Multiple sequence alignment - TraesCS7B01G392900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G392900 chr7B 100.000 5118 0 0 1 5118 659648801 659653918 0.000000e+00 9452
1 TraesCS7B01G392900 chr7B 88.718 780 77 7 1 772 586054715 586055491 0.000000e+00 942
2 TraesCS7B01G392900 chr7A 90.788 2768 184 32 770 3514 679815205 679817924 0.000000e+00 3633
3 TraesCS7B01G392900 chr7A 87.883 1568 120 32 3604 5118 679817970 679819520 0.000000e+00 1779
4 TraesCS7B01G392900 chr7D 88.188 1490 102 38 781 2244 587846692 587848133 0.000000e+00 1709
5 TraesCS7B01G392900 chr7D 83.808 1686 171 54 2618 4269 587849032 587850649 0.000000e+00 1507
6 TraesCS7B01G392900 chr7D 91.190 874 39 13 4269 5116 587850700 587851561 0.000000e+00 1153
7 TraesCS7B01G392900 chr7D 88.974 780 76 5 1 772 250317261 250318038 0.000000e+00 955
8 TraesCS7B01G392900 chr7D 89.488 761 67 8 1 752 39721028 39720272 0.000000e+00 950
9 TraesCS7B01G392900 chr7D 92.083 240 14 1 2285 2524 587848227 587848461 2.950000e-87 333
10 TraesCS7B01G392900 chr3D 88.988 781 72 7 1 773 561766166 561766940 0.000000e+00 953
11 TraesCS7B01G392900 chr3D 94.505 91 5 0 2747 2837 390120503 390120593 1.920000e-29 141
12 TraesCS7B01G392900 chr2D 88.832 779 75 5 1 772 499720044 499720817 0.000000e+00 946
13 TraesCS7B01G392900 chr1D 88.348 781 73 10 1 773 399776038 399776808 0.000000e+00 922
14 TraesCS7B01G392900 chr6A 88.220 781 77 10 1 771 444869244 444868469 0.000000e+00 918
15 TraesCS7B01G392900 chr4D 88.010 784 77 8 1 775 37497538 37496763 0.000000e+00 911
16 TraesCS7B01G392900 chr5D 87.883 784 76 10 1 774 434346330 434347104 0.000000e+00 904
17 TraesCS7B01G392900 chr4B 76.634 505 82 23 2338 2837 428697800 428698273 3.960000e-61 246
18 TraesCS7B01G392900 chr1B 78.125 352 51 17 2491 2837 542696574 542696904 3.130000e-47 200
19 TraesCS7B01G392900 chr2B 76.136 352 53 18 2491 2837 791358706 791358381 6.860000e-34 156
20 TraesCS7B01G392900 chr2B 75.852 352 53 19 2491 2837 791372330 791372006 3.190000e-32 150
21 TraesCS7B01G392900 chr4A 93.407 91 6 0 2747 2837 624998187 624998097 8.940000e-28 135
22 TraesCS7B01G392900 chr1A 93.407 91 6 0 2747 2837 464243321 464243231 8.940000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G392900 chr7B 659648801 659653918 5117 False 9452.0 9452 100.00000 1 5118 1 chr7B.!!$F2 5117
1 TraesCS7B01G392900 chr7B 586054715 586055491 776 False 942.0 942 88.71800 1 772 1 chr7B.!!$F1 771
2 TraesCS7B01G392900 chr7A 679815205 679819520 4315 False 2706.0 3633 89.33550 770 5118 2 chr7A.!!$F1 4348
3 TraesCS7B01G392900 chr7D 587846692 587851561 4869 False 1175.5 1709 88.81725 781 5116 4 chr7D.!!$F2 4335
4 TraesCS7B01G392900 chr7D 250317261 250318038 777 False 955.0 955 88.97400 1 772 1 chr7D.!!$F1 771
5 TraesCS7B01G392900 chr7D 39720272 39721028 756 True 950.0 950 89.48800 1 752 1 chr7D.!!$R1 751
6 TraesCS7B01G392900 chr3D 561766166 561766940 774 False 953.0 953 88.98800 1 773 1 chr3D.!!$F2 772
7 TraesCS7B01G392900 chr2D 499720044 499720817 773 False 946.0 946 88.83200 1 772 1 chr2D.!!$F1 771
8 TraesCS7B01G392900 chr1D 399776038 399776808 770 False 922.0 922 88.34800 1 773 1 chr1D.!!$F1 772
9 TraesCS7B01G392900 chr6A 444868469 444869244 775 True 918.0 918 88.22000 1 771 1 chr6A.!!$R1 770
10 TraesCS7B01G392900 chr4D 37496763 37497538 775 True 911.0 911 88.01000 1 775 1 chr4D.!!$R1 774
11 TraesCS7B01G392900 chr5D 434346330 434347104 774 False 904.0 904 87.88300 1 774 1 chr5D.!!$F1 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 783 0.037326 TCGCTCCATTCGAGTTGCTT 60.037 50.0 0.00 0.00 41.10 3.91 F
1509 1559 0.110147 CGACCGACTGACTGACTGAC 60.110 60.0 0.00 0.00 0.00 3.51 F
2274 2332 0.324943 CTTCAGTACCCCCACTGTGG 59.675 60.0 20.01 20.01 45.11 4.17 F
3477 4087 0.668535 GTCAGTGTTTCCTTGTGCCC 59.331 55.0 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1660 1710 0.250295 GGGCTCTTACTGTGTGTGCA 60.250 55.000 9.70 0.0 0.00 4.57 R
3372 3982 0.465097 ATTCAGCTCCCATTCGCCAG 60.465 55.000 0.00 0.0 0.00 4.85 R
3580 4193 0.034476 TCCAGCTGCAGTTCAGTCAG 59.966 55.000 16.64 0.0 44.66 3.51 R
4665 5358 1.497286 ACAACAAAAGGGCAGGGTCTA 59.503 47.619 0.00 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.264005 TTACTGTCAACGGCCACAAT 57.736 45.000 2.24 0.00 0.00 2.71
31 32 2.577700 ACTGTCAACGGCCACAATTAA 58.422 42.857 2.24 0.00 0.00 1.40
32 33 2.952978 ACTGTCAACGGCCACAATTAAA 59.047 40.909 2.24 0.00 0.00 1.52
99 107 2.215942 AAGACAATACCCAACCCTGC 57.784 50.000 0.00 0.00 0.00 4.85
174 182 0.317854 GAGCGTGCCTTTGGTGTTTC 60.318 55.000 0.00 0.00 0.00 2.78
185 193 1.144969 TGGTGTTTCGCAATCTCGAC 58.855 50.000 0.00 0.00 38.30 4.20
236 244 0.880278 GAGCACGCAGAAACTGTGGA 60.880 55.000 15.06 0.00 45.11 4.02
249 257 2.329267 ACTGTGGAAGGTGATGACTGA 58.671 47.619 0.00 0.00 0.00 3.41
255 263 3.012518 GGAAGGTGATGACTGATTGTGG 58.987 50.000 0.00 0.00 0.00 4.17
259 267 3.267812 AGGTGATGACTGATTGTGGGATT 59.732 43.478 0.00 0.00 0.00 3.01
304 312 0.321298 AGCGCCCAAAACGTCTGTAT 60.321 50.000 2.29 0.00 0.00 2.29
312 320 4.935205 CCCAAAACGTCTGTATGATCAAGA 59.065 41.667 0.00 0.00 0.00 3.02
344 352 1.145738 AGGGTGAGAATGTTGTGCCTT 59.854 47.619 0.00 0.00 0.00 4.35
401 409 4.880696 TCCAATTTCATCATGACATGCGTA 59.119 37.500 10.76 0.00 0.00 4.42
453 461 2.897271 TTGGTTGAGCATATGTGGGT 57.103 45.000 4.29 0.00 0.00 4.51
509 517 8.500837 TTTATTCGTTTGCAAAACTATGTGAG 57.499 30.769 14.67 0.00 0.00 3.51
510 518 5.493133 TTCGTTTGCAAAACTATGTGAGT 57.507 34.783 14.67 0.00 41.56 3.41
543 551 7.736447 TTTTTATTGGGCTTGTAAAACCATG 57.264 32.000 0.00 0.00 33.62 3.66
552 560 6.533723 GGGCTTGTAAAACCATGCTATTTTAC 59.466 38.462 20.41 20.41 45.36 2.01
577 585 7.660208 ACTCGGTTCAAACTATGTTATTTGACT 59.340 33.333 0.00 0.00 42.87 3.41
643 651 1.520564 GCCACGCCGACACATATGA 60.521 57.895 10.38 0.00 0.00 2.15
644 652 1.087202 GCCACGCCGACACATATGAA 61.087 55.000 10.38 0.00 0.00 2.57
655 663 2.534349 ACACATATGAATCGACGCGTTC 59.466 45.455 15.53 7.59 0.00 3.95
677 689 1.863662 CGCGCTACCGACCCATATCT 61.864 60.000 5.56 0.00 36.29 1.98
690 703 2.305927 CCCATATCTAAACAGGGCGGAT 59.694 50.000 0.00 0.00 31.81 4.18
747 762 1.883275 ACAAAATCGCCGTCCATTTGA 59.117 42.857 11.34 0.00 35.52 2.69
753 768 1.705337 CGCCGTCCATTTGAATCGCT 61.705 55.000 0.00 0.00 0.00 4.93
759 774 3.546815 CGTCCATTTGAATCGCTCCATTC 60.547 47.826 0.00 0.00 33.90 2.67
768 783 0.037326 TCGCTCCATTCGAGTTGCTT 60.037 50.000 0.00 0.00 41.10 3.91
798 813 2.052237 GACAACAACACGCTGCCG 60.052 61.111 0.00 0.00 41.14 5.69
831 846 3.054802 CCCTCATAAAACCTCTGTGCTCT 60.055 47.826 0.00 0.00 0.00 4.09
871 886 1.426598 CCATATCCCCAGGCTCACATT 59.573 52.381 0.00 0.00 0.00 2.71
895 910 2.151202 CCACGTAGCACCACTCAAATT 58.849 47.619 0.00 0.00 0.00 1.82
941 956 1.761780 TTCCCTCCACCTTCCTCCCT 61.762 60.000 0.00 0.00 0.00 4.20
943 958 1.081092 CCTCCACCTTCCTCCCTCA 59.919 63.158 0.00 0.00 0.00 3.86
944 959 1.268283 CCTCCACCTTCCTCCCTCAC 61.268 65.000 0.00 0.00 0.00 3.51
996 1011 1.128188 AACCTCACCTCCCAGTCCAC 61.128 60.000 0.00 0.00 0.00 4.02
997 1012 2.650116 CCTCACCTCCCAGTCCACG 61.650 68.421 0.00 0.00 0.00 4.94
1082 1104 2.123640 CCTCCTCCTCCCGAGACC 60.124 72.222 0.00 0.00 41.63 3.85
1127 1167 4.899239 CTCCATGGCCGCCTCGAC 62.899 72.222 11.61 0.00 0.00 4.20
1461 1506 1.987770 CATCACAGCAAATTTCCACGC 59.012 47.619 0.00 0.00 0.00 5.34
1478 1528 1.674611 CGCCATCGACGACACTGAAC 61.675 60.000 0.00 0.00 38.10 3.18
1494 1544 1.136305 TGAACCTCGATTGATCCGACC 59.864 52.381 0.00 0.00 32.18 4.79
1498 1548 0.663688 CTCGATTGATCCGACCGACT 59.336 55.000 0.00 0.00 32.18 4.18
1509 1559 0.110147 CGACCGACTGACTGACTGAC 60.110 60.000 0.00 0.00 0.00 3.51
1510 1560 1.240256 GACCGACTGACTGACTGACT 58.760 55.000 0.00 0.00 0.00 3.41
1511 1561 0.955178 ACCGACTGACTGACTGACTG 59.045 55.000 0.00 0.00 0.00 3.51
1512 1562 1.239347 CCGACTGACTGACTGACTGA 58.761 55.000 0.00 0.00 0.00 3.41
1513 1563 1.068885 CCGACTGACTGACTGACTGAC 60.069 57.143 0.00 0.00 0.00 3.51
1514 1564 1.876799 CGACTGACTGACTGACTGACT 59.123 52.381 0.00 0.00 0.00 3.41
1515 1565 2.350293 CGACTGACTGACTGACTGACTG 60.350 54.545 0.00 0.00 0.00 3.51
1516 1566 2.881513 GACTGACTGACTGACTGACTGA 59.118 50.000 0.00 0.00 0.00 3.41
1522 1572 3.761218 ACTGACTGACTGACTGATCGATT 59.239 43.478 0.00 0.00 0.00 3.34
1524 1574 2.857152 GACTGACTGACTGATCGATTGC 59.143 50.000 0.00 0.00 0.00 3.56
1579 1629 4.600207 GGAGACCTGAAGCGGAAC 57.400 61.111 0.00 0.00 0.00 3.62
1582 1632 0.390472 GAGACCTGAAGCGGAACCTG 60.390 60.000 0.00 0.00 0.00 4.00
1660 1710 3.665675 GATCGCCAAGGCCGTCAGT 62.666 63.158 5.34 0.00 37.98 3.41
1690 1741 0.543277 TAAGAGCCCCATCTGCACAG 59.457 55.000 0.00 0.00 0.00 3.66
1691 1742 2.827642 GAGCCCCATCTGCACAGC 60.828 66.667 0.00 0.00 0.00 4.40
1692 1743 3.633609 GAGCCCCATCTGCACAGCA 62.634 63.158 0.00 0.00 36.92 4.41
1693 1744 3.446570 GCCCCATCTGCACAGCAC 61.447 66.667 0.00 0.00 33.79 4.40
1701 1752 3.568430 CCATCTGCACAGCACAATATCAT 59.432 43.478 0.00 0.00 33.79 2.45
1836 1887 2.856000 AGGCTTGGAGCAGGTGGT 60.856 61.111 2.04 0.00 44.75 4.16
1837 1888 2.116125 GGCTTGGAGCAGGTGGTT 59.884 61.111 2.04 0.00 44.75 3.67
1838 1889 1.973812 GGCTTGGAGCAGGTGGTTC 60.974 63.158 2.04 0.00 44.75 3.62
1852 1903 1.002544 GTGGTTCTCCCTCAAGGACAG 59.997 57.143 0.00 0.00 40.93 3.51
1872 1923 2.607750 AGGAGCTTCTGGCCGGAA 60.608 61.111 25.52 25.52 43.05 4.30
1878 1929 3.330267 GAGCTTCTGGCCGGAATAATAG 58.670 50.000 27.20 16.10 43.05 1.73
1929 1980 0.801067 GGAGCGACGATGTACCACAC 60.801 60.000 0.00 0.00 0.00 3.82
1975 2026 2.337170 CTGCCGGACGTGTACACA 59.663 61.111 24.98 3.45 0.00 3.72
1993 2044 3.454812 ACACACAGTTCAGAAAGGTAGGT 59.545 43.478 0.00 0.00 0.00 3.08
2012 2063 2.106166 GGTGCTCTCCATTCATCCTGAT 59.894 50.000 0.00 0.00 0.00 2.90
2020 2071 4.042884 TCCATTCATCCTGATTCCTCTGT 58.957 43.478 0.00 0.00 0.00 3.41
2030 2081 9.347240 CATCCTGATTCCTCTGTAAATTGTAAT 57.653 33.333 0.00 0.00 0.00 1.89
2031 2082 8.737168 TCCTGATTCCTCTGTAAATTGTAATG 57.263 34.615 0.00 0.00 0.00 1.90
2032 2083 7.775093 TCCTGATTCCTCTGTAAATTGTAATGG 59.225 37.037 0.00 0.00 0.00 3.16
2033 2084 7.557719 CCTGATTCCTCTGTAAATTGTAATGGT 59.442 37.037 0.00 0.00 0.00 3.55
2034 2085 9.613428 CTGATTCCTCTGTAAATTGTAATGGTA 57.387 33.333 0.00 0.00 0.00 3.25
2035 2086 9.967451 TGATTCCTCTGTAAATTGTAATGGTAA 57.033 29.630 0.00 0.00 0.00 2.85
2037 2088 8.801882 TTCCTCTGTAAATTGTAATGGTAAGG 57.198 34.615 0.00 0.00 0.00 2.69
2038 2089 7.924541 TCCTCTGTAAATTGTAATGGTAAGGT 58.075 34.615 0.00 0.00 0.00 3.50
2045 2103 3.443145 TGTAATGGTAAGGTTGGTGGG 57.557 47.619 0.00 0.00 0.00 4.61
2113 2171 4.361971 TCCTCGGTCCGGAGCTGT 62.362 66.667 29.53 0.00 32.57 4.40
2170 2228 4.925861 GGCCTGGATGAGCTCGGC 62.926 72.222 18.28 18.28 39.98 5.54
2206 2264 3.798758 ACTCTGGAGTCACTGGGC 58.201 61.111 0.00 0.00 36.92 5.36
2215 2273 2.176889 GAGTCACTGGGCCTAAGTGTA 58.823 52.381 27.56 17.12 44.42 2.90
2218 2276 1.274167 TCACTGGGCCTAAGTGTAACG 59.726 52.381 27.56 11.17 45.86 3.18
2244 2302 4.395231 GGCAGGTTCAGTTAACTGTATTCC 59.605 45.833 29.83 24.76 44.12 3.01
2247 2305 5.995282 CAGGTTCAGTTAACTGTATTCCACA 59.005 40.000 29.83 9.92 44.12 4.17
2269 2327 2.990066 CTGATCTTCAGTACCCCCAC 57.010 55.000 0.00 0.00 39.58 4.61
2270 2328 2.472029 CTGATCTTCAGTACCCCCACT 58.528 52.381 0.00 0.00 39.58 4.00
2271 2329 2.169352 CTGATCTTCAGTACCCCCACTG 59.831 54.545 0.00 0.00 46.04 3.66
2272 2330 2.188817 GATCTTCAGTACCCCCACTGT 58.811 52.381 3.41 0.00 45.11 3.55
2274 2332 0.324943 CTTCAGTACCCCCACTGTGG 59.675 60.000 20.01 20.01 45.11 4.17
2281 2339 1.378762 CCCCCACTGTGGTACCTTG 59.621 63.158 24.32 8.62 35.17 3.61
2282 2340 1.423794 CCCCCACTGTGGTACCTTGT 61.424 60.000 24.32 6.33 35.17 3.16
2309 2420 8.964476 TGGATATGGTTCTAGAATTTCACTTC 57.036 34.615 8.75 8.13 0.00 3.01
2315 2426 6.486657 TGGTTCTAGAATTTCACTTCCAGTTG 59.513 38.462 8.75 0.00 0.00 3.16
2373 2484 1.693083 GAATGCGTTTCGTCGGAGGG 61.693 60.000 0.00 0.00 34.35 4.30
2400 2511 1.079057 GGCTCTCGGAAGGGTTCAC 60.079 63.158 0.00 0.00 0.00 3.18
2499 2610 1.979155 GTTCTCCCCTTGGCTTGCC 60.979 63.158 4.43 4.43 0.00 4.52
2547 2658 5.584649 TGTTTGCGAAGAGGTGGATATTTAG 59.415 40.000 0.00 0.00 0.00 1.85
2552 2664 4.209288 CGAAGAGGTGGATATTTAGCGTTG 59.791 45.833 0.00 0.00 0.00 4.10
2558 2670 2.863740 TGGATATTTAGCGTTGTCTGCG 59.136 45.455 0.00 0.00 37.44 5.18
2573 2685 1.137675 TCTGCGCACATTATCAGCTCT 59.862 47.619 5.66 0.00 0.00 4.09
2581 2693 5.358922 GCACATTATCAGCTCTTTCTCTCT 58.641 41.667 0.00 0.00 0.00 3.10
2594 2706 6.402011 GCTCTTTCTCTCTTGTGCTAAATGTC 60.402 42.308 0.00 0.00 0.00 3.06
2602 2714 5.316167 TCTTGTGCTAAATGTCTGGTGATT 58.684 37.500 0.00 0.00 0.00 2.57
2605 2717 7.611467 TCTTGTGCTAAATGTCTGGTGATTATT 59.389 33.333 0.00 0.00 0.00 1.40
2630 3218 5.695816 CAGGTTAAGAGATATGAGAAGCAGC 59.304 44.000 0.00 0.00 0.00 5.25
2631 3219 5.365025 AGGTTAAGAGATATGAGAAGCAGCA 59.635 40.000 0.00 0.00 0.00 4.41
2635 3223 4.695396 AGAGATATGAGAAGCAGCAAGTG 58.305 43.478 0.00 0.00 0.00 3.16
2672 3260 5.660460 CATACTGGTTAGTCAGTGTGCATA 58.340 41.667 8.36 0.00 45.13 3.14
2724 3313 7.792374 TTGTAAGGAATGCTCAGATTCATAC 57.208 36.000 0.00 0.00 34.50 2.39
2725 3314 7.129457 TGTAAGGAATGCTCAGATTCATACT 57.871 36.000 0.00 0.00 34.50 2.12
2738 3327 2.238084 TCATACTGTCTGGTCTGCCT 57.762 50.000 0.00 0.00 35.27 4.75
2741 3330 4.093743 TCATACTGTCTGGTCTGCCTTTA 58.906 43.478 0.00 0.00 35.27 1.85
2742 3331 2.841442 ACTGTCTGGTCTGCCTTTAC 57.159 50.000 0.00 0.00 35.27 2.01
2743 3332 2.330216 ACTGTCTGGTCTGCCTTTACT 58.670 47.619 0.00 0.00 35.27 2.24
2744 3333 2.037772 ACTGTCTGGTCTGCCTTTACTG 59.962 50.000 0.00 0.00 35.27 2.74
2745 3334 1.347707 TGTCTGGTCTGCCTTTACTGG 59.652 52.381 0.00 0.00 35.27 4.00
2756 3345 1.614051 CCTTTACTGGCTGACATGGCA 60.614 52.381 0.00 0.00 40.25 4.92
2773 3362 2.158842 TGGCAATGGTTTCAGGGTTTTG 60.159 45.455 0.00 0.00 0.00 2.44
2865 3454 5.130477 TGGGTAAGGATACAATTGTCTCTCC 59.870 44.000 15.85 18.33 41.41 3.71
2866 3455 5.454897 GGGTAAGGATACAATTGTCTCTCCC 60.455 48.000 15.85 18.35 41.41 4.30
2867 3456 4.779993 AAGGATACAATTGTCTCTCCCC 57.220 45.455 15.85 8.29 41.41 4.81
2868 3457 4.014273 AGGATACAATTGTCTCTCCCCT 57.986 45.455 15.85 10.32 41.41 4.79
2869 3458 3.970640 AGGATACAATTGTCTCTCCCCTC 59.029 47.826 15.85 1.28 41.41 4.30
2875 3464 1.186200 TTGTCTCTCCCCTCATCGTG 58.814 55.000 0.00 0.00 0.00 4.35
2895 3484 6.820335 TCGTGAGGAAATGTATCATTCTGAT 58.180 36.000 0.00 0.00 40.72 2.90
2905 3494 9.798994 AAATGTATCATTCTGATTTCTTGCTTC 57.201 29.630 0.00 0.00 38.26 3.86
2933 3543 7.097047 CCAGTTTATTACGAAAATAATGCGCAG 60.097 37.037 18.32 1.10 0.00 5.18
2968 3578 1.455383 AAAAGGTCACGGCCAGCAAG 61.455 55.000 2.24 0.00 0.00 4.01
3036 3646 1.457346 GTCCAAGTGGAGCCAAGATG 58.543 55.000 0.00 0.00 46.49 2.90
3088 3698 4.602259 CGGGTACGGCATCGGCAT 62.602 66.667 0.00 0.00 43.71 4.40
3115 3725 3.692791 AGTTGTTCCGTCTTTTTGCTC 57.307 42.857 0.00 0.00 0.00 4.26
3118 3728 2.218603 TGTTCCGTCTTTTTGCTCCTC 58.781 47.619 0.00 0.00 0.00 3.71
3142 3752 5.189180 GCCATACCTTCTGAGTTCTGAATT 58.811 41.667 0.00 0.00 34.17 2.17
3147 3757 5.449553 ACCTTCTGAGTTCTGAATTTGGTT 58.550 37.500 0.00 0.00 30.99 3.67
3156 3766 7.286546 TGAGTTCTGAATTTGGTTATGGTGAAA 59.713 33.333 0.00 0.00 0.00 2.69
3228 3838 3.948719 ATGTCCAACCGTGGCCGT 61.949 61.111 0.00 0.00 45.54 5.68
3299 3909 4.183865 GGTTAAATGCAGGCCATCTTTTC 58.816 43.478 5.01 0.00 31.43 2.29
3372 3982 1.111116 TCCGGGACATGGGTATCGAC 61.111 60.000 0.00 0.00 0.00 4.20
3423 4033 1.140852 TGCCTTCTGGATTATGACCCG 59.859 52.381 0.00 0.00 34.57 5.28
3429 4039 1.417890 CTGGATTATGACCCGGCTTCT 59.582 52.381 0.00 0.00 0.00 2.85
3475 4085 1.334869 CAGGTCAGTGTTTCCTTGTGC 59.665 52.381 0.00 0.00 0.00 4.57
3477 4087 0.668535 GTCAGTGTTTCCTTGTGCCC 59.331 55.000 0.00 0.00 0.00 5.36
3484 4094 1.548719 GTTTCCTTGTGCCCCATTACC 59.451 52.381 0.00 0.00 0.00 2.85
3492 4102 2.042297 TGTGCCCCATTACCATCTTTGA 59.958 45.455 0.00 0.00 0.00 2.69
3495 4105 4.278419 GTGCCCCATTACCATCTTTGATAC 59.722 45.833 0.00 0.00 0.00 2.24
3500 4113 6.833416 CCCCATTACCATCTTTGATACTTCAA 59.167 38.462 0.00 0.00 40.09 2.69
3515 4128 9.698309 TTGATACTTCAAACTAGATAGCATAGC 57.302 33.333 0.00 0.00 38.90 2.97
3516 4129 8.860088 TGATACTTCAAACTAGATAGCATAGCA 58.140 33.333 0.00 0.00 0.00 3.49
3517 4130 9.868277 GATACTTCAAACTAGATAGCATAGCAT 57.132 33.333 0.00 0.00 0.00 3.79
3518 4131 7.959689 ACTTCAAACTAGATAGCATAGCATG 57.040 36.000 0.00 0.00 0.00 4.06
3519 4132 6.933521 ACTTCAAACTAGATAGCATAGCATGG 59.066 38.462 0.00 0.00 0.00 3.66
3520 4133 6.425210 TCAAACTAGATAGCATAGCATGGT 57.575 37.500 1.62 1.62 44.27 3.55
3521 4134 6.830912 TCAAACTAGATAGCATAGCATGGTT 58.169 36.000 1.12 0.00 41.83 3.67
3522 4135 6.931281 TCAAACTAGATAGCATAGCATGGTTC 59.069 38.462 1.12 0.00 41.83 3.62
3523 4136 6.425210 AACTAGATAGCATAGCATGGTTCA 57.575 37.500 1.12 0.00 41.83 3.18
3524 4137 6.425210 ACTAGATAGCATAGCATGGTTCAA 57.575 37.500 1.12 0.00 41.83 2.69
3525 4138 6.462500 ACTAGATAGCATAGCATGGTTCAAG 58.538 40.000 1.12 0.00 41.83 3.02
3526 4139 4.070716 AGATAGCATAGCATGGTTCAAGC 58.929 43.478 1.12 2.58 41.83 4.01
3527 4140 2.133281 AGCATAGCATGGTTCAAGCA 57.867 45.000 1.12 0.00 37.84 3.91
3528 4141 1.747355 AGCATAGCATGGTTCAAGCAC 59.253 47.619 1.12 0.00 37.84 4.40
3529 4142 1.473677 GCATAGCATGGTTCAAGCACA 59.526 47.619 1.12 0.00 29.93 4.57
3530 4143 2.100252 GCATAGCATGGTTCAAGCACAT 59.900 45.455 1.12 0.00 29.93 3.21
3531 4144 3.316029 GCATAGCATGGTTCAAGCACATA 59.684 43.478 1.12 0.00 29.93 2.29
3532 4145 4.202040 GCATAGCATGGTTCAAGCACATAA 60.202 41.667 1.12 0.00 29.93 1.90
3533 4146 5.508489 GCATAGCATGGTTCAAGCACATAAT 60.508 40.000 1.12 0.00 29.93 1.28
3534 4147 4.380841 AGCATGGTTCAAGCACATAATG 57.619 40.909 0.00 0.00 29.93 1.90
3560 4173 7.012327 GCAAAATTAGGAGCTCATGTACACATA 59.988 37.037 17.19 0.00 34.26 2.29
3561 4174 8.892723 CAAAATTAGGAGCTCATGTACACATAA 58.107 33.333 17.19 0.00 34.26 1.90
3563 4176 9.632638 AAATTAGGAGCTCATGTACACATAAAT 57.367 29.630 17.19 0.00 34.26 1.40
3564 4177 9.632638 AATTAGGAGCTCATGTACACATAAATT 57.367 29.630 17.19 5.18 34.26 1.82
3565 4178 6.932356 AGGAGCTCATGTACACATAAATTG 57.068 37.500 17.19 0.00 34.26 2.32
3566 4179 5.297776 AGGAGCTCATGTACACATAAATTGC 59.702 40.000 17.19 0.00 34.26 3.56
3567 4180 5.297776 GGAGCTCATGTACACATAAATTGCT 59.702 40.000 17.19 0.00 34.26 3.91
3568 4181 6.127810 AGCTCATGTACACATAAATTGCTG 57.872 37.500 0.00 0.00 34.26 4.41
3569 4182 5.882000 AGCTCATGTACACATAAATTGCTGA 59.118 36.000 0.00 0.00 34.26 4.26
3570 4183 6.037940 AGCTCATGTACACATAAATTGCTGAG 59.962 38.462 0.00 4.57 34.26 3.35
3571 4184 6.037500 GCTCATGTACACATAAATTGCTGAGA 59.962 38.462 16.17 0.00 34.26 3.27
3573 4186 9.264719 CTCATGTACACATAAATTGCTGAGATA 57.735 33.333 0.00 0.00 34.26 1.98
3576 4189 9.618890 ATGTACACATAAATTGCTGAGATACTT 57.381 29.630 0.00 0.00 34.26 2.24
3577 4190 8.882736 TGTACACATAAATTGCTGAGATACTTG 58.117 33.333 0.00 0.00 0.00 3.16
3580 4193 8.454106 ACACATAAATTGCTGAGATACTTGAAC 58.546 33.333 0.00 0.00 0.00 3.18
3581 4194 8.671921 CACATAAATTGCTGAGATACTTGAACT 58.328 33.333 0.00 0.00 0.00 3.01
3582 4195 8.671921 ACATAAATTGCTGAGATACTTGAACTG 58.328 33.333 0.00 0.00 0.00 3.16
3583 4196 8.886719 CATAAATTGCTGAGATACTTGAACTGA 58.113 33.333 0.00 0.00 0.00 3.41
3584 4197 6.734104 AATTGCTGAGATACTTGAACTGAC 57.266 37.500 0.00 0.00 0.00 3.51
3585 4198 5.474578 TTGCTGAGATACTTGAACTGACT 57.525 39.130 0.00 0.00 0.00 3.41
3586 4199 4.814147 TGCTGAGATACTTGAACTGACTG 58.186 43.478 0.00 0.00 0.00 3.51
3587 4200 4.524328 TGCTGAGATACTTGAACTGACTGA 59.476 41.667 0.00 0.00 0.00 3.41
3588 4201 5.011023 TGCTGAGATACTTGAACTGACTGAA 59.989 40.000 0.00 0.00 0.00 3.02
3589 4202 5.347364 GCTGAGATACTTGAACTGACTGAAC 59.653 44.000 0.00 0.00 0.00 3.18
3590 4203 6.656632 TGAGATACTTGAACTGACTGAACT 57.343 37.500 0.00 0.00 0.00 3.01
3591 4204 6.450545 TGAGATACTTGAACTGACTGAACTG 58.549 40.000 0.00 0.00 0.00 3.16
3592 4205 5.233988 AGATACTTGAACTGACTGAACTGC 58.766 41.667 0.00 0.00 0.00 4.40
3593 4206 3.266510 ACTTGAACTGACTGAACTGCA 57.733 42.857 0.00 0.00 0.00 4.41
3601 4214 3.978272 CTGAACTGCAGCTGGACC 58.022 61.111 17.12 3.23 37.90 4.46
3602 4215 1.673665 CTGAACTGCAGCTGGACCC 60.674 63.158 17.12 2.85 37.90 4.46
3635 4248 1.936547 GGCAATGATCCACGAGAAGAC 59.063 52.381 0.00 0.00 0.00 3.01
3644 4257 3.087031 TCCACGAGAAGACCGATACTTT 58.913 45.455 0.00 0.00 0.00 2.66
3650 4263 5.530171 ACGAGAAGACCGATACTTTAGCATA 59.470 40.000 0.00 0.00 0.00 3.14
3707 4320 9.743057 CACCAACATCTGAATACTTGTTTTTAA 57.257 29.630 0.00 0.00 30.23 1.52
3737 4350 5.128827 TGAACTCCAGTCAATCATACTACCC 59.871 44.000 0.00 0.00 0.00 3.69
3738 4351 4.620723 ACTCCAGTCAATCATACTACCCA 58.379 43.478 0.00 0.00 0.00 4.51
3745 4358 5.944007 AGTCAATCATACTACCCAAAACCAC 59.056 40.000 0.00 0.00 0.00 4.16
3748 4361 4.938575 TCATACTACCCAAAACCACCAT 57.061 40.909 0.00 0.00 0.00 3.55
3749 4362 6.584471 ATCATACTACCCAAAACCACCATA 57.416 37.500 0.00 0.00 0.00 2.74
3750 4363 5.996644 TCATACTACCCAAAACCACCATAG 58.003 41.667 0.00 0.00 0.00 2.23
3751 4364 3.081710 ACTACCCAAAACCACCATAGC 57.918 47.619 0.00 0.00 0.00 2.97
3752 4365 2.647802 ACTACCCAAAACCACCATAGCT 59.352 45.455 0.00 0.00 0.00 3.32
3753 4366 3.847780 ACTACCCAAAACCACCATAGCTA 59.152 43.478 0.00 0.00 0.00 3.32
3754 4367 3.366052 ACCCAAAACCACCATAGCTAG 57.634 47.619 0.00 0.00 0.00 3.42
3755 4368 2.024414 CCCAAAACCACCATAGCTAGC 58.976 52.381 6.62 6.62 0.00 3.42
3756 4369 1.670811 CCAAAACCACCATAGCTAGCG 59.329 52.381 9.55 0.00 0.00 4.26
3757 4370 2.356135 CAAAACCACCATAGCTAGCGT 58.644 47.619 9.55 0.00 0.00 5.07
3760 4373 4.417426 AAACCACCATAGCTAGCGTATT 57.583 40.909 9.55 0.00 0.00 1.89
3761 4374 3.386768 ACCACCATAGCTAGCGTATTG 57.613 47.619 9.55 5.73 0.00 1.90
3766 4379 3.138304 CCATAGCTAGCGTATTGGCAAA 58.862 45.455 9.55 0.00 34.64 3.68
3774 4387 2.121786 GCGTATTGGCAAATGAGCATG 58.878 47.619 3.01 0.00 35.83 4.06
3776 4389 2.099592 CGTATTGGCAAATGAGCATGGT 59.900 45.455 3.01 0.00 35.83 3.55
3780 4393 0.174162 GGCAAATGAGCATGGTGACC 59.826 55.000 0.00 0.00 35.83 4.02
3789 4402 3.072330 TGAGCATGGTGACCTAAGAACAA 59.928 43.478 0.00 0.00 0.00 2.83
3791 4404 2.488153 GCATGGTGACCTAAGAACAACC 59.512 50.000 2.11 0.00 0.00 3.77
3792 4405 3.750371 CATGGTGACCTAAGAACAACCA 58.250 45.455 2.11 0.00 0.00 3.67
3793 4406 4.335416 CATGGTGACCTAAGAACAACCAT 58.665 43.478 2.11 0.00 37.22 3.55
3794 4407 3.750371 TGGTGACCTAAGAACAACCATG 58.250 45.455 2.11 0.00 0.00 3.66
3797 4410 4.825085 GGTGACCTAAGAACAACCATGAAA 59.175 41.667 0.00 0.00 0.00 2.69
3798 4411 5.048713 GGTGACCTAAGAACAACCATGAAAG 60.049 44.000 0.00 0.00 0.00 2.62
3799 4412 5.531287 GTGACCTAAGAACAACCATGAAAGT 59.469 40.000 0.00 0.00 0.00 2.66
3800 4413 5.530915 TGACCTAAGAACAACCATGAAAGTG 59.469 40.000 0.00 0.00 0.00 3.16
3801 4414 5.445964 ACCTAAGAACAACCATGAAAGTGT 58.554 37.500 0.00 0.00 0.00 3.55
3802 4415 6.597562 ACCTAAGAACAACCATGAAAGTGTA 58.402 36.000 0.00 0.00 0.00 2.90
3803 4416 6.710744 ACCTAAGAACAACCATGAAAGTGTAG 59.289 38.462 0.00 0.00 0.00 2.74
3804 4417 6.149474 CCTAAGAACAACCATGAAAGTGTAGG 59.851 42.308 0.00 0.00 0.00 3.18
3807 4424 5.891551 AGAACAACCATGAAAGTGTAGGTTT 59.108 36.000 0.00 0.00 40.39 3.27
3829 4446 3.216800 TGAGCATCAATGTATTGCCTCC 58.783 45.455 0.00 0.00 45.97 4.30
3835 4458 4.164843 TCAATGTATTGCCTCCTAACCC 57.835 45.455 0.00 0.00 37.68 4.11
3842 4465 4.984146 ATTGCCTCCTAACCCTAAGATC 57.016 45.455 0.00 0.00 0.00 2.75
3843 4466 3.708236 TGCCTCCTAACCCTAAGATCT 57.292 47.619 0.00 0.00 0.00 2.75
3845 4468 5.152306 TGCCTCCTAACCCTAAGATCTTA 57.848 43.478 14.42 14.42 0.00 2.10
3848 4471 7.310634 TGCCTCCTAACCCTAAGATCTTAATA 58.689 38.462 15.85 6.69 0.00 0.98
3857 4480 7.902087 ACCCTAAGATCTTAATATCAGAGCAC 58.098 38.462 15.85 0.00 0.00 4.40
3862 4485 4.322080 TCTTAATATCAGAGCACGGTGG 57.678 45.455 10.60 0.00 0.00 4.61
3864 4487 4.161565 TCTTAATATCAGAGCACGGTGGTT 59.838 41.667 14.71 0.76 0.00 3.67
3866 4489 2.851263 TATCAGAGCACGGTGGTTTT 57.149 45.000 14.71 3.49 0.00 2.43
3867 4490 1.981256 ATCAGAGCACGGTGGTTTTT 58.019 45.000 14.71 0.95 0.00 1.94
3893 4520 7.811117 ACTACTCATACCTTAGTCTGATCAC 57.189 40.000 0.00 0.00 29.64 3.06
3922 4549 0.895530 TTCCTCTGTAGGCCAAGACG 59.104 55.000 5.01 0.00 43.31 4.18
3934 4561 1.798079 GCCAAGACGTACGATCCTGAC 60.798 57.143 24.41 4.79 0.00 3.51
3938 4565 1.985447 GACGTACGATCCTGACGGCA 61.985 60.000 24.41 0.00 44.14 5.69
3956 4583 1.332904 GCAAATATGTCGCGTACTGGC 60.333 52.381 5.77 0.00 0.00 4.85
3961 4588 2.277756 GTCGCGTACTGGCTACCG 60.278 66.667 5.77 0.00 0.00 4.02
3991 4618 1.899814 TCGCTAGCAAAGGAAAGGAGA 59.100 47.619 16.45 0.00 0.00 3.71
4003 4630 2.163509 GAAAGGAGAAACTTCCCAGGC 58.836 52.381 0.00 0.00 38.02 4.85
4006 4633 1.003233 GAGAAACTTCCCAGGCGCT 60.003 57.895 7.64 0.00 0.00 5.92
4036 4663 1.374758 GCAGGTCGTCCCACTGAAG 60.375 63.158 0.00 0.00 34.21 3.02
4096 4723 3.873805 GCAGACAAGGCCAAAGAAC 57.126 52.632 5.01 0.00 0.00 3.01
4114 4741 9.364989 CCAAAGAACATTTACAGAAGACAAAAA 57.635 29.630 0.00 0.00 0.00 1.94
4163 4794 4.384978 CCATCAATCAAGAGTCAGTGGGAT 60.385 45.833 0.00 0.00 0.00 3.85
4166 4797 7.256439 CCATCAATCAAGAGTCAGTGGGATATA 60.256 40.741 0.00 0.00 0.00 0.86
4168 4799 7.069344 TCAATCAAGAGTCAGTGGGATATAGA 58.931 38.462 0.00 0.00 0.00 1.98
4181 4812 7.172190 CAGTGGGATATAGAGCAAATGTTACAG 59.828 40.741 0.00 0.00 0.00 2.74
4182 4813 5.997746 TGGGATATAGAGCAAATGTTACAGC 59.002 40.000 0.00 0.00 0.00 4.40
4184 4815 6.486657 GGGATATAGAGCAAATGTTACAGCAA 59.513 38.462 0.00 0.00 0.00 3.91
4186 4817 8.233190 GGATATAGAGCAAATGTTACAGCAATC 58.767 37.037 0.00 0.00 0.00 2.67
4191 4822 3.364621 GCAAATGTTACAGCAATCGGTTG 59.635 43.478 3.38 3.38 38.39 3.77
4201 4832 3.060339 CAGCAATCGGTTGAAAAGCAAAC 60.060 43.478 13.85 0.00 46.59 2.93
4213 4844 2.977405 AAGCAAACGAGATGTGAAGC 57.023 45.000 0.00 0.00 0.00 3.86
4218 4849 3.666374 GCAAACGAGATGTGAAGCTTCAG 60.666 47.826 29.13 18.05 37.98 3.02
4265 4896 2.435805 AGTGACAAGGTGAGCTCAGAAA 59.564 45.455 18.89 0.00 0.00 2.52
4295 4979 3.827008 TGATCCTGATCTTGCTGTACC 57.173 47.619 8.50 0.00 38.60 3.34
4319 5003 1.270550 CAACAGTCAATGGGTTCCAGC 59.729 52.381 0.00 0.00 36.75 4.85
4323 5010 3.245229 ACAGTCAATGGGTTCCAGCAATA 60.245 43.478 0.00 0.00 36.75 1.90
4325 5012 3.763897 AGTCAATGGGTTCCAGCAATAAC 59.236 43.478 0.00 0.00 36.75 1.89
4332 5019 2.147958 GTTCCAGCAATAACCGTGACA 58.852 47.619 0.00 0.00 0.00 3.58
4355 5042 4.871993 AAAATCAGCTCATAACAGCGAG 57.128 40.909 0.00 0.00 44.82 5.03
4380 5067 3.753272 ACACATCCAGCACAGATTAACAC 59.247 43.478 0.00 0.00 0.00 3.32
4389 5076 4.094887 AGCACAGATTAACACGGCAATTAG 59.905 41.667 0.00 0.00 0.00 1.73
4391 5078 5.391523 GCACAGATTAACACGGCAATTAGAA 60.392 40.000 0.00 0.00 0.00 2.10
4392 5079 6.250819 CACAGATTAACACGGCAATTAGAAG 58.749 40.000 0.00 0.00 0.00 2.85
4432 5123 8.764287 GTCATTTCCATTAAACCTGAACAAAAG 58.236 33.333 0.00 0.00 0.00 2.27
4547 5239 2.030007 ACCGATGACATGCCACAAAAAG 60.030 45.455 0.00 0.00 0.00 2.27
4654 5347 8.886719 TCATGAAACTGATAAATGTAGCTTCAG 58.113 33.333 7.60 7.60 39.70 3.02
4665 5358 4.035612 TGTAGCTTCAGTCCTCTGTAGT 57.964 45.455 0.00 0.00 39.94 2.73
4673 5366 3.054287 TCAGTCCTCTGTAGTAGACCCTG 60.054 52.174 0.00 0.00 41.91 4.45
4726 5419 2.143925 GTTGGTATAGGAATGCCGAGC 58.856 52.381 0.00 0.00 40.57 5.03
4758 5451 2.650608 GCTTTGTACTTTCCAAGCACG 58.349 47.619 0.00 0.00 0.00 5.34
4852 5545 3.820467 CCTGCAGATTGTCAAACCAACTA 59.180 43.478 17.39 0.00 0.00 2.24
4927 5620 5.070001 AGCTGTGCTAACAATTTACTCCAA 58.930 37.500 0.00 0.00 36.99 3.53
4995 5712 3.365264 GCAAGCACATTTCTCGAACATCA 60.365 43.478 0.00 0.00 0.00 3.07
4996 5713 4.400845 CAAGCACATTTCTCGAACATCAG 58.599 43.478 0.00 0.00 0.00 2.90
4997 5714 3.930336 AGCACATTTCTCGAACATCAGA 58.070 40.909 0.00 0.00 0.00 3.27
4998 5715 3.931468 AGCACATTTCTCGAACATCAGAG 59.069 43.478 0.00 0.00 35.91 3.35
4999 5716 3.928992 GCACATTTCTCGAACATCAGAGA 59.071 43.478 0.00 0.00 41.26 3.10
5000 5717 4.032672 GCACATTTCTCGAACATCAGAGAG 59.967 45.833 0.00 0.00 43.42 3.20
5006 5723 4.441792 TCTCGAACATCAGAGAGAGAGAG 58.558 47.826 0.00 0.00 38.46 3.20
5007 5724 4.161377 TCTCGAACATCAGAGAGAGAGAGA 59.839 45.833 0.00 0.00 38.46 3.10
5020 5737 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
5097 5814 1.254954 ACTCCCTGTACGGTCTGAAC 58.745 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.943718 CACCCAGGTAGTATCCTTTGTTTTAA 59.056 38.462 0.00 0.00 35.37 1.52
31 32 4.600111 TCACCCAGGTAGTATCCTTTGTTT 59.400 41.667 0.00 0.00 35.37 2.83
32 33 4.019591 GTCACCCAGGTAGTATCCTTTGTT 60.020 45.833 0.00 0.00 35.37 2.83
76 77 4.658063 CAGGGTTGGGTATTGTCTTACAA 58.342 43.478 0.00 0.00 42.95 2.41
77 78 3.560453 GCAGGGTTGGGTATTGTCTTACA 60.560 47.826 0.00 0.00 0.00 2.41
78 79 3.014623 GCAGGGTTGGGTATTGTCTTAC 58.985 50.000 0.00 0.00 0.00 2.34
99 107 4.479786 AATCTTTTCCTCTTCTCTCCGG 57.520 45.455 0.00 0.00 0.00 5.14
174 182 4.812476 TGCCCCGTCGAGATTGCG 62.812 66.667 0.00 0.00 0.00 4.85
185 193 0.673644 GGATACCGAATGATGCCCCG 60.674 60.000 0.00 0.00 0.00 5.73
236 244 2.644299 TCCCACAATCAGTCATCACCTT 59.356 45.455 0.00 0.00 0.00 3.50
255 263 8.479313 TTCTACGATCATATTGTGCATAATCC 57.521 34.615 12.36 0.00 0.00 3.01
304 312 5.065914 CCCTGAAACTGAAACTCTTGATCA 58.934 41.667 0.00 0.00 0.00 2.92
312 320 4.503714 TTCTCACCCTGAAACTGAAACT 57.496 40.909 0.00 0.00 0.00 2.66
344 352 2.366393 TTGCCGCTCCTCCATGCTA 61.366 57.895 0.00 0.00 0.00 3.49
366 374 8.817100 CATGATGAAATTGGATGAATTGTTCAG 58.183 33.333 0.00 0.00 43.98 3.02
373 381 6.929049 GCATGTCATGATGAAATTGGATGAAT 59.071 34.615 17.24 0.00 0.00 2.57
401 409 1.686355 TGCACGTGAGTTTCCCAATT 58.314 45.000 22.23 0.00 46.40 2.32
453 461 9.337396 GATACATCTATTGGTTACCAACATGAA 57.663 33.333 26.31 11.93 46.95 2.57
482 490 9.469807 TCACATAGTTTTGCAAACGAATAAAAT 57.530 25.926 12.39 0.00 0.00 1.82
522 530 4.530161 AGCATGGTTTTACAAGCCCAATAA 59.470 37.500 0.00 0.00 35.81 1.40
527 535 4.736126 AATAGCATGGTTTTACAAGCCC 57.264 40.909 1.12 0.00 35.81 5.19
540 548 6.842163 AGTTTGAACCGAGTAAAATAGCATG 58.158 36.000 0.00 0.00 0.00 4.06
543 551 7.971455 ACATAGTTTGAACCGAGTAAAATAGC 58.029 34.615 0.00 0.00 0.00 2.97
552 560 8.029642 AGTCAAATAACATAGTTTGAACCGAG 57.970 34.615 2.50 0.00 43.56 4.63
593 601 6.738453 GCCGCCCTATTTTACATTGATGAATT 60.738 38.462 0.00 0.00 0.00 2.17
664 672 2.704065 CCCTGTTTAGATATGGGTCGGT 59.296 50.000 0.00 0.00 33.49 4.69
753 768 6.627395 TTTTCTTAAAGCAACTCGAATGGA 57.373 33.333 0.62 0.00 0.00 3.41
759 774 7.077605 TGTCATCATTTTCTTAAAGCAACTCG 58.922 34.615 0.00 0.00 0.00 4.18
768 783 6.416455 GCGTGTTGTTGTCATCATTTTCTTAA 59.584 34.615 0.00 0.00 0.00 1.85
819 834 3.325753 GGGCCAGAGCACAGAGGT 61.326 66.667 4.39 0.00 44.19 3.85
831 846 1.133513 GGTGATGGATAATGTGGGCCA 60.134 52.381 0.00 0.00 34.45 5.36
871 886 0.530744 GAGTGGTGCTACGTGGATGA 59.469 55.000 1.81 0.00 0.00 2.92
911 926 2.042843 GAGGGAAGAGCGGGGAGA 60.043 66.667 0.00 0.00 0.00 3.71
941 956 1.497309 GGTGGGTGGAAGATGGGTGA 61.497 60.000 0.00 0.00 0.00 4.02
943 958 2.238701 GGGTGGGTGGAAGATGGGT 61.239 63.158 0.00 0.00 0.00 4.51
944 959 2.683475 GGGTGGGTGGAAGATGGG 59.317 66.667 0.00 0.00 0.00 4.00
996 1011 1.586154 GGTGGTGGTGGAGCATTTCG 61.586 60.000 0.00 0.00 33.73 3.46
997 1012 0.251341 AGGTGGTGGTGGAGCATTTC 60.251 55.000 0.00 0.00 33.73 2.17
1062 1084 1.619975 TCTCGGGAGGAGGAGGAGT 60.620 63.158 0.00 0.00 43.34 3.85
1094 1116 4.841617 AGATGAGGGCGCGGAGGA 62.842 66.667 8.83 0.00 0.00 3.71
1108 1130 3.933722 CGAGGCGGCCATGGAGAT 61.934 66.667 23.09 0.00 0.00 2.75
1355 1395 1.077930 CAGTAGACGGGGAGGACGA 60.078 63.158 0.00 0.00 34.93 4.20
1443 1488 0.313672 GGCGTGGAAATTTGCTGTGA 59.686 50.000 11.22 0.00 0.00 3.58
1461 1506 0.243907 AGGTTCAGTGTCGTCGATGG 59.756 55.000 4.48 0.00 0.00 3.51
1478 1528 0.317938 GTCGGTCGGATCAATCGAGG 60.318 60.000 3.21 0.00 37.31 4.63
1494 1544 1.876799 AGTCAGTCAGTCAGTCAGTCG 59.123 52.381 0.00 0.00 0.00 4.18
1498 1548 2.485814 CGATCAGTCAGTCAGTCAGTCA 59.514 50.000 0.00 0.00 0.00 3.41
1509 1559 1.593469 CTGCAGCAATCGATCAGTCAG 59.407 52.381 0.00 0.00 0.00 3.51
1510 1560 1.648504 CTGCAGCAATCGATCAGTCA 58.351 50.000 0.00 0.00 0.00 3.41
1511 1561 0.304098 GCTGCAGCAATCGATCAGTC 59.696 55.000 33.36 0.00 41.59 3.51
1512 1562 2.391469 GCTGCAGCAATCGATCAGT 58.609 52.632 33.36 0.00 41.59 3.41
1524 1574 4.189188 GCGCCCTCAATGCTGCAG 62.189 66.667 10.11 10.11 0.00 4.41
1575 1625 3.793144 CGCGCTTCTGCAGGTTCC 61.793 66.667 15.13 0.00 39.64 3.62
1624 1674 0.614697 TCGCAGGGAGGATGTCTTCA 60.615 55.000 0.00 0.00 0.00 3.02
1660 1710 0.250295 GGGCTCTTACTGTGTGTGCA 60.250 55.000 9.70 0.00 0.00 4.57
1675 1725 3.654143 TGCTGTGCAGATGGGGCT 61.654 61.111 3.02 0.00 33.32 5.19
1676 1726 3.446570 GTGCTGTGCAGATGGGGC 61.447 66.667 3.02 0.00 40.08 5.80
1677 1727 0.968901 ATTGTGCTGTGCAGATGGGG 60.969 55.000 3.02 0.00 40.08 4.96
1690 1741 3.372206 GCTCGGTGGATATGATATTGTGC 59.628 47.826 0.00 0.00 0.00 4.57
1691 1742 3.935203 GGCTCGGTGGATATGATATTGTG 59.065 47.826 0.00 0.00 0.00 3.33
1692 1743 3.368427 CGGCTCGGTGGATATGATATTGT 60.368 47.826 0.00 0.00 0.00 2.71
1693 1744 3.190079 CGGCTCGGTGGATATGATATTG 58.810 50.000 0.00 0.00 0.00 1.90
1852 1903 4.168291 CGGCCAGAAGCTCCTCCC 62.168 72.222 2.24 0.00 43.05 4.30
1929 1980 2.412112 GGAACGGGAGATCGTCGG 59.588 66.667 9.43 3.29 43.07 4.79
1975 2026 2.706190 AGCACCTACCTTTCTGAACTGT 59.294 45.455 0.00 0.00 0.00 3.55
2012 2063 8.387813 ACCTTACCATTACAATTTACAGAGGAA 58.612 33.333 0.00 0.00 0.00 3.36
2020 2071 6.437793 CCCACCAACCTTACCATTACAATTTA 59.562 38.462 0.00 0.00 0.00 1.40
2030 2081 0.927767 AACACCCACCAACCTTACCA 59.072 50.000 0.00 0.00 0.00 3.25
2031 2082 1.324383 CAACACCCACCAACCTTACC 58.676 55.000 0.00 0.00 0.00 2.85
2032 2083 2.061509 ACAACACCCACCAACCTTAC 57.938 50.000 0.00 0.00 0.00 2.34
2033 2084 2.025226 TGAACAACACCCACCAACCTTA 60.025 45.455 0.00 0.00 0.00 2.69
2034 2085 1.272760 TGAACAACACCCACCAACCTT 60.273 47.619 0.00 0.00 0.00 3.50
2035 2086 0.333312 TGAACAACACCCACCAACCT 59.667 50.000 0.00 0.00 0.00 3.50
2037 2088 2.028130 TCATGAACAACACCCACCAAC 58.972 47.619 0.00 0.00 0.00 3.77
2038 2089 2.443958 TCATGAACAACACCCACCAA 57.556 45.000 0.00 0.00 0.00 3.67
2045 2103 5.224888 AGCATCACATTTCATGAACAACAC 58.775 37.500 7.89 0.00 0.00 3.32
2170 2228 3.543641 GGTATCGACCCCCACCCG 61.544 72.222 0.00 0.00 40.23 5.28
2206 2264 2.028385 ACCTGCCTTCGTTACACTTAGG 60.028 50.000 0.00 0.00 0.00 2.69
2215 2273 2.876550 GTTAACTGAACCTGCCTTCGTT 59.123 45.455 0.00 0.00 31.20 3.85
2218 2276 3.477530 ACAGTTAACTGAACCTGCCTTC 58.522 45.455 36.14 0.00 46.59 3.46
2267 2325 2.925724 TCCAAACAAGGTACCACAGTG 58.074 47.619 15.94 8.89 0.00 3.66
2268 2326 3.876309 ATCCAAACAAGGTACCACAGT 57.124 42.857 15.94 6.37 0.00 3.55
2269 2327 4.640201 CCATATCCAAACAAGGTACCACAG 59.360 45.833 15.94 5.67 0.00 3.66
2270 2328 4.043561 ACCATATCCAAACAAGGTACCACA 59.956 41.667 15.94 0.00 0.00 4.17
2271 2329 4.595986 ACCATATCCAAACAAGGTACCAC 58.404 43.478 15.94 0.00 0.00 4.16
2272 2330 4.938575 ACCATATCCAAACAAGGTACCA 57.061 40.909 15.94 0.00 0.00 3.25
2274 2332 7.562135 TCTAGAACCATATCCAAACAAGGTAC 58.438 38.462 0.00 0.00 0.00 3.34
2281 2339 9.178758 AGTGAAATTCTAGAACCATATCCAAAC 57.821 33.333 7.48 0.00 0.00 2.93
2282 2340 9.753674 AAGTGAAATTCTAGAACCATATCCAAA 57.246 29.630 7.48 0.00 0.00 3.28
2315 2426 4.327680 AGAGAGGCAAATCAAACAGTACC 58.672 43.478 0.00 0.00 0.00 3.34
2322 2433 6.946340 TGACTACATAGAGAGGCAAATCAAA 58.054 36.000 0.00 0.00 0.00 2.69
2323 2434 6.381133 TCTGACTACATAGAGAGGCAAATCAA 59.619 38.462 0.00 0.00 27.74 2.57
2324 2435 5.893824 TCTGACTACATAGAGAGGCAAATCA 59.106 40.000 0.00 0.00 27.74 2.57
2325 2436 6.264292 TCTCTGACTACATAGAGAGGCAAATC 59.736 42.308 0.00 0.00 43.21 2.17
2326 2437 6.132658 TCTCTGACTACATAGAGAGGCAAAT 58.867 40.000 0.00 0.00 43.21 2.32
2400 2511 5.895928 TGATCATTCTTCCAGAAGTACTCG 58.104 41.667 7.26 0.00 37.69 4.18
2508 2619 1.977594 AAACATAGCGCGGCGAAAGG 61.978 55.000 28.54 16.50 0.00 3.11
2552 2664 1.260033 GAGCTGATAATGTGCGCAGAC 59.740 52.381 12.22 0.00 0.00 3.51
2558 2670 5.358922 AGAGAGAAAGAGCTGATAATGTGC 58.641 41.667 0.00 0.00 0.00 4.57
2559 2671 6.817641 ACAAGAGAGAAAGAGCTGATAATGTG 59.182 38.462 0.00 0.00 0.00 3.21
2573 2685 5.702670 CCAGACATTTAGCACAAGAGAGAAA 59.297 40.000 0.00 0.00 0.00 2.52
2581 2693 7.392953 TGAATAATCACCAGACATTTAGCACAA 59.607 33.333 0.00 0.00 0.00 3.33
2602 2714 9.147732 TGCTTCTCATATCTCTTAACCTGAATA 57.852 33.333 0.00 0.00 0.00 1.75
2605 2717 6.462207 GCTGCTTCTCATATCTCTTAACCTGA 60.462 42.308 0.00 0.00 0.00 3.86
2672 3260 6.438425 ACTTCAACATGAAATTTAGGCCAGAT 59.562 34.615 5.01 0.00 35.73 2.90
2724 3313 2.613977 CCAGTAAAGGCAGACCAGACAG 60.614 54.545 0.00 0.00 39.06 3.51
2725 3314 1.347707 CCAGTAAAGGCAGACCAGACA 59.652 52.381 0.00 0.00 39.06 3.41
2738 3327 2.284754 TTGCCATGTCAGCCAGTAAA 57.715 45.000 0.00 0.00 0.00 2.01
2741 3330 0.968901 CCATTGCCATGTCAGCCAGT 60.969 55.000 0.00 0.00 0.00 4.00
2742 3331 0.968901 ACCATTGCCATGTCAGCCAG 60.969 55.000 0.00 0.00 0.00 4.85
2743 3332 0.542467 AACCATTGCCATGTCAGCCA 60.542 50.000 0.00 0.00 0.00 4.75
2744 3333 0.609662 AAACCATTGCCATGTCAGCC 59.390 50.000 0.00 0.00 0.00 4.85
2745 3334 1.273048 TGAAACCATTGCCATGTCAGC 59.727 47.619 0.00 0.00 0.00 4.26
2756 3345 5.427378 CTCAAACAAAACCCTGAAACCATT 58.573 37.500 0.00 0.00 0.00 3.16
2773 3362 3.135530 AGTCCCTCCATATCAGCTCAAAC 59.864 47.826 0.00 0.00 0.00 2.93
2867 3456 6.927936 AGAATGATACATTTCCTCACGATGAG 59.072 38.462 7.72 7.72 43.91 2.90
2868 3457 6.703165 CAGAATGATACATTTCCTCACGATGA 59.297 38.462 0.00 0.00 39.69 2.92
2869 3458 6.703165 TCAGAATGATACATTTCCTCACGATG 59.297 38.462 0.00 0.00 42.56 3.84
2895 3484 6.932400 TCGTAATAAACTGGAGAAGCAAGAAA 59.068 34.615 0.00 0.00 0.00 2.52
2905 3494 7.111593 GCGCATTATTTTCGTAATAAACTGGAG 59.888 37.037 0.30 0.00 0.00 3.86
2968 3578 7.093322 ACATTCACAAAAGGATTATGCTCTC 57.907 36.000 0.00 0.00 0.00 3.20
3002 3612 2.677979 GGACGCCACTTTTCTCGGC 61.678 63.158 0.00 0.00 42.64 5.54
3036 3646 1.128692 CCAAGATTCGAACAACGCCTC 59.871 52.381 0.00 0.00 42.26 4.70
3083 3693 1.737793 GGAACAACTTGGAGTATGCCG 59.262 52.381 0.00 0.00 0.00 5.69
3084 3694 1.737793 CGGAACAACTTGGAGTATGCC 59.262 52.381 0.00 0.00 0.00 4.40
3085 3695 2.415512 GACGGAACAACTTGGAGTATGC 59.584 50.000 0.00 0.00 0.00 3.14
3086 3696 3.926616 AGACGGAACAACTTGGAGTATG 58.073 45.455 0.00 0.00 0.00 2.39
3087 3697 4.618920 AAGACGGAACAACTTGGAGTAT 57.381 40.909 0.00 0.00 0.00 2.12
3088 3698 4.411256 AAAGACGGAACAACTTGGAGTA 57.589 40.909 0.00 0.00 0.00 2.59
3115 3725 1.115467 ACTCAGAAGGTATGGCGAGG 58.885 55.000 0.00 0.00 0.00 4.63
3118 3728 2.166459 TCAGAACTCAGAAGGTATGGCG 59.834 50.000 0.00 0.00 32.11 5.69
3142 3752 5.712917 GGTACCTGAATTTCACCATAACCAA 59.287 40.000 4.06 0.00 0.00 3.67
3228 3838 3.674138 GCGGTATGTCGAAAGTTACCTGA 60.674 47.826 4.30 0.00 33.32 3.86
3275 3885 1.006998 AGATGGCCTGCATTTAACCCA 59.993 47.619 3.32 0.00 0.00 4.51
3277 3887 3.893326 AAAGATGGCCTGCATTTAACC 57.107 42.857 3.32 0.00 0.00 2.85
3281 3891 1.404583 GCGAAAAGATGGCCTGCATTT 60.405 47.619 3.32 0.95 0.00 2.32
3299 3909 2.753989 TTGAACGATTGGCATATGCG 57.246 45.000 21.04 9.59 43.26 4.73
3372 3982 0.465097 ATTCAGCTCCCATTCGCCAG 60.465 55.000 0.00 0.00 0.00 4.85
3423 4033 5.068987 TGTCCAATTGCCATAATTAGAAGCC 59.931 40.000 0.00 0.00 0.00 4.35
3429 4039 7.093814 GCTCCATATGTCCAATTGCCATAATTA 60.094 37.037 15.67 0.00 0.00 1.40
3475 4085 6.364701 TGAAGTATCAAAGATGGTAATGGGG 58.635 40.000 0.00 0.00 30.99 4.96
3492 4102 9.650539 CATGCTATGCTATCTAGTTTGAAGTAT 57.349 33.333 0.00 0.00 0.00 2.12
3495 4105 6.933521 ACCATGCTATGCTATCTAGTTTGAAG 59.066 38.462 0.00 0.00 0.00 3.02
3500 4113 6.425210 TGAACCATGCTATGCTATCTAGTT 57.575 37.500 0.00 0.00 0.00 2.24
3526 4139 6.798482 TGAGCTCCTAATTTTGCATTATGTG 58.202 36.000 12.15 0.00 0.00 3.21
3527 4140 7.069085 ACATGAGCTCCTAATTTTGCATTATGT 59.931 33.333 12.15 6.02 0.00 2.29
3528 4141 7.431249 ACATGAGCTCCTAATTTTGCATTATG 58.569 34.615 12.15 5.37 0.00 1.90
3529 4142 7.592885 ACATGAGCTCCTAATTTTGCATTAT 57.407 32.000 12.15 0.00 0.00 1.28
3530 4143 7.555914 TGTACATGAGCTCCTAATTTTGCATTA 59.444 33.333 12.15 0.00 0.00 1.90
3531 4144 5.927281 ACATGAGCTCCTAATTTTGCATT 57.073 34.783 12.15 0.00 0.00 3.56
3532 4145 5.887598 TGTACATGAGCTCCTAATTTTGCAT 59.112 36.000 12.15 0.00 0.00 3.96
3533 4146 5.123820 GTGTACATGAGCTCCTAATTTTGCA 59.876 40.000 12.15 0.00 0.00 4.08
3534 4147 5.123820 TGTGTACATGAGCTCCTAATTTTGC 59.876 40.000 12.15 0.00 0.00 3.68
3535 4148 6.741992 TGTGTACATGAGCTCCTAATTTTG 57.258 37.500 12.15 0.37 0.00 2.44
3536 4149 9.461312 TTTATGTGTACATGAGCTCCTAATTTT 57.539 29.630 12.15 0.00 37.15 1.82
3537 4150 9.632638 ATTTATGTGTACATGAGCTCCTAATTT 57.367 29.630 12.15 0.00 37.15 1.82
3560 4173 6.939163 AGTCAGTTCAAGTATCTCAGCAATTT 59.061 34.615 0.00 0.00 0.00 1.82
3561 4174 6.370994 CAGTCAGTTCAAGTATCTCAGCAATT 59.629 38.462 0.00 0.00 0.00 2.32
3563 4176 5.011023 TCAGTCAGTTCAAGTATCTCAGCAA 59.989 40.000 0.00 0.00 0.00 3.91
3564 4177 4.524328 TCAGTCAGTTCAAGTATCTCAGCA 59.476 41.667 0.00 0.00 0.00 4.41
3565 4178 5.065704 TCAGTCAGTTCAAGTATCTCAGC 57.934 43.478 0.00 0.00 0.00 4.26
3566 4179 6.585702 CAGTTCAGTCAGTTCAAGTATCTCAG 59.414 42.308 0.00 0.00 0.00 3.35
3567 4180 6.450545 CAGTTCAGTCAGTTCAAGTATCTCA 58.549 40.000 0.00 0.00 0.00 3.27
3568 4181 5.347364 GCAGTTCAGTCAGTTCAAGTATCTC 59.653 44.000 0.00 0.00 0.00 2.75
3569 4182 5.221521 TGCAGTTCAGTCAGTTCAAGTATCT 60.222 40.000 0.00 0.00 0.00 1.98
3570 4183 4.991056 TGCAGTTCAGTCAGTTCAAGTATC 59.009 41.667 0.00 0.00 0.00 2.24
3571 4184 4.960938 TGCAGTTCAGTCAGTTCAAGTAT 58.039 39.130 0.00 0.00 0.00 2.12
3573 4186 3.201290 CTGCAGTTCAGTCAGTTCAAGT 58.799 45.455 5.25 0.00 38.02 3.16
3576 4189 1.139654 AGCTGCAGTTCAGTCAGTTCA 59.860 47.619 16.64 0.00 44.66 3.18
3577 4190 1.530293 CAGCTGCAGTTCAGTCAGTTC 59.470 52.381 16.64 0.00 44.66 3.01
3580 4193 0.034476 TCCAGCTGCAGTTCAGTCAG 59.966 55.000 16.64 0.00 44.66 3.51
3581 4194 0.250038 GTCCAGCTGCAGTTCAGTCA 60.250 55.000 16.64 0.00 44.66 3.41
3582 4195 0.952984 GGTCCAGCTGCAGTTCAGTC 60.953 60.000 16.64 0.88 44.66 3.51
3583 4196 1.072159 GGTCCAGCTGCAGTTCAGT 59.928 57.895 16.64 0.00 44.66 3.41
3584 4197 1.673665 GGGTCCAGCTGCAGTTCAG 60.674 63.158 16.64 3.03 45.62 3.02
3585 4198 1.708993 AAGGGTCCAGCTGCAGTTCA 61.709 55.000 16.64 0.00 0.00 3.18
3586 4199 1.073897 AAGGGTCCAGCTGCAGTTC 59.926 57.895 16.64 0.00 0.00 3.01
3587 4200 1.228367 CAAGGGTCCAGCTGCAGTT 60.228 57.895 16.64 6.37 0.00 3.16
3588 4201 2.149383 TCAAGGGTCCAGCTGCAGT 61.149 57.895 16.64 0.00 0.00 4.40
3589 4202 1.673665 GTCAAGGGTCCAGCTGCAG 60.674 63.158 10.11 10.11 0.00 4.41
3590 4203 2.401699 CTGTCAAGGGTCCAGCTGCA 62.402 60.000 8.66 0.00 0.00 4.41
3591 4204 1.673665 CTGTCAAGGGTCCAGCTGC 60.674 63.158 8.66 0.00 0.00 5.25
3592 4205 1.002868 CCTGTCAAGGGTCCAGCTG 60.003 63.158 6.78 6.78 40.27 4.24
3593 4206 1.152030 TCCTGTCAAGGGTCCAGCT 60.152 57.895 0.00 0.00 44.62 4.24
3594 4207 1.298014 CTCCTGTCAAGGGTCCAGC 59.702 63.158 0.00 0.00 44.62 4.85
3595 4208 1.059913 AACTCCTGTCAAGGGTCCAG 58.940 55.000 0.00 0.00 44.62 3.86
3596 4209 0.764890 CAACTCCTGTCAAGGGTCCA 59.235 55.000 0.00 0.00 44.62 4.02
3597 4210 0.036875 CCAACTCCTGTCAAGGGTCC 59.963 60.000 0.00 0.00 44.62 4.46
3598 4211 0.606673 GCCAACTCCTGTCAAGGGTC 60.607 60.000 0.00 0.00 44.62 4.46
3599 4212 1.352622 TGCCAACTCCTGTCAAGGGT 61.353 55.000 0.00 0.00 44.62 4.34
3600 4213 0.178992 TTGCCAACTCCTGTCAAGGG 60.179 55.000 0.00 0.00 44.62 3.95
3601 4214 1.542915 CATTGCCAACTCCTGTCAAGG 59.457 52.381 0.00 0.00 46.06 3.61
3602 4215 2.507484 TCATTGCCAACTCCTGTCAAG 58.493 47.619 0.00 0.00 0.00 3.02
3635 4248 3.746492 GCTTGGGTATGCTAAAGTATCGG 59.254 47.826 0.00 0.00 0.00 4.18
3644 4257 3.054728 TGCTTACTTGCTTGGGTATGCTA 60.055 43.478 0.00 0.00 38.79 3.49
3650 4263 2.584835 TGATGCTTACTTGCTTGGGT 57.415 45.000 0.00 0.00 0.00 4.51
3719 4332 5.357032 GGTTTTGGGTAGTATGATTGACTGG 59.643 44.000 0.00 0.00 0.00 4.00
3724 4337 5.013547 TGGTGGTTTTGGGTAGTATGATTG 58.986 41.667 0.00 0.00 0.00 2.67
3731 4344 2.647802 AGCTATGGTGGTTTTGGGTAGT 59.352 45.455 0.00 0.00 0.00 2.73
3737 4350 2.356135 ACGCTAGCTATGGTGGTTTTG 58.644 47.619 13.93 0.00 0.00 2.44
3738 4351 2.781681 ACGCTAGCTATGGTGGTTTT 57.218 45.000 13.93 0.00 0.00 2.43
3745 4358 2.455674 TGCCAATACGCTAGCTATGG 57.544 50.000 13.93 15.34 0.00 2.74
3748 4361 4.058124 CTCATTTGCCAATACGCTAGCTA 58.942 43.478 13.93 4.80 0.00 3.32
3749 4362 2.874701 CTCATTTGCCAATACGCTAGCT 59.125 45.455 13.93 2.46 0.00 3.32
3750 4363 2.603173 GCTCATTTGCCAATACGCTAGC 60.603 50.000 4.06 4.06 0.00 3.42
3751 4364 2.613595 TGCTCATTTGCCAATACGCTAG 59.386 45.455 5.28 0.00 0.00 3.42
3752 4365 2.637947 TGCTCATTTGCCAATACGCTA 58.362 42.857 5.28 0.00 0.00 4.26
3753 4366 1.462616 TGCTCATTTGCCAATACGCT 58.537 45.000 5.28 0.00 0.00 5.07
3754 4367 2.121786 CATGCTCATTTGCCAATACGC 58.878 47.619 0.00 0.00 0.00 4.42
3755 4368 2.099592 ACCATGCTCATTTGCCAATACG 59.900 45.455 0.00 0.00 0.00 3.06
3756 4369 3.130869 TCACCATGCTCATTTGCCAATAC 59.869 43.478 0.00 0.00 0.00 1.89
3757 4370 3.130869 GTCACCATGCTCATTTGCCAATA 59.869 43.478 0.00 0.00 0.00 1.90
3760 4373 0.889994 GTCACCATGCTCATTTGCCA 59.110 50.000 0.00 0.00 0.00 4.92
3761 4374 0.174162 GGTCACCATGCTCATTTGCC 59.826 55.000 0.00 0.00 0.00 4.52
3766 4379 3.264193 TGTTCTTAGGTCACCATGCTCAT 59.736 43.478 0.00 0.00 0.00 2.90
3774 4387 4.015872 TCATGGTTGTTCTTAGGTCACC 57.984 45.455 0.00 0.00 0.00 4.02
3776 4389 5.530915 CACTTTCATGGTTGTTCTTAGGTCA 59.469 40.000 0.00 0.00 0.00 4.02
3780 4393 6.710744 ACCTACACTTTCATGGTTGTTCTTAG 59.289 38.462 0.00 0.00 0.00 2.18
3789 4402 4.278419 GCTCAAAACCTACACTTTCATGGT 59.722 41.667 0.00 0.00 0.00 3.55
3791 4404 5.437289 TGCTCAAAACCTACACTTTCATG 57.563 39.130 0.00 0.00 0.00 3.07
3792 4405 5.769662 TGATGCTCAAAACCTACACTTTCAT 59.230 36.000 0.00 0.00 0.00 2.57
3793 4406 5.129634 TGATGCTCAAAACCTACACTTTCA 58.870 37.500 0.00 0.00 0.00 2.69
3794 4407 5.689383 TGATGCTCAAAACCTACACTTTC 57.311 39.130 0.00 0.00 0.00 2.62
3797 4410 5.072741 ACATTGATGCTCAAAACCTACACT 58.927 37.500 3.27 0.00 40.12 3.55
3798 4411 5.376854 ACATTGATGCTCAAAACCTACAC 57.623 39.130 3.27 0.00 40.12 2.90
3799 4412 7.537715 CAATACATTGATGCTCAAAACCTACA 58.462 34.615 0.00 0.00 40.12 2.74
3800 4413 6.473455 GCAATACATTGATGCTCAAAACCTAC 59.527 38.462 6.13 0.00 40.12 3.18
3801 4414 6.405731 GGCAATACATTGATGCTCAAAACCTA 60.406 38.462 6.13 0.00 40.12 3.08
3802 4415 5.413499 GCAATACATTGATGCTCAAAACCT 58.587 37.500 6.13 0.00 40.12 3.50
3803 4416 4.567959 GGCAATACATTGATGCTCAAAACC 59.432 41.667 6.13 0.00 40.12 3.27
3804 4417 5.413499 AGGCAATACATTGATGCTCAAAAC 58.587 37.500 6.13 0.00 40.12 2.43
3807 4424 3.633525 GGAGGCAATACATTGATGCTCAA 59.366 43.478 6.13 1.85 41.09 3.02
3817 4434 5.224441 TCTTAGGGTTAGGAGGCAATACAT 58.776 41.667 0.00 0.00 0.00 2.29
3818 4435 4.627015 TCTTAGGGTTAGGAGGCAATACA 58.373 43.478 0.00 0.00 0.00 2.29
3819 4436 5.544562 AGATCTTAGGGTTAGGAGGCAATAC 59.455 44.000 0.00 0.00 0.00 1.89
3823 4440 3.708236 AGATCTTAGGGTTAGGAGGCA 57.292 47.619 0.00 0.00 0.00 4.75
3835 4458 7.540400 CACCGTGCTCTGATATTAAGATCTTAG 59.460 40.741 14.63 9.08 0.00 2.18
3842 4465 4.060038 ACCACCGTGCTCTGATATTAAG 57.940 45.455 0.00 0.00 0.00 1.85
3843 4466 4.481368 AACCACCGTGCTCTGATATTAA 57.519 40.909 0.00 0.00 0.00 1.40
3845 4468 3.350219 AAACCACCGTGCTCTGATATT 57.650 42.857 0.00 0.00 0.00 1.28
3848 4471 1.981256 AAAAACCACCGTGCTCTGAT 58.019 45.000 0.00 0.00 0.00 2.90
3866 4489 9.916360 TGATCAGACTAAGGTATGAGTAGTAAA 57.084 33.333 0.00 0.00 45.12 2.01
3867 4490 9.339850 GTGATCAGACTAAGGTATGAGTAGTAA 57.660 37.037 0.00 0.00 45.12 2.24
3879 4502 4.082733 TGTTCACTCGTGATCAGACTAAGG 60.083 45.833 0.00 0.00 39.64 2.69
3883 4506 4.489810 GAATGTTCACTCGTGATCAGACT 58.510 43.478 14.06 4.34 41.07 3.24
3884 4507 3.614616 GGAATGTTCACTCGTGATCAGAC 59.385 47.826 14.06 10.65 41.07 3.51
3885 4508 3.511540 AGGAATGTTCACTCGTGATCAGA 59.488 43.478 14.06 0.00 41.07 3.27
3890 4517 2.628178 ACAGAGGAATGTTCACTCGTGA 59.372 45.455 0.00 0.00 36.40 4.35
3922 4549 1.935933 ATTTGCCGTCAGGATCGTAC 58.064 50.000 0.00 0.00 41.02 3.67
3934 4561 1.071502 CAGTACGCGACATATTTGCCG 60.072 52.381 15.93 0.00 0.00 5.69
3938 4565 2.596904 AGCCAGTACGCGACATATTT 57.403 45.000 15.93 0.00 0.00 1.40
3961 4588 4.273257 GCTAGCGACCGGAGCTCC 62.273 72.222 26.91 23.79 44.79 4.70
3967 4594 0.672401 TTTCCTTTGCTAGCGACCGG 60.672 55.000 10.77 11.31 0.00 5.28
3970 4597 2.003301 CTCCTTTCCTTTGCTAGCGAC 58.997 52.381 10.77 0.00 0.00 5.19
3973 4600 4.075682 AGTTTCTCCTTTCCTTTGCTAGC 58.924 43.478 8.10 8.10 0.00 3.42
3976 4603 3.891977 GGAAGTTTCTCCTTTCCTTTGCT 59.108 43.478 0.00 0.00 37.86 3.91
3991 4618 0.251341 ATGAAGCGCCTGGGAAGTTT 60.251 50.000 2.29 0.00 0.00 2.66
4006 4633 3.521560 GACGACCTGCTTGATGTATGAA 58.478 45.455 0.00 0.00 0.00 2.57
4135 4766 7.448420 CCACTGACTCTTGATTGATGGTATAT 58.552 38.462 0.00 0.00 0.00 0.86
4144 4775 7.295322 TCTATATCCCACTGACTCTTGATTG 57.705 40.000 0.00 0.00 0.00 2.67
4145 4776 6.014669 GCTCTATATCCCACTGACTCTTGATT 60.015 42.308 0.00 0.00 0.00 2.57
4148 4779 4.586421 TGCTCTATATCCCACTGACTCTTG 59.414 45.833 0.00 0.00 0.00 3.02
4159 4790 5.997746 TGCTGTAACATTTGCTCTATATCCC 59.002 40.000 0.00 0.00 0.00 3.85
4163 4794 6.202762 CCGATTGCTGTAACATTTGCTCTATA 59.797 38.462 0.00 0.00 0.00 1.31
4166 4797 3.127548 CCGATTGCTGTAACATTTGCTCT 59.872 43.478 0.00 0.00 0.00 4.09
4168 4799 2.819608 ACCGATTGCTGTAACATTTGCT 59.180 40.909 0.00 0.00 0.00 3.91
4181 4812 2.097444 CGTTTGCTTTTCAACCGATTGC 60.097 45.455 0.00 0.00 42.22 3.56
4182 4813 3.367607 TCGTTTGCTTTTCAACCGATTG 58.632 40.909 0.00 0.00 43.15 2.67
4184 4815 2.875933 TCTCGTTTGCTTTTCAACCGAT 59.124 40.909 0.00 0.00 46.01 4.18
4186 4817 2.748461 TCTCGTTTGCTTTTCAACCG 57.252 45.000 0.00 0.00 41.19 4.44
4191 4822 3.665871 GCTTCACATCTCGTTTGCTTTTC 59.334 43.478 0.00 0.00 0.00 2.29
4201 4832 4.580855 CTTTCTGAAGCTTCACATCTCG 57.419 45.455 25.16 14.23 32.90 4.04
4218 4849 8.668353 TGATACATACATTTCACAGAAGCTTTC 58.332 33.333 0.00 0.00 0.00 2.62
4265 4896 6.832384 AGCAAGATCAGGATCATGTTTTGTAT 59.168 34.615 7.33 0.00 38.41 2.29
4338 5025 3.192633 TGTTACTCGCTGTTATGAGCTGA 59.807 43.478 0.00 0.00 36.77 4.26
4353 5040 3.319137 TCTGTGCTGGATGTGTTACTC 57.681 47.619 0.00 0.00 0.00 2.59
4355 5042 5.411361 TGTTAATCTGTGCTGGATGTGTTAC 59.589 40.000 0.00 0.00 0.00 2.50
4380 5067 5.456822 GCATTTCTTTAGCTTCTAATTGCCG 59.543 40.000 0.00 0.00 0.00 5.69
4432 5123 3.817647 ACTCTGTTGTTGAGAATTGAGGC 59.182 43.478 0.00 0.00 35.66 4.70
4654 5347 2.025898 GCAGGGTCTACTACAGAGGAC 58.974 57.143 0.00 0.00 32.51 3.85
4665 5358 1.497286 ACAACAAAAGGGCAGGGTCTA 59.503 47.619 0.00 0.00 0.00 2.59
4695 5388 2.690840 CTATACCAACCAGGGGCTACT 58.309 52.381 0.00 0.00 43.89 2.57
4726 5419 2.987149 AGTACAAAGCGTTGATGAGTCG 59.013 45.455 19.51 0.00 38.20 4.18
4758 5451 1.896220 TGTCAATGACAGGCAGTTCC 58.104 50.000 12.63 0.00 37.67 3.62
4947 5641 7.933577 CACTTTCCAGTCATAGGCTATTTCATA 59.066 37.037 3.76 0.00 0.00 2.15
4986 5703 4.161377 TCTCTCTCTCTCTCTGATGTTCGA 59.839 45.833 0.00 0.00 0.00 3.71
4988 5705 5.674525 TCTCTCTCTCTCTCTCTGATGTTC 58.325 45.833 0.00 0.00 0.00 3.18
4995 5712 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4996 5713 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
4997 5714 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
4998 5715 4.646945 TGTCTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
4999 5716 4.614475 TGTCTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
5000 5717 4.646945 TCTGTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
5006 5723 4.744795 AGTCTCTGTCTCTCTCTCTCTC 57.255 50.000 0.00 0.00 0.00 3.20
5007 5724 5.104900 GGTTAGTCTCTGTCTCTCTCTCTCT 60.105 48.000 0.00 0.00 0.00 3.10
5020 5737 2.300152 TGGTGAGCAAGGTTAGTCTCTG 59.700 50.000 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.