Multiple sequence alignment - TraesCS7B01G391900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G391900 chr7B 100.000 2309 0 0 1 2309 658269282 658266974 0.000000e+00 4265.0
1 TraesCS7B01G391900 chr7B 84.502 271 37 5 119 385 528747167 528747436 1.760000e-66 263.0
2 TraesCS7B01G391900 chr7B 84.387 269 37 5 117 381 397446414 397446681 2.280000e-65 259.0
3 TraesCS7B01G391900 chr7B 96.825 126 3 1 2106 2230 233601754 233601879 2.320000e-50 209.0
4 TraesCS7B01G391900 chr6D 94.321 722 37 4 1395 2115 387995951 387995233 0.000000e+00 1103.0
5 TraesCS7B01G391900 chr6D 94.413 716 33 7 1405 2115 62137633 62136920 0.000000e+00 1094.0
6 TraesCS7B01G391900 chr6D 92.837 726 43 8 1396 2115 25538575 25539297 0.000000e+00 1044.0
7 TraesCS7B01G391900 chr6D 85.280 625 72 11 694 1304 37933790 37934408 5.420000e-176 627.0
8 TraesCS7B01G391900 chr6D 83.024 701 67 29 635 1304 37927497 37928176 2.560000e-164 588.0
9 TraesCS7B01G391900 chr1D 94.390 713 35 5 1405 2115 430107826 430107117 0.000000e+00 1090.0
10 TraesCS7B01G391900 chr5B 93.767 722 39 5 1398 2117 49551897 49552614 0.000000e+00 1079.0
11 TraesCS7B01G391900 chr5B 83.755 277 38 7 115 385 434058569 434058844 2.940000e-64 255.0
12 TraesCS7B01G391900 chr2D 93.499 723 40 6 1396 2115 594477551 594478269 0.000000e+00 1068.0
13 TraesCS7B01G391900 chr2D 93.213 722 44 5 1396 2115 66158437 66157719 0.000000e+00 1057.0
14 TraesCS7B01G391900 chrUn 92.975 726 44 6 1396 2117 338079636 338080358 0.000000e+00 1051.0
15 TraesCS7B01G391900 chr5A 92.966 725 43 6 1396 2117 663924324 663925043 0.000000e+00 1050.0
16 TraesCS7B01G391900 chr5A 91.146 192 14 1 2118 2309 678017677 678017489 8.190000e-65 257.0
17 TraesCS7B01G391900 chr5A 92.593 135 9 1 2120 2253 87366146 87366012 2.340000e-45 193.0
18 TraesCS7B01G391900 chr7D 88.746 622 63 3 677 1298 587150452 587149838 0.000000e+00 754.0
19 TraesCS7B01G391900 chr7D 84.701 268 38 3 124 388 128915579 128915312 4.890000e-67 265.0
20 TraesCS7B01G391900 chr7D 90.058 171 12 3 382 547 587150623 587150453 1.390000e-52 217.0
21 TraesCS7B01G391900 chr6B 83.866 595 69 16 727 1304 88735883 88736467 2.020000e-150 542.0
22 TraesCS7B01G391900 chr6B 84.917 484 53 14 827 1304 88717346 88717815 2.690000e-129 472.0
23 TraesCS7B01G391900 chr7A 87.500 488 32 4 920 1396 679004356 679003887 9.390000e-149 536.0
24 TraesCS7B01G391900 chr7A 85.882 255 18 9 379 628 679004821 679004580 2.940000e-64 255.0
25 TraesCS7B01G391900 chr7A 83.590 195 24 6 2118 2306 449258209 449258401 2.360000e-40 176.0
26 TraesCS7B01G391900 chr6A 81.818 660 66 23 657 1304 49196516 49197133 2.650000e-139 505.0
27 TraesCS7B01G391900 chr6A 83.302 533 62 20 874 1396 49201975 49202490 1.250000e-127 466.0
28 TraesCS7B01G391900 chr6A 81.571 624 61 27 694 1304 49483553 49484135 1.250000e-127 466.0
29 TraesCS7B01G391900 chr3B 87.170 265 29 5 121 381 687075943 687075680 1.730000e-76 296.0
30 TraesCS7B01G391900 chr3B 93.264 193 12 1 2118 2309 291506212 291506020 1.350000e-72 283.0
31 TraesCS7B01G391900 chr3B 96.721 122 3 1 2109 2230 748763606 748763486 3.890000e-48 202.0
32 TraesCS7B01G391900 chr3B 95.556 90 4 0 2220 2309 26115184 26115095 6.650000e-31 145.0
33 TraesCS7B01G391900 chr4A 86.742 264 30 5 122 381 438615257 438615519 2.900000e-74 289.0
34 TraesCS7B01G391900 chr4A 84.133 271 37 6 117 382 645738931 645739200 8.190000e-65 257.0
35 TraesCS7B01G391900 chr4A 94.853 136 7 0 2118 2253 47798099 47798234 1.800000e-51 213.0
36 TraesCS7B01G391900 chr1B 92.708 192 14 0 2118 2309 428045253 428045444 6.280000e-71 278.0
37 TraesCS7B01G391900 chr1B 93.684 95 5 1 2216 2309 174569922 174569828 8.600000e-30 141.0
38 TraesCS7B01G391900 chr1A 86.207 261 31 5 125 381 98283982 98284241 6.280000e-71 278.0
39 TraesCS7B01G391900 chr1A 84.815 270 29 10 124 384 53445277 53445011 6.330000e-66 261.0
40 TraesCS7B01G391900 chr2B 95.238 126 5 1 2105 2230 93968215 93968091 5.030000e-47 198.0
41 TraesCS7B01G391900 chr2B 96.667 90 3 0 2220 2309 530150170 530150081 1.430000e-32 150.0
42 TraesCS7B01G391900 chr4B 92.929 99 6 1 2211 2309 65669786 65669883 2.390000e-30 143.0
43 TraesCS7B01G391900 chr4B 91.919 99 7 1 2211 2309 377771436 377771533 1.110000e-28 137.0
44 TraesCS7B01G391900 chr3D 77.670 206 13 7 379 560 12193683 12193879 6.790000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G391900 chr7B 658266974 658269282 2308 True 4265.0 4265 100.000 1 2309 1 chr7B.!!$R1 2308
1 TraesCS7B01G391900 chr6D 387995233 387995951 718 True 1103.0 1103 94.321 1395 2115 1 chr6D.!!$R2 720
2 TraesCS7B01G391900 chr6D 62136920 62137633 713 True 1094.0 1094 94.413 1405 2115 1 chr6D.!!$R1 710
3 TraesCS7B01G391900 chr6D 25538575 25539297 722 False 1044.0 1044 92.837 1396 2115 1 chr6D.!!$F1 719
4 TraesCS7B01G391900 chr6D 37933790 37934408 618 False 627.0 627 85.280 694 1304 1 chr6D.!!$F3 610
5 TraesCS7B01G391900 chr6D 37927497 37928176 679 False 588.0 588 83.024 635 1304 1 chr6D.!!$F2 669
6 TraesCS7B01G391900 chr1D 430107117 430107826 709 True 1090.0 1090 94.390 1405 2115 1 chr1D.!!$R1 710
7 TraesCS7B01G391900 chr5B 49551897 49552614 717 False 1079.0 1079 93.767 1398 2117 1 chr5B.!!$F1 719
8 TraesCS7B01G391900 chr2D 594477551 594478269 718 False 1068.0 1068 93.499 1396 2115 1 chr2D.!!$F1 719
9 TraesCS7B01G391900 chr2D 66157719 66158437 718 True 1057.0 1057 93.213 1396 2115 1 chr2D.!!$R1 719
10 TraesCS7B01G391900 chrUn 338079636 338080358 722 False 1051.0 1051 92.975 1396 2117 1 chrUn.!!$F1 721
11 TraesCS7B01G391900 chr5A 663924324 663925043 719 False 1050.0 1050 92.966 1396 2117 1 chr5A.!!$F1 721
12 TraesCS7B01G391900 chr7D 587149838 587150623 785 True 485.5 754 89.402 382 1298 2 chr7D.!!$R2 916
13 TraesCS7B01G391900 chr6B 88735883 88736467 584 False 542.0 542 83.866 727 1304 1 chr6B.!!$F2 577
14 TraesCS7B01G391900 chr7A 679003887 679004821 934 True 395.5 536 86.691 379 1396 2 chr7A.!!$R1 1017
15 TraesCS7B01G391900 chr6A 49196516 49197133 617 False 505.0 505 81.818 657 1304 1 chr6A.!!$F1 647
16 TraesCS7B01G391900 chr6A 49201975 49202490 515 False 466.0 466 83.302 874 1396 1 chr6A.!!$F2 522
17 TraesCS7B01G391900 chr6A 49483553 49484135 582 False 466.0 466 81.571 694 1304 1 chr6A.!!$F3 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 588 0.098728 CTGCCCGAAACGCAAATAGG 59.901 55.0 0.0 0.0 35.4 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 2240 0.105658 TCGAGGACCCCCTAATCCAG 60.106 60.0 0.0 0.0 44.53 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.474920 TCAAGCCTTTAGAAAATGTTAAATGTG 57.525 29.630 0.00 0.00 0.00 3.21
42 43 9.260002 CAAGCCTTTAGAAAATGTTAAATGTGT 57.740 29.630 0.00 0.00 0.00 3.72
137 138 7.939784 ATGTAAAAATGTACTCCCTTCTTCC 57.060 36.000 0.00 0.00 0.00 3.46
138 139 6.243148 TGTAAAAATGTACTCCCTTCTTCCC 58.757 40.000 0.00 0.00 0.00 3.97
139 140 5.333566 AAAAATGTACTCCCTTCTTCCCA 57.666 39.130 0.00 0.00 0.00 4.37
140 141 5.333566 AAAATGTACTCCCTTCTTCCCAA 57.666 39.130 0.00 0.00 0.00 4.12
141 142 5.333566 AAATGTACTCCCTTCTTCCCAAA 57.666 39.130 0.00 0.00 0.00 3.28
142 143 5.333566 AATGTACTCCCTTCTTCCCAAAA 57.666 39.130 0.00 0.00 0.00 2.44
143 144 5.536497 ATGTACTCCCTTCTTCCCAAAAT 57.464 39.130 0.00 0.00 0.00 1.82
144 145 6.652205 ATGTACTCCCTTCTTCCCAAAATA 57.348 37.500 0.00 0.00 0.00 1.40
145 146 6.652205 TGTACTCCCTTCTTCCCAAAATAT 57.348 37.500 0.00 0.00 0.00 1.28
146 147 7.758820 TGTACTCCCTTCTTCCCAAAATATA 57.241 36.000 0.00 0.00 0.00 0.86
147 148 8.165267 TGTACTCCCTTCTTCCCAAAATATAA 57.835 34.615 0.00 0.00 0.00 0.98
148 149 8.272173 TGTACTCCCTTCTTCCCAAAATATAAG 58.728 37.037 0.00 0.00 0.00 1.73
149 150 7.525158 ACTCCCTTCTTCCCAAAATATAAGA 57.475 36.000 0.00 0.00 0.00 2.10
150 151 8.119062 ACTCCCTTCTTCCCAAAATATAAGAT 57.881 34.615 0.00 0.00 0.00 2.40
151 152 8.001292 ACTCCCTTCTTCCCAAAATATAAGATG 58.999 37.037 0.00 0.00 0.00 2.90
152 153 7.882755 TCCCTTCTTCCCAAAATATAAGATGT 58.117 34.615 0.00 0.00 0.00 3.06
153 154 7.779798 TCCCTTCTTCCCAAAATATAAGATGTG 59.220 37.037 0.00 0.00 0.00 3.21
154 155 7.779798 CCCTTCTTCCCAAAATATAAGATGTGA 59.220 37.037 0.00 0.00 0.00 3.58
155 156 9.359653 CCTTCTTCCCAAAATATAAGATGTGAT 57.640 33.333 0.00 0.00 0.00 3.06
158 159 9.919416 TCTTCCCAAAATATAAGATGTGATTGA 57.081 29.630 0.00 0.00 0.00 2.57
159 160 9.956720 CTTCCCAAAATATAAGATGTGATTGAC 57.043 33.333 0.00 0.00 0.00 3.18
160 161 9.699410 TTCCCAAAATATAAGATGTGATTGACT 57.301 29.630 0.00 0.00 0.00 3.41
161 162 9.699410 TCCCAAAATATAAGATGTGATTGACTT 57.301 29.630 0.00 0.00 0.00 3.01
166 167 9.793252 AAATATAAGATGTGATTGACTTTGCAC 57.207 29.630 0.00 0.00 0.00 4.57
167 168 3.818961 AGATGTGATTGACTTTGCACG 57.181 42.857 0.00 0.00 34.12 5.34
168 169 2.485426 AGATGTGATTGACTTTGCACGG 59.515 45.455 0.00 0.00 34.12 4.94
169 170 1.674359 TGTGATTGACTTTGCACGGT 58.326 45.000 0.00 0.00 34.12 4.83
170 171 1.601903 TGTGATTGACTTTGCACGGTC 59.398 47.619 10.31 10.31 34.12 4.79
171 172 1.873591 GTGATTGACTTTGCACGGTCT 59.126 47.619 16.08 1.16 34.01 3.85
172 173 2.290641 GTGATTGACTTTGCACGGTCTT 59.709 45.455 16.08 6.80 34.01 3.01
173 174 2.948979 TGATTGACTTTGCACGGTCTTT 59.051 40.909 16.08 6.53 34.01 2.52
174 175 2.842208 TTGACTTTGCACGGTCTTTG 57.158 45.000 16.08 0.00 34.01 2.77
175 176 2.031258 TGACTTTGCACGGTCTTTGA 57.969 45.000 16.08 0.00 34.01 2.69
176 177 2.571212 TGACTTTGCACGGTCTTTGAT 58.429 42.857 16.08 0.00 34.01 2.57
177 178 2.290367 TGACTTTGCACGGTCTTTGATG 59.710 45.455 16.08 0.00 34.01 3.07
178 179 1.001378 ACTTTGCACGGTCTTTGATGC 60.001 47.619 0.00 0.00 38.59 3.91
179 180 1.001487 CTTTGCACGGTCTTTGATGCA 60.001 47.619 0.00 0.00 45.94 3.96
180 181 1.246649 TTGCACGGTCTTTGATGCAT 58.753 45.000 0.00 0.00 46.75 3.96
181 182 0.522626 TGCACGGTCTTTGATGCATG 59.477 50.000 2.46 0.00 42.92 4.06
182 183 0.804364 GCACGGTCTTTGATGCATGA 59.196 50.000 2.46 0.00 38.00 3.07
183 184 1.466360 GCACGGTCTTTGATGCATGAC 60.466 52.381 2.46 4.99 38.00 3.06
184 185 2.079158 CACGGTCTTTGATGCATGACT 58.921 47.619 2.46 0.00 0.00 3.41
185 186 2.485426 CACGGTCTTTGATGCATGACTT 59.515 45.455 2.46 0.00 0.00 3.01
186 187 3.058016 CACGGTCTTTGATGCATGACTTT 60.058 43.478 2.46 0.00 0.00 2.66
187 188 3.058016 ACGGTCTTTGATGCATGACTTTG 60.058 43.478 2.46 2.79 0.00 2.77
188 189 3.189080 CGGTCTTTGATGCATGACTTTGA 59.811 43.478 2.46 0.00 0.00 2.69
189 190 4.320421 CGGTCTTTGATGCATGACTTTGAA 60.320 41.667 2.46 0.00 0.00 2.69
190 191 4.919754 GGTCTTTGATGCATGACTTTGAAC 59.080 41.667 2.46 0.00 0.00 3.18
191 192 5.507817 GGTCTTTGATGCATGACTTTGAACA 60.508 40.000 2.46 0.00 0.00 3.18
192 193 5.400485 GTCTTTGATGCATGACTTTGAACAC 59.600 40.000 2.46 0.00 0.00 3.32
193 194 5.300034 TCTTTGATGCATGACTTTGAACACT 59.700 36.000 2.46 0.00 0.00 3.55
194 195 6.486320 TCTTTGATGCATGACTTTGAACACTA 59.514 34.615 2.46 0.00 0.00 2.74
195 196 6.631971 TTGATGCATGACTTTGAACACTAA 57.368 33.333 2.46 0.00 0.00 2.24
196 197 6.822667 TGATGCATGACTTTGAACACTAAT 57.177 33.333 2.46 0.00 0.00 1.73
197 198 7.920160 TGATGCATGACTTTGAACACTAATA 57.080 32.000 2.46 0.00 0.00 0.98
198 199 8.510243 TGATGCATGACTTTGAACACTAATAT 57.490 30.769 2.46 0.00 0.00 1.28
199 200 9.612066 TGATGCATGACTTTGAACACTAATATA 57.388 29.630 2.46 0.00 0.00 0.86
237 238 8.874744 TGGATTGAACATGTATAAATGCATTG 57.125 30.769 13.82 1.29 30.47 2.82
238 239 8.476447 TGGATTGAACATGTATAAATGCATTGT 58.524 29.630 13.82 7.74 30.47 2.71
239 240 8.971321 GGATTGAACATGTATAAATGCATTGTC 58.029 33.333 13.82 4.75 30.47 3.18
240 241 9.518906 GATTGAACATGTATAAATGCATTGTCA 57.481 29.630 13.82 10.15 30.47 3.58
253 254 7.908827 AATGCATTGTCATATTTTTCTTGCA 57.091 28.000 12.09 0.00 41.25 4.08
254 255 7.908827 ATGCATTGTCATATTTTTCTTGCAA 57.091 28.000 0.00 0.00 40.50 4.08
255 256 7.725818 TGCATTGTCATATTTTTCTTGCAAA 57.274 28.000 0.00 0.00 34.91 3.68
256 257 8.151141 TGCATTGTCATATTTTTCTTGCAAAA 57.849 26.923 0.00 0.00 34.91 2.44
257 258 8.618677 TGCATTGTCATATTTTTCTTGCAAAAA 58.381 25.926 0.00 0.00 34.91 1.94
338 339 9.916397 CATAGTCAAAATTATGTAACGAAGACC 57.084 33.333 0.00 0.00 0.00 3.85
339 340 7.972832 AGTCAAAATTATGTAACGAAGACCA 57.027 32.000 0.00 0.00 0.00 4.02
340 341 8.029642 AGTCAAAATTATGTAACGAAGACCAG 57.970 34.615 0.00 0.00 0.00 4.00
341 342 7.876068 AGTCAAAATTATGTAACGAAGACCAGA 59.124 33.333 0.00 0.00 0.00 3.86
342 343 8.500773 GTCAAAATTATGTAACGAAGACCAGAA 58.499 33.333 0.00 0.00 0.00 3.02
343 344 9.058174 TCAAAATTATGTAACGAAGACCAGAAA 57.942 29.630 0.00 0.00 0.00 2.52
344 345 9.672086 CAAAATTATGTAACGAAGACCAGAAAA 57.328 29.630 0.00 0.00 0.00 2.29
348 349 8.610248 TTATGTAACGAAGACCAGAAAAATCA 57.390 30.769 0.00 0.00 0.00 2.57
349 350 6.928979 TGTAACGAAGACCAGAAAAATCAA 57.071 33.333 0.00 0.00 0.00 2.57
350 351 7.323049 TGTAACGAAGACCAGAAAAATCAAA 57.677 32.000 0.00 0.00 0.00 2.69
351 352 7.936584 TGTAACGAAGACCAGAAAAATCAAAT 58.063 30.769 0.00 0.00 0.00 2.32
352 353 7.860373 TGTAACGAAGACCAGAAAAATCAAATG 59.140 33.333 0.00 0.00 0.00 2.32
353 354 6.633500 ACGAAGACCAGAAAAATCAAATGA 57.367 33.333 0.00 0.00 0.00 2.57
354 355 6.438763 ACGAAGACCAGAAAAATCAAATGAC 58.561 36.000 0.00 0.00 0.00 3.06
355 356 5.565259 CGAAGACCAGAAAAATCAAATGACG 59.435 40.000 0.00 0.00 0.00 4.35
356 357 4.798574 AGACCAGAAAAATCAAATGACGC 58.201 39.130 0.00 0.00 0.00 5.19
357 358 3.913089 ACCAGAAAAATCAAATGACGCC 58.087 40.909 0.00 0.00 0.00 5.68
358 359 3.573967 ACCAGAAAAATCAAATGACGCCT 59.426 39.130 0.00 0.00 0.00 5.52
359 360 4.039124 ACCAGAAAAATCAAATGACGCCTT 59.961 37.500 0.00 0.00 0.00 4.35
360 361 5.242838 ACCAGAAAAATCAAATGACGCCTTA 59.757 36.000 0.00 0.00 0.00 2.69
361 362 6.071391 ACCAGAAAAATCAAATGACGCCTTAT 60.071 34.615 0.00 0.00 0.00 1.73
362 363 6.813152 CCAGAAAAATCAAATGACGCCTTATT 59.187 34.615 0.00 0.00 0.00 1.40
363 364 7.331687 CCAGAAAAATCAAATGACGCCTTATTT 59.668 33.333 0.00 0.00 0.00 1.40
364 365 8.711457 CAGAAAAATCAAATGACGCCTTATTTT 58.289 29.630 0.00 0.00 0.00 1.82
365 366 9.271828 AGAAAAATCAAATGACGCCTTATTTTT 57.728 25.926 0.00 0.00 37.60 1.94
475 481 4.020662 AGCAAAAAGAACTGTGGAAAACCA 60.021 37.500 0.00 0.00 0.00 3.67
476 482 4.693095 GCAAAAAGAACTGTGGAAAACCAA 59.307 37.500 0.00 0.00 0.00 3.67
510 516 2.638556 AGTATGACGCGCCATAGATC 57.361 50.000 15.74 4.47 30.41 2.75
552 558 1.131883 GCACAATGGTTAGCTGCTCTG 59.868 52.381 4.91 0.00 0.00 3.35
562 568 4.443598 GGTTAGCTGCTCTGCTTATTACCT 60.444 45.833 4.91 0.00 43.74 3.08
566 572 1.134098 TGCTCTGCTTATTACCTGCCC 60.134 52.381 0.00 0.00 0.00 5.36
568 574 1.412710 CTCTGCTTATTACCTGCCCGA 59.587 52.381 0.00 0.00 0.00 5.14
569 575 1.834896 TCTGCTTATTACCTGCCCGAA 59.165 47.619 0.00 0.00 0.00 4.30
580 588 0.098728 CTGCCCGAAACGCAAATAGG 59.901 55.000 0.00 0.00 35.40 2.57
582 590 1.021968 GCCCGAAACGCAAATAGGAT 58.978 50.000 0.00 0.00 0.00 3.24
584 592 2.794631 GCCCGAAACGCAAATAGGATTG 60.795 50.000 0.00 0.00 0.00 2.67
585 593 2.223479 CCCGAAACGCAAATAGGATTGG 60.223 50.000 0.00 0.00 0.00 3.16
586 594 2.450160 CGAAACGCAAATAGGATTGGC 58.550 47.619 0.00 0.00 0.00 4.52
587 595 2.794631 CGAAACGCAAATAGGATTGGCC 60.795 50.000 0.00 0.00 0.00 5.36
588 596 1.111277 AACGCAAATAGGATTGGCCC 58.889 50.000 0.00 0.00 37.37 5.80
601 612 3.055719 GGCCCGTGTGATGTGTGG 61.056 66.667 0.00 0.00 0.00 4.17
607 618 2.270923 CCGTGTGATGTGTGGACATAG 58.729 52.381 0.00 0.00 43.22 2.23
628 639 2.818921 CCATTCACAAATTCAGGGGGA 58.181 47.619 0.00 0.00 0.00 4.81
630 641 3.564133 CCATTCACAAATTCAGGGGGAGA 60.564 47.826 0.00 0.00 0.00 3.71
631 642 3.893753 TTCACAAATTCAGGGGGAGAA 57.106 42.857 0.00 0.00 0.00 2.87
632 643 3.893753 TCACAAATTCAGGGGGAGAAA 57.106 42.857 0.00 0.00 0.00 2.52
633 644 3.766545 TCACAAATTCAGGGGGAGAAAG 58.233 45.455 0.00 0.00 0.00 2.62
638 649 1.267121 TTCAGGGGGAGAAAGTCGAG 58.733 55.000 0.00 0.00 0.00 4.04
651 662 1.000612 GTCGAGTCTCCCTCCCCTT 59.999 63.158 0.00 0.00 36.82 3.95
652 663 0.615261 GTCGAGTCTCCCTCCCCTTT 60.615 60.000 0.00 0.00 36.82 3.11
653 664 0.116541 TCGAGTCTCCCTCCCCTTTT 59.883 55.000 0.00 0.00 36.82 2.27
654 665 0.984995 CGAGTCTCCCTCCCCTTTTT 59.015 55.000 0.00 0.00 36.82 1.94
655 666 1.339151 CGAGTCTCCCTCCCCTTTTTG 60.339 57.143 0.00 0.00 36.82 2.44
660 671 2.284625 CCTCCCCTTTTTGCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
688 699 4.760047 TTCAGCGCGCTCCTTCCC 62.760 66.667 34.28 0.00 0.00 3.97
808 860 2.444706 CAGATCCTCCGCCTCCCA 60.445 66.667 0.00 0.00 0.00 4.37
815 867 4.316823 TCCGCCTCCCACCACTCT 62.317 66.667 0.00 0.00 0.00 3.24
822 874 1.352083 CTCCCACCACTCTTCTCCAA 58.648 55.000 0.00 0.00 0.00 3.53
857 923 2.359376 TTTCATCCCCTCCCTCTCAA 57.641 50.000 0.00 0.00 0.00 3.02
858 924 1.584724 TTCATCCCCTCCCTCTCAAC 58.415 55.000 0.00 0.00 0.00 3.18
859 925 0.326618 TCATCCCCTCCCTCTCAACC 60.327 60.000 0.00 0.00 0.00 3.77
860 926 1.004891 ATCCCCTCCCTCTCAACCC 59.995 63.158 0.00 0.00 0.00 4.11
936 1005 0.393077 CTCCAAACCAGACACCTCGT 59.607 55.000 0.00 0.00 0.00 4.18
961 1033 0.390860 AGGCATAGCTCATCACCGTC 59.609 55.000 0.00 0.00 0.00 4.79
1044 1126 1.153549 GAATCTGCCGCCTTCGACT 60.154 57.895 0.00 0.00 38.10 4.18
1046 1128 2.172483 AATCTGCCGCCTTCGACTGT 62.172 55.000 0.00 0.00 38.10 3.55
1049 1131 4.719369 GCCGCCTTCGACTGTCGT 62.719 66.667 27.16 0.00 41.35 4.34
1066 1148 4.090588 TCGTTGCCCGTCCCCATC 62.091 66.667 0.00 0.00 37.94 3.51
1068 1150 4.404098 GTTGCCCGTCCCCATCGT 62.404 66.667 0.00 0.00 0.00 3.73
1313 1410 7.316640 CGGAAGGAGTTTAGATCATAGTATGG 58.683 42.308 10.26 0.00 0.00 2.74
1314 1411 7.039644 CGGAAGGAGTTTAGATCATAGTATGGT 60.040 40.741 10.26 2.50 0.00 3.55
1315 1412 8.652290 GGAAGGAGTTTAGATCATAGTATGGTT 58.348 37.037 10.26 0.00 0.00 3.67
1329 1426 9.244292 TCATAGTATGGTTTAGATAGCTACAGG 57.756 37.037 10.26 0.00 0.00 4.00
1363 1460 6.978659 GGATTATACTTGTCATCTCGTTGTCA 59.021 38.462 0.00 0.00 0.00 3.58
1365 1462 7.812309 TTATACTTGTCATCTCGTTGTCAAG 57.188 36.000 15.11 15.11 43.69 3.02
1374 1471 3.305964 TCTCGTTGTCAAGTGATTCGTC 58.694 45.455 0.00 0.00 0.00 4.20
1381 1478 2.155155 GTCAAGTGATTCGTCGGACAAC 59.845 50.000 9.10 0.00 0.00 3.32
1403 1500 2.282887 GGTTGGATTGCCCCGTGT 60.283 61.111 0.00 0.00 0.00 4.49
1427 1524 4.315588 CCTCGTACCTCGTGGTCT 57.684 61.111 13.38 0.00 44.78 3.85
1450 1547 2.430921 GTCCCGCGTGACAGTCAG 60.431 66.667 17.08 0.00 35.29 3.51
1493 1590 0.324943 CCAGACCCTCGTCCATGTTT 59.675 55.000 0.00 0.00 40.12 2.83
1547 1644 2.147958 GTTGCCATGTCGGACAACTAA 58.852 47.619 15.72 5.75 43.12 2.24
1599 1696 4.763793 CCATCTCATGTCAAAAGTTCCAGT 59.236 41.667 0.00 0.00 0.00 4.00
1664 1761 7.715249 TCTGGTTTACTATAGTTGCCATGATTC 59.285 37.037 11.40 0.00 0.00 2.52
1735 1833 5.562298 ATGGTCTGGTTTACTACAGTTGT 57.438 39.130 0.00 0.00 36.17 3.32
1810 1909 2.778299 AGCGCTACAAAAAGACATGGA 58.222 42.857 8.99 0.00 0.00 3.41
1838 1939 5.591067 ACAACATGTTCGGGTAAAAAGAGAA 59.409 36.000 8.48 0.00 0.00 2.87
1858 1959 4.768968 AGAAAGTTGCCATCTGCTTACAAT 59.231 37.500 0.00 0.00 42.00 2.71
1868 1969 5.395657 CCATCTGCTTACAATCACACTAGGA 60.396 44.000 0.00 0.00 0.00 2.94
1918 2020 1.956477 GGCAACTGACATGTTTGAGGT 59.044 47.619 11.98 0.00 0.00 3.85
1919 2021 3.146066 GGCAACTGACATGTTTGAGGTA 58.854 45.455 11.98 0.00 0.00 3.08
1982 2095 1.881973 AGTTGCCATGTACACTGCAAG 59.118 47.619 25.83 3.43 43.66 4.01
2048 2161 3.518003 GGCGAGATGGCAAATGCT 58.482 55.556 5.25 0.00 44.08 3.79
2088 2201 1.944709 GTTAGTGGAAAGTGGCGTGTT 59.055 47.619 0.00 0.00 0.00 3.32
2117 2230 4.922026 GAACGCCCACACACCGGT 62.922 66.667 0.00 0.00 0.00 5.28
2127 2240 2.603776 ACACCGGTGAGGGAGTCC 60.604 66.667 40.21 0.00 46.96 3.85
2129 2242 2.283966 ACCGGTGAGGGAGTCCTG 60.284 66.667 6.12 0.00 45.05 3.86
2130 2243 3.077556 CCGGTGAGGGAGTCCTGG 61.078 72.222 9.58 0.00 45.05 4.45
2131 2244 2.037367 CGGTGAGGGAGTCCTGGA 59.963 66.667 9.58 0.00 45.05 3.86
2132 2245 1.381872 CGGTGAGGGAGTCCTGGAT 60.382 63.158 9.58 0.00 45.05 3.41
2133 2246 0.978146 CGGTGAGGGAGTCCTGGATT 60.978 60.000 9.58 0.00 45.05 3.01
2134 2247 1.688311 CGGTGAGGGAGTCCTGGATTA 60.688 57.143 9.58 0.00 45.05 1.75
2135 2248 2.043227 GGTGAGGGAGTCCTGGATTAG 58.957 57.143 9.58 0.00 45.05 1.73
2136 2249 2.043227 GTGAGGGAGTCCTGGATTAGG 58.957 57.143 9.58 0.00 45.05 2.69
2144 2257 2.855669 CCTGGATTAGGGGGTCCTC 58.144 63.158 0.00 0.00 43.66 3.71
2145 2258 1.122019 CCTGGATTAGGGGGTCCTCG 61.122 65.000 0.00 0.00 43.66 4.63
2146 2259 0.105658 CTGGATTAGGGGGTCCTCGA 60.106 60.000 0.00 0.00 43.66 4.04
2147 2260 0.340558 TGGATTAGGGGGTCCTCGAA 59.659 55.000 0.00 0.00 43.66 3.71
2148 2261 0.757512 GGATTAGGGGGTCCTCGAAC 59.242 60.000 0.00 0.00 43.66 3.95
2149 2262 1.492764 GATTAGGGGGTCCTCGAACA 58.507 55.000 0.00 0.00 43.66 3.18
2150 2263 1.413077 GATTAGGGGGTCCTCGAACAG 59.587 57.143 0.00 0.00 43.66 3.16
2151 2264 1.262640 TTAGGGGGTCCTCGAACAGC 61.263 60.000 0.00 0.00 43.66 4.40
2152 2265 4.097361 GGGGGTCCTCGAACAGCC 62.097 72.222 3.36 3.36 0.00 4.85
2153 2266 4.452733 GGGGTCCTCGAACAGCCG 62.453 72.222 5.62 0.00 0.00 5.52
2154 2267 4.452733 GGGTCCTCGAACAGCCGG 62.453 72.222 0.00 0.00 0.00 6.13
2155 2268 3.379445 GGTCCTCGAACAGCCGGA 61.379 66.667 5.05 0.00 0.00 5.14
2156 2269 2.126031 GTCCTCGAACAGCCGGAC 60.126 66.667 5.05 3.79 39.14 4.79
2157 2270 2.282958 TCCTCGAACAGCCGGACT 60.283 61.111 5.05 0.00 0.00 3.85
2158 2271 1.001764 TCCTCGAACAGCCGGACTA 60.002 57.895 5.05 0.00 0.00 2.59
2159 2272 0.395311 TCCTCGAACAGCCGGACTAT 60.395 55.000 5.05 0.00 0.00 2.12
2160 2273 1.134007 TCCTCGAACAGCCGGACTATA 60.134 52.381 5.05 0.00 0.00 1.31
2161 2274 1.887198 CCTCGAACAGCCGGACTATAT 59.113 52.381 5.05 0.00 0.00 0.86
2162 2275 3.079578 CCTCGAACAGCCGGACTATATA 58.920 50.000 5.05 0.00 0.00 0.86
2163 2276 3.119919 CCTCGAACAGCCGGACTATATAC 60.120 52.174 5.05 0.00 0.00 1.47
2164 2277 3.748083 TCGAACAGCCGGACTATATACT 58.252 45.455 5.05 0.00 0.00 2.12
2165 2278 4.139786 TCGAACAGCCGGACTATATACTT 58.860 43.478 5.05 0.00 0.00 2.24
2166 2279 4.581824 TCGAACAGCCGGACTATATACTTT 59.418 41.667 5.05 0.00 0.00 2.66
2167 2280 4.680110 CGAACAGCCGGACTATATACTTTG 59.320 45.833 5.05 0.00 0.00 2.77
2168 2281 4.602340 ACAGCCGGACTATATACTTTGG 57.398 45.455 5.05 0.00 0.00 3.28
2169 2282 3.244112 ACAGCCGGACTATATACTTTGGC 60.244 47.826 5.05 0.00 41.50 4.52
2170 2283 2.302157 AGCCGGACTATATACTTTGGCC 59.698 50.000 5.05 0.00 42.14 5.36
2171 2284 2.929592 GCCGGACTATATACTTTGGCCG 60.930 54.545 5.05 6.96 35.24 6.13
2172 2285 2.955614 CGGACTATATACTTTGGCCGG 58.044 52.381 6.17 0.00 34.29 6.13
2173 2286 2.559668 CGGACTATATACTTTGGCCGGA 59.440 50.000 5.05 0.00 34.29 5.14
2174 2287 3.613432 CGGACTATATACTTTGGCCGGAC 60.613 52.174 5.05 0.56 34.29 4.79
2175 2288 3.577415 GGACTATATACTTTGGCCGGACT 59.423 47.826 9.82 0.00 0.00 3.85
2176 2289 4.557205 GACTATATACTTTGGCCGGACTG 58.443 47.826 9.82 0.54 0.00 3.51
2177 2290 3.965347 ACTATATACTTTGGCCGGACTGT 59.035 43.478 9.82 7.70 0.00 3.55
2178 2291 3.926058 ATATACTTTGGCCGGACTGTT 57.074 42.857 9.82 0.00 0.00 3.16
2179 2292 1.821216 ATACTTTGGCCGGACTGTTG 58.179 50.000 9.82 0.00 0.00 3.33
2180 2293 0.250553 TACTTTGGCCGGACTGTTGG 60.251 55.000 9.82 0.00 0.00 3.77
2181 2294 1.228124 CTTTGGCCGGACTGTTGGA 60.228 57.895 9.82 0.00 0.00 3.53
2182 2295 1.515521 CTTTGGCCGGACTGTTGGAC 61.516 60.000 9.82 1.90 0.00 4.02
2183 2296 1.990160 TTTGGCCGGACTGTTGGACT 61.990 55.000 9.82 0.00 33.02 3.85
2184 2297 1.122632 TTGGCCGGACTGTTGGACTA 61.123 55.000 9.82 0.00 33.02 2.59
2185 2298 0.907704 TGGCCGGACTGTTGGACTAT 60.908 55.000 9.82 0.00 33.02 2.12
2186 2299 0.462047 GGCCGGACTGTTGGACTATG 60.462 60.000 5.05 0.00 0.00 2.23
2187 2300 0.535335 GCCGGACTGTTGGACTATGA 59.465 55.000 5.05 0.00 0.00 2.15
2188 2301 1.066430 GCCGGACTGTTGGACTATGAA 60.066 52.381 5.05 0.00 0.00 2.57
2189 2302 2.893637 CCGGACTGTTGGACTATGAAG 58.106 52.381 0.00 0.00 0.00 3.02
2190 2303 2.496070 CCGGACTGTTGGACTATGAAGA 59.504 50.000 0.00 0.00 0.00 2.87
2191 2304 3.133003 CCGGACTGTTGGACTATGAAGAT 59.867 47.826 0.00 0.00 0.00 2.40
2192 2305 4.341235 CCGGACTGTTGGACTATGAAGATA 59.659 45.833 0.00 0.00 0.00 1.98
2193 2306 5.282510 CGGACTGTTGGACTATGAAGATAC 58.717 45.833 0.00 0.00 0.00 2.24
2194 2307 5.163550 CGGACTGTTGGACTATGAAGATACA 60.164 44.000 0.00 0.00 0.00 2.29
2195 2308 6.627287 CGGACTGTTGGACTATGAAGATACAA 60.627 42.308 0.00 0.00 0.00 2.41
2196 2309 6.758886 GGACTGTTGGACTATGAAGATACAAG 59.241 42.308 0.00 0.00 0.00 3.16
2197 2310 7.363880 GGACTGTTGGACTATGAAGATACAAGA 60.364 40.741 0.00 0.00 0.00 3.02
2198 2311 8.083828 ACTGTTGGACTATGAAGATACAAGAT 57.916 34.615 0.00 0.00 0.00 2.40
2199 2312 8.543774 ACTGTTGGACTATGAAGATACAAGATT 58.456 33.333 0.00 0.00 0.00 2.40
2200 2313 8.722480 TGTTGGACTATGAAGATACAAGATTG 57.278 34.615 0.00 0.00 0.00 2.67
2201 2314 8.539544 TGTTGGACTATGAAGATACAAGATTGA 58.460 33.333 0.00 0.00 0.00 2.57
2202 2315 9.383519 GTTGGACTATGAAGATACAAGATTGAA 57.616 33.333 0.00 0.00 0.00 2.69
2203 2316 9.605275 TTGGACTATGAAGATACAAGATTGAAG 57.395 33.333 0.00 0.00 0.00 3.02
2204 2317 8.981659 TGGACTATGAAGATACAAGATTGAAGA 58.018 33.333 0.00 0.00 0.00 2.87
2205 2318 9.255304 GGACTATGAAGATACAAGATTGAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
2209 2322 7.818493 TGAAGATACAAGATTGAAGACTTCG 57.182 36.000 10.56 0.00 34.37 3.79
2210 2323 7.378966 TGAAGATACAAGATTGAAGACTTCGT 58.621 34.615 10.56 1.87 34.37 3.85
2211 2324 7.542477 TGAAGATACAAGATTGAAGACTTCGTC 59.458 37.037 10.56 10.67 34.37 4.20
2212 2325 6.334202 AGATACAAGATTGAAGACTTCGTCC 58.666 40.000 10.56 2.18 32.18 4.79
2213 2326 3.665190 ACAAGATTGAAGACTTCGTCCC 58.335 45.455 10.56 0.53 32.18 4.46
2214 2327 2.656560 AGATTGAAGACTTCGTCCCG 57.343 50.000 10.56 0.00 32.18 5.14
2215 2328 1.893801 AGATTGAAGACTTCGTCCCGT 59.106 47.619 10.56 0.00 32.18 5.28
2216 2329 1.993370 GATTGAAGACTTCGTCCCGTG 59.007 52.381 10.56 0.00 32.18 4.94
2217 2330 0.748450 TTGAAGACTTCGTCCCGTGT 59.252 50.000 10.56 0.00 32.18 4.49
2218 2331 0.313043 TGAAGACTTCGTCCCGTGTC 59.687 55.000 10.56 0.00 32.18 3.67
2219 2332 0.313043 GAAGACTTCGTCCCGTGTCA 59.687 55.000 0.00 0.00 35.45 3.58
2220 2333 0.314302 AAGACTTCGTCCCGTGTCAG 59.686 55.000 12.11 0.00 35.45 3.51
2221 2334 1.080705 GACTTCGTCCCGTGTCAGG 60.081 63.158 0.00 0.00 34.20 3.86
2228 2341 4.016706 CCCGTGTCAGGGTGGGAC 62.017 72.222 10.59 0.00 46.38 4.46
2229 2342 2.923035 CCGTGTCAGGGTGGGACT 60.923 66.667 3.24 0.00 36.26 3.85
2230 2343 2.516888 CCGTGTCAGGGTGGGACTT 61.517 63.158 3.24 0.00 36.26 3.01
2231 2344 1.301716 CGTGTCAGGGTGGGACTTG 60.302 63.158 0.00 0.00 36.26 3.16
2232 2345 1.754380 CGTGTCAGGGTGGGACTTGA 61.754 60.000 0.00 0.00 36.26 3.02
2233 2346 0.693049 GTGTCAGGGTGGGACTTGAT 59.307 55.000 0.00 0.00 36.26 2.57
2234 2347 1.906574 GTGTCAGGGTGGGACTTGATA 59.093 52.381 0.00 0.00 36.26 2.15
2235 2348 1.906574 TGTCAGGGTGGGACTTGATAC 59.093 52.381 0.00 0.00 36.26 2.24
2236 2349 1.134788 GTCAGGGTGGGACTTGATACG 60.135 57.143 0.00 0.00 32.54 3.06
2237 2350 0.902531 CAGGGTGGGACTTGATACGT 59.097 55.000 0.00 0.00 0.00 3.57
2238 2351 1.134788 CAGGGTGGGACTTGATACGTC 60.135 57.143 0.00 0.00 0.00 4.34
2239 2352 1.192428 GGGTGGGACTTGATACGTCT 58.808 55.000 0.00 0.00 0.00 4.18
2240 2353 1.136500 GGGTGGGACTTGATACGTCTC 59.864 57.143 0.00 0.00 32.48 3.36
2241 2354 1.136500 GGTGGGACTTGATACGTCTCC 59.864 57.143 0.00 0.00 30.77 3.71
2242 2355 1.822990 GTGGGACTTGATACGTCTCCA 59.177 52.381 0.00 0.00 30.77 3.86
2243 2356 2.232941 GTGGGACTTGATACGTCTCCAA 59.767 50.000 0.00 0.00 35.21 3.53
2244 2357 2.232941 TGGGACTTGATACGTCTCCAAC 59.767 50.000 0.00 0.00 32.52 3.77
2258 2371 6.270096 CGTCTCCAACGTATCTATTTTTCC 57.730 41.667 0.00 0.00 46.42 3.13
2259 2372 5.808540 CGTCTCCAACGTATCTATTTTTCCA 59.191 40.000 0.00 0.00 46.42 3.53
2260 2373 6.311935 CGTCTCCAACGTATCTATTTTTCCAA 59.688 38.462 0.00 0.00 46.42 3.53
2261 2374 7.148540 CGTCTCCAACGTATCTATTTTTCCAAA 60.149 37.037 0.00 0.00 46.42 3.28
2262 2375 7.961283 GTCTCCAACGTATCTATTTTTCCAAAC 59.039 37.037 0.00 0.00 0.00 2.93
2263 2376 7.662258 TCTCCAACGTATCTATTTTTCCAAACA 59.338 33.333 0.00 0.00 0.00 2.83
2264 2377 7.586747 TCCAACGTATCTATTTTTCCAAACAC 58.413 34.615 0.00 0.00 0.00 3.32
2265 2378 7.446013 TCCAACGTATCTATTTTTCCAAACACT 59.554 33.333 0.00 0.00 0.00 3.55
2266 2379 8.079809 CCAACGTATCTATTTTTCCAAACACTT 58.920 33.333 0.00 0.00 0.00 3.16
2267 2380 9.458374 CAACGTATCTATTTTTCCAAACACTTT 57.542 29.630 0.00 0.00 0.00 2.66
2273 2386 8.541899 TCTATTTTTCCAAACACTTTTACCCT 57.458 30.769 0.00 0.00 0.00 4.34
2274 2387 8.983789 TCTATTTTTCCAAACACTTTTACCCTT 58.016 29.630 0.00 0.00 0.00 3.95
2275 2388 7.857734 ATTTTTCCAAACACTTTTACCCTTG 57.142 32.000 0.00 0.00 0.00 3.61
2276 2389 6.361768 TTTTCCAAACACTTTTACCCTTGT 57.638 33.333 0.00 0.00 0.00 3.16
2277 2390 6.361768 TTTCCAAACACTTTTACCCTTGTT 57.638 33.333 0.00 0.00 33.59 2.83
2278 2391 6.361768 TTCCAAACACTTTTACCCTTGTTT 57.638 33.333 0.00 0.00 41.69 2.83
2279 2392 6.361768 TCCAAACACTTTTACCCTTGTTTT 57.638 33.333 0.00 0.00 39.56 2.43
2280 2393 6.166982 TCCAAACACTTTTACCCTTGTTTTG 58.833 36.000 0.00 0.00 39.56 2.44
2281 2394 5.352846 CCAAACACTTTTACCCTTGTTTTGG 59.647 40.000 0.00 0.00 39.56 3.28
2282 2395 6.166982 CAAACACTTTTACCCTTGTTTTGGA 58.833 36.000 0.00 0.00 39.56 3.53
2283 2396 5.333299 ACACTTTTACCCTTGTTTTGGAC 57.667 39.130 0.00 0.00 0.00 4.02
2284 2397 5.020795 ACACTTTTACCCTTGTTTTGGACT 58.979 37.500 0.00 0.00 0.00 3.85
2285 2398 5.126545 ACACTTTTACCCTTGTTTTGGACTC 59.873 40.000 0.00 0.00 0.00 3.36
2286 2399 5.359860 CACTTTTACCCTTGTTTTGGACTCT 59.640 40.000 0.00 0.00 0.00 3.24
2287 2400 6.544564 CACTTTTACCCTTGTTTTGGACTCTA 59.455 38.462 0.00 0.00 0.00 2.43
2288 2401 7.067737 CACTTTTACCCTTGTTTTGGACTCTAA 59.932 37.037 0.00 0.00 0.00 2.10
2289 2402 6.947644 TTTACCCTTGTTTTGGACTCTAAC 57.052 37.500 0.00 0.00 0.00 2.34
2290 2403 4.790718 ACCCTTGTTTTGGACTCTAACT 57.209 40.909 0.00 0.00 0.00 2.24
2291 2404 5.125367 ACCCTTGTTTTGGACTCTAACTT 57.875 39.130 0.00 0.00 0.00 2.66
2292 2405 4.887655 ACCCTTGTTTTGGACTCTAACTTG 59.112 41.667 0.00 0.00 0.00 3.16
2293 2406 4.261614 CCCTTGTTTTGGACTCTAACTTGC 60.262 45.833 0.00 0.00 0.00 4.01
2294 2407 4.338118 CCTTGTTTTGGACTCTAACTTGCA 59.662 41.667 0.00 0.00 0.00 4.08
2295 2408 5.010012 CCTTGTTTTGGACTCTAACTTGCAT 59.990 40.000 0.00 0.00 0.00 3.96
2296 2409 5.437289 TGTTTTGGACTCTAACTTGCATG 57.563 39.130 0.00 0.00 0.00 4.06
2297 2410 5.129634 TGTTTTGGACTCTAACTTGCATGA 58.870 37.500 6.60 0.00 0.00 3.07
2298 2411 5.769662 TGTTTTGGACTCTAACTTGCATGAT 59.230 36.000 6.60 0.00 0.00 2.45
2299 2412 6.265196 TGTTTTGGACTCTAACTTGCATGATT 59.735 34.615 6.60 0.30 0.00 2.57
2300 2413 6.899393 TTTGGACTCTAACTTGCATGATTT 57.101 33.333 6.60 0.00 0.00 2.17
2301 2414 5.885230 TGGACTCTAACTTGCATGATTTG 57.115 39.130 6.60 0.00 0.00 2.32
2302 2415 5.559770 TGGACTCTAACTTGCATGATTTGA 58.440 37.500 6.60 3.51 0.00 2.69
2303 2416 6.003326 TGGACTCTAACTTGCATGATTTGAA 58.997 36.000 6.60 0.00 0.00 2.69
2304 2417 6.660521 TGGACTCTAACTTGCATGATTTGAAT 59.339 34.615 6.60 0.00 0.00 2.57
2305 2418 6.971184 GGACTCTAACTTGCATGATTTGAATG 59.029 38.462 6.60 0.00 0.00 2.67
2306 2419 7.148188 GGACTCTAACTTGCATGATTTGAATGA 60.148 37.037 6.60 0.00 0.00 2.57
2307 2420 8.114331 ACTCTAACTTGCATGATTTGAATGAA 57.886 30.769 6.60 0.00 0.00 2.57
2308 2421 8.579006 ACTCTAACTTGCATGATTTGAATGAAA 58.421 29.630 6.60 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.474920 CACATTTAACATTTTCTAAAGGCTTGA 57.525 29.630 0.00 0.00 0.00 3.02
16 17 9.260002 ACACATTTAACATTTTCTAAAGGCTTG 57.740 29.630 0.00 0.00 0.00 4.01
111 112 8.803235 GGAAGAAGGGAGTACATTTTTACATTT 58.197 33.333 0.00 0.00 0.00 2.32
112 113 7.396339 GGGAAGAAGGGAGTACATTTTTACATT 59.604 37.037 0.00 0.00 0.00 2.71
113 114 6.890268 GGGAAGAAGGGAGTACATTTTTACAT 59.110 38.462 0.00 0.00 0.00 2.29
114 115 6.183361 TGGGAAGAAGGGAGTACATTTTTACA 60.183 38.462 0.00 0.00 0.00 2.41
115 116 6.243148 TGGGAAGAAGGGAGTACATTTTTAC 58.757 40.000 0.00 0.00 0.00 2.01
116 117 6.457159 TGGGAAGAAGGGAGTACATTTTTA 57.543 37.500 0.00 0.00 0.00 1.52
117 118 5.333566 TGGGAAGAAGGGAGTACATTTTT 57.666 39.130 0.00 0.00 0.00 1.94
118 119 5.333566 TTGGGAAGAAGGGAGTACATTTT 57.666 39.130 0.00 0.00 0.00 1.82
119 120 5.333566 TTTGGGAAGAAGGGAGTACATTT 57.666 39.130 0.00 0.00 0.00 2.32
120 121 5.333566 TTTTGGGAAGAAGGGAGTACATT 57.666 39.130 0.00 0.00 0.00 2.71
121 122 5.536497 ATTTTGGGAAGAAGGGAGTACAT 57.464 39.130 0.00 0.00 0.00 2.29
122 123 6.652205 ATATTTTGGGAAGAAGGGAGTACA 57.348 37.500 0.00 0.00 0.00 2.90
123 124 8.491958 TCTTATATTTTGGGAAGAAGGGAGTAC 58.508 37.037 0.00 0.00 0.00 2.73
124 125 8.632731 TCTTATATTTTGGGAAGAAGGGAGTA 57.367 34.615 0.00 0.00 0.00 2.59
125 126 7.525158 TCTTATATTTTGGGAAGAAGGGAGT 57.475 36.000 0.00 0.00 0.00 3.85
126 127 8.001292 ACATCTTATATTTTGGGAAGAAGGGAG 58.999 37.037 0.00 0.00 32.00 4.30
127 128 7.779798 CACATCTTATATTTTGGGAAGAAGGGA 59.220 37.037 0.00 0.00 32.00 4.20
128 129 7.779798 TCACATCTTATATTTTGGGAAGAAGGG 59.220 37.037 0.00 0.00 32.00 3.95
129 130 8.752005 TCACATCTTATATTTTGGGAAGAAGG 57.248 34.615 0.00 0.00 32.00 3.46
132 133 9.919416 TCAATCACATCTTATATTTTGGGAAGA 57.081 29.630 0.00 0.00 32.73 2.87
133 134 9.956720 GTCAATCACATCTTATATTTTGGGAAG 57.043 33.333 0.00 0.00 0.00 3.46
134 135 9.699410 AGTCAATCACATCTTATATTTTGGGAA 57.301 29.630 0.00 0.00 0.00 3.97
135 136 9.699410 AAGTCAATCACATCTTATATTTTGGGA 57.301 29.630 0.00 0.00 0.00 4.37
140 141 9.793252 GTGCAAAGTCAATCACATCTTATATTT 57.207 29.630 0.00 0.00 0.00 1.40
141 142 8.124823 CGTGCAAAGTCAATCACATCTTATATT 58.875 33.333 0.00 0.00 0.00 1.28
142 143 7.254898 CCGTGCAAAGTCAATCACATCTTATAT 60.255 37.037 0.00 0.00 0.00 0.86
143 144 6.037062 CCGTGCAAAGTCAATCACATCTTATA 59.963 38.462 0.00 0.00 0.00 0.98
144 145 5.163723 CCGTGCAAAGTCAATCACATCTTAT 60.164 40.000 0.00 0.00 0.00 1.73
145 146 4.154015 CCGTGCAAAGTCAATCACATCTTA 59.846 41.667 0.00 0.00 0.00 2.10
146 147 3.058016 CCGTGCAAAGTCAATCACATCTT 60.058 43.478 0.00 0.00 0.00 2.40
147 148 2.485426 CCGTGCAAAGTCAATCACATCT 59.515 45.455 0.00 0.00 0.00 2.90
148 149 2.226437 ACCGTGCAAAGTCAATCACATC 59.774 45.455 0.00 0.00 0.00 3.06
149 150 2.226437 GACCGTGCAAAGTCAATCACAT 59.774 45.455 11.50 0.00 33.08 3.21
150 151 1.601903 GACCGTGCAAAGTCAATCACA 59.398 47.619 11.50 0.00 33.08 3.58
151 152 1.873591 AGACCGTGCAAAGTCAATCAC 59.126 47.619 17.12 0.00 35.38 3.06
152 153 2.254546 AGACCGTGCAAAGTCAATCA 57.745 45.000 17.12 0.00 35.38 2.57
153 154 3.003275 TCAAAGACCGTGCAAAGTCAATC 59.997 43.478 17.12 0.00 35.38 2.67
154 155 2.948979 TCAAAGACCGTGCAAAGTCAAT 59.051 40.909 17.12 5.35 35.38 2.57
155 156 2.360844 TCAAAGACCGTGCAAAGTCAA 58.639 42.857 17.12 0.64 35.38 3.18
156 157 2.031258 TCAAAGACCGTGCAAAGTCA 57.969 45.000 17.12 0.00 35.38 3.41
157 158 2.918131 GCATCAAAGACCGTGCAAAGTC 60.918 50.000 8.92 8.92 37.52 3.01
158 159 1.001378 GCATCAAAGACCGTGCAAAGT 60.001 47.619 0.00 0.00 37.52 2.66
159 160 1.001487 TGCATCAAAGACCGTGCAAAG 60.001 47.619 0.00 0.00 43.83 2.77
160 161 1.028130 TGCATCAAAGACCGTGCAAA 58.972 45.000 0.00 0.00 43.83 3.68
161 162 2.712984 TGCATCAAAGACCGTGCAA 58.287 47.368 0.00 0.00 43.83 4.08
162 163 4.471761 TGCATCAAAGACCGTGCA 57.528 50.000 0.00 0.00 44.50 4.57
163 164 0.804364 TCATGCATCAAAGACCGTGC 59.196 50.000 0.00 0.00 38.05 5.34
164 165 2.079158 AGTCATGCATCAAAGACCGTG 58.921 47.619 10.40 0.00 0.00 4.94
165 166 2.479566 AGTCATGCATCAAAGACCGT 57.520 45.000 10.40 0.00 0.00 4.83
166 167 3.189080 TCAAAGTCATGCATCAAAGACCG 59.811 43.478 10.40 2.15 0.00 4.79
167 168 4.771590 TCAAAGTCATGCATCAAAGACC 57.228 40.909 10.40 0.00 0.00 3.85
168 169 5.400485 GTGTTCAAAGTCATGCATCAAAGAC 59.600 40.000 0.00 0.88 0.00 3.01
169 170 5.300034 AGTGTTCAAAGTCATGCATCAAAGA 59.700 36.000 0.00 0.00 0.00 2.52
170 171 5.526115 AGTGTTCAAAGTCATGCATCAAAG 58.474 37.500 0.00 0.00 0.00 2.77
171 172 5.518848 AGTGTTCAAAGTCATGCATCAAA 57.481 34.783 0.00 0.00 0.00 2.69
172 173 6.631971 TTAGTGTTCAAAGTCATGCATCAA 57.368 33.333 0.00 0.00 0.00 2.57
173 174 6.822667 ATTAGTGTTCAAAGTCATGCATCA 57.177 33.333 0.00 0.00 0.00 3.07
211 212 9.483916 CAATGCATTTATACATGTTCAATCCAT 57.516 29.630 9.83 0.00 0.00 3.41
212 213 8.476447 ACAATGCATTTATACATGTTCAATCCA 58.524 29.630 9.83 0.00 0.00 3.41
213 214 8.876275 ACAATGCATTTATACATGTTCAATCC 57.124 30.769 9.83 0.00 0.00 3.01
214 215 9.518906 TGACAATGCATTTATACATGTTCAATC 57.481 29.630 9.83 0.00 0.00 2.67
227 228 9.433153 TGCAAGAAAAATATGACAATGCATTTA 57.567 25.926 9.83 0.00 36.46 1.40
228 229 8.325421 TGCAAGAAAAATATGACAATGCATTT 57.675 26.923 9.83 1.29 36.46 2.32
229 230 7.908827 TGCAAGAAAAATATGACAATGCATT 57.091 28.000 5.99 5.99 36.46 3.56
230 231 7.908827 TTGCAAGAAAAATATGACAATGCAT 57.091 28.000 0.00 0.00 40.50 3.96
231 232 7.725818 TTTGCAAGAAAAATATGACAATGCA 57.274 28.000 0.00 0.00 39.28 3.96
312 313 9.916397 GGTCTTCGTTACATAATTTTGACTATG 57.084 33.333 2.69 0.00 0.00 2.23
313 314 9.661563 TGGTCTTCGTTACATAATTTTGACTAT 57.338 29.630 2.69 0.00 0.00 2.12
314 315 9.146984 CTGGTCTTCGTTACATAATTTTGACTA 57.853 33.333 2.69 0.00 0.00 2.59
315 316 7.876068 TCTGGTCTTCGTTACATAATTTTGACT 59.124 33.333 2.69 0.00 0.00 3.41
316 317 8.025243 TCTGGTCTTCGTTACATAATTTTGAC 57.975 34.615 2.69 0.00 0.00 3.18
317 318 8.610248 TTCTGGTCTTCGTTACATAATTTTGA 57.390 30.769 2.69 0.00 0.00 2.69
318 319 9.672086 TTTTCTGGTCTTCGTTACATAATTTTG 57.328 29.630 0.00 0.00 0.00 2.44
322 323 9.226606 TGATTTTTCTGGTCTTCGTTACATAAT 57.773 29.630 0.00 0.00 0.00 1.28
323 324 8.610248 TGATTTTTCTGGTCTTCGTTACATAA 57.390 30.769 0.00 0.00 0.00 1.90
324 325 8.610248 TTGATTTTTCTGGTCTTCGTTACATA 57.390 30.769 0.00 0.00 0.00 2.29
325 326 7.504924 TTGATTTTTCTGGTCTTCGTTACAT 57.495 32.000 0.00 0.00 0.00 2.29
326 327 6.928979 TTGATTTTTCTGGTCTTCGTTACA 57.071 33.333 0.00 0.00 0.00 2.41
327 328 8.073768 TCATTTGATTTTTCTGGTCTTCGTTAC 58.926 33.333 0.00 0.00 0.00 2.50
328 329 8.073768 GTCATTTGATTTTTCTGGTCTTCGTTA 58.926 33.333 0.00 0.00 0.00 3.18
329 330 6.918022 GTCATTTGATTTTTCTGGTCTTCGTT 59.082 34.615 0.00 0.00 0.00 3.85
330 331 6.438763 GTCATTTGATTTTTCTGGTCTTCGT 58.561 36.000 0.00 0.00 0.00 3.85
331 332 5.565259 CGTCATTTGATTTTTCTGGTCTTCG 59.435 40.000 0.00 0.00 0.00 3.79
332 333 5.343325 GCGTCATTTGATTTTTCTGGTCTTC 59.657 40.000 0.00 0.00 0.00 2.87
333 334 5.222631 GCGTCATTTGATTTTTCTGGTCTT 58.777 37.500 0.00 0.00 0.00 3.01
334 335 4.321230 GGCGTCATTTGATTTTTCTGGTCT 60.321 41.667 0.00 0.00 0.00 3.85
335 336 3.920412 GGCGTCATTTGATTTTTCTGGTC 59.080 43.478 0.00 0.00 0.00 4.02
336 337 3.573967 AGGCGTCATTTGATTTTTCTGGT 59.426 39.130 0.00 0.00 0.00 4.00
337 338 4.178545 AGGCGTCATTTGATTTTTCTGG 57.821 40.909 0.00 0.00 0.00 3.86
338 339 7.816945 AATAAGGCGTCATTTGATTTTTCTG 57.183 32.000 0.00 0.00 0.00 3.02
339 340 8.831715 AAAATAAGGCGTCATTTGATTTTTCT 57.168 26.923 0.00 0.00 0.00 2.52
362 363 6.683791 TCTTATATACTCCCCCTTCCCAAAAA 59.316 38.462 0.00 0.00 0.00 1.94
363 364 6.221850 TCTTATATACTCCCCCTTCCCAAAA 58.778 40.000 0.00 0.00 0.00 2.44
364 365 5.806259 TCTTATATACTCCCCCTTCCCAAA 58.194 41.667 0.00 0.00 0.00 3.28
365 366 5.443277 TCTTATATACTCCCCCTTCCCAA 57.557 43.478 0.00 0.00 0.00 4.12
366 367 5.443277 TTCTTATATACTCCCCCTTCCCA 57.557 43.478 0.00 0.00 0.00 4.37
367 368 6.466904 GGTTTTCTTATATACTCCCCCTTCCC 60.467 46.154 0.00 0.00 0.00 3.97
368 369 6.466904 GGGTTTTCTTATATACTCCCCCTTCC 60.467 46.154 0.00 0.00 0.00 3.46
369 370 6.102174 TGGGTTTTCTTATATACTCCCCCTTC 59.898 42.308 0.00 0.00 33.40 3.46
370 371 5.980640 TGGGTTTTCTTATATACTCCCCCTT 59.019 40.000 0.00 0.00 33.40 3.95
371 372 5.554443 TGGGTTTTCTTATATACTCCCCCT 58.446 41.667 0.00 0.00 33.40 4.79
372 373 5.917545 TGGGTTTTCTTATATACTCCCCC 57.082 43.478 0.00 0.00 33.40 5.40
373 374 8.777578 AAAATGGGTTTTCTTATATACTCCCC 57.222 34.615 0.00 0.00 32.14 4.81
453 454 4.249661 TGGTTTTCCACAGTTCTTTTTGC 58.750 39.130 0.00 0.00 46.22 3.68
468 474 0.593008 GGCGACACGGTTTGGTTTTC 60.593 55.000 0.00 0.00 0.00 2.29
475 481 0.390124 TACTTGAGGCGACACGGTTT 59.610 50.000 0.00 0.00 0.00 3.27
476 482 0.606604 ATACTTGAGGCGACACGGTT 59.393 50.000 0.00 0.00 0.00 4.44
510 516 2.109463 CGTGTCGGACGTATTGATGAG 58.891 52.381 3.34 0.00 43.50 2.90
552 558 1.329599 CGTTTCGGGCAGGTAATAAGC 59.670 52.381 0.00 0.00 0.00 3.09
562 568 0.321741 TCCTATTTGCGTTTCGGGCA 60.322 50.000 0.00 0.00 38.93 5.36
566 572 2.450160 GCCAATCCTATTTGCGTTTCG 58.550 47.619 0.00 0.00 0.00 3.46
568 574 1.480545 GGGCCAATCCTATTTGCGTTT 59.519 47.619 4.39 0.00 34.39 3.60
569 575 1.111277 GGGCCAATCCTATTTGCGTT 58.889 50.000 4.39 0.00 34.39 4.84
580 588 0.960364 ACACATCACACGGGCCAATC 60.960 55.000 4.39 0.00 0.00 2.67
582 590 1.896183 CACACATCACACGGGCCAA 60.896 57.895 4.39 0.00 0.00 4.52
584 592 3.055719 CCACACATCACACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
585 593 2.031919 TCCACACATCACACGGGC 59.968 61.111 0.00 0.00 0.00 6.13
586 594 0.321564 ATGTCCACACATCACACGGG 60.322 55.000 0.00 0.00 39.15 5.28
587 595 2.270923 CTATGTCCACACATCACACGG 58.729 52.381 0.00 0.00 42.66 4.94
588 596 1.660607 GCTATGTCCACACATCACACG 59.339 52.381 0.00 0.00 42.66 4.49
601 612 5.450965 CCCTGAATTTGTGAATGGCTATGTC 60.451 44.000 0.00 0.00 0.00 3.06
607 618 1.207811 CCCCCTGAATTTGTGAATGGC 59.792 52.381 0.00 0.00 0.00 4.40
638 649 0.612174 GGCAAAAAGGGGAGGGAGAC 60.612 60.000 0.00 0.00 0.00 3.36
660 671 2.016165 GCGCTGAAAACTTTGGCGG 61.016 57.895 0.00 1.05 44.92 6.13
707 718 2.961531 TGTTTGGAGGAAATCGGGAA 57.038 45.000 0.00 0.00 0.00 3.97
785 804 0.693049 AGGCGGAGGATCTGTGTTTT 59.307 50.000 0.00 0.00 45.47 2.43
808 860 5.130477 TGAGTTTTAGTTGGAGAAGAGTGGT 59.870 40.000 0.00 0.00 0.00 4.16
822 874 7.730332 AGGGGATGAAAAGATTTGAGTTTTAGT 59.270 33.333 0.00 0.00 0.00 2.24
892 959 2.940514 TGGGACTGGGTAGATCTTCA 57.059 50.000 0.00 0.00 0.00 3.02
901 968 1.566298 GGAGCTTGATGGGACTGGGT 61.566 60.000 0.00 0.00 0.00 4.51
936 1005 0.891373 GATGAGCTATGCCTAGGCGA 59.109 55.000 28.28 17.77 45.51 5.54
1062 1144 0.817654 TCCTGACAGCTACACGATGG 59.182 55.000 0.00 0.00 32.00 3.51
1066 1148 4.485554 GCTCCTGACAGCTACACG 57.514 61.111 0.00 0.00 36.38 4.49
1085 1170 0.886490 CCCGAGTTGCTTCAGCTTGT 60.886 55.000 0.00 0.00 42.66 3.16
1304 1401 9.026121 ACCTGTAGCTATCTAAACCATACTATG 57.974 37.037 0.00 0.00 0.00 2.23
1305 1402 9.603189 AACCTGTAGCTATCTAAACCATACTAT 57.397 33.333 0.00 0.00 0.00 2.12
1306 1403 8.857098 CAACCTGTAGCTATCTAAACCATACTA 58.143 37.037 0.00 0.00 0.00 1.82
1307 1404 7.344871 ACAACCTGTAGCTATCTAAACCATACT 59.655 37.037 0.00 0.00 0.00 2.12
1308 1405 7.498443 ACAACCTGTAGCTATCTAAACCATAC 58.502 38.462 0.00 0.00 0.00 2.39
1309 1406 7.670605 ACAACCTGTAGCTATCTAAACCATA 57.329 36.000 0.00 0.00 0.00 2.74
1310 1407 6.561519 ACAACCTGTAGCTATCTAAACCAT 57.438 37.500 0.00 0.00 0.00 3.55
1312 1409 9.640963 CATATACAACCTGTAGCTATCTAAACC 57.359 37.037 0.00 0.00 36.14 3.27
1313 1410 9.640963 CCATATACAACCTGTAGCTATCTAAAC 57.359 37.037 0.00 0.00 36.14 2.01
1314 1411 9.596308 TCCATATACAACCTGTAGCTATCTAAA 57.404 33.333 0.00 0.00 36.14 1.85
1315 1412 9.769677 ATCCATATACAACCTGTAGCTATCTAA 57.230 33.333 0.00 0.00 36.14 2.10
1316 1413 9.769677 AATCCATATACAACCTGTAGCTATCTA 57.230 33.333 0.00 0.00 36.14 1.98
1317 1414 8.671987 AATCCATATACAACCTGTAGCTATCT 57.328 34.615 0.00 0.00 36.14 1.98
1321 1418 9.548631 AGTATAATCCATATACAACCTGTAGCT 57.451 33.333 8.00 0.00 45.96 3.32
1349 1446 4.201532 CGAATCACTTGACAACGAGATGAC 60.202 45.833 0.00 0.00 0.00 3.06
1363 1460 2.519377 TGTTGTCCGACGAATCACTT 57.481 45.000 0.00 0.00 0.00 3.16
1365 1462 3.479006 CAAATGTTGTCCGACGAATCAC 58.521 45.455 0.00 0.00 0.00 3.06
1381 1478 0.108233 CGGGGCAATCCAACCAAATG 60.108 55.000 0.00 0.00 37.22 2.32
1403 1500 2.044555 CGAGGTACGAGGCCTGACA 61.045 63.158 12.00 0.00 45.77 3.58
1458 1555 2.359850 GGACCATGGCAACTGCGA 60.360 61.111 13.04 0.00 43.26 5.10
1493 1590 2.692557 ACATGGCAACTGCAGTTAAACA 59.307 40.909 30.67 26.45 44.36 2.83
1547 1644 1.069049 GTTGAGCAACCATGGCAACTT 59.931 47.619 19.25 2.72 36.73 2.66
1664 1761 3.021269 GGCAAACCCCTAAAGTTTTCG 57.979 47.619 0.00 0.00 35.28 3.46
1685 1782 3.679083 GCAACTGCCTAGTGTTAGTAGGG 60.679 52.174 10.79 0.00 40.81 3.53
1735 1833 7.523709 GCAACTCCTAAGGTTTTCAAATCATGA 60.524 37.037 0.00 0.00 35.85 3.07
1810 1909 7.097834 TCTTTTTACCCGAACATGTTGTTTTT 58.902 30.769 17.58 0.00 41.28 1.94
1858 1959 2.165641 CACGGCAACTATCCTAGTGTGA 59.834 50.000 0.00 0.00 39.39 3.58
1868 1969 1.484653 TGCAGGATACACGGCAACTAT 59.515 47.619 0.00 0.00 37.44 2.12
1882 1983 3.577848 AGTTGCCATGTATTTTTGCAGGA 59.422 39.130 0.00 0.00 32.88 3.86
1982 2095 0.318955 GTTGCCACTTGCCATGTGTC 60.319 55.000 9.55 0.00 40.16 3.67
2005 2118 1.468985 CTCGTCTCATCTCCCACACT 58.531 55.000 0.00 0.00 0.00 3.55
2048 2161 1.152984 CACAAGGGCTGGTGTGTGA 60.153 57.895 0.00 0.00 43.23 3.58
2126 2239 1.122019 CGAGGACCCCCTAATCCAGG 61.122 65.000 0.00 0.00 44.53 4.45
2127 2240 0.105658 TCGAGGACCCCCTAATCCAG 60.106 60.000 0.00 0.00 44.53 3.86
2128 2241 0.340558 TTCGAGGACCCCCTAATCCA 59.659 55.000 0.00 0.00 44.53 3.41
2129 2242 0.757512 GTTCGAGGACCCCCTAATCC 59.242 60.000 0.00 0.00 44.53 3.01
2130 2243 1.413077 CTGTTCGAGGACCCCCTAATC 59.587 57.143 0.00 0.00 44.53 1.75
2131 2244 1.497161 CTGTTCGAGGACCCCCTAAT 58.503 55.000 0.00 0.00 44.53 1.73
2132 2245 1.262640 GCTGTTCGAGGACCCCCTAA 61.263 60.000 0.00 0.00 44.53 2.69
2133 2246 1.684734 GCTGTTCGAGGACCCCCTA 60.685 63.158 0.00 0.00 44.53 3.53
2135 2248 4.097361 GGCTGTTCGAGGACCCCC 62.097 72.222 0.00 0.00 0.00 5.40
2136 2249 4.452733 CGGCTGTTCGAGGACCCC 62.453 72.222 0.00 0.00 0.00 4.95
2137 2250 4.452733 CCGGCTGTTCGAGGACCC 62.453 72.222 0.00 0.00 0.00 4.46
2138 2251 3.379445 TCCGGCTGTTCGAGGACC 61.379 66.667 0.00 0.00 0.00 4.46
2139 2252 2.126031 GTCCGGCTGTTCGAGGAC 60.126 66.667 0.00 3.79 45.07 3.85
2140 2253 0.395311 ATAGTCCGGCTGTTCGAGGA 60.395 55.000 0.00 0.00 0.00 3.71
2141 2254 1.315690 TATAGTCCGGCTGTTCGAGG 58.684 55.000 0.00 0.00 0.00 4.63
2142 2255 3.752222 AGTATATAGTCCGGCTGTTCGAG 59.248 47.826 0.00 0.00 0.00 4.04
2143 2256 3.748083 AGTATATAGTCCGGCTGTTCGA 58.252 45.455 0.00 0.00 0.00 3.71
2144 2257 4.500603 AAGTATATAGTCCGGCTGTTCG 57.499 45.455 0.00 0.00 0.00 3.95
2145 2258 4.989168 CCAAAGTATATAGTCCGGCTGTTC 59.011 45.833 0.00 0.00 0.00 3.18
2146 2259 4.742743 GCCAAAGTATATAGTCCGGCTGTT 60.743 45.833 17.30 0.00 35.39 3.16
2147 2260 3.244112 GCCAAAGTATATAGTCCGGCTGT 60.244 47.826 17.30 0.00 35.39 4.40
2148 2261 3.326747 GCCAAAGTATATAGTCCGGCTG 58.673 50.000 17.30 0.00 35.39 4.85
2149 2262 2.302157 GGCCAAAGTATATAGTCCGGCT 59.698 50.000 21.14 0.00 38.37 5.52
2150 2263 2.696506 GGCCAAAGTATATAGTCCGGC 58.303 52.381 16.68 16.68 37.57 6.13
2151 2264 2.955614 CGGCCAAAGTATATAGTCCGG 58.044 52.381 2.24 0.00 32.75 5.14
2152 2265 2.559668 TCCGGCCAAAGTATATAGTCCG 59.440 50.000 2.24 7.97 35.80 4.79
2153 2266 3.577415 AGTCCGGCCAAAGTATATAGTCC 59.423 47.826 2.24 0.00 0.00 3.85
2154 2267 4.038883 ACAGTCCGGCCAAAGTATATAGTC 59.961 45.833 2.24 0.00 0.00 2.59
2155 2268 3.965347 ACAGTCCGGCCAAAGTATATAGT 59.035 43.478 2.24 0.00 0.00 2.12
2156 2269 4.602340 ACAGTCCGGCCAAAGTATATAG 57.398 45.455 2.24 0.00 0.00 1.31
2157 2270 4.443739 CCAACAGTCCGGCCAAAGTATATA 60.444 45.833 2.24 0.00 0.00 0.86
2158 2271 3.541632 CAACAGTCCGGCCAAAGTATAT 58.458 45.455 2.24 0.00 0.00 0.86
2159 2272 2.355310 CCAACAGTCCGGCCAAAGTATA 60.355 50.000 2.24 0.00 0.00 1.47
2160 2273 1.613255 CCAACAGTCCGGCCAAAGTAT 60.613 52.381 2.24 0.00 0.00 2.12
2161 2274 0.250553 CCAACAGTCCGGCCAAAGTA 60.251 55.000 2.24 0.00 0.00 2.24
2162 2275 1.528309 CCAACAGTCCGGCCAAAGT 60.528 57.895 2.24 0.00 0.00 2.66
2163 2276 1.228124 TCCAACAGTCCGGCCAAAG 60.228 57.895 2.24 0.00 0.00 2.77
2164 2277 1.527380 GTCCAACAGTCCGGCCAAA 60.527 57.895 2.24 0.00 0.00 3.28
2165 2278 1.122632 TAGTCCAACAGTCCGGCCAA 61.123 55.000 2.24 0.00 0.00 4.52
2166 2279 0.907704 ATAGTCCAACAGTCCGGCCA 60.908 55.000 2.24 0.00 0.00 5.36
2167 2280 0.462047 CATAGTCCAACAGTCCGGCC 60.462 60.000 0.00 0.00 0.00 6.13
2168 2281 0.535335 TCATAGTCCAACAGTCCGGC 59.465 55.000 0.00 0.00 0.00 6.13
2169 2282 2.496070 TCTTCATAGTCCAACAGTCCGG 59.504 50.000 0.00 0.00 0.00 5.14
2170 2283 3.868757 TCTTCATAGTCCAACAGTCCG 57.131 47.619 0.00 0.00 0.00 4.79
2171 2284 6.222038 TGTATCTTCATAGTCCAACAGTCC 57.778 41.667 0.00 0.00 0.00 3.85
2172 2285 7.548097 TCTTGTATCTTCATAGTCCAACAGTC 58.452 38.462 0.00 0.00 0.00 3.51
2173 2286 7.482169 TCTTGTATCTTCATAGTCCAACAGT 57.518 36.000 0.00 0.00 0.00 3.55
2174 2287 8.824781 CAATCTTGTATCTTCATAGTCCAACAG 58.175 37.037 0.00 0.00 0.00 3.16
2175 2288 8.539544 TCAATCTTGTATCTTCATAGTCCAACA 58.460 33.333 0.00 0.00 0.00 3.33
2176 2289 8.948631 TCAATCTTGTATCTTCATAGTCCAAC 57.051 34.615 0.00 0.00 0.00 3.77
2177 2290 9.605275 CTTCAATCTTGTATCTTCATAGTCCAA 57.395 33.333 0.00 0.00 0.00 3.53
2178 2291 8.981659 TCTTCAATCTTGTATCTTCATAGTCCA 58.018 33.333 0.00 0.00 0.00 4.02
2179 2292 9.255304 GTCTTCAATCTTGTATCTTCATAGTCC 57.745 37.037 0.00 0.00 0.00 3.85
2183 2296 9.521503 CGAAGTCTTCAATCTTGTATCTTCATA 57.478 33.333 12.99 0.00 32.10 2.15
2184 2297 8.037758 ACGAAGTCTTCAATCTTGTATCTTCAT 58.962 33.333 12.99 0.00 29.74 2.57
2185 2298 7.378966 ACGAAGTCTTCAATCTTGTATCTTCA 58.621 34.615 12.99 0.00 29.74 3.02
2186 2299 7.820044 ACGAAGTCTTCAATCTTGTATCTTC 57.180 36.000 12.99 0.00 29.74 2.87
2212 2325 2.516888 AAGTCCCACCCTGACACGG 61.517 63.158 0.00 0.00 35.15 4.94
2213 2326 1.301716 CAAGTCCCACCCTGACACG 60.302 63.158 0.00 0.00 35.15 4.49
2214 2327 0.693049 ATCAAGTCCCACCCTGACAC 59.307 55.000 0.00 0.00 35.15 3.67
2215 2328 1.906574 GTATCAAGTCCCACCCTGACA 59.093 52.381 0.00 0.00 35.15 3.58
2216 2329 1.134788 CGTATCAAGTCCCACCCTGAC 60.135 57.143 0.00 0.00 0.00 3.51
2217 2330 1.191535 CGTATCAAGTCCCACCCTGA 58.808 55.000 0.00 0.00 0.00 3.86
2218 2331 0.902531 ACGTATCAAGTCCCACCCTG 59.097 55.000 0.00 0.00 0.00 4.45
2219 2332 1.192428 GACGTATCAAGTCCCACCCT 58.808 55.000 0.00 0.00 32.78 4.34
2220 2333 1.136500 GAGACGTATCAAGTCCCACCC 59.864 57.143 5.07 0.00 39.31 4.61
2221 2334 1.136500 GGAGACGTATCAAGTCCCACC 59.864 57.143 12.92 0.00 39.31 4.61
2222 2335 1.822990 TGGAGACGTATCAAGTCCCAC 59.177 52.381 12.92 0.00 39.31 4.61
2223 2336 2.225382 TGGAGACGTATCAAGTCCCA 57.775 50.000 12.92 0.00 39.31 4.37
2224 2337 2.734492 CGTTGGAGACGTATCAAGTCCC 60.734 54.545 12.92 0.00 46.49 4.46
2225 2338 2.527100 CGTTGGAGACGTATCAAGTCC 58.473 52.381 12.92 1.43 46.49 3.85
2236 2349 7.605410 TTGGAAAAATAGATACGTTGGAGAC 57.395 36.000 0.00 0.00 0.00 3.36
2237 2350 7.662258 TGTTTGGAAAAATAGATACGTTGGAGA 59.338 33.333 0.00 0.00 0.00 3.71
2238 2351 7.749126 GTGTTTGGAAAAATAGATACGTTGGAG 59.251 37.037 0.00 0.00 0.00 3.86
2239 2352 7.446013 AGTGTTTGGAAAAATAGATACGTTGGA 59.554 33.333 0.00 0.00 0.00 3.53
2240 2353 7.590279 AGTGTTTGGAAAAATAGATACGTTGG 58.410 34.615 0.00 0.00 0.00 3.77
2241 2354 9.458374 AAAGTGTTTGGAAAAATAGATACGTTG 57.542 29.630 0.00 0.00 0.00 4.10
2247 2360 9.154632 AGGGTAAAAGTGTTTGGAAAAATAGAT 57.845 29.630 0.00 0.00 0.00 1.98
2248 2361 8.541899 AGGGTAAAAGTGTTTGGAAAAATAGA 57.458 30.769 0.00 0.00 0.00 1.98
2249 2362 9.040939 CAAGGGTAAAAGTGTTTGGAAAAATAG 57.959 33.333 0.00 0.00 0.00 1.73
2250 2363 8.541234 ACAAGGGTAAAAGTGTTTGGAAAAATA 58.459 29.630 0.00 0.00 0.00 1.40
2251 2364 7.398829 ACAAGGGTAAAAGTGTTTGGAAAAAT 58.601 30.769 0.00 0.00 0.00 1.82
2252 2365 6.770542 ACAAGGGTAAAAGTGTTTGGAAAAA 58.229 32.000 0.00 0.00 0.00 1.94
2253 2366 6.361768 ACAAGGGTAAAAGTGTTTGGAAAA 57.638 33.333 0.00 0.00 0.00 2.29
2254 2367 6.361768 AACAAGGGTAAAAGTGTTTGGAAA 57.638 33.333 0.00 0.00 30.11 3.13
2255 2368 6.361768 AAACAAGGGTAAAAGTGTTTGGAA 57.638 33.333 0.16 0.00 41.40 3.53
2256 2369 6.166982 CAAAACAAGGGTAAAAGTGTTTGGA 58.833 36.000 1.73 0.00 41.94 3.53
2257 2370 5.352846 CCAAAACAAGGGTAAAAGTGTTTGG 59.647 40.000 1.73 0.00 41.94 3.28
2258 2371 6.091577 GTCCAAAACAAGGGTAAAAGTGTTTG 59.908 38.462 1.73 0.00 41.94 2.93
2259 2372 6.014070 AGTCCAAAACAAGGGTAAAAGTGTTT 60.014 34.615 0.00 0.00 44.01 2.83
2260 2373 5.482526 AGTCCAAAACAAGGGTAAAAGTGTT 59.517 36.000 0.00 0.00 35.77 3.32
2261 2374 5.020795 AGTCCAAAACAAGGGTAAAAGTGT 58.979 37.500 0.00 0.00 0.00 3.55
2262 2375 5.359860 AGAGTCCAAAACAAGGGTAAAAGTG 59.640 40.000 0.00 0.00 0.00 3.16
2263 2376 5.516044 AGAGTCCAAAACAAGGGTAAAAGT 58.484 37.500 0.00 0.00 0.00 2.66
2264 2377 7.284716 AGTTAGAGTCCAAAACAAGGGTAAAAG 59.715 37.037 4.12 0.00 0.00 2.27
2265 2378 7.120716 AGTTAGAGTCCAAAACAAGGGTAAAA 58.879 34.615 4.12 0.00 0.00 1.52
2266 2379 6.665695 AGTTAGAGTCCAAAACAAGGGTAAA 58.334 36.000 4.12 0.00 0.00 2.01
2267 2380 6.256643 AGTTAGAGTCCAAAACAAGGGTAA 57.743 37.500 4.12 0.00 0.00 2.85
2268 2381 5.899631 AGTTAGAGTCCAAAACAAGGGTA 57.100 39.130 4.12 0.00 0.00 3.69
2269 2382 4.790718 AGTTAGAGTCCAAAACAAGGGT 57.209 40.909 4.12 0.00 0.00 4.34
2270 2383 4.261614 GCAAGTTAGAGTCCAAAACAAGGG 60.262 45.833 4.12 0.00 0.00 3.95
2271 2384 4.338118 TGCAAGTTAGAGTCCAAAACAAGG 59.662 41.667 0.00 0.00 0.00 3.61
2272 2385 5.499139 TGCAAGTTAGAGTCCAAAACAAG 57.501 39.130 0.00 0.00 0.00 3.16
2273 2386 5.592282 TCATGCAAGTTAGAGTCCAAAACAA 59.408 36.000 0.00 0.00 0.00 2.83
2274 2387 5.129634 TCATGCAAGTTAGAGTCCAAAACA 58.870 37.500 0.00 0.00 0.00 2.83
2275 2388 5.689383 TCATGCAAGTTAGAGTCCAAAAC 57.311 39.130 0.00 0.00 0.00 2.43
2276 2389 6.899393 AATCATGCAAGTTAGAGTCCAAAA 57.101 33.333 0.00 0.00 0.00 2.44
2277 2390 6.489700 TCAAATCATGCAAGTTAGAGTCCAAA 59.510 34.615 0.00 0.00 0.00 3.28
2278 2391 6.003326 TCAAATCATGCAAGTTAGAGTCCAA 58.997 36.000 0.00 0.00 0.00 3.53
2279 2392 5.559770 TCAAATCATGCAAGTTAGAGTCCA 58.440 37.500 0.00 0.00 0.00 4.02
2280 2393 6.500684 TTCAAATCATGCAAGTTAGAGTCC 57.499 37.500 0.00 0.00 0.00 3.85
2281 2394 7.755591 TCATTCAAATCATGCAAGTTAGAGTC 58.244 34.615 0.00 0.00 0.00 3.36
2282 2395 7.692460 TCATTCAAATCATGCAAGTTAGAGT 57.308 32.000 0.00 0.00 0.00 3.24
2283 2396 8.975410 TTTCATTCAAATCATGCAAGTTAGAG 57.025 30.769 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.