Multiple sequence alignment - TraesCS7B01G391100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G391100 chr7B 100.000 5205 0 0 1 5205 657868686 657863482 0.000000e+00 9612.0
1 TraesCS7B01G391100 chr7B 96.429 140 4 1 2534 2672 46022957 46022818 4.050000e-56 230.0
2 TraesCS7B01G391100 chr7A 91.924 2526 131 26 2696 5201 678149999 678147527 0.000000e+00 3467.0
3 TraesCS7B01G391100 chr7A 93.639 1635 74 19 927 2542 678151654 678150031 0.000000e+00 2416.0
4 TraesCS7B01G391100 chr7A 89.746 907 55 18 1 893 678152841 678151959 0.000000e+00 1125.0
5 TraesCS7B01G391100 chr7A 92.000 50 4 0 5101 5150 678147677 678147628 2.600000e-08 71.3
6 TraesCS7B01G391100 chr7D 91.899 1543 67 23 3 1506 586887433 586885910 0.000000e+00 2104.0
7 TraesCS7B01G391100 chr7D 91.714 1050 62 9 1502 2544 586885783 586884752 0.000000e+00 1434.0
8 TraesCS7B01G391100 chr7D 91.953 1019 69 8 2686 3701 586884719 586883711 0.000000e+00 1415.0
9 TraesCS7B01G391100 chr7D 90.994 322 28 1 3964 4284 586883382 586883061 2.880000e-117 433.0
10 TraesCS7B01G391100 chr3B 99.219 128 1 0 2540 2667 236362074 236361947 1.130000e-56 231.0
11 TraesCS7B01G391100 chr3B 97.727 132 3 0 2540 2671 383716490 383716621 1.460000e-55 228.0
12 TraesCS7B01G391100 chr6D 98.462 130 2 0 2541 2670 160470772 160470643 4.050000e-56 230.0
13 TraesCS7B01G391100 chr3A 98.462 130 2 0 2541 2670 159530455 159530326 4.050000e-56 230.0
14 TraesCS7B01G391100 chr1D 98.450 129 2 0 2539 2667 469018556 469018684 1.460000e-55 228.0
15 TraesCS7B01G391100 chr3D 97.710 131 3 0 2538 2668 261156868 261156998 5.240000e-55 226.0
16 TraesCS7B01G391100 chr3D 97.710 131 3 0 2538 2668 283321122 283321252 5.240000e-55 226.0
17 TraesCS7B01G391100 chr3D 92.308 52 1 2 5151 5202 2463648 2463696 2.600000e-08 71.3
18 TraesCS7B01G391100 chrUn 95.620 137 6 0 2534 2670 64149695 64149831 2.440000e-53 220.0
19 TraesCS7B01G391100 chrUn 82.383 193 25 4 4961 5144 17175041 17175233 5.390000e-35 159.0
20 TraesCS7B01G391100 chr6A 82.110 218 39 0 4918 5135 613658177 613658394 2.470000e-43 187.0
21 TraesCS7B01G391100 chr2B 80.973 226 33 5 4928 5144 46657655 46657879 2.490000e-38 171.0
22 TraesCS7B01G391100 chr2D 88.679 53 5 1 5151 5202 28868192 28868244 4.350000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G391100 chr7B 657863482 657868686 5204 True 9612.000 9612 100.00000 1 5205 1 chr7B.!!$R2 5204
1 TraesCS7B01G391100 chr7A 678147527 678152841 5314 True 1769.825 3467 91.82725 1 5201 4 chr7A.!!$R1 5200
2 TraesCS7B01G391100 chr7D 586883061 586887433 4372 True 1346.500 2104 91.64000 3 4284 4 chr7D.!!$R1 4281

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 452 0.037326 AGATTTCTCTTGTCGCCGCA 60.037 50.0 0.0 0.0 0.0 5.69 F
1203 1532 0.036732 CATGGCGCCTGGTATATGGT 59.963 55.0 29.7 0.0 0.0 3.55 F
2235 2709 0.790814 GTTGCGTTGCCTCTGTCTAC 59.209 55.0 0.0 0.0 0.0 2.59 F
2556 3031 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.0 0.0 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 2221 0.036010 AAGGCTCCTCACCATTCGTG 60.036 55.0 0.00 0.00 44.5 4.35 R
2528 3003 0.107017 AGGGAGTACATGGCATGCAC 60.107 55.0 26.70 23.59 0.0 4.57 R
3891 4373 0.512952 GCTCAACACACATGACCGTC 59.487 55.0 0.00 0.00 0.0 4.79 R
4407 5029 0.975556 TATCAAGAGCTCCACCGCCA 60.976 55.0 10.93 0.00 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.515523 CTGGAAGCCCTGGCATCG 60.516 66.667 11.38 0.00 44.88 3.84
158 159 2.854805 GCAGTTTTTGACGAGGCTCAAC 60.855 50.000 15.95 9.94 29.62 3.18
159 160 2.354510 CAGTTTTTGACGAGGCTCAACA 59.645 45.455 15.95 10.70 29.62 3.33
160 161 3.013921 AGTTTTTGACGAGGCTCAACAA 58.986 40.909 15.95 15.89 29.62 2.83
161 162 3.065371 AGTTTTTGACGAGGCTCAACAAG 59.935 43.478 15.95 0.00 29.62 3.16
220 221 3.313012 TTGTTGTCAAGATCGATCGGT 57.687 42.857 19.33 8.34 0.00 4.69
221 222 2.876091 TGTTGTCAAGATCGATCGGTC 58.124 47.619 20.80 20.80 0.00 4.79
434 439 6.815142 CACCAAAATGGAAATGGAGAGATTTC 59.185 38.462 2.85 0.00 40.96 2.17
447 452 0.037326 AGATTTCTCTTGTCGCCGCA 60.037 50.000 0.00 0.00 0.00 5.69
450 457 4.742201 TCTCTTGTCGCCGCAGCC 62.742 66.667 0.00 0.00 34.57 4.85
467 474 0.511653 GCCTGTTTCCGTTCGAGTTC 59.488 55.000 0.00 0.00 0.00 3.01
476 483 2.159430 TCCGTTCGAGTTCATTTGCATG 59.841 45.455 0.00 0.00 0.00 4.06
545 552 2.459644 TCATGGCCAAGATGGGAAAAG 58.540 47.619 10.96 0.00 38.19 2.27
552 559 3.055602 GCCAAGATGGGAAAAGCTTGAAT 60.056 43.478 0.00 0.00 39.97 2.57
574 583 3.689161 TGTTCAGTGACAAGTTGGAACTG 59.311 43.478 23.95 23.95 39.66 3.16
600 609 2.841266 TGTGATCCGAATTCTGGGGTTA 59.159 45.455 13.87 0.00 0.00 2.85
602 611 3.815401 GTGATCCGAATTCTGGGGTTATG 59.185 47.826 13.87 0.00 0.00 1.90
664 673 1.342174 TGTCGTAGTTGGACTGGGTTC 59.658 52.381 0.00 0.00 35.45 3.62
681 699 5.527951 TGGGTTCGTTGATTCAATTTTCAG 58.472 37.500 1.78 0.00 0.00 3.02
699 717 9.793252 AATTTTCAGATACGAATTCAAATCAGG 57.207 29.630 15.65 9.53 0.00 3.86
700 718 5.991328 TCAGATACGAATTCAAATCAGGC 57.009 39.130 15.65 0.00 0.00 4.85
701 719 5.674525 TCAGATACGAATTCAAATCAGGCT 58.325 37.500 15.65 0.00 0.00 4.58
702 720 6.816136 TCAGATACGAATTCAAATCAGGCTA 58.184 36.000 15.65 0.00 0.00 3.93
703 721 6.701841 TCAGATACGAATTCAAATCAGGCTAC 59.298 38.462 15.65 0.00 0.00 3.58
704 722 6.479990 CAGATACGAATTCAAATCAGGCTACA 59.520 38.462 15.65 0.00 0.00 2.74
721 739 7.865385 TCAGGCTACAAAATACAATGTTGTTTC 59.135 33.333 3.45 0.00 42.35 2.78
761 780 3.006752 TGGCTGGCAAAAGAAATAGTTGG 59.993 43.478 0.00 0.00 0.00 3.77
772 791 0.323087 AATAGTTGGGCCCGGTGTTC 60.323 55.000 19.37 3.40 0.00 3.18
819 852 5.501156 ACTCAACTGAACTTTCTGAAACCT 58.499 37.500 0.00 0.00 0.00 3.50
833 866 3.664107 TGAAACCTTTCGAGATCTGTGG 58.336 45.455 0.00 0.00 40.01 4.17
844 877 1.421268 AGATCTGTGGGTTGCTGACAA 59.579 47.619 0.00 0.00 0.00 3.18
869 905 3.884774 GCCGCCACCATATCCCCA 61.885 66.667 0.00 0.00 0.00 4.96
870 906 3.170362 CCGCCACCATATCCCCAT 58.830 61.111 0.00 0.00 0.00 4.00
879 915 1.623311 CCATATCCCCATACACAGCGA 59.377 52.381 0.00 0.00 0.00 4.93
888 924 2.167398 ATACACAGCGACGGCAAGGT 62.167 55.000 0.00 0.00 43.41 3.50
981 1288 1.648568 TGCCCTAATCCCCAAATCCAA 59.351 47.619 0.00 0.00 0.00 3.53
1048 1362 4.695231 CGGCACCGACGACGAAGT 62.695 66.667 9.28 0.00 44.17 3.01
1153 1467 2.217038 TGGACTGCCAGGTGACCTC 61.217 63.158 0.00 0.00 39.92 3.85
1203 1532 0.036732 CATGGCGCCTGGTATATGGT 59.963 55.000 29.70 0.00 0.00 3.55
1207 1536 0.949105 GCGCCTGGTATATGGTTCGG 60.949 60.000 0.00 0.00 0.00 4.30
1224 1553 1.503818 CGGTTGGTCACCTGTTTCGG 61.504 60.000 0.00 0.00 44.69 4.30
1252 1581 1.001158 GGGAGAGCTACGAGTACATGC 60.001 57.143 0.00 0.00 0.00 4.06
1459 1788 3.845781 AGAAGTGTTCATGTCAGTGGT 57.154 42.857 0.00 0.00 0.00 4.16
1498 1830 5.138125 TGACAAATGCTGATTCTTTTCCC 57.862 39.130 0.00 0.00 0.00 3.97
1546 2009 7.518161 TGCTAATAGAAAACGACAACTGAATG 58.482 34.615 0.00 0.00 0.00 2.67
1583 2046 6.461110 AGAATTCCAATATCAGTTGCTTGG 57.539 37.500 0.65 0.00 39.60 3.61
1588 2051 3.429822 CCAATATCAGTTGCTTGGCCAAG 60.430 47.826 36.58 36.58 41.24 3.61
1732 2205 2.699954 TCAGATTTTCCTTCCGCAGAC 58.300 47.619 0.00 0.00 0.00 3.51
1748 2221 2.857152 GCAGACAGATCATCTTCGTGAC 59.143 50.000 0.00 0.00 0.00 3.67
1945 2418 9.512588 AGAATAATCTCATTTCTGTGAGTTTGT 57.487 29.630 9.35 2.33 44.66 2.83
1976 2450 7.699812 CAGTTTTCTTCAACCTTTTCTCTTCAG 59.300 37.037 0.00 0.00 0.00 3.02
1979 2453 8.801882 TTTCTTCAACCTTTTCTCTTCAGTTA 57.198 30.769 0.00 0.00 0.00 2.24
2015 2489 8.280497 TCAAAGTCGAAATAAAACTACTGAAGC 58.720 33.333 0.00 0.00 0.00 3.86
2047 2521 3.058016 CACTCTGTATTGGTTGCAGGTTG 60.058 47.826 0.00 0.00 38.48 3.77
2117 2591 3.503748 ACTTCAAGAAAGATCTTTGCCGG 59.496 43.478 25.12 11.48 43.43 6.13
2235 2709 0.790814 GTTGCGTTGCCTCTGTCTAC 59.209 55.000 0.00 0.00 0.00 2.59
2268 2742 7.962373 TCATGTTTATAAACTTGTTCTGATGCG 59.038 33.333 29.10 11.60 41.84 4.73
2291 2765 3.777106 TCAACTTGTCTTGAGCCTGAT 57.223 42.857 0.00 0.00 0.00 2.90
2360 2834 5.255710 ACTGTGGTTCTCGATTGATAGAG 57.744 43.478 0.00 0.00 35.91 2.43
2369 2843 6.106648 TCTCGATTGATAGAGGCAAATCAT 57.893 37.500 2.03 0.00 35.34 2.45
2371 2845 7.318893 TCTCGATTGATAGAGGCAAATCATAG 58.681 38.462 2.03 0.00 35.34 2.23
2372 2846 7.177392 TCTCGATTGATAGAGGCAAATCATAGA 59.823 37.037 2.03 0.00 35.34 1.98
2374 2848 7.816513 TCGATTGATAGAGGCAAATCATAGAAG 59.183 37.037 0.00 0.00 32.40 2.85
2375 2849 7.601886 CGATTGATAGAGGCAAATCATAGAAGT 59.398 37.037 0.00 0.00 32.40 3.01
2376 2850 9.282569 GATTGATAGAGGCAAATCATAGAAGTT 57.717 33.333 0.00 0.00 32.40 2.66
2438 2913 4.568072 TTTACCTGTGACAGCATACCAT 57.432 40.909 7.16 0.00 0.00 3.55
2489 2964 6.292488 CCTGAACATTTCTTTGTGTGCAAATC 60.292 38.462 0.00 0.00 42.88 2.17
2523 2998 4.152647 TCCTTCTCAGCTGACTTTACTCA 58.847 43.478 13.74 0.00 0.00 3.41
2528 3003 3.657634 TCAGCTGACTTTACTCAAGCAG 58.342 45.455 13.74 0.00 38.59 4.24
2546 3021 2.408333 GTGCATGCCATGTACTCCC 58.592 57.895 17.31 0.00 41.79 4.30
2548 3023 0.181114 TGCATGCCATGTACTCCCTC 59.819 55.000 16.68 0.00 0.00 4.30
2549 3024 0.536006 GCATGCCATGTACTCCCTCC 60.536 60.000 6.36 0.00 0.00 4.30
2551 3026 0.691078 ATGCCATGTACTCCCTCCGT 60.691 55.000 0.00 0.00 0.00 4.69
2552 3027 1.327690 TGCCATGTACTCCCTCCGTC 61.328 60.000 0.00 0.00 0.00 4.79
2553 3028 2.029307 GCCATGTACTCCCTCCGTCC 62.029 65.000 0.00 0.00 0.00 4.79
2554 3029 1.400530 CCATGTACTCCCTCCGTCCC 61.401 65.000 0.00 0.00 0.00 4.46
2556 3031 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2558 3033 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2559 3034 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2560 3035 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2564 3039 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2565 3040 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2566 3041 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2567 3042 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2568 3043 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2569 3044 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2570 3045 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2571 3046 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2572 3047 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2573 3048 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2575 3050 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2576 3051 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2577 3052 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2578 3053 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2586 3061 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
2587 3062 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2589 3064 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2590 3065 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2597 3072 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
2598 3073 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
2599 3074 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
2600 3075 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
2601 3076 7.919091 GTCTAAATACGGATGTATCAAGTCACA 59.081 37.037 0.00 0.00 40.42 3.58
2602 3077 8.638873 TCTAAATACGGATGTATCAAGTCACAT 58.361 33.333 0.00 0.00 40.42 3.21
2603 3078 9.261180 CTAAATACGGATGTATCAAGTCACATT 57.739 33.333 0.00 0.00 40.42 2.71
2604 3079 8.506168 AAATACGGATGTATCAAGTCACATTT 57.494 30.769 0.00 0.00 40.42 2.32
2605 3080 8.506168 AATACGGATGTATCAAGTCACATTTT 57.494 30.769 0.00 0.00 40.42 1.82
2606 3081 9.607988 AATACGGATGTATCAAGTCACATTTTA 57.392 29.630 0.00 0.00 40.42 1.52
2607 3082 7.539712 ACGGATGTATCAAGTCACATTTTAG 57.460 36.000 0.00 0.00 35.55 1.85
2608 3083 7.103641 ACGGATGTATCAAGTCACATTTTAGT 58.896 34.615 0.00 0.00 35.55 2.24
2609 3084 8.255206 ACGGATGTATCAAGTCACATTTTAGTA 58.745 33.333 0.00 0.00 35.55 1.82
2610 3085 9.261180 CGGATGTATCAAGTCACATTTTAGTAT 57.739 33.333 0.00 0.00 35.55 2.12
2622 3097 8.975439 GTCACATTTTAGTATTAGGTACATCCG 58.025 37.037 0.00 0.00 41.99 4.18
2623 3098 8.698210 TCACATTTTAGTATTAGGTACATCCGT 58.302 33.333 0.00 0.00 41.99 4.69
2624 3099 9.970395 CACATTTTAGTATTAGGTACATCCGTA 57.030 33.333 0.00 0.00 41.99 4.02
2630 3105 9.797642 TTAGTATTAGGTACATCCGTATCTTGA 57.202 33.333 0.00 0.00 39.80 3.02
2631 3106 8.108551 AGTATTAGGTACATCCGTATCTTGAC 57.891 38.462 0.00 0.00 39.80 3.18
2632 3107 6.971726 ATTAGGTACATCCGTATCTTGACA 57.028 37.500 0.00 0.00 39.80 3.58
2633 3108 6.778834 TTAGGTACATCCGTATCTTGACAA 57.221 37.500 0.00 0.00 39.80 3.18
2634 3109 5.670792 AGGTACATCCGTATCTTGACAAA 57.329 39.130 0.00 0.00 35.40 2.83
2635 3110 6.235231 AGGTACATCCGTATCTTGACAAAT 57.765 37.500 0.00 0.00 35.40 2.32
2636 3111 6.281405 AGGTACATCCGTATCTTGACAAATC 58.719 40.000 0.00 0.00 35.40 2.17
2637 3112 6.098409 AGGTACATCCGTATCTTGACAAATCT 59.902 38.462 0.00 0.00 35.40 2.40
2638 3113 7.287005 AGGTACATCCGTATCTTGACAAATCTA 59.713 37.037 0.00 0.00 35.40 1.98
2639 3114 7.924412 GGTACATCCGTATCTTGACAAATCTAA 59.076 37.037 0.00 0.00 0.00 2.10
2640 3115 8.969267 GTACATCCGTATCTTGACAAATCTAAG 58.031 37.037 0.00 0.00 0.00 2.18
2641 3116 7.782049 ACATCCGTATCTTGACAAATCTAAGA 58.218 34.615 0.00 0.00 35.19 2.10
2642 3117 7.707035 ACATCCGTATCTTGACAAATCTAAGAC 59.293 37.037 0.00 0.00 33.69 3.01
2643 3118 7.165460 TCCGTATCTTGACAAATCTAAGACA 57.835 36.000 0.00 0.00 33.69 3.41
2644 3119 7.608153 TCCGTATCTTGACAAATCTAAGACAA 58.392 34.615 0.00 0.00 33.69 3.18
2645 3120 7.759886 TCCGTATCTTGACAAATCTAAGACAAG 59.240 37.037 0.00 0.00 38.34 3.16
2646 3121 7.759886 CCGTATCTTGACAAATCTAAGACAAGA 59.240 37.037 0.00 0.00 45.38 3.02
2647 3122 9.140286 CGTATCTTGACAAATCTAAGACAAGAA 57.860 33.333 0.00 0.00 44.83 2.52
2653 3128 9.748708 TTGACAAATCTAAGACAAGAATTTTGG 57.251 29.630 0.00 0.00 33.04 3.28
2654 3129 8.359642 TGACAAATCTAAGACAAGAATTTTGGG 58.640 33.333 0.00 0.00 33.04 4.12
2655 3130 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2656 3131 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2657 3132 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2658 3133 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2659 3134 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2660 3135 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2661 3136 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2662 3137 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2663 3138 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2664 3139 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2665 3140 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2666 3141 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2667 3142 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2668 3143 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
2669 3144 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
2670 3145 2.852714 TGGGACGGAGGGAGTATTTA 57.147 50.000 0.00 0.00 0.00 1.40
2671 3146 3.119009 TGGGACGGAGGGAGTATTTAA 57.881 47.619 0.00 0.00 0.00 1.52
2672 3147 2.767960 TGGGACGGAGGGAGTATTTAAC 59.232 50.000 0.00 0.00 0.00 2.01
2673 3148 2.103771 GGGACGGAGGGAGTATTTAACC 59.896 54.545 0.00 0.00 0.00 2.85
2674 3149 2.223900 GGACGGAGGGAGTATTTAACCG 60.224 54.545 0.00 0.00 43.61 4.44
2675 3150 1.758862 ACGGAGGGAGTATTTAACCGG 59.241 52.381 0.00 0.00 42.54 5.28
2676 3151 1.069668 CGGAGGGAGTATTTAACCGGG 59.930 57.143 6.32 0.00 36.08 5.73
2677 3152 2.121948 GGAGGGAGTATTTAACCGGGT 58.878 52.381 6.32 0.00 0.00 5.28
2678 3153 2.507058 GGAGGGAGTATTTAACCGGGTT 59.493 50.000 17.83 17.83 0.00 4.11
2679 3154 3.054139 GGAGGGAGTATTTAACCGGGTTT 60.054 47.826 19.02 2.47 0.00 3.27
2680 3155 3.943381 GAGGGAGTATTTAACCGGGTTTG 59.057 47.826 19.02 0.00 0.00 2.93
2681 3156 3.588396 AGGGAGTATTTAACCGGGTTTGA 59.412 43.478 19.02 7.53 0.00 2.69
2682 3157 3.691118 GGGAGTATTTAACCGGGTTTGAC 59.309 47.826 19.02 10.76 0.00 3.18
2683 3158 4.325972 GGAGTATTTAACCGGGTTTGACA 58.674 43.478 19.02 0.00 0.00 3.58
2684 3159 4.393990 GGAGTATTTAACCGGGTTTGACAG 59.606 45.833 19.02 0.00 0.00 3.51
2779 3254 7.692460 TCTGATAACTGATGTGAAATGCTTT 57.308 32.000 0.00 0.00 0.00 3.51
2806 3281 1.315690 TCGCCTTAGATACGTGGAGG 58.684 55.000 0.00 0.00 0.00 4.30
2828 3303 0.601311 GGATGTACAGCCTGGCGATC 60.601 60.000 22.92 10.42 33.23 3.69
2878 3353 7.276438 GCACCAGATAAAATCAAATCTTTGGTC 59.724 37.037 3.02 0.00 38.66 4.02
2894 3369 3.587797 TGGTCGTGTCAGAGGTATTTC 57.412 47.619 0.00 0.00 0.00 2.17
2907 3382 1.751351 GGTATTTCCCCTTGCTCTTGC 59.249 52.381 0.00 0.00 40.20 4.01
2952 3427 8.552083 AATATGAATGCTAGCGATTGTATTCA 57.448 30.769 24.40 24.40 44.64 2.57
2961 3436 7.118245 TGCTAGCGATTGTATTCAATATCAAGG 59.882 37.037 10.77 0.00 43.33 3.61
3009 3484 6.599638 GCTATTTTCTGGTTTGAGACTACCAT 59.400 38.462 0.00 0.00 43.15 3.55
3021 3497 8.893727 GTTTGAGACTACCATAGCATGTTTTAT 58.106 33.333 0.00 0.00 0.00 1.40
3024 3500 9.461312 TGAGACTACCATAGCATGTTTTATTTT 57.539 29.630 0.00 0.00 0.00 1.82
3150 3626 4.541973 ATTTTTCAGCCAAATGGAGGAC 57.458 40.909 2.98 0.00 37.39 3.85
3446 3922 8.844244 GCAATAGTTTCATCACCTAATTCAGAT 58.156 33.333 0.00 0.00 0.00 2.90
3471 3947 2.563179 GTTGCTCACTAGAGACCTTCCA 59.437 50.000 0.00 0.00 44.98 3.53
3602 4080 6.551385 AACTCATCAGTCACTTCATTTGAC 57.449 37.500 0.00 0.00 43.24 3.18
3608 4086 1.464997 GTCACTTCATTTGACGCCCTC 59.535 52.381 0.00 0.00 34.41 4.30
3621 4099 1.455383 CGCCCTCCTGTTTTTGCAGT 61.455 55.000 0.00 0.00 34.84 4.40
3633 4111 3.567579 TTGCAGTGGCCCAGCTACC 62.568 63.158 0.00 0.00 40.93 3.18
3785 4264 1.861542 TTCGCTGGTTGGGATTTGCG 61.862 55.000 0.00 0.00 43.95 4.85
3835 4315 6.922980 GCATATGCACATACATCATTTCAC 57.077 37.500 22.84 0.00 41.59 3.18
3891 4373 2.322161 CAGAATTGCAAAGAAGGCACG 58.678 47.619 1.71 0.00 41.75 5.34
3983 4604 7.224297 TGCCCTACTATTTATTCTCAATCACC 58.776 38.462 0.00 0.00 0.00 4.02
3990 4611 7.941238 ACTATTTATTCTCAATCACCCCATGAG 59.059 37.037 0.00 0.00 41.91 2.90
4102 4723 2.047274 AACCTGATGGACGCCACG 60.047 61.111 0.50 0.00 35.80 4.94
4159 4780 0.737715 GCCTCTGCCTTGTAGACGTG 60.738 60.000 0.00 0.00 0.00 4.49
4195 4816 1.996191 GACGAACAGAGGTGCTTCATC 59.004 52.381 0.00 0.00 0.00 2.92
4196 4817 1.344438 ACGAACAGAGGTGCTTCATCA 59.656 47.619 0.00 0.00 0.00 3.07
4223 4844 5.491982 ACTAAACAAACTCTCCATGCTAGG 58.508 41.667 0.00 0.00 0.00 3.02
4226 4847 0.548510 AAACTCTCCATGCTAGGGCC 59.451 55.000 0.00 0.00 37.74 5.80
4253 4875 2.086869 ACAACATGCCCGATTCTTCAG 58.913 47.619 0.00 0.00 0.00 3.02
4296 4918 2.483013 CGGTTCTGATTTGCGGATCCTA 60.483 50.000 10.75 0.00 38.91 2.94
4297 4919 2.872858 GGTTCTGATTTGCGGATCCTAC 59.127 50.000 10.75 2.14 38.30 3.18
4298 4920 3.432326 GGTTCTGATTTGCGGATCCTACT 60.432 47.826 10.75 0.00 38.30 2.57
4299 4921 3.735237 TCTGATTTGCGGATCCTACTC 57.265 47.619 10.75 0.28 0.00 2.59
4301 4923 2.366916 CTGATTTGCGGATCCTACTCCT 59.633 50.000 10.75 0.00 32.77 3.69
4302 4924 3.572642 TGATTTGCGGATCCTACTCCTA 58.427 45.455 10.75 0.00 32.77 2.94
4303 4925 4.160329 TGATTTGCGGATCCTACTCCTAT 58.840 43.478 10.75 0.00 32.77 2.57
4305 4927 5.958380 TGATTTGCGGATCCTACTCCTATAT 59.042 40.000 10.75 0.00 32.77 0.86
4306 4928 7.123383 TGATTTGCGGATCCTACTCCTATATA 58.877 38.462 10.75 0.00 32.77 0.86
4307 4929 7.785028 TGATTTGCGGATCCTACTCCTATATAT 59.215 37.037 10.75 0.00 32.77 0.86
4308 4930 6.961360 TTGCGGATCCTACTCCTATATATG 57.039 41.667 10.75 0.00 32.77 1.78
4309 4931 6.014771 TGCGGATCCTACTCCTATATATGT 57.985 41.667 10.75 0.00 32.77 2.29
4310 4932 6.062749 TGCGGATCCTACTCCTATATATGTC 58.937 44.000 10.75 0.00 32.77 3.06
4311 4933 6.126449 TGCGGATCCTACTCCTATATATGTCT 60.126 42.308 10.75 0.00 32.77 3.41
4312 4934 6.428771 GCGGATCCTACTCCTATATATGTCTC 59.571 46.154 10.75 0.00 32.77 3.36
4313 4935 7.510407 CGGATCCTACTCCTATATATGTCTCA 58.490 42.308 10.75 0.00 32.77 3.27
4314 4936 7.659799 CGGATCCTACTCCTATATATGTCTCAG 59.340 44.444 10.75 0.00 32.77 3.35
4315 4937 8.719596 GGATCCTACTCCTATATATGTCTCAGA 58.280 40.741 3.84 0.00 32.18 3.27
4316 4938 9.555727 GATCCTACTCCTATATATGTCTCAGAC 57.444 40.741 0.00 0.00 0.00 3.51
4317 4939 7.557724 TCCTACTCCTATATATGTCTCAGACG 58.442 42.308 0.00 0.00 34.95 4.18
4318 4940 7.180587 TCCTACTCCTATATATGTCTCAGACGT 59.819 40.741 4.56 4.56 34.95 4.34
4319 4941 7.493320 CCTACTCCTATATATGTCTCAGACGTC 59.507 44.444 7.70 7.70 34.95 4.34
4320 4942 5.870433 ACTCCTATATATGTCTCAGACGTCG 59.130 44.000 10.46 5.48 34.95 5.12
4321 4943 5.176592 TCCTATATATGTCTCAGACGTCGG 58.823 45.833 10.46 10.03 34.95 4.79
4322 4944 4.936411 CCTATATATGTCTCAGACGTCGGT 59.064 45.833 15.37 0.00 34.95 4.69
4347 4969 7.597743 GTCTGACATGCTTCTCAATTGAATTTT 59.402 33.333 9.88 0.00 0.00 1.82
4356 4978 5.392995 TCTCAATTGAATTTTGGAGGTGGA 58.607 37.500 9.88 0.00 0.00 4.02
4361 4983 2.108075 TGAATTTTGGAGGTGGAGCTCA 59.892 45.455 17.19 0.00 0.00 4.26
4364 4986 1.434188 TTTGGAGGTGGAGCTCAGAA 58.566 50.000 17.19 0.00 0.00 3.02
4376 4998 6.652900 GGTGGAGCTCAGAAATATTCCTATTC 59.347 42.308 17.19 0.00 0.00 1.75
4381 5003 9.816354 GAGCTCAGAAATATTCCTATTCCTATC 57.184 37.037 9.40 0.00 0.00 2.08
4395 5017 7.561722 TCCTATTCCTATCCCTCTATTCATTCG 59.438 40.741 0.00 0.00 0.00 3.34
4407 5029 8.137437 CCCTCTATTCATTCGCAATTGTATTTT 58.863 33.333 7.40 0.00 0.00 1.82
4409 5031 8.854979 TCTATTCATTCGCAATTGTATTTTGG 57.145 30.769 7.40 0.00 0.00 3.28
4410 5032 5.776519 TTCATTCGCAATTGTATTTTGGC 57.223 34.783 7.40 0.00 0.00 4.52
4417 5039 3.510719 CAATTGTATTTTGGCGGTGGAG 58.489 45.455 0.00 0.00 0.00 3.86
4425 5047 1.841302 TTGGCGGTGGAGCTCTTGAT 61.841 55.000 14.64 0.00 37.29 2.57
4471 5093 6.919662 CAGATAAAACATTTGTGAAGCACACT 59.080 34.615 13.51 0.00 44.47 3.55
4493 5115 4.972514 TGATTAATACATTGCCGCAACA 57.027 36.364 8.25 0.00 0.00 3.33
4494 5116 5.316327 TGATTAATACATTGCCGCAACAA 57.684 34.783 8.25 0.00 0.00 2.83
4495 5117 5.098893 TGATTAATACATTGCCGCAACAAC 58.901 37.500 8.25 0.00 31.03 3.32
4496 5118 4.505313 TTAATACATTGCCGCAACAACA 57.495 36.364 8.25 0.00 31.03 3.33
4497 5119 3.377346 AATACATTGCCGCAACAACAA 57.623 38.095 8.25 0.00 31.03 2.83
4498 5120 2.871182 TACATTGCCGCAACAACAAA 57.129 40.000 8.25 0.00 31.03 2.83
4513 5135 4.432712 ACAACAAAAAGCCACACTGAATC 58.567 39.130 0.00 0.00 0.00 2.52
4530 5152 5.581085 ACTGAATCAACACGAGGTAATAAGC 59.419 40.000 0.00 0.00 0.00 3.09
4570 5192 4.668941 GCAAAAGAAGCAACACAACAAACC 60.669 41.667 0.00 0.00 0.00 3.27
4605 5227 7.393515 GGTACAACAAAAGGGAACTAAGATGAT 59.606 37.037 0.00 0.00 42.68 2.45
4649 5271 1.471676 CCAAGCCGTCAGTGAGATACC 60.472 57.143 0.00 0.00 0.00 2.73
4653 5275 0.456221 CCGTCAGTGAGATACCGCTT 59.544 55.000 0.00 0.00 0.00 4.68
4655 5277 1.920574 CGTCAGTGAGATACCGCTTTG 59.079 52.381 0.00 0.00 0.00 2.77
4693 5315 8.974060 TTCTAACCTTGTGTCTTAATTTCTGT 57.026 30.769 0.00 0.00 0.00 3.41
4704 5326 1.341080 AATTTCTGTGGGGCTGTTGG 58.659 50.000 0.00 0.00 0.00 3.77
4707 5329 2.282462 CTGTGGGGCTGTTGGGAC 60.282 66.667 0.00 0.00 0.00 4.46
4727 5349 3.679389 ACTGATCTCCAATGTTGTCCAC 58.321 45.455 0.00 0.00 0.00 4.02
4728 5350 3.328931 ACTGATCTCCAATGTTGTCCACT 59.671 43.478 0.00 0.00 0.00 4.00
4729 5351 3.937706 CTGATCTCCAATGTTGTCCACTC 59.062 47.826 0.00 0.00 0.00 3.51
4733 5355 4.531854 TCTCCAATGTTGTCCACTCAAAA 58.468 39.130 0.00 0.00 0.00 2.44
4734 5356 4.338118 TCTCCAATGTTGTCCACTCAAAAC 59.662 41.667 0.00 0.00 0.00 2.43
4735 5357 3.066064 TCCAATGTTGTCCACTCAAAACG 59.934 43.478 0.00 0.00 0.00 3.60
4750 5372 7.096640 CCACTCAAAACGAACACATAAAACATC 60.097 37.037 0.00 0.00 0.00 3.06
4771 5393 3.456317 GGACACGTCCTGGACAGT 58.544 61.111 25.42 21.71 46.16 3.55
4772 5394 1.006102 GGACACGTCCTGGACAGTG 60.006 63.158 31.40 31.40 46.16 3.66
4775 5397 1.300931 CACGTCCTGGACAGTGGTG 60.301 63.158 28.41 22.51 35.34 4.17
4783 5405 2.032681 GACAGTGGTGGTGGAGCC 59.967 66.667 0.00 0.00 37.90 4.70
4808 5430 0.757188 TTCAACCCGGTGCACCAAAT 60.757 50.000 34.16 16.36 35.14 2.32
4809 5431 1.006337 CAACCCGGTGCACCAAATG 60.006 57.895 34.16 22.06 35.14 2.32
4810 5432 1.152652 AACCCGGTGCACCAAATGA 60.153 52.632 34.16 0.00 35.14 2.57
4811 5433 1.460273 AACCCGGTGCACCAAATGAC 61.460 55.000 34.16 6.82 35.14 3.06
4813 5435 2.560861 CGGTGCACCAAATGACCG 59.439 61.111 34.16 15.05 41.96 4.79
4814 5436 2.258286 GGTGCACCAAATGACCGC 59.742 61.111 31.23 0.00 35.64 5.68
4820 5442 0.322997 CACCAAATGACCGCCCCTTA 60.323 55.000 0.00 0.00 0.00 2.69
4821 5443 0.406361 ACCAAATGACCGCCCCTTAA 59.594 50.000 0.00 0.00 0.00 1.85
4868 5492 1.403679 CAGTCTCAGTCCGAGTCATCC 59.596 57.143 0.00 0.00 42.88 3.51
4873 5497 1.025041 CAGTCCGAGTCATCCATCGA 58.975 55.000 0.00 0.00 41.40 3.59
4874 5498 1.611006 CAGTCCGAGTCATCCATCGAT 59.389 52.381 0.00 0.00 41.40 3.59
4875 5499 2.814336 CAGTCCGAGTCATCCATCGATA 59.186 50.000 0.00 0.00 41.40 2.92
4876 5500 3.078097 AGTCCGAGTCATCCATCGATAG 58.922 50.000 0.00 0.00 41.40 2.08
4877 5501 1.813178 TCCGAGTCATCCATCGATAGC 59.187 52.381 0.00 0.00 41.40 2.97
4887 5511 3.130633 TCCATCGATAGCAATTCAACCG 58.869 45.455 0.00 0.00 0.00 4.44
4952 5577 2.158971 GGAATGAGCAGAAGGAGGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
4967 5592 2.025155 GGAGACGGATCAGCTGAAGTA 58.975 52.381 22.50 0.00 0.00 2.24
4968 5593 2.034053 GGAGACGGATCAGCTGAAGTAG 59.966 54.545 22.50 14.55 0.00 2.57
4969 5594 2.028130 AGACGGATCAGCTGAAGTAGG 58.972 52.381 22.50 10.91 0.00 3.18
4970 5595 2.025155 GACGGATCAGCTGAAGTAGGA 58.975 52.381 22.50 0.00 0.00 2.94
4971 5596 2.028130 ACGGATCAGCTGAAGTAGGAG 58.972 52.381 22.50 10.36 0.00 3.69
4972 5597 2.302260 CGGATCAGCTGAAGTAGGAGA 58.698 52.381 22.50 0.00 0.00 3.71
4973 5598 2.890311 CGGATCAGCTGAAGTAGGAGAT 59.110 50.000 22.50 0.00 0.00 2.75
4974 5599 3.305267 CGGATCAGCTGAAGTAGGAGATG 60.305 52.174 22.50 0.00 0.00 2.90
4975 5600 3.894427 GGATCAGCTGAAGTAGGAGATGA 59.106 47.826 22.50 0.00 38.87 2.92
4976 5601 4.343526 GGATCAGCTGAAGTAGGAGATGAA 59.656 45.833 22.50 0.00 38.08 2.57
4977 5602 5.011943 GGATCAGCTGAAGTAGGAGATGAAT 59.988 44.000 22.50 0.00 38.08 2.57
4978 5603 5.528043 TCAGCTGAAGTAGGAGATGAATC 57.472 43.478 15.67 0.00 31.85 2.52
4979 5604 4.958581 TCAGCTGAAGTAGGAGATGAATCA 59.041 41.667 15.67 0.00 31.85 2.57
4980 5605 5.068855 TCAGCTGAAGTAGGAGATGAATCAG 59.931 44.000 15.67 0.00 31.85 2.90
4982 5607 5.534207 CTGAAGTAGGAGATGAATCAGCT 57.466 43.478 0.00 0.00 30.65 4.24
4983 5608 5.273674 TGAAGTAGGAGATGAATCAGCTG 57.726 43.478 5.47 7.63 26.98 4.24
4984 5609 4.958581 TGAAGTAGGAGATGAATCAGCTGA 59.041 41.667 20.79 20.79 26.98 4.26
4985 5610 5.423290 TGAAGTAGGAGATGAATCAGCTGAA 59.577 40.000 22.50 4.47 26.98 3.02
4986 5611 5.534207 AGTAGGAGATGAATCAGCTGAAG 57.466 43.478 22.50 0.00 26.98 3.02
4987 5612 4.961730 AGTAGGAGATGAATCAGCTGAAGT 59.038 41.667 22.50 12.03 26.98 3.01
4988 5613 6.132658 AGTAGGAGATGAATCAGCTGAAGTA 58.867 40.000 22.50 10.03 26.98 2.24
5052 5677 2.171448 AGAAGGACAAGCGAATAGGCAT 59.829 45.455 0.00 0.00 34.64 4.40
5065 5690 5.639506 GCGAATAGGCATAAGCTTCATAAGA 59.360 40.000 0.00 0.00 41.70 2.10
5066 5691 6.314896 GCGAATAGGCATAAGCTTCATAAGAT 59.685 38.462 0.00 0.00 41.70 2.40
5067 5692 7.465245 GCGAATAGGCATAAGCTTCATAAGATC 60.465 40.741 0.00 0.00 41.70 2.75
5068 5693 7.547019 CGAATAGGCATAAGCTTCATAAGATCA 59.453 37.037 0.00 0.00 41.70 2.92
5069 5694 9.224267 GAATAGGCATAAGCTTCATAAGATCAA 57.776 33.333 0.00 0.00 41.70 2.57
5070 5695 8.789825 ATAGGCATAAGCTTCATAAGATCAAG 57.210 34.615 0.00 0.00 41.70 3.02
5071 5696 6.002704 AGGCATAAGCTTCATAAGATCAAGG 58.997 40.000 0.00 0.00 41.70 3.61
5072 5697 5.335504 GGCATAAGCTTCATAAGATCAAGGC 60.336 44.000 0.00 0.00 41.70 4.35
5073 5698 5.240183 GCATAAGCTTCATAAGATCAAGGCA 59.760 40.000 0.00 0.00 37.91 4.75
5074 5699 6.238842 GCATAAGCTTCATAAGATCAAGGCAA 60.239 38.462 0.00 0.00 37.91 4.52
5075 5700 7.523380 GCATAAGCTTCATAAGATCAAGGCAAT 60.523 37.037 0.00 0.00 37.91 3.56
5076 5701 6.786967 AAGCTTCATAAGATCAAGGCAATT 57.213 33.333 0.00 0.00 0.00 2.32
5077 5702 7.886629 AAGCTTCATAAGATCAAGGCAATTA 57.113 32.000 0.00 0.00 0.00 1.40
5078 5703 8.474710 AAGCTTCATAAGATCAAGGCAATTAT 57.525 30.769 0.00 0.00 0.00 1.28
5079 5704 8.474710 AGCTTCATAAGATCAAGGCAATTATT 57.525 30.769 0.00 0.00 0.00 1.40
5080 5705 8.358148 AGCTTCATAAGATCAAGGCAATTATTG 58.642 33.333 0.00 0.00 0.00 1.90
5081 5706 8.355169 GCTTCATAAGATCAAGGCAATTATTGA 58.645 33.333 9.36 3.28 39.59 2.57
5084 5709 9.631257 TCATAAGATCAAGGCAATTATTGAAGA 57.369 29.630 9.36 0.90 38.80 2.87
5085 5710 9.674824 CATAAGATCAAGGCAATTATTGAAGAC 57.325 33.333 9.36 0.00 38.80 3.01
5086 5711 7.951347 AAGATCAAGGCAATTATTGAAGACT 57.049 32.000 9.36 0.00 38.80 3.24
5088 5713 9.466497 AAGATCAAGGCAATTATTGAAGACTAA 57.534 29.630 9.36 0.00 38.80 2.24
5089 5714 8.897752 AGATCAAGGCAATTATTGAAGACTAAC 58.102 33.333 9.36 0.00 38.80 2.34
5090 5715 7.994425 TCAAGGCAATTATTGAAGACTAACA 57.006 32.000 9.36 0.00 32.66 2.41
5091 5716 7.816640 TCAAGGCAATTATTGAAGACTAACAC 58.183 34.615 9.36 0.00 32.66 3.32
5092 5717 7.665559 TCAAGGCAATTATTGAAGACTAACACT 59.334 33.333 9.36 0.00 32.66 3.55
5093 5718 8.946085 CAAGGCAATTATTGAAGACTAACACTA 58.054 33.333 9.36 0.00 0.00 2.74
5094 5719 9.686683 AAGGCAATTATTGAAGACTAACACTAT 57.313 29.630 9.36 0.00 0.00 2.12
5095 5720 9.686683 AGGCAATTATTGAAGACTAACACTATT 57.313 29.630 9.36 0.00 0.00 1.73
5177 5852 6.893958 AACTGCTATGTTTAGTTGATCGAG 57.106 37.500 0.00 0.00 33.69 4.04
5188 5863 8.188799 TGTTTAGTTGATCGAGTACCTATCTTG 58.811 37.037 0.00 0.00 0.00 3.02
5193 5868 5.437946 TGATCGAGTACCTATCTTGTCAGT 58.562 41.667 0.00 0.00 0.00 3.41
5195 5870 5.562506 TCGAGTACCTATCTTGTCAGTTG 57.437 43.478 0.00 0.00 0.00 3.16
5201 5876 8.828688 AGTACCTATCTTGTCAGTTGTTAAAC 57.171 34.615 0.00 0.00 36.47 2.01
5202 5877 7.876582 AGTACCTATCTTGTCAGTTGTTAAACC 59.123 37.037 0.00 0.00 36.94 3.27
5203 5878 5.699458 ACCTATCTTGTCAGTTGTTAAACCG 59.301 40.000 0.00 0.00 36.94 4.44
5204 5879 3.955771 TCTTGTCAGTTGTTAAACCGC 57.044 42.857 0.00 0.00 36.94 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.979155 GCTGTTTCTGGAAGGGGGC 60.979 63.158 0.00 0.00 0.00 5.80
158 159 1.156736 CACGGGTAAACAGAGGCTTG 58.843 55.000 0.00 0.00 0.00 4.01
159 160 0.763035 ACACGGGTAAACAGAGGCTT 59.237 50.000 0.00 0.00 0.00 4.35
160 161 0.320697 GACACGGGTAAACAGAGGCT 59.679 55.000 0.00 0.00 0.00 4.58
161 162 1.012486 CGACACGGGTAAACAGAGGC 61.012 60.000 0.00 0.00 0.00 4.70
164 165 1.267806 GAGACGACACGGGTAAACAGA 59.732 52.381 0.00 0.00 0.00 3.41
165 166 1.694639 GAGACGACACGGGTAAACAG 58.305 55.000 0.00 0.00 0.00 3.16
166 167 0.040157 CGAGACGACACGGGTAAACA 60.040 55.000 0.00 0.00 0.00 2.83
216 217 1.228033 TGACTGACTGACCGACCGA 60.228 57.895 0.00 0.00 0.00 4.69
217 218 1.210413 CTGACTGACTGACCGACCG 59.790 63.158 0.00 0.00 0.00 4.79
218 219 0.241481 GACTGACTGACTGACCGACC 59.759 60.000 0.00 0.00 0.00 4.79
219 220 0.952280 TGACTGACTGACTGACCGAC 59.048 55.000 0.00 0.00 0.00 4.79
220 221 1.239347 CTGACTGACTGACTGACCGA 58.761 55.000 0.00 0.00 0.00 4.69
221 222 0.387878 GCTGACTGACTGACTGACCG 60.388 60.000 0.00 0.00 0.00 4.79
222 223 0.965439 AGCTGACTGACTGACTGACC 59.035 55.000 0.00 0.00 0.00 4.02
434 439 4.749310 AGGCTGCGGCGACAAGAG 62.749 66.667 12.98 0.00 39.81 2.85
447 452 0.106149 AACTCGAACGGAAACAGGCT 59.894 50.000 0.00 0.00 0.00 4.58
450 457 4.211389 CAAATGAACTCGAACGGAAACAG 58.789 43.478 0.00 0.00 0.00 3.16
457 464 1.906966 GCATGCAAATGAACTCGAACG 59.093 47.619 14.21 0.00 0.00 3.95
467 474 8.757164 AGAACAATCATATATGCATGCAAATG 57.243 30.769 26.68 25.19 0.00 2.32
545 552 4.558538 ACTTGTCACTGAACATTCAAGC 57.441 40.909 6.35 0.00 36.64 4.01
552 559 3.689161 CAGTTCCAACTTGTCACTGAACA 59.311 43.478 10.28 0.00 37.63 3.18
574 583 3.375299 CCCAGAATTCGGATCACAGTTTC 59.625 47.826 15.21 0.00 0.00 2.78
600 609 7.210873 GTCTCGATAATCTAAACTGGAACCAT 58.789 38.462 0.00 0.00 0.00 3.55
602 611 5.686397 CGTCTCGATAATCTAAACTGGAACC 59.314 44.000 0.00 0.00 0.00 3.62
664 673 8.826546 ATTCGTATCTGAAAATTGAATCAACG 57.173 30.769 0.00 0.00 31.82 4.10
681 699 6.844696 TGTAGCCTGATTTGAATTCGTATC 57.155 37.500 10.93 10.93 0.00 2.24
694 712 7.466746 ACAACATTGTATTTTGTAGCCTGAT 57.533 32.000 0.00 0.00 40.16 2.90
696 714 7.867403 AGAAACAACATTGTATTTTGTAGCCTG 59.133 33.333 0.00 0.00 41.31 4.85
697 715 7.951591 AGAAACAACATTGTATTTTGTAGCCT 58.048 30.769 0.00 0.00 41.31 4.58
699 717 9.118236 GAGAGAAACAACATTGTATTTTGTAGC 57.882 33.333 0.00 0.00 41.31 3.58
702 720 8.352942 GGAGAGAGAAACAACATTGTATTTTGT 58.647 33.333 0.00 0.00 41.31 2.83
703 721 7.809806 GGGAGAGAGAAACAACATTGTATTTTG 59.190 37.037 0.00 0.00 41.31 2.44
704 722 7.725844 AGGGAGAGAGAAACAACATTGTATTTT 59.274 33.333 0.00 0.00 41.31 1.82
761 780 1.303317 ATGAACAGAACACCGGGCC 60.303 57.895 6.32 0.00 0.00 5.80
819 852 1.347707 AGCAACCCACAGATCTCGAAA 59.652 47.619 0.00 0.00 0.00 3.46
869 905 1.447838 CCTTGCCGTCGCTGTGTAT 60.448 57.895 0.00 0.00 35.36 2.29
870 906 2.048597 CCTTGCCGTCGCTGTGTA 60.049 61.111 0.00 0.00 35.36 2.90
1207 1536 1.652563 GCCGAAACAGGTGACCAAC 59.347 57.895 3.63 0.00 0.00 3.77
1224 1553 3.461773 TAGCTCTCCCTGCACGGC 61.462 66.667 0.00 0.00 0.00 5.68
1498 1830 9.698309 AGCATAAGCACTACATATACTTAGTTG 57.302 33.333 0.00 0.00 45.49 3.16
1546 2009 5.529581 TGGAATTCTTCTTTTTGGGTGAC 57.470 39.130 5.23 0.00 0.00 3.67
1583 2046 2.805671 GGTTAATGCAAAACACCTTGGC 59.194 45.455 14.94 0.00 0.00 4.52
1748 2221 0.036010 AAGGCTCCTCACCATTCGTG 60.036 55.000 0.00 0.00 44.50 4.35
1828 2301 9.521503 AAAGAACAATCTTAAAGTTTGCTCTTC 57.478 29.630 12.76 4.45 45.19 2.87
1897 2370 0.954452 CCCTTGAACAGTGTTGAGGC 59.046 55.000 21.66 7.31 0.00 4.70
1945 2418 9.634163 GAGAAAAGGTTGAAGAAAACTGTAAAA 57.366 29.630 0.00 0.00 35.38 1.52
1993 2467 9.654663 AATAGCTTCAGTAGTTTTATTTCGACT 57.345 29.630 0.00 0.00 0.00 4.18
2015 2489 9.722056 GCAACCAATACAGAGTGAAATAAATAG 57.278 33.333 0.00 0.00 0.00 1.73
2047 2521 4.664150 TTGTCCAAGATGTTTTTCCACC 57.336 40.909 0.00 0.00 0.00 4.61
2261 2735 4.627035 TCAAGACAAGTTGATACGCATCAG 59.373 41.667 10.54 0.00 42.11 2.90
2268 2742 4.569943 TCAGGCTCAAGACAAGTTGATAC 58.430 43.478 10.54 0.82 35.88 2.24
2319 2793 2.032924 AGTTTAAAGTCAAGCACGCCAC 59.967 45.455 0.00 0.00 0.00 5.01
2376 2850 9.042008 GGTCGATGAGAAGCAAATAACTTATTA 57.958 33.333 0.00 0.00 0.00 0.98
2377 2851 7.770897 AGGTCGATGAGAAGCAAATAACTTATT 59.229 33.333 0.00 0.00 0.00 1.40
2378 2852 7.275920 AGGTCGATGAGAAGCAAATAACTTAT 58.724 34.615 0.00 0.00 0.00 1.73
2379 2853 6.640518 AGGTCGATGAGAAGCAAATAACTTA 58.359 36.000 0.00 0.00 0.00 2.24
2398 2872 8.548721 CAGGTAAATATTTGCTAAAGTAGGTCG 58.451 37.037 14.77 0.00 0.00 4.79
2463 2938 3.446873 TGCACACAAAGAAATGTTCAGGT 59.553 39.130 0.00 0.00 0.00 4.00
2489 2964 3.373439 GCTGAGAAGGAACATTAGCACTG 59.627 47.826 0.00 0.00 0.00 3.66
2528 3003 0.107017 AGGGAGTACATGGCATGCAC 60.107 55.000 26.70 23.59 0.00 4.57
2544 3019 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2545 3020 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2546 3021 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2548 3023 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2549 3024 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2551 3026 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2552 3027 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2560 3035 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
2564 3039 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2571 3046 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
2572 3047 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
2573 3048 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
2575 3050 7.919091 TGTGACTTGATACATCCGTATTTAGAC 59.081 37.037 0.00 0.00 38.48 2.59
2576 3051 8.002984 TGTGACTTGATACATCCGTATTTAGA 57.997 34.615 0.00 0.00 38.48 2.10
2577 3052 8.818141 ATGTGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
2578 3053 9.607988 AAATGTGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
2579 3054 8.506168 AAATGTGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
2580 3055 8.506168 AAAATGTGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
2581 3056 9.261180 CTAAAATGTGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
2582 3057 8.255206 ACTAAAATGTGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 36.56 4.02
2583 3058 7.103641 ACTAAAATGTGACTTGATACATCCGT 58.896 34.615 0.00 0.00 36.56 4.69
2584 3059 7.539712 ACTAAAATGTGACTTGATACATCCG 57.460 36.000 0.00 0.00 36.56 4.18
2596 3071 8.975439 CGGATGTACCTAATACTAAAATGTGAC 58.025 37.037 0.00 0.00 34.56 3.67
2597 3072 8.698210 ACGGATGTACCTAATACTAAAATGTGA 58.302 33.333 0.00 0.00 34.56 3.58
2598 3073 8.882415 ACGGATGTACCTAATACTAAAATGTG 57.118 34.615 0.00 0.00 34.56 3.21
2604 3079 9.797642 TCAAGATACGGATGTACCTAATACTAA 57.202 33.333 0.00 0.00 34.56 2.24
2605 3080 9.224267 GTCAAGATACGGATGTACCTAATACTA 57.776 37.037 0.00 0.00 34.56 1.82
2606 3081 7.722728 TGTCAAGATACGGATGTACCTAATACT 59.277 37.037 0.00 0.00 34.56 2.12
2607 3082 7.879070 TGTCAAGATACGGATGTACCTAATAC 58.121 38.462 0.00 0.00 36.31 1.89
2608 3083 8.467963 TTGTCAAGATACGGATGTACCTAATA 57.532 34.615 0.00 0.00 36.31 0.98
2609 3084 6.971726 TGTCAAGATACGGATGTACCTAAT 57.028 37.500 0.00 0.00 36.31 1.73
2610 3085 6.778834 TTGTCAAGATACGGATGTACCTAA 57.221 37.500 0.00 0.00 36.31 2.69
2611 3086 6.778834 TTTGTCAAGATACGGATGTACCTA 57.221 37.500 0.00 0.00 36.31 3.08
2612 3087 5.670792 TTTGTCAAGATACGGATGTACCT 57.329 39.130 0.00 0.00 36.31 3.08
2613 3088 6.281405 AGATTTGTCAAGATACGGATGTACC 58.719 40.000 0.00 0.00 32.26 3.34
2614 3089 8.867112 TTAGATTTGTCAAGATACGGATGTAC 57.133 34.615 0.00 0.00 32.26 2.90
2615 3090 8.909923 TCTTAGATTTGTCAAGATACGGATGTA 58.090 33.333 0.00 0.00 34.45 2.29
2616 3091 7.707035 GTCTTAGATTTGTCAAGATACGGATGT 59.293 37.037 0.00 0.00 31.40 3.06
2617 3092 7.706607 TGTCTTAGATTTGTCAAGATACGGATG 59.293 37.037 0.00 0.00 31.40 3.51
2618 3093 7.782049 TGTCTTAGATTTGTCAAGATACGGAT 58.218 34.615 0.00 0.00 31.40 4.18
2619 3094 7.165460 TGTCTTAGATTTGTCAAGATACGGA 57.835 36.000 0.00 0.00 31.40 4.69
2620 3095 7.759886 TCTTGTCTTAGATTTGTCAAGATACGG 59.240 37.037 7.76 0.00 37.13 4.02
2621 3096 8.689251 TCTTGTCTTAGATTTGTCAAGATACG 57.311 34.615 7.76 0.00 37.13 3.06
2627 3102 9.748708 CCAAAATTCTTGTCTTAGATTTGTCAA 57.251 29.630 0.00 0.00 28.79 3.18
2628 3103 8.359642 CCCAAAATTCTTGTCTTAGATTTGTCA 58.640 33.333 0.00 0.00 28.79 3.58
2629 3104 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2630 3105 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2631 3106 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2632 3107 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2633 3108 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2634 3109 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2635 3110 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2636 3111 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2637 3112 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2638 3113 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2639 3114 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2640 3115 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2641 3116 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2642 3117 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2643 3118 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2644 3119 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2645 3120 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2646 3121 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2647 3122 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2648 3123 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2649 3124 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2650 3125 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
2651 3126 2.767960 GTTAAATACTCCCTCCGTCCCA 59.232 50.000 0.00 0.00 0.00 4.37
2652 3127 2.103771 GGTTAAATACTCCCTCCGTCCC 59.896 54.545 0.00 0.00 0.00 4.46
2653 3128 2.223900 CGGTTAAATACTCCCTCCGTCC 60.224 54.545 0.00 0.00 33.20 4.79
2654 3129 2.223900 CCGGTTAAATACTCCCTCCGTC 60.224 54.545 0.00 0.00 35.59 4.79
2655 3130 1.758862 CCGGTTAAATACTCCCTCCGT 59.241 52.381 0.00 0.00 35.59 4.69
2656 3131 1.069668 CCCGGTTAAATACTCCCTCCG 59.930 57.143 0.00 0.00 36.85 4.63
2657 3132 2.121948 ACCCGGTTAAATACTCCCTCC 58.878 52.381 0.00 0.00 0.00 4.30
2658 3133 3.920231 AACCCGGTTAAATACTCCCTC 57.080 47.619 0.00 0.00 0.00 4.30
2659 3134 3.588396 TCAAACCCGGTTAAATACTCCCT 59.412 43.478 2.39 0.00 0.00 4.20
2660 3135 3.691118 GTCAAACCCGGTTAAATACTCCC 59.309 47.826 2.39 0.00 0.00 4.30
2661 3136 4.325972 TGTCAAACCCGGTTAAATACTCC 58.674 43.478 2.39 0.00 0.00 3.85
2662 3137 5.240121 TCTGTCAAACCCGGTTAAATACTC 58.760 41.667 2.39 0.00 0.00 2.59
2663 3138 5.231702 TCTGTCAAACCCGGTTAAATACT 57.768 39.130 2.39 0.00 0.00 2.12
2664 3139 5.471116 AGTTCTGTCAAACCCGGTTAAATAC 59.529 40.000 2.39 0.75 0.00 1.89
2665 3140 5.623169 AGTTCTGTCAAACCCGGTTAAATA 58.377 37.500 2.39 0.00 0.00 1.40
2666 3141 4.466827 AGTTCTGTCAAACCCGGTTAAAT 58.533 39.130 2.39 0.00 0.00 1.40
2667 3142 3.888583 AGTTCTGTCAAACCCGGTTAAA 58.111 40.909 2.39 0.00 0.00 1.52
2668 3143 3.564053 AGTTCTGTCAAACCCGGTTAA 57.436 42.857 2.39 0.00 0.00 2.01
2669 3144 3.564053 AAGTTCTGTCAAACCCGGTTA 57.436 42.857 2.39 0.00 0.00 2.85
2670 3145 2.430248 AAGTTCTGTCAAACCCGGTT 57.570 45.000 0.00 0.00 0.00 4.44
2671 3146 2.436911 AGTAAGTTCTGTCAAACCCGGT 59.563 45.455 0.00 0.00 0.00 5.28
2672 3147 2.806244 CAGTAAGTTCTGTCAAACCCGG 59.194 50.000 0.00 0.00 0.00 5.73
2673 3148 3.724374 TCAGTAAGTTCTGTCAAACCCG 58.276 45.455 0.00 0.00 36.85 5.28
2674 3149 5.123936 ACTTCAGTAAGTTCTGTCAAACCC 58.876 41.667 0.00 0.00 43.60 4.11
2701 3176 4.140536 TCACATAAGCACACATGGACAAA 58.859 39.130 0.00 0.00 0.00 2.83
2779 3254 5.506815 CCACGTATCTAAGGCGATTAACAGA 60.507 44.000 0.00 0.00 0.00 3.41
2806 3281 0.811616 CGCCAGGCTGTACATCCTTC 60.812 60.000 15.65 9.60 0.00 3.46
2828 3303 6.749118 GCAGCCTCATTTATTGTGTCTTTTAG 59.251 38.462 0.00 0.00 0.00 1.85
2878 3353 2.311124 GGGGAAATACCTCTGACACG 57.689 55.000 0.00 0.00 35.94 4.49
2952 3427 7.727181 ACGAAGCTAGTCAATACCTTGATATT 58.273 34.615 0.00 0.00 43.08 1.28
2961 3436 8.576936 AGCTATTAAACGAAGCTAGTCAATAC 57.423 34.615 0.00 0.00 44.55 1.89
3024 3500 9.295825 AGGTATTCTCAAAACATTCATACACAA 57.704 29.630 0.00 0.00 0.00 3.33
3030 3506 8.689972 GGATCAAGGTATTCTCAAAACATTCAT 58.310 33.333 0.00 0.00 0.00 2.57
3035 3511 5.222233 TGGGGATCAAGGTATTCTCAAAACA 60.222 40.000 0.00 0.00 0.00 2.83
3039 3515 3.202151 GGTGGGGATCAAGGTATTCTCAA 59.798 47.826 0.00 0.00 0.00 3.02
3446 3922 3.982516 AGGTCTCTAGTGAGCAACCATA 58.017 45.455 22.08 0.00 38.78 2.74
3602 4080 1.286880 CTGCAAAAACAGGAGGGCG 59.713 57.895 0.00 0.00 33.85 6.13
3608 4086 1.069596 GGGCCACTGCAAAAACAGG 59.930 57.895 4.39 0.00 42.21 4.00
3621 4099 3.390521 CACTCGGTAGCTGGGCCA 61.391 66.667 5.85 5.85 0.00 5.36
3766 4244 1.963679 GCAAATCCCAACCAGCGAA 59.036 52.632 0.00 0.00 0.00 4.70
3785 4264 6.418946 AGATAAGGAGAAATTCAGACCCAAC 58.581 40.000 0.00 0.00 0.00 3.77
3835 4315 6.963796 AGCAAGAACTGACATAAGTTTCAAG 58.036 36.000 0.00 0.00 40.48 3.02
3891 4373 0.512952 GCTCAACACACATGACCGTC 59.487 55.000 0.00 0.00 0.00 4.79
3983 4604 4.678840 GCAAATTAAACCAGAGCTCATGGG 60.679 45.833 26.12 21.23 42.48 4.00
3990 4611 3.552604 TGTCGCAAATTAAACCAGAGC 57.447 42.857 0.00 0.00 0.00 4.09
4159 4780 3.093717 TCGTCGAAATCTTCATAGCCC 57.906 47.619 0.00 0.00 0.00 5.19
4195 4816 6.072286 AGCATGGAGAGTTTGTTTAGTCAATG 60.072 38.462 0.00 0.00 0.00 2.82
4196 4817 6.006449 AGCATGGAGAGTTTGTTTAGTCAAT 58.994 36.000 0.00 0.00 0.00 2.57
4223 4844 1.511850 GGCATGTTGTTCTTTTGGCC 58.488 50.000 0.00 0.00 0.00 5.36
4226 4847 2.791383 TCGGGCATGTTGTTCTTTTG 57.209 45.000 0.00 0.00 0.00 2.44
4253 4875 2.352127 GGCTGGTTTGATCTTCACTTGC 60.352 50.000 0.00 0.00 0.00 4.01
4296 4918 5.870433 CGACGTCTGAGACATATATAGGAGT 59.130 44.000 14.70 0.00 32.09 3.85
4297 4919 5.292345 CCGACGTCTGAGACATATATAGGAG 59.708 48.000 14.70 0.00 32.09 3.69
4298 4920 5.176592 CCGACGTCTGAGACATATATAGGA 58.823 45.833 14.70 0.00 32.09 2.94
4299 4921 4.936411 ACCGACGTCTGAGACATATATAGG 59.064 45.833 14.31 7.83 32.09 2.57
4317 4939 1.067565 TGAGAAGCATGTCAGACCGAC 60.068 52.381 0.00 0.00 45.61 4.79
4318 4940 1.256812 TGAGAAGCATGTCAGACCGA 58.743 50.000 0.00 0.00 0.00 4.69
4319 4941 2.084610 TTGAGAAGCATGTCAGACCG 57.915 50.000 0.00 0.00 29.52 4.79
4320 4942 4.005650 TCAATTGAGAAGCATGTCAGACC 58.994 43.478 3.38 0.00 29.52 3.85
4321 4943 5.618056 TTCAATTGAGAAGCATGTCAGAC 57.382 39.130 8.41 0.00 29.52 3.51
4322 4944 6.829229 AATTCAATTGAGAAGCATGTCAGA 57.171 33.333 8.41 0.00 29.52 3.27
4347 4969 1.661463 ATTTCTGAGCTCCACCTCCA 58.339 50.000 12.15 0.00 0.00 3.86
4356 4978 8.767436 GGATAGGAATAGGAATATTTCTGAGCT 58.233 37.037 6.51 0.00 0.00 4.09
4376 4998 4.808414 TGCGAATGAATAGAGGGATAGG 57.192 45.455 0.00 0.00 0.00 2.57
4381 5003 6.808008 ATACAATTGCGAATGAATAGAGGG 57.192 37.500 5.05 0.00 0.00 4.30
4395 5017 1.999024 CCACCGCCAAAATACAATTGC 59.001 47.619 5.05 0.00 0.00 3.56
4407 5029 0.975556 TATCAAGAGCTCCACCGCCA 60.976 55.000 10.93 0.00 0.00 5.69
4409 5031 3.601443 ATATATCAAGAGCTCCACCGC 57.399 47.619 10.93 0.00 0.00 5.68
4410 5032 5.180117 CCAAAATATATCAAGAGCTCCACCG 59.820 44.000 10.93 0.00 0.00 4.94
4417 5039 8.876275 TTTCAATGCCAAAATATATCAAGAGC 57.124 30.769 0.00 0.00 0.00 4.09
4450 5072 6.625362 TCAAGTGTGCTTCACAAATGTTTTA 58.375 32.000 13.23 0.00 46.28 1.52
4471 5093 5.316327 TGTTGCGGCAATGTATTAATCAA 57.684 34.783 19.53 0.00 0.00 2.57
4493 5115 4.734398 TGATTCAGTGTGGCTTTTTGTT 57.266 36.364 0.00 0.00 0.00 2.83
4494 5116 4.081752 TGTTGATTCAGTGTGGCTTTTTGT 60.082 37.500 0.00 0.00 0.00 2.83
4495 5117 4.268405 GTGTTGATTCAGTGTGGCTTTTTG 59.732 41.667 0.00 0.00 0.00 2.44
4496 5118 4.432712 GTGTTGATTCAGTGTGGCTTTTT 58.567 39.130 0.00 0.00 0.00 1.94
4497 5119 3.489059 CGTGTTGATTCAGTGTGGCTTTT 60.489 43.478 0.00 0.00 0.00 2.27
4498 5120 2.033299 CGTGTTGATTCAGTGTGGCTTT 59.967 45.455 0.00 0.00 0.00 3.51
4513 5135 6.481954 AAGAAAGCTTATTACCTCGTGTTG 57.518 37.500 0.00 0.00 31.07 3.33
4530 5152 6.690530 TCTTTTGCATGGATGGTTAAGAAAG 58.309 36.000 0.00 0.00 0.00 2.62
4570 5192 4.697352 CCCTTTTGTTGTACCATCTGAGAG 59.303 45.833 0.00 0.00 0.00 3.20
4605 5227 6.102663 GCTTGTGAGAGTTAAGCTGAAGATA 58.897 40.000 0.00 0.00 42.55 1.98
4649 5271 1.927895 ATCCGAGCTCTTACAAAGCG 58.072 50.000 12.85 0.00 44.59 4.68
4653 5275 4.710375 AGGTTAGAATCCGAGCTCTTACAA 59.290 41.667 12.85 0.00 0.00 2.41
4655 5277 4.922471 AGGTTAGAATCCGAGCTCTTAC 57.078 45.455 12.85 0.00 0.00 2.34
4693 5315 1.852157 ATCAGTCCCAACAGCCCCA 60.852 57.895 0.00 0.00 0.00 4.96
4704 5326 3.274288 GGACAACATTGGAGATCAGTCC 58.726 50.000 0.00 0.00 37.70 3.85
4707 5329 3.937706 GAGTGGACAACATTGGAGATCAG 59.062 47.826 0.00 0.00 0.00 2.90
4727 5349 6.086241 CGGATGTTTTATGTGTTCGTTTTGAG 59.914 38.462 0.00 0.00 0.00 3.02
4728 5350 5.910166 CGGATGTTTTATGTGTTCGTTTTGA 59.090 36.000 0.00 0.00 0.00 2.69
4729 5351 5.683743 ACGGATGTTTTATGTGTTCGTTTTG 59.316 36.000 0.00 0.00 0.00 2.44
4733 5355 3.187637 CCACGGATGTTTTATGTGTTCGT 59.812 43.478 0.00 0.00 0.00 3.85
4734 5356 3.433957 TCCACGGATGTTTTATGTGTTCG 59.566 43.478 0.00 0.00 0.00 3.95
4735 5357 4.214545 TGTCCACGGATGTTTTATGTGTTC 59.785 41.667 0.00 0.00 0.00 3.18
4775 5397 3.936772 TTGAATGGCCGGCTCCACC 62.937 63.158 28.56 9.87 39.25 4.61
4783 5405 3.439540 CACCGGGTTGAATGGCCG 61.440 66.667 6.32 0.00 0.00 6.13
4830 5454 2.165641 ACTGCATGATGAGCATTTGGTG 59.834 45.455 0.00 0.00 41.82 4.17
4840 5464 1.135721 CGGACTGAGACTGCATGATGA 59.864 52.381 0.00 0.00 0.00 2.92
4868 5492 3.846023 GCACGGTTGAATTGCTATCGATG 60.846 47.826 8.54 0.00 33.26 3.84
4873 5497 4.454728 AAATGCACGGTTGAATTGCTAT 57.545 36.364 0.00 0.00 37.16 2.97
4874 5498 3.932545 AAATGCACGGTTGAATTGCTA 57.067 38.095 0.00 0.00 37.16 3.49
4875 5499 2.818130 AAATGCACGGTTGAATTGCT 57.182 40.000 0.00 0.00 37.16 3.91
4876 5500 4.981389 TTTAAATGCACGGTTGAATTGC 57.019 36.364 0.00 0.00 30.49 3.56
4877 5501 5.636965 TGGATTTAAATGCACGGTTGAATTG 59.363 36.000 17.38 0.00 30.49 2.32
4887 5511 6.184706 GCGCTTTTATTGGATTTAAATGCAC 58.815 36.000 20.51 7.79 38.56 4.57
4952 5577 2.302260 TCTCCTACTTCAGCTGATCCG 58.698 52.381 19.04 11.63 0.00 4.18
4967 5592 4.202101 CGTACTTCAGCTGATTCATCTCCT 60.202 45.833 19.04 0.00 0.00 3.69
4968 5593 4.047822 CGTACTTCAGCTGATTCATCTCC 58.952 47.826 19.04 0.00 0.00 3.71
4969 5594 4.926244 TCGTACTTCAGCTGATTCATCTC 58.074 43.478 19.04 4.21 0.00 2.75
4970 5595 4.642437 TCTCGTACTTCAGCTGATTCATCT 59.358 41.667 19.04 0.00 0.00 2.90
4971 5596 4.926244 TCTCGTACTTCAGCTGATTCATC 58.074 43.478 19.04 6.79 0.00 2.92
4972 5597 4.202101 CCTCTCGTACTTCAGCTGATTCAT 60.202 45.833 19.04 6.02 0.00 2.57
4973 5598 3.129462 CCTCTCGTACTTCAGCTGATTCA 59.871 47.826 19.04 1.11 0.00 2.57
4974 5599 3.378742 TCCTCTCGTACTTCAGCTGATTC 59.621 47.826 19.04 7.48 0.00 2.52
4975 5600 3.357203 TCCTCTCGTACTTCAGCTGATT 58.643 45.455 19.04 10.42 0.00 2.57
4976 5601 3.006112 TCCTCTCGTACTTCAGCTGAT 57.994 47.619 19.04 6.10 0.00 2.90
4977 5602 2.491675 TCCTCTCGTACTTCAGCTGA 57.508 50.000 13.74 13.74 0.00 4.26
4978 5603 3.129462 TCATTCCTCTCGTACTTCAGCTG 59.871 47.826 7.63 7.63 0.00 4.24
4979 5604 3.357203 TCATTCCTCTCGTACTTCAGCT 58.643 45.455 0.00 0.00 0.00 4.24
4980 5605 3.701241 CTCATTCCTCTCGTACTTCAGC 58.299 50.000 0.00 0.00 0.00 4.26
4981 5606 3.380004 AGCTCATTCCTCTCGTACTTCAG 59.620 47.826 0.00 0.00 0.00 3.02
4982 5607 3.357203 AGCTCATTCCTCTCGTACTTCA 58.643 45.455 0.00 0.00 0.00 3.02
4983 5608 3.378742 TGAGCTCATTCCTCTCGTACTTC 59.621 47.826 13.74 0.00 0.00 3.01
4984 5609 3.357203 TGAGCTCATTCCTCTCGTACTT 58.643 45.455 13.74 0.00 0.00 2.24
4985 5610 3.006112 TGAGCTCATTCCTCTCGTACT 57.994 47.619 13.74 0.00 0.00 2.73
4986 5611 3.784701 TTGAGCTCATTCCTCTCGTAC 57.215 47.619 19.04 0.00 0.00 3.67
4987 5612 4.220821 ACTTTTGAGCTCATTCCTCTCGTA 59.779 41.667 19.04 0.00 0.00 3.43
4988 5613 3.007398 ACTTTTGAGCTCATTCCTCTCGT 59.993 43.478 19.04 3.91 0.00 4.18
5052 5677 7.886629 AATTGCCTTGATCTTATGAAGCTTA 57.113 32.000 0.00 0.00 0.00 3.09
5065 5690 8.462016 GTGTTAGTCTTCAATAATTGCCTTGAT 58.538 33.333 0.00 0.00 31.83 2.57
5066 5691 7.665559 AGTGTTAGTCTTCAATAATTGCCTTGA 59.334 33.333 0.00 0.00 0.00 3.02
5067 5692 7.820648 AGTGTTAGTCTTCAATAATTGCCTTG 58.179 34.615 0.00 0.00 0.00 3.61
5068 5693 9.686683 ATAGTGTTAGTCTTCAATAATTGCCTT 57.313 29.630 0.00 0.00 0.00 4.35
5069 5694 9.686683 AATAGTGTTAGTCTTCAATAATTGCCT 57.313 29.630 0.00 0.00 0.00 4.75
5144 5769 7.376615 ACTAAACATAGCAGTTTAACTCGACT 58.623 34.615 0.00 0.00 41.78 4.18
5147 5772 8.014322 TCAACTAAACATAGCAGTTTAACTCG 57.986 34.615 0.00 0.00 41.78 4.18
5177 5852 7.148689 CGGTTTAACAACTGACAAGATAGGTAC 60.149 40.741 0.00 0.00 41.33 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.