Multiple sequence alignment - TraesCS7B01G393500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G393500 chr7B 100.000 6204 0 0 1 6204 660334051 660340254 0.000000e+00 11457.0
1 TraesCS7B01G393500 chr7B 88.649 555 54 6 1 553 167581126 167580579 0.000000e+00 667.0
2 TraesCS7B01G393500 chr7B 87.659 551 62 4 1 550 41241898 41242443 2.440000e-178 636.0
3 TraesCS7B01G393500 chr7B 96.703 91 3 0 4878 4968 26879173 26879263 1.080000e-32 152.0
4 TraesCS7B01G393500 chr7B 91.071 112 6 4 4874 4982 589394651 589394541 1.390000e-31 148.0
5 TraesCS7B01G393500 chr7B 95.000 60 2 1 2749 2807 457244591 457244650 6.620000e-15 93.5
6 TraesCS7B01G393500 chr7B 93.333 60 4 0 5423 5482 660339433 660339492 8.570000e-14 89.8
7 TraesCS7B01G393500 chr7B 93.333 60 4 0 5383 5442 660339473 660339532 8.570000e-14 89.8
8 TraesCS7B01G393500 chr7A 97.443 2073 49 3 2810 4879 679894741 679896812 0.000000e+00 3531.0
9 TraesCS7B01G393500 chr7A 89.128 2226 114 58 592 2745 679892574 679894743 0.000000e+00 2652.0
10 TraesCS7B01G393500 chr7A 88.272 1296 67 26 4962 6204 679896811 679898074 0.000000e+00 1472.0
11 TraesCS7B01G393500 chr7A 97.778 90 2 0 4874 4963 556574370 556574281 8.330000e-34 156.0
12 TraesCS7B01G393500 chr7A 95.000 60 3 0 5423 5482 679897232 679897291 1.840000e-15 95.3
13 TraesCS7B01G393500 chr7A 94.444 36 2 0 5375 5410 679897264 679897299 8.690000e-04 56.5
14 TraesCS7B01G393500 chr7D 97.202 2073 54 3 2810 4879 588035455 588037526 0.000000e+00 3504.0
15 TraesCS7B01G393500 chr7D 94.449 1171 51 4 1577 2745 588034299 588035457 0.000000e+00 1790.0
16 TraesCS7B01G393500 chr7D 91.921 755 33 18 4962 5707 588037525 588038260 0.000000e+00 1031.0
17 TraesCS7B01G393500 chr7D 90.086 696 36 15 609 1283 588033075 588033758 0.000000e+00 872.0
18 TraesCS7B01G393500 chr7D 88.933 253 16 7 5953 6204 588038256 588038497 1.010000e-77 302.0
19 TraesCS7B01G393500 chr7D 87.273 220 19 4 1286 1501 588033787 588034001 6.210000e-60 243.0
20 TraesCS7B01G393500 chr7D 96.667 60 2 0 5423 5482 588037948 588038007 3.960000e-17 100.0
21 TraesCS7B01G393500 chr7D 94.444 36 2 0 5375 5410 588037980 588038015 8.690000e-04 56.5
22 TraesCS7B01G393500 chr6B 91.681 565 38 6 1 562 641253163 641252605 0.000000e+00 774.0
23 TraesCS7B01G393500 chr6B 100.000 48 0 0 2496 2543 613115052 613115005 8.570000e-14 89.8
24 TraesCS7B01G393500 chr5B 90.597 553 46 4 3 554 572968265 572967718 0.000000e+00 728.0
25 TraesCS7B01G393500 chr1B 89.228 557 52 4 2 557 612923710 612923161 0.000000e+00 689.0
26 TraesCS7B01G393500 chr1B 91.818 110 5 4 4854 4963 612728442 612728337 3.870000e-32 150.0
27 TraesCS7B01G393500 chr4B 88.689 557 55 6 1 554 579644307 579644858 0.000000e+00 673.0
28 TraesCS7B01G393500 chr4B 88.351 558 55 6 1 554 673173080 673172529 0.000000e+00 662.0
29 TraesCS7B01G393500 chr3B 88.214 560 56 7 1 556 728998866 728999419 0.000000e+00 660.0
30 TraesCS7B01G393500 chr3B 88.108 555 56 6 1 554 564315796 564315251 0.000000e+00 651.0
31 TraesCS7B01G393500 chr3B 93.333 105 5 2 4861 4964 415934894 415934791 2.990000e-33 154.0
32 TraesCS7B01G393500 chr3B 94.000 100 4 2 4871 4968 723790471 723790372 3.870000e-32 150.0
33 TraesCS7B01G393500 chr3B 82.979 94 10 6 2696 2787 816013787 816013876 5.160000e-11 80.5
34 TraesCS7B01G393500 chr4D 95.789 95 4 0 4877 4971 164649542 164649448 2.990000e-33 154.0
35 TraesCS7B01G393500 chr2B 95.789 95 4 0 4875 4969 250267317 250267223 2.990000e-33 154.0
36 TraesCS7B01G393500 chr2B 100.000 49 0 0 2495 2543 754008534 754008486 2.380000e-14 91.6
37 TraesCS7B01G393500 chr2B 95.833 48 2 0 2496 2543 139078909 139078956 1.850000e-10 78.7
38 TraesCS7B01G393500 chr2B 100.000 33 0 0 2541 2573 686835252 686835220 1.870000e-05 62.1
39 TraesCS7B01G393500 chr1A 91.667 108 6 3 4857 4963 460559913 460560018 5.010000e-31 147.0
40 TraesCS7B01G393500 chr1D 92.754 69 4 1 2740 2807 492364856 492364788 1.420000e-16 99.0
41 TraesCS7B01G393500 chr1D 90.278 72 4 3 2741 2809 417572146 417572217 2.380000e-14 91.6
42 TraesCS7B01G393500 chr1D 97.959 49 1 0 2495 2543 319515749 319515797 1.110000e-12 86.1
43 TraesCS7B01G393500 chr1D 97.917 48 1 0 2496 2543 320589948 320589995 3.990000e-12 84.2
44 TraesCS7B01G393500 chr3A 88.889 72 7 1 2743 2813 478807291 478807220 3.080000e-13 87.9
45 TraesCS7B01G393500 chr3A 87.838 74 7 1 2734 2807 574457662 574457733 1.110000e-12 86.1
46 TraesCS7B01G393500 chr3A 85.000 80 8 2 2741 2817 275292308 275292386 1.850000e-10 78.7
47 TraesCS7B01G393500 chr6A 89.041 73 3 3 2736 2807 153375136 153375204 1.110000e-12 86.1
48 TraesCS7B01G393500 chr6A 97.917 48 1 0 2496 2543 554462610 554462563 3.990000e-12 84.2
49 TraesCS7B01G393500 chrUn 89.552 67 6 1 2741 2807 134257776 134257841 3.990000e-12 84.2
50 TraesCS7B01G393500 chr4A 91.228 57 5 0 2487 2543 567678248 567678304 1.850000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G393500 chr7B 660334051 660340254 6203 False 3878.866667 11457 95.555333 1 6204 3 chr7B.!!$F4 6203
1 TraesCS7B01G393500 chr7B 167580579 167581126 547 True 667.000000 667 88.649000 1 553 1 chr7B.!!$R1 552
2 TraesCS7B01G393500 chr7B 41241898 41242443 545 False 636.000000 636 87.659000 1 550 1 chr7B.!!$F2 549
3 TraesCS7B01G393500 chr7A 679892574 679898074 5500 False 1561.360000 3531 92.857400 592 6204 5 chr7A.!!$F1 5612
4 TraesCS7B01G393500 chr7D 588033075 588038497 5422 False 987.312500 3504 92.621875 609 6204 8 chr7D.!!$F1 5595
5 TraesCS7B01G393500 chr6B 641252605 641253163 558 True 774.000000 774 91.681000 1 562 1 chr6B.!!$R2 561
6 TraesCS7B01G393500 chr5B 572967718 572968265 547 True 728.000000 728 90.597000 3 554 1 chr5B.!!$R1 551
7 TraesCS7B01G393500 chr1B 612923161 612923710 549 True 689.000000 689 89.228000 2 557 1 chr1B.!!$R2 555
8 TraesCS7B01G393500 chr4B 579644307 579644858 551 False 673.000000 673 88.689000 1 554 1 chr4B.!!$F1 553
9 TraesCS7B01G393500 chr4B 673172529 673173080 551 True 662.000000 662 88.351000 1 554 1 chr4B.!!$R1 553
10 TraesCS7B01G393500 chr3B 728998866 728999419 553 False 660.000000 660 88.214000 1 556 1 chr3B.!!$F1 555
11 TraesCS7B01G393500 chr3B 564315251 564315796 545 True 651.000000 651 88.108000 1 554 1 chr3B.!!$R2 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 676 0.102844 AGTGCATTTGCCACACACAC 59.897 50.0 0.00 0.0 41.18 3.82 F
718 735 0.310854 CTGGAAAAGGTCGTTGCACC 59.689 55.0 0.00 0.0 36.58 5.01 F
1313 1386 0.667184 GCATTGGCCCGTGTCTTTTG 60.667 55.0 0.00 0.0 0.00 2.44 F
2313 2626 0.798776 GTCAGTCCATGCTTGAACGG 59.201 55.0 0.22 0.0 0.00 4.44 F
4148 4469 0.535335 ACCATGCCTACAGTACACCG 59.465 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1550 1634 0.323178 AATTGCAGGCCAGGAGTCAG 60.323 55.000 5.01 0.00 0.00 3.51 R
1956 2263 0.392461 GGGCTTGCGGTGAGACATTA 60.392 55.000 0.00 0.00 0.00 1.90 R
2418 2731 1.745653 GCAGCCTTAGTTGGATTCCAC 59.254 52.381 4.45 1.09 30.78 4.02 R
4306 4627 0.654160 TCAGTACGACGCCGATACAG 59.346 55.000 0.00 0.00 39.50 2.74 R
5982 6361 0.249573 CCACCAGCAGCAGGTTTTTG 60.250 55.000 6.77 0.00 37.23 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 252 4.648626 ACCCCGAGGACGACGACA 62.649 66.667 0.00 0.00 42.66 4.35
355 366 0.239082 CCTTCGTGGCCGGTTTTAAC 59.761 55.000 1.90 0.00 33.95 2.01
396 407 9.991388 GTTTTCATGTTAAATATGCATGCATTT 57.009 25.926 36.23 27.20 39.64 2.32
399 410 8.582433 TCATGTTAAATATGCATGCATTTCAG 57.418 30.769 36.23 16.83 39.64 3.02
400 411 8.198778 TCATGTTAAATATGCATGCATTTCAGT 58.801 29.630 36.23 16.82 39.64 3.41
430 442 2.807895 CGTCGAAATGGGTCGCGT 60.808 61.111 5.77 0.00 40.88 6.01
438 450 0.319083 AATGGGTCGCGTCAGTGTTA 59.681 50.000 5.77 0.00 0.00 2.41
533 548 1.248101 AAATCGCCTTCCGTTTGGGG 61.248 55.000 0.00 0.00 38.35 4.96
561 576 2.169832 TGGAGTTGCTCTAACAGTGC 57.830 50.000 0.00 0.00 41.88 4.40
562 577 1.270839 TGGAGTTGCTCTAACAGTGCC 60.271 52.381 0.00 0.00 41.88 5.01
564 579 0.764890 AGTTGCTCTAACAGTGCCCA 59.235 50.000 0.00 0.00 41.88 5.36
565 580 1.352352 AGTTGCTCTAACAGTGCCCAT 59.648 47.619 0.00 0.00 41.88 4.00
566 581 1.470098 GTTGCTCTAACAGTGCCCATG 59.530 52.381 0.00 0.00 39.16 3.66
567 582 0.983467 TGCTCTAACAGTGCCCATGA 59.017 50.000 0.00 0.00 34.08 3.07
568 583 1.339055 TGCTCTAACAGTGCCCATGAC 60.339 52.381 0.00 0.00 34.08 3.06
569 584 1.645034 CTCTAACAGTGCCCATGACG 58.355 55.000 0.00 0.00 0.00 4.35
570 585 1.204704 CTCTAACAGTGCCCATGACGA 59.795 52.381 0.00 0.00 0.00 4.20
571 586 1.831106 TCTAACAGTGCCCATGACGAT 59.169 47.619 0.00 0.00 0.00 3.73
572 587 2.236146 TCTAACAGTGCCCATGACGATT 59.764 45.455 0.00 0.00 0.00 3.34
573 588 1.453155 AACAGTGCCCATGACGATTC 58.547 50.000 0.00 0.00 0.00 2.52
574 589 0.615331 ACAGTGCCCATGACGATTCT 59.385 50.000 0.00 0.00 0.00 2.40
575 590 1.012086 CAGTGCCCATGACGATTCTG 58.988 55.000 0.00 0.00 0.00 3.02
576 591 0.615331 AGTGCCCATGACGATTCTGT 59.385 50.000 0.00 0.00 0.00 3.41
577 592 1.009829 GTGCCCATGACGATTCTGTC 58.990 55.000 0.00 2.88 39.37 3.51
578 593 0.904649 TGCCCATGACGATTCTGTCT 59.095 50.000 0.00 0.00 39.64 3.41
579 594 1.293924 GCCCATGACGATTCTGTCTG 58.706 55.000 0.00 6.03 39.64 3.51
580 595 1.406069 GCCCATGACGATTCTGTCTGT 60.406 52.381 0.00 0.00 39.64 3.41
581 596 2.936993 GCCCATGACGATTCTGTCTGTT 60.937 50.000 0.00 0.00 39.64 3.16
582 597 3.678806 GCCCATGACGATTCTGTCTGTTA 60.679 47.826 0.00 0.00 39.64 2.41
583 598 3.865745 CCCATGACGATTCTGTCTGTTAC 59.134 47.826 0.00 0.00 39.64 2.50
584 599 4.382040 CCCATGACGATTCTGTCTGTTACT 60.382 45.833 0.00 0.00 39.64 2.24
585 600 5.171476 CCATGACGATTCTGTCTGTTACTT 58.829 41.667 0.00 0.00 39.64 2.24
586 601 5.062683 CCATGACGATTCTGTCTGTTACTTG 59.937 44.000 0.00 0.00 39.64 3.16
587 602 5.196341 TGACGATTCTGTCTGTTACTTGT 57.804 39.130 0.00 0.00 39.64 3.16
588 603 4.982295 TGACGATTCTGTCTGTTACTTGTG 59.018 41.667 0.00 0.00 39.64 3.33
589 604 5.196341 ACGATTCTGTCTGTTACTTGTGA 57.804 39.130 0.00 0.00 0.00 3.58
590 605 5.223382 ACGATTCTGTCTGTTACTTGTGAG 58.777 41.667 0.00 0.00 0.00 3.51
599 614 5.237344 GTCTGTTACTTGTGAGCACTGATTT 59.763 40.000 1.99 0.00 0.00 2.17
601 616 6.989759 TCTGTTACTTGTGAGCACTGATTTTA 59.010 34.615 1.99 0.00 0.00 1.52
606 621 6.672147 ACTTGTGAGCACTGATTTTATTCAC 58.328 36.000 1.99 0.00 35.31 3.18
607 622 5.281693 TGTGAGCACTGATTTTATTCACG 57.718 39.130 1.99 0.00 37.00 4.35
616 631 5.914635 ACTGATTTTATTCACGTTGTGCAAG 59.085 36.000 0.00 0.00 32.98 4.01
640 655 8.273780 AGAATTGGTGATGTTCTTACAGATTC 57.726 34.615 0.00 0.00 37.77 2.52
659 674 1.879380 TCTAGTGCATTTGCCACACAC 59.121 47.619 0.00 0.00 41.18 3.82
661 676 0.102844 AGTGCATTTGCCACACACAC 59.897 50.000 0.00 0.00 41.18 3.82
662 677 1.065436 TGCATTTGCCACACACACG 59.935 52.632 0.00 0.00 41.18 4.49
679 696 2.687425 ACACGCAAAAGCATATGCCATA 59.313 40.909 23.96 0.00 43.38 2.74
680 697 3.243168 ACACGCAAAAGCATATGCCATAG 60.243 43.478 23.96 12.93 43.38 2.23
681 698 2.294233 ACGCAAAAGCATATGCCATAGG 59.706 45.455 23.96 11.65 43.38 2.57
682 699 2.352030 CGCAAAAGCATATGCCATAGGG 60.352 50.000 23.96 15.45 43.38 3.53
683 700 2.892852 GCAAAAGCATATGCCATAGGGA 59.107 45.455 23.96 0.00 43.38 4.20
718 735 0.310854 CTGGAAAAGGTCGTTGCACC 59.689 55.000 0.00 0.00 36.58 5.01
865 895 2.986413 CGCCCTCCTCGATCCGAT 60.986 66.667 0.00 0.00 34.61 4.18
880 910 3.416880 GATTTCCCGGCCCCTCCA 61.417 66.667 0.00 0.00 34.01 3.86
1159 1201 3.703127 GCCCTCCCCGTTTCTCGT 61.703 66.667 0.00 0.00 37.94 4.18
1167 1209 2.496871 TCCCCGTTTCTCGTAATGCTTA 59.503 45.455 0.00 0.00 37.94 3.09
1212 1254 2.603173 GGTTTCTTGAAACGCTGAGCTG 60.603 50.000 16.79 0.00 33.62 4.24
1222 1264 3.819920 CTGAGCTGCGCGGAGAGA 61.820 66.667 32.75 12.45 0.00 3.10
1252 1295 4.776647 GTTTCATGGCGCCCGTGC 62.777 66.667 26.77 6.62 40.13 5.34
1283 1330 5.487433 TCAACCGAATCTTCTGCTTTGATA 58.513 37.500 0.00 0.00 0.00 2.15
1284 1331 5.937540 TCAACCGAATCTTCTGCTTTGATAA 59.062 36.000 0.00 0.00 0.00 1.75
1312 1385 1.665442 GCATTGGCCCGTGTCTTTT 59.335 52.632 0.00 0.00 0.00 2.27
1313 1386 0.667184 GCATTGGCCCGTGTCTTTTG 60.667 55.000 0.00 0.00 0.00 2.44
1350 1434 4.696877 TGCTATCCTGTCAGTGTTTGATTG 59.303 41.667 0.00 0.00 38.29 2.67
1360 1444 2.028748 AGTGTTTGATTGGGCTCAATGC 60.029 45.455 18.65 9.07 43.08 3.56
1364 1448 4.176271 GTTTGATTGGGCTCAATGCTAAC 58.824 43.478 18.65 16.03 43.08 2.34
1398 1482 4.020307 TCATGATGCTGGACTGTAGTGAAA 60.020 41.667 0.00 0.00 0.00 2.69
1423 1507 7.837863 ACTACGTGCATATATAGGCTTTATGT 58.162 34.615 19.22 12.91 33.54 2.29
1504 1588 9.757227 TGTTTCAAGGAATTCGTAAATCATTTT 57.243 25.926 0.22 0.00 0.00 1.82
1550 1634 2.231721 AGTCTGTTAGCTTCGAGGGTTC 59.768 50.000 4.04 0.00 0.00 3.62
1568 1652 1.203441 TCTGACTCCTGGCCTGCAAT 61.203 55.000 3.32 0.00 0.00 3.56
1571 1655 1.304713 ACTCCTGGCCTGCAATTGG 60.305 57.895 3.32 0.00 0.00 3.16
1653 1959 1.153349 GGATGAAGACGGTGCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
1712 2018 3.487372 GTGGGTAAGCTTTTCCTCAACT 58.513 45.455 3.20 0.00 0.00 3.16
1774 2080 5.692204 CCTGTAGATTTAGGCTGTTACATCG 59.308 44.000 0.00 0.00 0.00 3.84
1915 2222 4.746535 TCAGGATGATAAAGCGGTAACA 57.253 40.909 0.00 0.00 42.56 2.41
1993 2300 2.634940 GCCCTCAGCTGATAATAGACCA 59.365 50.000 18.63 0.00 38.99 4.02
2028 2335 4.438797 CAGAACATGCTGTTGTTTTTCTCG 59.561 41.667 6.31 0.00 41.28 4.04
2045 2352 5.560966 TTCTCGGCAGTTATTCATTTTCC 57.439 39.130 0.00 0.00 0.00 3.13
2118 2425 6.021153 GCGTTCTCTGCATTTTTCATGAATAC 60.021 38.462 9.40 0.00 0.00 1.89
2146 2453 1.736126 ACATTCAGTTGCATCAGCTCG 59.264 47.619 0.00 0.00 42.74 5.03
2313 2626 0.798776 GTCAGTCCATGCTTGAACGG 59.201 55.000 0.22 0.00 0.00 4.44
2373 2686 9.967451 TTTGGATATAAACAAGGTAAGTCATCA 57.033 29.630 0.00 0.00 0.00 3.07
2378 2691 3.769739 ACAAGGTAAGTCATCAGTGCA 57.230 42.857 0.00 0.00 0.00 4.57
2418 2731 5.240183 CACTTCTCATATGGCCTAACATTGG 59.760 44.000 3.32 0.00 32.39 3.16
2504 2817 5.309806 GGGCTCTTATTTATTACTCCCTCCA 59.690 44.000 0.00 0.00 0.00 3.86
2584 2904 7.556635 GGTATGGAGGGAGTAATATTTAATGCC 59.443 40.741 0.00 0.00 0.00 4.40
2602 2922 1.135286 GCCGAGCCATTCTTTTCAAGG 60.135 52.381 0.00 0.00 0.00 3.61
2630 2950 5.392767 TGCAACCACAAACTGTTTCTTAA 57.607 34.783 2.13 0.00 0.00 1.85
2631 2951 5.406649 TGCAACCACAAACTGTTTCTTAAG 58.593 37.500 2.13 0.00 0.00 1.85
2747 3068 8.122472 AGTAGCATTATTTTTGCCATATACCC 57.878 34.615 0.00 0.00 41.06 3.69
2748 3069 6.358974 AGCATTATTTTTGCCATATACCCC 57.641 37.500 0.00 0.00 41.06 4.95
2749 3070 5.248248 AGCATTATTTTTGCCATATACCCCC 59.752 40.000 0.00 0.00 41.06 5.40
2750 3071 5.248248 GCATTATTTTTGCCATATACCCCCT 59.752 40.000 0.00 0.00 33.95 4.79
2751 3072 6.574269 GCATTATTTTTGCCATATACCCCCTC 60.574 42.308 0.00 0.00 33.95 4.30
2752 3073 4.832560 ATTTTTGCCATATACCCCCTCT 57.167 40.909 0.00 0.00 0.00 3.69
2753 3074 3.593442 TTTTGCCATATACCCCCTCTG 57.407 47.619 0.00 0.00 0.00 3.35
2754 3075 2.206322 TTGCCATATACCCCCTCTGT 57.794 50.000 0.00 0.00 0.00 3.41
2755 3076 3.354233 TTGCCATATACCCCCTCTGTA 57.646 47.619 0.00 0.00 0.00 2.74
2756 3077 3.354233 TGCCATATACCCCCTCTGTAA 57.646 47.619 0.00 0.00 0.00 2.41
2757 3078 3.671079 TGCCATATACCCCCTCTGTAAA 58.329 45.455 0.00 0.00 0.00 2.01
2758 3079 3.393278 TGCCATATACCCCCTCTGTAAAC 59.607 47.826 0.00 0.00 0.00 2.01
2759 3080 3.651423 GCCATATACCCCCTCTGTAAACT 59.349 47.826 0.00 0.00 0.00 2.66
2760 3081 4.842380 GCCATATACCCCCTCTGTAAACTA 59.158 45.833 0.00 0.00 0.00 2.24
2761 3082 5.308759 GCCATATACCCCCTCTGTAAACTAA 59.691 44.000 0.00 0.00 0.00 2.24
2762 3083 6.012771 GCCATATACCCCCTCTGTAAACTAAT 60.013 42.308 0.00 0.00 0.00 1.73
2763 3084 7.181485 GCCATATACCCCCTCTGTAAACTAATA 59.819 40.741 0.00 0.00 0.00 0.98
2764 3085 9.280456 CCATATACCCCCTCTGTAAACTAATAT 57.720 37.037 0.00 0.00 0.00 1.28
2769 3090 8.493787 ACCCCCTCTGTAAACTAATATAAGAG 57.506 38.462 0.00 0.00 0.00 2.85
2770 3091 7.016366 ACCCCCTCTGTAAACTAATATAAGAGC 59.984 40.741 0.00 0.00 0.00 4.09
2771 3092 7.091443 CCCCTCTGTAAACTAATATAAGAGCG 58.909 42.308 0.00 0.00 0.00 5.03
2772 3093 7.255871 CCCCTCTGTAAACTAATATAAGAGCGT 60.256 40.741 0.00 0.00 0.00 5.07
2773 3094 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2774 3095 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2856 3177 3.659786 TCTTTCCCACATGTGTAACTCG 58.340 45.455 23.79 7.74 38.04 4.18
3136 3457 0.681733 GCTGAACAGGAGTGACAGGA 59.318 55.000 3.99 0.00 34.60 3.86
3336 3657 0.889994 TGATGAATGGTGCACAAGGC 59.110 50.000 20.43 4.06 45.13 4.35
3369 3690 7.274686 GCTATTACCGATTTCTATTCTCTCAGC 59.725 40.741 0.00 0.00 0.00 4.26
3984 4305 5.812286 AGGGGATTTTTAAGAAGAAGCGTA 58.188 37.500 0.00 0.00 0.00 4.42
4115 4436 8.607459 CACTGATATAGTTCCTGTCAAATTGAC 58.393 37.037 18.42 18.42 41.91 3.18
4139 4460 3.418047 ACAGTTTACCAACCATGCCTAC 58.582 45.455 0.00 0.00 32.70 3.18
4148 4469 0.535335 ACCATGCCTACAGTACACCG 59.465 55.000 0.00 0.00 0.00 4.94
4290 4611 4.224715 TGGAGCTCGTGAGTATTTATCG 57.775 45.455 7.83 0.00 0.00 2.92
4310 4631 2.868964 AGGAATAGGCCTCCACTGTA 57.131 50.000 9.68 0.00 35.20 2.74
4369 4690 1.073923 AGGAAGAACCATGCGTTTCCT 59.926 47.619 11.54 11.54 37.03 3.36
4454 4775 3.708631 CCCTGTCAGAGTGATGGTAAGAT 59.291 47.826 0.00 0.00 0.00 2.40
4534 4855 5.541953 AGAGCATAGCATATGTTCTGACA 57.458 39.130 13.31 0.00 38.02 3.58
4572 4893 2.290960 GGTGGCTGATAAGGAGTTGGTT 60.291 50.000 0.00 0.00 0.00 3.67
4651 4972 6.915544 TTGACTAAAGCTGCTGATCATAAG 57.084 37.500 1.35 0.00 0.00 1.73
4694 5015 6.435591 TCCACCTGAAATTATTGCAACACATA 59.564 34.615 0.00 0.00 0.00 2.29
4871 5194 4.078571 TCCCCTGTTGAGTCTCCTATACAT 60.079 45.833 0.00 0.00 0.00 2.29
4887 5210 8.991783 TCCTATACATAATAATACTCCCTCCG 57.008 38.462 0.00 0.00 0.00 4.63
4888 5211 8.563502 TCCTATACATAATAATACTCCCTCCGT 58.436 37.037 0.00 0.00 0.00 4.69
4889 5212 9.198475 CCTATACATAATAATACTCCCTCCGTT 57.802 37.037 0.00 0.00 0.00 4.44
4891 5214 6.356186 ACATAATAATACTCCCTCCGTTCC 57.644 41.667 0.00 0.00 0.00 3.62
4892 5215 5.842328 ACATAATAATACTCCCTCCGTTCCA 59.158 40.000 0.00 0.00 0.00 3.53
4893 5216 6.328148 ACATAATAATACTCCCTCCGTTCCAA 59.672 38.462 0.00 0.00 0.00 3.53
4894 5217 5.703730 AATAATACTCCCTCCGTTCCAAA 57.296 39.130 0.00 0.00 0.00 3.28
4895 5218 5.703730 ATAATACTCCCTCCGTTCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
4896 5219 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
4897 5220 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
4898 5221 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4899 5222 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4900 5223 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4901 5224 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4902 5225 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4903 5226 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4904 5227 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4905 5228 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4906 5229 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4907 5230 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4908 5231 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4909 5232 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4910 5233 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4911 5234 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4912 5235 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4913 5236 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
4914 5237 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
4915 5238 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
4916 5239 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
4917 5240 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4918 5241 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4919 5242 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
4920 5243 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
4921 5244 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
4923 5246 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
4924 5247 8.983702 ATGACCCAACTTTGTACTAAAGTTAA 57.016 30.769 23.56 13.94 45.57 2.01
4925 5248 8.983702 TGACCCAACTTTGTACTAAAGTTAAT 57.016 30.769 23.56 16.51 45.57 1.40
4928 5251 9.850198 ACCCAACTTTGTACTAAAGTTAATACA 57.150 29.630 23.56 0.00 45.57 2.29
4949 5272 9.846248 AATACAAAGTTGAGTCATCTATTTTGC 57.154 29.630 4.14 0.00 39.63 3.68
4950 5273 7.275888 ACAAAGTTGAGTCATCTATTTTGCA 57.724 32.000 4.14 0.00 39.63 4.08
4951 5274 7.715657 ACAAAGTTGAGTCATCTATTTTGCAA 58.284 30.769 4.14 0.00 39.63 4.08
4952 5275 7.649306 ACAAAGTTGAGTCATCTATTTTGCAAC 59.351 33.333 0.00 0.00 39.63 4.17
4953 5276 5.931532 AGTTGAGTCATCTATTTTGCAACG 58.068 37.500 0.00 0.00 39.30 4.10
4954 5277 4.944962 TGAGTCATCTATTTTGCAACGG 57.055 40.909 0.00 0.00 0.00 4.44
4955 5278 4.574892 TGAGTCATCTATTTTGCAACGGA 58.425 39.130 0.00 0.00 0.00 4.69
4956 5279 4.631377 TGAGTCATCTATTTTGCAACGGAG 59.369 41.667 0.00 0.00 0.00 4.63
4957 5280 3.941483 AGTCATCTATTTTGCAACGGAGG 59.059 43.478 0.00 0.00 0.00 4.30
4958 5281 3.065371 GTCATCTATTTTGCAACGGAGGG 59.935 47.826 0.00 0.00 0.00 4.30
4959 5282 3.054728 TCATCTATTTTGCAACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
4960 5283 2.985896 TCTATTTTGCAACGGAGGGAG 58.014 47.619 0.00 0.00 0.00 4.30
4966 5289 1.886886 TGCAACGGAGGGAGTAAAAC 58.113 50.000 0.00 0.00 0.00 2.43
5035 5361 7.776933 TGAATATCACTCTGAATAAGTGTGC 57.223 36.000 3.45 0.00 45.80 4.57
5052 5378 3.758554 GTGTGCCCATCTGTTGTCTAATT 59.241 43.478 0.00 0.00 0.00 1.40
5061 5387 7.542130 CCCATCTGTTGTCTAATTTGCTTTTAC 59.458 37.037 0.00 0.00 0.00 2.01
5218 5544 5.909054 TCGTGTTTAACTAGTACAACGTCTG 59.091 40.000 0.00 0.00 0.00 3.51
5242 5568 9.360093 CTGTCTGTTTTGGATCTTAACTAGTAG 57.640 37.037 0.00 0.00 0.00 2.57
5302 5628 5.964958 TTGACAAGACCTCCAAATCAATC 57.035 39.130 0.00 0.00 0.00 2.67
5418 5745 5.588648 GGCTGGCTGTAAATAATGACTGTAA 59.411 40.000 0.00 0.00 0.00 2.41
5421 5748 7.857885 GCTGGCTGTAAATAATGACTGTAAATC 59.142 37.037 0.00 0.00 0.00 2.17
5450 5777 6.380846 TCAAATCTTGGCTGGCTGTAAATAAT 59.619 34.615 2.00 0.00 0.00 1.28
5451 5778 5.779529 ATCTTGGCTGGCTGTAAATAATG 57.220 39.130 2.00 0.00 0.00 1.90
5452 5779 4.854173 TCTTGGCTGGCTGTAAATAATGA 58.146 39.130 2.00 0.00 0.00 2.57
5453 5780 5.448654 TCTTGGCTGGCTGTAAATAATGAT 58.551 37.500 2.00 0.00 0.00 2.45
5454 5781 5.893255 TCTTGGCTGGCTGTAAATAATGATT 59.107 36.000 2.00 0.00 0.00 2.57
5456 5783 4.955450 TGGCTGGCTGTAAATAATGATTGT 59.045 37.500 2.00 0.00 0.00 2.71
5457 5784 6.125719 TGGCTGGCTGTAAATAATGATTGTA 58.874 36.000 2.00 0.00 0.00 2.41
5458 5785 6.039270 TGGCTGGCTGTAAATAATGATTGTAC 59.961 38.462 2.00 0.00 0.00 2.90
5459 5786 6.039270 GGCTGGCTGTAAATAATGATTGTACA 59.961 38.462 0.00 0.00 0.00 2.90
5460 5787 7.255590 GGCTGGCTGTAAATAATGATTGTACAT 60.256 37.037 0.00 0.00 0.00 2.29
5461 5788 8.137437 GCTGGCTGTAAATAATGATTGTACATT 58.863 33.333 0.00 0.00 42.17 2.71
5475 5802 9.811995 ATGATTGTACATTTGATCAAATCTTGG 57.188 29.630 27.08 19.07 38.84 3.61
5476 5803 7.760794 TGATTGTACATTTGATCAAATCTTGGC 59.239 33.333 27.08 16.32 38.84 4.52
5477 5804 6.839124 TGTACATTTGATCAAATCTTGGCT 57.161 33.333 27.08 6.55 38.84 4.75
5478 5805 6.855836 TGTACATTTGATCAAATCTTGGCTC 58.144 36.000 27.08 14.78 38.84 4.70
5490 5819 1.001378 TCTTGGCTCGCTTTTCTTTGC 60.001 47.619 0.00 0.00 0.00 3.68
5502 5831 2.592102 TTCTTTGCCCTGCTCTTGAT 57.408 45.000 0.00 0.00 0.00 2.57
5576 5905 5.902613 TTTGAGAGAAAGCAATATGGTGG 57.097 39.130 0.00 0.00 0.00 4.61
5616 5945 8.967218 CAAAAGGTGTTACTACATTGTTCATTG 58.033 33.333 0.00 0.00 36.50 2.82
5635 5964 7.055667 TCATTGGTCTAGTTGTCTATCCATC 57.944 40.000 0.00 0.00 33.60 3.51
5636 5965 5.871396 TTGGTCTAGTTGTCTATCCATCC 57.129 43.478 0.00 0.00 33.60 3.51
5637 5966 4.878968 TGGTCTAGTTGTCTATCCATCCA 58.121 43.478 0.00 0.00 30.94 3.41
5638 5967 5.467738 TGGTCTAGTTGTCTATCCATCCAT 58.532 41.667 0.00 0.00 30.94 3.41
5693 6022 2.464796 TCTAAGATGCCCTTCGGGTA 57.535 50.000 0.21 0.00 46.51 3.69
5765 6128 2.296471 CGACCCAGGTACATACTGATCC 59.704 54.545 0.00 0.00 38.20 3.36
5786 6157 0.322456 GGTACCTCATGTGCTGCCAA 60.322 55.000 4.06 0.00 0.00 4.52
5821 6192 4.469657 TGGGCAAAACTCATACTTCACTT 58.530 39.130 0.00 0.00 0.00 3.16
5833 6204 8.725148 ACTCATACTTCACTTAATCAAAAGCAG 58.275 33.333 0.00 0.00 0.00 4.24
5908 6279 5.192522 AGTCCCTTGTGAATTGTGATCCTAT 59.807 40.000 0.00 0.00 0.00 2.57
5920 6299 9.330063 GAATTGTGATCCTATTGTCAATCTACA 57.670 33.333 0.07 0.00 0.00 2.74
5944 6323 9.423061 ACATGGCATTTCTTTTGTTACTAAATC 57.577 29.630 0.00 0.00 0.00 2.17
5996 6375 0.752658 GGAACCAAAAACCTGCTGCT 59.247 50.000 0.00 0.00 0.00 4.24
5997 6376 1.538849 GGAACCAAAAACCTGCTGCTG 60.539 52.381 0.00 0.00 0.00 4.41
5998 6377 0.465287 AACCAAAAACCTGCTGCTGG 59.535 50.000 22.17 22.17 0.00 4.85
5999 6378 0.687427 ACCAAAAACCTGCTGCTGGT 60.687 50.000 23.51 23.51 37.28 4.00
6000 6379 0.249573 CCAAAAACCTGCTGCTGGTG 60.250 55.000 28.47 16.99 35.88 4.17
6001 6380 0.249573 CAAAAACCTGCTGCTGGTGG 60.250 55.000 28.47 15.95 35.88 4.61
6002 6381 2.031674 AAAAACCTGCTGCTGGTGGC 62.032 55.000 28.47 0.00 35.88 5.01
6003 6382 4.982701 AACCTGCTGCTGGTGGCC 62.983 66.667 28.47 0.00 40.92 5.36
6005 6384 4.753662 CCTGCTGCTGGTGGCCAT 62.754 66.667 9.72 0.00 40.92 4.40
6025 6414 1.882912 TGTGGCCGCATCAGATTATC 58.117 50.000 16.89 0.00 0.00 1.75
6061 6450 0.393537 AACTAGTGCTGGCAGGCATC 60.394 55.000 17.64 9.32 44.34 3.91
6078 6468 2.602878 CATCACAGCCATTTGTTCTGC 58.397 47.619 0.00 0.00 0.00 4.26
6080 6470 1.337703 TCACAGCCATTTGTTCTGCAC 59.662 47.619 0.00 0.00 0.00 4.57
6084 6474 1.067516 AGCCATTTGTTCTGCACACAC 59.932 47.619 0.00 0.00 33.98 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 121 4.886121 GGCAGTACCGCCGCCTAC 62.886 72.222 3.90 0.00 43.52 3.18
335 345 0.108207 TTAAAACCGGCCACGAAGGA 59.892 50.000 0.00 0.00 44.60 3.36
375 386 8.360325 ACTGAAATGCATGCATATTTAACATG 57.640 30.769 32.36 16.88 43.21 3.21
430 442 2.736995 GCGTGCGCCTAACACTGA 60.737 61.111 4.18 0.00 35.84 3.41
469 481 2.184167 CCAGGCGGACACAAACGTT 61.184 57.895 0.00 0.00 0.00 3.99
557 572 0.615331 ACAGAATCGTCATGGGCACT 59.385 50.000 0.00 0.00 0.00 4.40
559 574 0.904649 AGACAGAATCGTCATGGGCA 59.095 50.000 7.67 0.00 38.43 5.36
561 576 2.680312 ACAGACAGAATCGTCATGGG 57.320 50.000 7.67 0.00 38.43 4.00
562 577 4.748892 AGTAACAGACAGAATCGTCATGG 58.251 43.478 7.67 1.28 38.43 3.66
564 579 5.635280 CACAAGTAACAGACAGAATCGTCAT 59.365 40.000 7.67 0.00 38.43 3.06
565 580 4.982295 CACAAGTAACAGACAGAATCGTCA 59.018 41.667 7.67 0.00 38.43 4.35
566 581 5.220381 TCACAAGTAACAGACAGAATCGTC 58.780 41.667 0.00 0.00 36.08 4.20
567 582 5.196341 TCACAAGTAACAGACAGAATCGT 57.804 39.130 0.00 0.00 0.00 3.73
568 583 4.090642 GCTCACAAGTAACAGACAGAATCG 59.909 45.833 0.00 0.00 0.00 3.34
569 584 4.991056 TGCTCACAAGTAACAGACAGAATC 59.009 41.667 0.00 0.00 0.00 2.52
570 585 4.752101 GTGCTCACAAGTAACAGACAGAAT 59.248 41.667 0.00 0.00 0.00 2.40
571 586 4.119862 GTGCTCACAAGTAACAGACAGAA 58.880 43.478 0.00 0.00 0.00 3.02
572 587 3.384789 AGTGCTCACAAGTAACAGACAGA 59.615 43.478 2.63 0.00 0.00 3.41
573 588 3.492383 CAGTGCTCACAAGTAACAGACAG 59.508 47.826 2.63 0.00 0.00 3.51
574 589 3.132111 TCAGTGCTCACAAGTAACAGACA 59.868 43.478 2.63 0.00 0.00 3.41
575 590 3.717707 TCAGTGCTCACAAGTAACAGAC 58.282 45.455 2.63 0.00 0.00 3.51
576 591 4.607293 ATCAGTGCTCACAAGTAACAGA 57.393 40.909 2.63 0.00 0.00 3.41
577 592 5.679734 AAATCAGTGCTCACAAGTAACAG 57.320 39.130 2.63 0.00 0.00 3.16
578 593 7.744087 ATAAAATCAGTGCTCACAAGTAACA 57.256 32.000 2.63 0.00 0.00 2.41
579 594 8.289618 TGAATAAAATCAGTGCTCACAAGTAAC 58.710 33.333 2.63 0.00 0.00 2.50
580 595 8.289618 GTGAATAAAATCAGTGCTCACAAGTAA 58.710 33.333 2.63 0.00 33.54 2.24
581 596 7.360017 CGTGAATAAAATCAGTGCTCACAAGTA 60.360 37.037 2.63 0.00 33.02 2.24
582 597 6.566564 CGTGAATAAAATCAGTGCTCACAAGT 60.567 38.462 2.63 0.00 33.02 3.16
583 598 5.791974 CGTGAATAAAATCAGTGCTCACAAG 59.208 40.000 2.63 0.00 33.02 3.16
584 599 5.238432 ACGTGAATAAAATCAGTGCTCACAA 59.762 36.000 2.63 0.00 33.02 3.33
585 600 4.754618 ACGTGAATAAAATCAGTGCTCACA 59.245 37.500 2.63 0.00 33.02 3.58
586 601 5.283060 ACGTGAATAAAATCAGTGCTCAC 57.717 39.130 0.00 0.00 0.00 3.51
587 602 5.238432 ACAACGTGAATAAAATCAGTGCTCA 59.762 36.000 0.00 0.00 0.00 4.26
588 603 5.565259 CACAACGTGAATAAAATCAGTGCTC 59.435 40.000 0.00 0.00 35.23 4.26
589 604 5.451908 CACAACGTGAATAAAATCAGTGCT 58.548 37.500 0.00 0.00 35.23 4.40
590 605 4.088496 GCACAACGTGAATAAAATCAGTGC 59.912 41.667 0.00 0.00 39.20 4.40
599 614 5.218885 CCAATTCTTGCACAACGTGAATAA 58.781 37.500 0.00 0.00 35.23 1.40
601 616 3.068024 ACCAATTCTTGCACAACGTGAAT 59.932 39.130 0.00 0.00 35.23 2.57
606 621 2.772568 TCACCAATTCTTGCACAACG 57.227 45.000 0.00 0.00 0.00 4.10
607 622 3.981211 ACATCACCAATTCTTGCACAAC 58.019 40.909 0.00 0.00 0.00 3.32
631 646 5.123820 GTGGCAAATGCACTAGAATCTGTAA 59.876 40.000 7.80 0.00 44.36 2.41
634 649 3.441222 TGTGGCAAATGCACTAGAATCTG 59.559 43.478 7.80 0.00 44.36 2.90
640 655 1.608109 TGTGTGTGGCAAATGCACTAG 59.392 47.619 7.80 0.00 44.36 2.57
679 696 0.616679 TTCGATCCGTTCCCTTCCCT 60.617 55.000 0.00 0.00 0.00 4.20
680 697 0.461516 GTTCGATCCGTTCCCTTCCC 60.462 60.000 0.00 0.00 0.00 3.97
681 698 0.535797 AGTTCGATCCGTTCCCTTCC 59.464 55.000 0.00 0.00 0.00 3.46
682 699 1.641577 CAGTTCGATCCGTTCCCTTC 58.358 55.000 0.00 0.00 0.00 3.46
683 700 0.249398 CCAGTTCGATCCGTTCCCTT 59.751 55.000 0.00 0.00 0.00 3.95
1087 1126 3.622826 CTCGGTGGTGGGGACGTT 61.623 66.667 0.00 0.00 0.00 3.99
1159 1201 1.144496 GCCGGGACCGTAAGCATTA 59.856 57.895 2.18 0.00 37.81 1.90
1224 1266 1.419922 CATGAAACGGAAGCGGACG 59.580 57.895 0.00 0.00 0.00 4.79
1252 1295 2.586258 AGATTCGGTTGATCTGACGG 57.414 50.000 0.00 0.00 0.00 4.79
1305 1378 1.529713 GCCCGTTCCCCAAAAGACA 60.530 57.895 0.00 0.00 0.00 3.41
1312 1385 0.983905 TAGCAATAGCCCGTTCCCCA 60.984 55.000 0.00 0.00 43.56 4.96
1313 1386 0.400594 ATAGCAATAGCCCGTTCCCC 59.599 55.000 0.00 0.00 43.56 4.81
1360 1444 1.064296 ATGACGGCGAGCTCGTTAG 59.936 57.895 34.46 26.47 41.22 2.34
1364 1448 2.026734 ATCATGACGGCGAGCTCG 59.973 61.111 31.37 31.37 43.27 5.03
1398 1482 7.759886 CACATAAAGCCTATATATGCACGTAGT 59.240 37.037 11.89 3.17 33.91 2.73
1423 1507 2.159240 ACTTCTCGCGATGATTAGCACA 60.159 45.455 10.36 0.00 0.00 4.57
1504 1588 5.189180 GCATATTTTTGCCCCCACAATAAA 58.811 37.500 0.00 0.00 36.60 1.40
1509 1593 1.649321 TGCATATTTTTGCCCCCACA 58.351 45.000 0.00 0.00 42.06 4.17
1512 1596 2.501316 AGACTTGCATATTTTTGCCCCC 59.499 45.455 0.00 0.00 42.06 5.40
1517 1601 7.007725 CGAAGCTAACAGACTTGCATATTTTTG 59.992 37.037 0.00 0.00 0.00 2.44
1518 1602 7.023575 CGAAGCTAACAGACTTGCATATTTTT 58.976 34.615 0.00 0.00 0.00 1.94
1519 1603 6.371548 TCGAAGCTAACAGACTTGCATATTTT 59.628 34.615 0.00 0.00 0.00 1.82
1520 1604 5.874810 TCGAAGCTAACAGACTTGCATATTT 59.125 36.000 0.00 0.00 0.00 1.40
1524 1608 3.257393 CTCGAAGCTAACAGACTTGCAT 58.743 45.455 0.00 0.00 0.00 3.96
1550 1634 0.323178 AATTGCAGGCCAGGAGTCAG 60.323 55.000 5.01 0.00 0.00 3.51
1574 1658 7.377928 GCAAATTAGCATATCTACAGCAACAAG 59.622 37.037 0.00 0.00 0.00 3.16
1581 1887 4.434725 CGCCGCAAATTAGCATATCTACAG 60.435 45.833 0.00 0.00 0.00 2.74
1653 1959 3.221771 TGGGTTCTCCACAACAAGATTG 58.778 45.455 0.00 0.00 41.46 2.67
1712 2018 2.025441 GCCGCAAGCAACGTCAAA 59.975 55.556 0.00 0.00 42.97 2.69
1740 2046 8.831550 CAGCCTAAATCTACAGGAATTTAAGTC 58.168 37.037 0.00 0.00 33.42 3.01
1774 2080 1.474143 GCAAGGTGCTCCAGAGTATCC 60.474 57.143 7.70 0.00 40.96 2.59
1886 2193 3.073650 GCTTTATCATCCTGATCCCACCT 59.926 47.826 0.00 0.00 38.26 4.00
1908 2215 5.462398 GGCTATCTGAACTAACATGTTACCG 59.538 44.000 14.35 8.57 0.00 4.02
1956 2263 0.392461 GGGCTTGCGGTGAGACATTA 60.392 55.000 0.00 0.00 0.00 1.90
1957 2264 1.675641 GGGCTTGCGGTGAGACATT 60.676 57.895 0.00 0.00 0.00 2.71
1993 2300 4.036734 CAGCATGTTCTGTTGGTTGTAACT 59.963 41.667 0.00 0.00 32.82 2.24
2028 2335 5.405935 AACCAGGAAAATGAATAACTGCC 57.594 39.130 0.00 0.00 0.00 4.85
2045 2352 2.483714 CCGAGGATACATGTGGAACCAG 60.484 54.545 9.11 5.14 41.41 4.00
2118 2425 5.231702 TGATGCAACTGAATGTTTTCATGG 58.768 37.500 0.00 0.00 40.95 3.66
2313 2626 5.946972 TCTAAGGCTCCATACTAGCAGTATC 59.053 44.000 6.01 0.00 39.26 2.24
2373 2686 4.201657 TGCACAATAGCTGAATATGCACT 58.798 39.130 9.55 0.00 36.72 4.40
2378 2691 6.351711 TGAGAAGTGCACAATAGCTGAATAT 58.648 36.000 21.04 0.00 34.99 1.28
2418 2731 1.745653 GCAGCCTTAGTTGGATTCCAC 59.254 52.381 4.45 1.09 30.78 4.02
2562 2882 5.308497 TCGGCATTAAATATTACTCCCTCCA 59.692 40.000 0.00 0.00 0.00 3.86
2602 2922 6.312672 AGAAACAGTTTGTGGTTGCAAAATAC 59.687 34.615 2.34 1.07 35.62 1.89
2743 3064 9.597681 CTCTTATATTAGTTTACAGAGGGGGTA 57.402 37.037 0.00 0.00 0.00 3.69
2744 3065 7.016366 GCTCTTATATTAGTTTACAGAGGGGGT 59.984 40.741 0.00 0.00 0.00 4.95
2745 3066 7.387643 GCTCTTATATTAGTTTACAGAGGGGG 58.612 42.308 0.00 0.00 0.00 5.40
2746 3067 7.091443 CGCTCTTATATTAGTTTACAGAGGGG 58.909 42.308 0.00 0.00 36.63 4.79
2747 3068 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2748 3069 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2798 3119 9.985730 CACAATTATTACCTATTACCTCCGTAA 57.014 33.333 0.00 0.00 38.79 3.18
2799 3120 9.146586 ACACAATTATTACCTATTACCTCCGTA 57.853 33.333 0.00 0.00 0.00 4.02
2800 3121 8.026396 ACACAATTATTACCTATTACCTCCGT 57.974 34.615 0.00 0.00 0.00 4.69
2801 3122 9.635520 CTACACAATTATTACCTATTACCTCCG 57.364 37.037 0.00 0.00 0.00 4.63
2802 3123 9.939802 CCTACACAATTATTACCTATTACCTCC 57.060 37.037 0.00 0.00 0.00 4.30
2805 3126 8.996271 GCACCTACACAATTATTACCTATTACC 58.004 37.037 0.00 0.00 0.00 2.85
2806 3127 9.550406 TGCACCTACACAATTATTACCTATTAC 57.450 33.333 0.00 0.00 0.00 1.89
2807 3128 9.550406 GTGCACCTACACAATTATTACCTATTA 57.450 33.333 5.22 0.00 40.40 0.98
2808 3129 8.446599 GTGCACCTACACAATTATTACCTATT 57.553 34.615 5.22 0.00 40.40 1.73
2883 3204 4.876580 AGGAACCCCTAGTACGTTAAGAT 58.123 43.478 0.00 0.00 42.15 2.40
2885 3206 4.019174 TGAGGAACCCCTAGTACGTTAAG 58.981 47.826 0.00 0.00 44.53 1.85
2891 3212 4.100653 GGTAACATGAGGAACCCCTAGTAC 59.899 50.000 0.00 0.00 44.53 2.73
3136 3457 3.810743 GCACCACCCTCAGAATTGTTAGT 60.811 47.826 0.00 0.00 0.00 2.24
3336 3657 3.869246 AGAAATCGGTAATAGCAACCACG 59.131 43.478 0.00 0.00 36.78 4.94
3369 3690 1.404391 GTGCTTGATTCTGATGCAGGG 59.596 52.381 0.00 0.00 34.15 4.45
3414 3735 3.188048 GCAAGTGATATATGGCAGCTGAC 59.812 47.826 20.43 17.52 0.00 3.51
3525 3846 4.209703 TCGAGTGTAAATTCACGACCAAAC 59.790 41.667 0.00 0.00 42.40 2.93
3929 4250 6.428083 TCCTAACAGTTGAACCATCACTAA 57.572 37.500 0.00 0.00 34.61 2.24
3930 4251 6.620877 ATCCTAACAGTTGAACCATCACTA 57.379 37.500 0.00 0.00 34.61 2.74
3935 4256 7.466804 TCCTTTTATCCTAACAGTTGAACCAT 58.533 34.615 0.00 0.00 0.00 3.55
3984 4305 2.985896 ACATTTGATTCGGTGTCGGAT 58.014 42.857 0.00 0.00 37.30 4.18
4115 4436 3.069443 AGGCATGGTTGGTAAACTGTTTG 59.931 43.478 15.69 0.00 36.48 2.93
4139 4460 3.399330 ACACAATCCTTTCGGTGTACTG 58.601 45.455 0.00 0.00 42.24 2.74
4148 4469 3.636764 ACCTTGACCAACACAATCCTTTC 59.363 43.478 0.00 0.00 0.00 2.62
4306 4627 0.654160 TCAGTACGACGCCGATACAG 59.346 55.000 0.00 0.00 39.50 2.74
4307 4628 1.262417 GATCAGTACGACGCCGATACA 59.738 52.381 0.00 0.00 39.50 2.29
4308 4629 1.262417 TGATCAGTACGACGCCGATAC 59.738 52.381 0.00 0.00 39.50 2.24
4310 4631 0.952280 ATGATCAGTACGACGCCGAT 59.048 50.000 0.00 0.00 39.50 4.18
4369 4690 0.328592 TTAACCACCTTGGCGCCATA 59.671 50.000 33.25 19.81 42.67 2.74
4454 4775 5.648960 TGATCTGTAATTGCTGCTTCATCAA 59.351 36.000 0.00 0.00 0.00 2.57
4534 4855 2.557452 CCACCTTCAAACTTGGGCCTAT 60.557 50.000 4.53 0.00 0.00 2.57
4572 4893 3.254657 CGCCAAAAGACCTTAATGTTCCA 59.745 43.478 0.00 0.00 0.00 3.53
4669 4990 4.586421 TGTGTTGCAATAATTTCAGGTGGA 59.414 37.500 0.59 0.00 0.00 4.02
4871 5194 6.811634 TTTGGAACGGAGGGAGTATTATTA 57.188 37.500 0.00 0.00 0.00 0.98
4877 5200 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4878 5201 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4879 5202 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4880 5203 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4881 5204 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4882 5205 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4883 5206 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4884 5207 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4885 5208 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4886 5209 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4887 5210 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4888 5211 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
4889 5212 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
4890 5213 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
4891 5214 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4892 5215 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4893 5216 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
4894 5217 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
4895 5218 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
4896 5219 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
4897 5220 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
4898 5221 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
4899 5222 8.983702 TTAACTTTAGTACAAAGTTGGGTCAT 57.016 30.769 27.85 14.43 46.41 3.06
4900 5223 8.983702 ATTAACTTTAGTACAAAGTTGGGTCA 57.016 30.769 27.85 15.73 46.41 4.02
4902 5225 9.850198 TGTATTAACTTTAGTACAAAGTTGGGT 57.150 29.630 27.85 20.50 46.41 4.51
4923 5246 9.846248 GCAAAATAGATGACTCAACTTTGTATT 57.154 29.630 0.00 0.00 0.00 1.89
4924 5247 9.013229 TGCAAAATAGATGACTCAACTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
4925 5248 8.389779 TGCAAAATAGATGACTCAACTTTGTA 57.610 30.769 0.00 0.00 0.00 2.41
4926 5249 7.275888 TGCAAAATAGATGACTCAACTTTGT 57.724 32.000 0.00 0.00 0.00 2.83
4927 5250 7.149080 CGTTGCAAAATAGATGACTCAACTTTG 60.149 37.037 0.00 0.00 32.76 2.77
4928 5251 6.857964 CGTTGCAAAATAGATGACTCAACTTT 59.142 34.615 0.00 0.00 32.76 2.66
4929 5252 6.373779 CGTTGCAAAATAGATGACTCAACTT 58.626 36.000 0.00 0.00 32.76 2.66
4930 5253 5.106555 CCGTTGCAAAATAGATGACTCAACT 60.107 40.000 0.00 0.00 32.76 3.16
4931 5254 5.088739 CCGTTGCAAAATAGATGACTCAAC 58.911 41.667 0.00 0.00 0.00 3.18
4932 5255 5.000591 TCCGTTGCAAAATAGATGACTCAA 58.999 37.500 0.00 0.00 0.00 3.02
4933 5256 4.574892 TCCGTTGCAAAATAGATGACTCA 58.425 39.130 0.00 0.00 0.00 3.41
4934 5257 4.034510 CCTCCGTTGCAAAATAGATGACTC 59.965 45.833 0.00 0.00 0.00 3.36
4935 5258 3.941483 CCTCCGTTGCAAAATAGATGACT 59.059 43.478 0.00 0.00 0.00 3.41
4936 5259 3.065371 CCCTCCGTTGCAAAATAGATGAC 59.935 47.826 0.00 0.00 0.00 3.06
4937 5260 3.054728 TCCCTCCGTTGCAAAATAGATGA 60.055 43.478 0.00 0.00 0.00 2.92
4938 5261 3.278574 TCCCTCCGTTGCAAAATAGATG 58.721 45.455 0.00 0.00 0.00 2.90
4939 5262 3.054361 ACTCCCTCCGTTGCAAAATAGAT 60.054 43.478 0.00 0.00 0.00 1.98
4940 5263 2.304761 ACTCCCTCCGTTGCAAAATAGA 59.695 45.455 0.00 0.00 0.00 1.98
4941 5264 2.711542 ACTCCCTCCGTTGCAAAATAG 58.288 47.619 0.00 0.00 0.00 1.73
4942 5265 2.871096 ACTCCCTCCGTTGCAAAATA 57.129 45.000 0.00 0.00 0.00 1.40
4943 5266 2.871096 TACTCCCTCCGTTGCAAAAT 57.129 45.000 0.00 0.00 0.00 1.82
4944 5267 2.642154 TTACTCCCTCCGTTGCAAAA 57.358 45.000 0.00 0.00 0.00 2.44
4945 5268 2.619646 GTTTTACTCCCTCCGTTGCAAA 59.380 45.455 0.00 0.00 0.00 3.68
4946 5269 2.158726 AGTTTTACTCCCTCCGTTGCAA 60.159 45.455 0.00 0.00 0.00 4.08
4947 5270 1.418637 AGTTTTACTCCCTCCGTTGCA 59.581 47.619 0.00 0.00 0.00 4.08
4948 5271 1.804748 CAGTTTTACTCCCTCCGTTGC 59.195 52.381 0.00 0.00 0.00 4.17
4949 5272 3.396260 TCAGTTTTACTCCCTCCGTTG 57.604 47.619 0.00 0.00 0.00 4.10
4950 5273 4.635699 ATTCAGTTTTACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
4951 5274 4.202430 ACAATTCAGTTTTACTCCCTCCGT 60.202 41.667 0.00 0.00 0.00 4.69
4952 5275 4.324267 ACAATTCAGTTTTACTCCCTCCG 58.676 43.478 0.00 0.00 0.00 4.63
4953 5276 7.281100 CAGATACAATTCAGTTTTACTCCCTCC 59.719 40.741 0.00 0.00 0.00 4.30
4954 5277 7.824779 ACAGATACAATTCAGTTTTACTCCCTC 59.175 37.037 0.00 0.00 0.00 4.30
4955 5278 7.690256 ACAGATACAATTCAGTTTTACTCCCT 58.310 34.615 0.00 0.00 0.00 4.20
4956 5279 7.923414 ACAGATACAATTCAGTTTTACTCCC 57.077 36.000 0.00 0.00 0.00 4.30
4957 5280 8.784043 ACAACAGATACAATTCAGTTTTACTCC 58.216 33.333 0.00 0.00 0.00 3.85
5035 5361 5.649782 AAGCAAATTAGACAACAGATGGG 57.350 39.130 0.00 0.00 0.00 4.00
5052 5378 7.575414 TCAATAACCTGTTGAGTAAAAGCAA 57.425 32.000 0.00 0.00 32.23 3.91
5061 5387 7.730364 AAGTGTAGTTCAATAACCTGTTGAG 57.270 36.000 0.00 0.00 36.96 3.02
5218 5544 9.575783 CTCTACTAGTTAAGATCCAAAACAGAC 57.424 37.037 0.00 0.00 0.00 3.51
5302 5628 3.503827 TGTATTCTGCACCACTAGACG 57.496 47.619 0.00 0.00 0.00 4.18
5418 5745 3.383825 GCCAGCCAAGATTTGATCAGATT 59.616 43.478 0.00 0.00 0.00 2.40
5421 5748 2.099263 CAGCCAGCCAAGATTTGATCAG 59.901 50.000 0.00 0.00 0.00 2.90
5450 5777 7.760794 GCCAAGATTTGATCAAATGTACAATCA 59.239 33.333 32.89 5.06 40.77 2.57
5451 5778 7.977853 AGCCAAGATTTGATCAAATGTACAATC 59.022 33.333 32.89 19.60 40.77 2.67
5452 5779 7.844009 AGCCAAGATTTGATCAAATGTACAAT 58.156 30.769 32.89 14.75 40.77 2.71
5453 5780 7.230849 AGCCAAGATTTGATCAAATGTACAA 57.769 32.000 32.89 7.28 40.77 2.41
5454 5781 6.403527 CGAGCCAAGATTTGATCAAATGTACA 60.404 38.462 32.89 8.02 40.77 2.90
5456 5783 5.449041 GCGAGCCAAGATTTGATCAAATGTA 60.449 40.000 32.89 9.15 40.77 2.29
5457 5784 4.676196 GCGAGCCAAGATTTGATCAAATGT 60.676 41.667 32.89 27.25 40.77 2.71
5458 5785 3.795101 GCGAGCCAAGATTTGATCAAATG 59.205 43.478 32.89 21.79 40.77 2.32
5459 5786 3.698040 AGCGAGCCAAGATTTGATCAAAT 59.302 39.130 29.31 29.31 43.14 2.32
5460 5787 3.084039 AGCGAGCCAAGATTTGATCAAA 58.916 40.909 22.52 22.52 34.46 2.69
5461 5788 2.715046 AGCGAGCCAAGATTTGATCAA 58.285 42.857 3.38 3.38 0.00 2.57
5466 5793 3.565905 AGAAAAGCGAGCCAAGATTTG 57.434 42.857 0.00 0.00 0.00 2.32
5467 5794 4.301628 CAAAGAAAAGCGAGCCAAGATTT 58.698 39.130 0.00 0.00 0.00 2.17
5468 5795 3.858503 GCAAAGAAAAGCGAGCCAAGATT 60.859 43.478 0.00 0.00 0.00 2.40
5469 5796 2.352127 GCAAAGAAAAGCGAGCCAAGAT 60.352 45.455 0.00 0.00 0.00 2.40
5473 5800 1.659794 GGCAAAGAAAAGCGAGCCA 59.340 52.632 0.00 0.00 41.63 4.75
5474 5801 1.080501 GGGCAAAGAAAAGCGAGCC 60.081 57.895 0.00 0.00 41.29 4.70
5475 5802 0.387750 CAGGGCAAAGAAAAGCGAGC 60.388 55.000 0.00 0.00 0.00 5.03
5476 5803 0.387750 GCAGGGCAAAGAAAAGCGAG 60.388 55.000 0.00 0.00 0.00 5.03
5477 5804 0.823356 AGCAGGGCAAAGAAAAGCGA 60.823 50.000 0.00 0.00 0.00 4.93
5478 5805 0.387750 GAGCAGGGCAAAGAAAAGCG 60.388 55.000 0.00 0.00 0.00 4.68
5490 5819 2.885266 CCATCATTGATCAAGAGCAGGG 59.115 50.000 14.54 6.75 0.00 4.45
5524 5853 4.952957 TGAAATGGAAAAGGACACTGACAA 59.047 37.500 0.00 0.00 0.00 3.18
5529 5858 8.655935 AAGAATATGAAATGGAAAAGGACACT 57.344 30.769 0.00 0.00 0.00 3.55
5600 5929 8.372459 ACAACTAGACCAATGAACAATGTAGTA 58.628 33.333 0.00 0.00 0.00 1.82
5601 5930 7.224297 ACAACTAGACCAATGAACAATGTAGT 58.776 34.615 0.00 0.00 0.00 2.73
5602 5931 7.604164 AGACAACTAGACCAATGAACAATGTAG 59.396 37.037 0.00 0.00 0.00 2.74
5616 5945 6.226787 CAATGGATGGATAGACAACTAGACC 58.773 44.000 0.00 0.00 33.21 3.85
5635 5964 4.392754 GGAAAATAAAAGCCAGTGCAATGG 59.607 41.667 28.45 28.45 43.72 3.16
5636 5965 5.240121 AGGAAAATAAAAGCCAGTGCAATG 58.760 37.500 7.29 7.29 41.13 2.82
5637 5966 5.482006 GAGGAAAATAAAAGCCAGTGCAAT 58.518 37.500 0.00 0.00 41.13 3.56
5638 5967 4.558496 CGAGGAAAATAAAAGCCAGTGCAA 60.558 41.667 0.00 0.00 41.13 4.08
5715 6044 4.228824 CCCCCAAATTCCTCATTCATGAT 58.771 43.478 0.00 0.00 36.02 2.45
5716 6045 3.645434 CCCCCAAATTCCTCATTCATGA 58.355 45.455 0.00 0.00 35.16 3.07
5765 6128 0.745845 GGCAGCACATGAGGTACCTG 60.746 60.000 22.10 8.81 33.50 4.00
5786 6157 2.118294 GCCCAAGGGAAGCCAACT 59.882 61.111 9.92 0.00 37.50 3.16
5833 6204 7.205992 TCTCATGTATGTATTCTGAGAGCAAC 58.794 38.462 0.00 0.00 37.89 4.17
5863 6234 6.935208 GGACTCTGTTCACTAATGTACCTTTT 59.065 38.462 0.00 0.00 0.00 2.27
5908 6279 6.839124 AAGAAATGCCATGTAGATTGACAA 57.161 33.333 0.00 0.00 31.83 3.18
5920 6299 8.815912 AGGATTTAGTAACAAAAGAAATGCCAT 58.184 29.630 0.00 0.00 30.68 4.40
5982 6361 0.249573 CCACCAGCAGCAGGTTTTTG 60.250 55.000 6.77 0.00 37.23 2.44
5985 6364 2.914097 GCCACCAGCAGCAGGTTT 60.914 61.111 6.77 0.00 42.97 3.27
6002 6381 1.105167 ATCTGATGCGGCCACAATGG 61.105 55.000 2.24 0.00 41.55 3.16
6003 6382 0.742505 AATCTGATGCGGCCACAATG 59.257 50.000 2.24 0.00 0.00 2.82
6004 6383 2.346766 TAATCTGATGCGGCCACAAT 57.653 45.000 2.24 0.00 0.00 2.71
6005 6384 2.158769 AGATAATCTGATGCGGCCACAA 60.159 45.455 2.24 0.00 0.00 3.33
6025 6414 8.352942 AGCACTAGTTTCTTAATTTTGTTCCAG 58.647 33.333 0.00 0.00 0.00 3.86
6061 6450 1.067364 TGTGCAGAACAAATGGCTGTG 59.933 47.619 0.00 0.00 35.24 3.66
6078 6468 4.751600 TCAGATAAACAAGCTCAGTGTGTG 59.248 41.667 0.00 0.00 0.00 3.82
6080 6470 5.237127 TGTTCAGATAAACAAGCTCAGTGTG 59.763 40.000 0.00 0.00 36.25 3.82
6084 6474 4.999950 AGGTGTTCAGATAAACAAGCTCAG 59.000 41.667 0.00 0.00 40.62 3.35
6160 6550 4.439289 GGATGAGAAGTGGCTTAAACATGC 60.439 45.833 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.