTGTATGGAGAAGAAAAGAGAA 57.921 36.000 0.00 0.00 0.00 2.87
2545 2992 6.295916 GGACCTTGTATGGAGAAGAAAAGAGA 60.296 42.308 0.00 0.00 0.00 3.10
2546 2993 5.877564 GGACCTTGTATGGAGAAGAAAAGAG 59.122 44.000 0.00 0.00 0.00 2.85
2547 2994 5.309543 TGGACCTTGTATGGAGAAGAAAAGA 59.690 40.000 0.00 0.00 0.00 2.52
2548 2995 5.560724 TGGACCTTGTATGGAGAAGAAAAG 58.439 41.667 0.00 0.00 0.00 2.27
2549 2996 5.576563 TGGACCTTGTATGGAGAAGAAAA 57.423 39.130 0.00 0.00 0.00 2.29
2550 2997 5.576563 TTGGACCTTGTATGGAGAAGAAA 57.423 39.130 0.00 0.00 0.00 2.52
2551 2998 5.576563 TTTGGACCTTGTATGGAGAAGAA 57.423 39.130 0.00 0.00 0.00 2.52
2552 2999 5.576563 TTTTGGACCTTGTATGGAGAAGA 57.423 39.130 0.00 0.00 0.00 2.87
2553 3000 5.358160 GGATTTTGGACCTTGTATGGAGAAG 59.642 44.000 0.00 0.00 0.00 2.85
2554 3001 5.015178 AGGATTTTGGACCTTGTATGGAGAA 59.985 40.000 0.00 0.00 31.95 2.87
2555 3002 4.540099 AGGATTTTGGACCTTGTATGGAGA 59.460 41.667 0.00 0.00 31.95 3.71
2556 3003 4.860022 AGGATTTTGGACCTTGTATGGAG 58.140 43.478 0.00 0.00 31.95 3.86
2557 3004 4.625324 CGAGGATTTTGGACCTTGTATGGA 60.625 45.833 0.00 0.00 36.57 3.41
2558 3005 3.627577 CGAGGATTTTGGACCTTGTATGG 59.372 47.826 0.00 0.00 36.57 2.74
2559 3006 3.627577 CCGAGGATTTTGGACCTTGTATG 59.372 47.826 0.00 0.00 36.30 2.39
2560 3007 3.265995 ACCGAGGATTTTGGACCTTGTAT 59.734 43.478 0.00 0.00 36.30 2.29
2561 3008 2.640826 ACCGAGGATTTTGGACCTTGTA 59.359 45.455 0.00 0.00 36.30 2.41
2562 3009 1.423921 ACCGAGGATTTTGGACCTTGT 59.576 47.619 0.00 0.00 36.30 3.16
2563 3010 2.084546 GACCGAGGATTTTGGACCTTG 58.915 52.381 0.00 0.00 36.57 3.61
2564 3011 1.004394 GGACCGAGGATTTTGGACCTT 59.996 52.381 0.00 0.00 40.78 3.50
2565 3012 0.618981 GGACCGAGGATTTTGGACCT 59.381 55.000 0.00 0.00 40.78 3.85
2566 3013 0.326927 TGGACCGAGGATTTTGGACC 59.673 55.000 0.00 0.00 43.34 4.46
2567 3014 1.739067 CTGGACCGAGGATTTTGGAC 58.261 55.000 0.00 0.00 34.08 4.02
2568 3015 0.035439 GCTGGACCGAGGATTTTGGA 60.035 55.000 0.00 0.00 34.08 3.53
2569 3016 0.322456 TGCTGGACCGAGGATTTTGG 60.322 55.000 0.00 0.00 36.29 3.28
2570 3017 1.089920 CTGCTGGACCGAGGATTTTG 58.910 55.000 0.00 0.00 0.00 2.44
2571 3018 0.693049 ACTGCTGGACCGAGGATTTT 59.307 50.000 0.00 0.00 0.00 1.82
2572 3019 1.568504 TACTGCTGGACCGAGGATTT 58.431 50.000 0.00 0.00 0.00 2.17
2573 3020 1.482593 CTTACTGCTGGACCGAGGATT 59.517 52.381 0.00 0.00 0.00 3.01
2574 3021 1.115467 CTTACTGCTGGACCGAGGAT 58.885 55.000 0.00 0.00 0.00 3.24
2575 3022 0.251653 ACTTACTGCTGGACCGAGGA 60.252 55.000 0.00 0.00 0.00 3.71
2576 3023 0.108615 CACTTACTGCTGGACCGAGG 60.109 60.000 0.00 0.00 0.00 4.63
2577 3024 0.888619 TCACTTACTGCTGGACCGAG 59.111 55.000 0.00 0.00 0.00 4.63
2578 3025 1.204704 CATCACTTACTGCTGGACCGA 59.795 52.381 0.00 0.00 0.00 4.69
2579 3026 1.066858 ACATCACTTACTGCTGGACCG 60.067 52.381 0.00 0.00 0.00 4.79
2580 3027 2.289694 ACACATCACTTACTGCTGGACC 60.290 50.000 0.00 0.00 0.00 4.46
2581 3028 2.738846 CACACATCACTTACTGCTGGAC 59.261 50.000 0.00 0.00 0.00 4.02
2582 3029 2.871637 GCACACATCACTTACTGCTGGA 60.872 50.000 0.00 0.00 0.00 3.86
2583 3030 1.466167 GCACACATCACTTACTGCTGG 59.534 52.381 0.00 0.00 0.00 4.85
2584 3031 2.420642 AGCACACATCACTTACTGCTG 58.579 47.619 0.00 0.00 33.74 4.41
2585 3032 2.810274 CAAGCACACATCACTTACTGCT 59.190 45.455 0.00 0.00 36.54 4.24
2586 3033 2.666619 GCAAGCACACATCACTTACTGC 60.667 50.000 0.00 0.00 0.00 4.40
2587 3034 2.549329 TGCAAGCACACATCACTTACTG 59.451 45.455 0.00 0.00 0.00 2.74
2588 3035 2.549754 GTGCAAGCACACATCACTTACT 59.450 45.455 19.47 0.00 45.53 2.24
2589 3036 2.921126 GTGCAAGCACACATCACTTAC 58.079 47.619 19.47 0.00 45.53 2.34
2622 3069 1.140052 TGCTCACTCCTGGACGAAAAA 59.860 47.619 0.00 0.00 0.00 1.94
2623 3070 0.756294 TGCTCACTCCTGGACGAAAA 59.244 50.000 0.00 0.00 0.00 2.29
2624 3071 0.976641 ATGCTCACTCCTGGACGAAA 59.023 50.000 0.00 0.00 0.00 3.46
2625 3072 1.476891 GTATGCTCACTCCTGGACGAA 59.523 52.381 0.00 0.00 0.00 3.85
2626 3073 1.103803 GTATGCTCACTCCTGGACGA 58.896 55.000 0.00 0.00 0.00 4.20
2627 3074 0.103208 GGTATGCTCACTCCTGGACG 59.897 60.000 0.00 0.00 0.00 4.79
2628 3075 1.490574 AGGTATGCTCACTCCTGGAC 58.509 55.000 0.00 0.00 0.00 4.02
2629 3076 3.398318 TTAGGTATGCTCACTCCTGGA 57.602 47.619 0.00 0.00 0.00 3.86
2630 3077 6.127310 GGTATATTAGGTATGCTCACTCCTGG 60.127 46.154 0.00 0.00 0.00 4.45
2631 3078 6.665680 AGGTATATTAGGTATGCTCACTCCTG 59.334 42.308 0.00 0.00 0.00 3.86
2632 3079 6.806217 AGGTATATTAGGTATGCTCACTCCT 58.194 40.000 0.00 0.00 0.00 3.69
2633 3080 6.663953 TGAGGTATATTAGGTATGCTCACTCC 59.336 42.308 0.00 0.00 0.00 3.85
2634 3081 7.704578 TGAGGTATATTAGGTATGCTCACTC 57.295 40.000 0.00 0.00 0.00 3.51
2635 3082 8.119246 AGATGAGGTATATTAGGTATGCTCACT 58.881 37.037 0.00 0.00 0.00 3.41
2636 3083 8.299990 AGATGAGGTATATTAGGTATGCTCAC 57.700 38.462 0.00 0.00 0.00 3.51
2637 3084 8.116026 TGAGATGAGGTATATTAGGTATGCTCA 58.884 37.037 0.00 0.00 0.00 4.26
2638 3085 8.410141 GTGAGATGAGGTATATTAGGTATGCTC 58.590 40.741 0.00 0.00 0.00 4.26
2639 3086 7.895962 TGTGAGATGAGGTATATTAGGTATGCT 59.104 37.037 0.00 0.00 0.00 3.79
2640 3087 8.067751 TGTGAGATGAGGTATATTAGGTATGC 57.932 38.462 0.00 0.00 0.00 3.14
2644 3091 9.249053 CACTATGTGAGATGAGGTATATTAGGT 57.751 37.037 0.00 0.00 35.23 3.08
2645 3092 8.194104 GCACTATGTGAGATGAGGTATATTAGG 58.806 40.741 1.52 0.00 35.23 2.69
2646 3093 8.743714 TGCACTATGTGAGATGAGGTATATTAG 58.256 37.037 1.52 0.00 35.23 1.73
2647 3094 8.650143 TGCACTATGTGAGATGAGGTATATTA 57.350 34.615 1.52 0.00 35.23 0.98
2648 3095 7.544804 TGCACTATGTGAGATGAGGTATATT 57.455 36.000 1.52 0.00 35.23 1.28
2649 3096 7.234371 ACTTGCACTATGTGAGATGAGGTATAT 59.766 37.037 1.52 0.00 35.23 0.86
2650 3097 6.551227 ACTTGCACTATGTGAGATGAGGTATA 59.449 38.462 1.52 0.00 35.23 1.47
2651 3098 5.365025 ACTTGCACTATGTGAGATGAGGTAT 59.635 40.000 1.52 0.00 35.23 2.73
2652 3099 4.711846 ACTTGCACTATGTGAGATGAGGTA 59.288 41.667 1.52 0.00 35.23 3.08
2653 3100 3.517100 ACTTGCACTATGTGAGATGAGGT 59.483 43.478 1.52 0.00 35.23 3.85
2654 3101 4.118410 GACTTGCACTATGTGAGATGAGG 58.882 47.826 1.52 0.00 35.23 3.86
2655 3102 5.008619 AGACTTGCACTATGTGAGATGAG 57.991 43.478 1.52 0.00 35.23 2.90
2656 3103 4.708909 AGAGACTTGCACTATGTGAGATGA 59.291 41.667 1.52 0.00 35.23 2.92
2657 3104 5.008619 AGAGACTTGCACTATGTGAGATG 57.991 43.478 1.52 0.00 35.23 2.90
2658 3105 4.099266 GGAGAGACTTGCACTATGTGAGAT 59.901 45.833 1.52 0.00 35.23 2.75
2659 3106 3.445450 GGAGAGACTTGCACTATGTGAGA 59.555 47.826 1.52 0.00 35.23 3.27
2660 3107 3.733380 CGGAGAGACTTGCACTATGTGAG 60.733 52.174 1.52 0.00 35.23 3.51
2661 3108 2.164422 CGGAGAGACTTGCACTATGTGA 59.836 50.000 1.52 0.00 35.23 3.58
2662 3109 2.094494 ACGGAGAGACTTGCACTATGTG 60.094 50.000 0.00 0.00 36.51 3.21
2663 3110 2.171840 ACGGAGAGACTTGCACTATGT 58.828 47.619 0.00 0.00 0.00 2.29
2664 3111 2.949451 ACGGAGAGACTTGCACTATG 57.051 50.000 0.00 0.00 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.