Multiple sequence alignment - TraesCS7B01G390400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G390400 chr7B 100.000 3188 0 0 1 3188 656530595 656527408 0.000000e+00 5888.0
1 TraesCS7B01G390400 chr7B 83.002 1659 213 30 933 2538 657663356 657661714 0.000000e+00 1437.0
2 TraesCS7B01G390400 chr7B 82.092 1625 199 42 977 2521 657313541 657315153 0.000000e+00 1304.0
3 TraesCS7B01G390400 chr7B 80.920 1630 213 53 901 2466 657084529 657086124 0.000000e+00 1197.0
4 TraesCS7B01G390400 chr7B 77.388 1937 275 87 923 2764 656928715 656930583 0.000000e+00 1000.0
5 TraesCS7B01G390400 chr7B 87.731 595 55 7 91 670 534011160 534010569 0.000000e+00 678.0
6 TraesCS7B01G390400 chr7B 92.000 275 22 0 987 1261 657317995 657318269 1.390000e-103 387.0
7 TraesCS7B01G390400 chr7B 86.973 261 27 3 2212 2465 657077191 657077451 1.450000e-73 287.0
8 TraesCS7B01G390400 chr7B 77.419 310 25 20 2494 2767 656550798 656550498 3.310000e-30 143.0
9 TraesCS7B01G390400 chr7B 85.612 139 14 3 538 670 534010453 534010315 1.190000e-29 141.0
10 TraesCS7B01G390400 chr7B 100.000 44 0 0 1 44 666612676 666612719 7.330000e-12 82.4
11 TraesCS7B01G390400 chr7B 100.000 32 0 0 2470 2501 656547106 656547075 3.430000e-05 60.2
12 TraesCS7B01G390400 chr7A 82.995 1870 215 44 1011 2823 677825336 677827159 0.000000e+00 1596.0
13 TraesCS7B01G390400 chr7A 83.668 1592 192 35 1004 2537 678146209 678144628 0.000000e+00 1437.0
14 TraesCS7B01G390400 chr7A 82.907 1252 173 23 975 2192 677833014 677834258 0.000000e+00 1088.0
15 TraesCS7B01G390400 chr7A 76.900 1987 284 88 893 2767 677723851 677721928 0.000000e+00 965.0
16 TraesCS7B01G390400 chr7A 76.948 1874 267 77 886 2648 677821249 677823068 0.000000e+00 915.0
17 TraesCS7B01G390400 chr7A 78.340 1265 198 34 975 2192 677838965 677840200 0.000000e+00 749.0
18 TraesCS7B01G390400 chr7A 86.420 567 45 13 2645 3188 677721589 677721032 2.740000e-165 592.0
19 TraesCS7B01G390400 chr7A 75.744 1142 178 43 1011 2102 677995478 677994386 1.720000e-132 483.0
20 TraesCS7B01G390400 chr7A 84.416 231 24 4 2927 3157 677827247 677827465 1.930000e-52 217.0
21 TraesCS7B01G390400 chr7A 81.250 176 15 9 3001 3168 677823699 677823864 3.340000e-25 126.0
22 TraesCS7B01G390400 chr7A 97.727 44 1 0 1 44 287237398 287237441 3.410000e-10 76.8
23 TraesCS7B01G390400 chr7D 80.367 1905 251 68 972 2786 586708146 586710017 0.000000e+00 1332.0
24 TraesCS7B01G390400 chr7D 81.893 1690 188 45 1011 2648 586501881 586500258 0.000000e+00 1317.0
25 TraesCS7B01G390400 chr7D 81.579 1520 204 35 1011 2466 586700213 586701720 0.000000e+00 1186.0
26 TraesCS7B01G390400 chr7D 78.504 1270 193 49 972 2192 586754311 586755549 0.000000e+00 760.0
27 TraesCS7B01G390400 chr7D 77.559 1270 184 50 1273 2459 586688967 586690218 0.000000e+00 673.0
28 TraesCS7B01G390400 chr7D 88.395 517 29 13 2693 3188 586500030 586499524 7.610000e-166 593.0
29 TraesCS7B01G390400 chr7D 87.500 456 49 8 91 542 638362811 638363262 1.310000e-143 520.0
30 TraesCS7B01G390400 chr7D 82.428 552 76 8 975 1526 586745744 586746274 2.240000e-126 462.0
31 TraesCS7B01G390400 chr4B 87.731 595 55 7 91 670 628559060 628558469 0.000000e+00 678.0
32 TraesCS7B01G390400 chr4B 84.173 139 16 1 538 670 628558352 628558214 2.580000e-26 130.0
33 TraesCS7B01G390400 chr4B 100.000 44 0 0 1 44 51034597 51034554 7.330000e-12 82.4
34 TraesCS7B01G390400 chr3B 88.840 457 41 9 91 542 762098222 762098673 1.290000e-153 553.0
35 TraesCS7B01G390400 chr1D 87.885 454 50 5 91 542 386750709 386751159 2.180000e-146 529.0
36 TraesCS7B01G390400 chr3D 87.004 454 50 6 91 542 484303543 484303097 1.320000e-138 503.0
37 TraesCS7B01G390400 chr6D 82.609 598 70 12 91 668 157979076 157978493 6.140000e-137 497.0
38 TraesCS7B01G390400 chr6B 82.689 543 63 9 91 617 285226634 285226107 1.350000e-123 453.0
39 TraesCS7B01G390400 chr2B 84.735 452 43 5 91 542 11415996 11415571 2.270000e-116 429.0
40 TraesCS7B01G390400 chr2B 76.946 334 60 10 91 411 754611368 754611039 1.180000e-39 174.0
41 TraesCS7B01G390400 chr1B 86.760 287 37 1 91 377 624092420 624092135 5.130000e-83 318.0
42 TraesCS7B01G390400 chr3A 78.261 322 56 12 91 405 416138378 416138064 9.020000e-46 195.0
43 TraesCS7B01G390400 chr4A 100.000 44 0 0 1 44 590351496 590351453 7.330000e-12 82.4
44 TraesCS7B01G390400 chr2A 100.000 44 0 0 1 44 114336905 114336862 7.330000e-12 82.4
45 TraesCS7B01G390400 chr1A 94.000 50 3 0 748 797 568520965 568520916 3.410000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G390400 chr7B 656527408 656530595 3187 True 5888.0 5888 100.00000 1 3188 1 chr7B.!!$R1 3187
1 TraesCS7B01G390400 chr7B 657661714 657663356 1642 True 1437.0 1437 83.00200 933 2538 1 chr7B.!!$R2 1605
2 TraesCS7B01G390400 chr7B 657084529 657086124 1595 False 1197.0 1197 80.92000 901 2466 1 chr7B.!!$F3 1565
3 TraesCS7B01G390400 chr7B 656928715 656930583 1868 False 1000.0 1000 77.38800 923 2764 1 chr7B.!!$F1 1841
4 TraesCS7B01G390400 chr7B 657313541 657318269 4728 False 845.5 1304 87.04600 977 2521 2 chr7B.!!$F5 1544
5 TraesCS7B01G390400 chr7B 534010315 534011160 845 True 409.5 678 86.67150 91 670 2 chr7B.!!$R3 579
6 TraesCS7B01G390400 chr7A 678144628 678146209 1581 True 1437.0 1437 83.66800 1004 2537 1 chr7A.!!$R2 1533
7 TraesCS7B01G390400 chr7A 677833014 677834258 1244 False 1088.0 1088 82.90700 975 2192 1 chr7A.!!$F2 1217
8 TraesCS7B01G390400 chr7A 677721032 677723851 2819 True 778.5 965 81.66000 893 3188 2 chr7A.!!$R3 2295
9 TraesCS7B01G390400 chr7A 677838965 677840200 1235 False 749.0 749 78.34000 975 2192 1 chr7A.!!$F3 1217
10 TraesCS7B01G390400 chr7A 677821249 677827465 6216 False 713.5 1596 81.40225 886 3168 4 chr7A.!!$F4 2282
11 TraesCS7B01G390400 chr7A 677994386 677995478 1092 True 483.0 483 75.74400 1011 2102 1 chr7A.!!$R1 1091
12 TraesCS7B01G390400 chr7D 586708146 586710017 1871 False 1332.0 1332 80.36700 972 2786 1 chr7D.!!$F3 1814
13 TraesCS7B01G390400 chr7D 586700213 586701720 1507 False 1186.0 1186 81.57900 1011 2466 1 chr7D.!!$F2 1455
14 TraesCS7B01G390400 chr7D 586499524 586501881 2357 True 955.0 1317 85.14400 1011 3188 2 chr7D.!!$R1 2177
15 TraesCS7B01G390400 chr7D 586754311 586755549 1238 False 760.0 760 78.50400 972 2192 1 chr7D.!!$F5 1220
16 TraesCS7B01G390400 chr7D 586688967 586690218 1251 False 673.0 673 77.55900 1273 2459 1 chr7D.!!$F1 1186
17 TraesCS7B01G390400 chr7D 586745744 586746274 530 False 462.0 462 82.42800 975 1526 1 chr7D.!!$F4 551
18 TraesCS7B01G390400 chr4B 628558214 628559060 846 True 404.0 678 85.95200 91 670 2 chr4B.!!$R2 579
19 TraesCS7B01G390400 chr6D 157978493 157979076 583 True 497.0 497 82.60900 91 668 1 chr6D.!!$R1 577
20 TraesCS7B01G390400 chr6B 285226107 285226634 527 True 453.0 453 82.68900 91 617 1 chr6B.!!$R1 526


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 951 0.036022 GCTGAGACTGGGCTGAAACT 59.964 55.0 0.0 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2414 6909 0.322187 AGGTACACACGGAAATGGGC 60.322 55.0 0.0 0.0 0.0 5.36 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.837896 GAAGTCCAATATTTAGCTGGGC 57.162 45.455 0.00 0.00 34.93 5.36
23 24 3.825328 AGTCCAATATTTAGCTGGGCTG 58.175 45.455 0.00 0.00 43.54 4.85
24 25 2.887152 GTCCAATATTTAGCTGGGCTGG 59.113 50.000 0.00 0.00 40.10 4.85
25 26 2.158475 TCCAATATTTAGCTGGGCTGGG 60.158 50.000 0.00 0.00 40.10 4.45
26 27 1.615392 CAATATTTAGCTGGGCTGGGC 59.385 52.381 0.00 0.00 40.10 5.36
36 37 3.416351 GGCTGGGCCCTTAAGAGT 58.584 61.111 25.70 0.00 44.06 3.24
37 38 2.616489 GGCTGGGCCCTTAAGAGTA 58.384 57.895 25.70 0.00 44.06 2.59
38 39 0.470341 GGCTGGGCCCTTAAGAGTAG 59.530 60.000 25.70 10.50 44.06 2.57
39 40 1.205055 GCTGGGCCCTTAAGAGTAGT 58.795 55.000 25.70 0.00 0.00 2.73
40 41 2.395619 GCTGGGCCCTTAAGAGTAGTA 58.604 52.381 25.70 0.00 0.00 1.82
41 42 2.365941 GCTGGGCCCTTAAGAGTAGTAG 59.634 54.545 25.70 8.26 0.00 2.57
42 43 3.644335 CTGGGCCCTTAAGAGTAGTAGT 58.356 50.000 25.70 0.00 0.00 2.73
43 44 4.801164 CTGGGCCCTTAAGAGTAGTAGTA 58.199 47.826 25.70 0.00 0.00 1.82
44 45 4.801164 TGGGCCCTTAAGAGTAGTAGTAG 58.199 47.826 25.70 0.00 0.00 2.57
45 46 4.231426 TGGGCCCTTAAGAGTAGTAGTAGT 59.769 45.833 25.70 0.00 0.00 2.73
46 47 5.433051 TGGGCCCTTAAGAGTAGTAGTAGTA 59.567 44.000 25.70 0.00 0.00 1.82
47 48 6.003326 GGGCCCTTAAGAGTAGTAGTAGTAG 58.997 48.000 17.04 0.00 0.00 2.57
48 49 6.410272 GGGCCCTTAAGAGTAGTAGTAGTAGT 60.410 46.154 17.04 0.00 0.00 2.73
49 50 7.202139 GGGCCCTTAAGAGTAGTAGTAGTAGTA 60.202 44.444 17.04 0.00 0.00 1.82
50 51 7.877612 GGCCCTTAAGAGTAGTAGTAGTAGTAG 59.122 44.444 3.36 0.00 0.00 2.57
51 52 8.646900 GCCCTTAAGAGTAGTAGTAGTAGTAGA 58.353 40.741 3.36 0.00 0.00 2.59
56 57 8.816640 AAGAGTAGTAGTAGTAGTAGATTCGC 57.183 38.462 0.00 0.00 0.00 4.70
57 58 7.378181 AGAGTAGTAGTAGTAGTAGATTCGCC 58.622 42.308 0.00 0.00 0.00 5.54
58 59 6.155827 AGTAGTAGTAGTAGTAGATTCGCCG 58.844 44.000 0.00 0.00 0.00 6.46
59 60 4.954875 AGTAGTAGTAGTAGATTCGCCGT 58.045 43.478 0.00 0.00 0.00 5.68
60 61 5.363939 AGTAGTAGTAGTAGATTCGCCGTT 58.636 41.667 0.00 0.00 0.00 4.44
61 62 4.548991 AGTAGTAGTAGATTCGCCGTTG 57.451 45.455 0.00 0.00 0.00 4.10
62 63 3.944015 AGTAGTAGTAGATTCGCCGTTGT 59.056 43.478 0.00 0.00 0.00 3.32
63 64 3.417690 AGTAGTAGATTCGCCGTTGTC 57.582 47.619 0.00 0.00 0.00 3.18
64 65 3.015327 AGTAGTAGATTCGCCGTTGTCT 58.985 45.455 0.00 0.00 0.00 3.41
65 66 2.279582 AGTAGATTCGCCGTTGTCTG 57.720 50.000 0.00 0.00 0.00 3.51
66 67 1.544691 AGTAGATTCGCCGTTGTCTGT 59.455 47.619 0.00 0.00 0.00 3.41
67 68 2.751259 AGTAGATTCGCCGTTGTCTGTA 59.249 45.455 0.00 0.00 0.00 2.74
68 69 1.992170 AGATTCGCCGTTGTCTGTAC 58.008 50.000 0.00 0.00 0.00 2.90
69 70 0.997196 GATTCGCCGTTGTCTGTACC 59.003 55.000 0.00 0.00 0.00 3.34
70 71 0.319083 ATTCGCCGTTGTCTGTACCA 59.681 50.000 0.00 0.00 0.00 3.25
71 72 0.319211 TTCGCCGTTGTCTGTACCAG 60.319 55.000 0.00 0.00 0.00 4.00
72 73 1.006571 CGCCGTTGTCTGTACCAGT 60.007 57.895 0.00 0.00 32.61 4.00
73 74 0.241749 CGCCGTTGTCTGTACCAGTA 59.758 55.000 0.00 0.00 32.61 2.74
74 75 1.135199 CGCCGTTGTCTGTACCAGTAT 60.135 52.381 0.00 0.00 32.61 2.12
75 76 2.537401 GCCGTTGTCTGTACCAGTATC 58.463 52.381 0.00 0.00 32.61 2.24
76 77 2.094390 GCCGTTGTCTGTACCAGTATCA 60.094 50.000 0.00 0.00 32.61 2.15
77 78 3.615592 GCCGTTGTCTGTACCAGTATCAA 60.616 47.826 0.00 0.00 32.61 2.57
78 79 4.562082 CCGTTGTCTGTACCAGTATCAAA 58.438 43.478 0.00 0.00 32.61 2.69
79 80 4.387862 CCGTTGTCTGTACCAGTATCAAAC 59.612 45.833 0.00 0.00 32.61 2.93
80 81 4.986034 CGTTGTCTGTACCAGTATCAAACA 59.014 41.667 0.00 0.00 32.61 2.83
81 82 5.637810 CGTTGTCTGTACCAGTATCAAACAT 59.362 40.000 0.00 0.00 32.61 2.71
82 83 6.809689 CGTTGTCTGTACCAGTATCAAACATA 59.190 38.462 0.00 0.00 32.61 2.29
83 84 7.491372 CGTTGTCTGTACCAGTATCAAACATAT 59.509 37.037 0.00 0.00 32.61 1.78
84 85 9.811995 GTTGTCTGTACCAGTATCAAACATATA 57.188 33.333 0.00 0.00 32.61 0.86
180 181 5.281314 AGATAACTATCAAGTGGGTGGTCT 58.719 41.667 0.00 0.00 35.62 3.85
182 183 2.621070 ACTATCAAGTGGGTGGTCTGT 58.379 47.619 0.00 0.00 33.57 3.41
282 283 8.021396 AGCTCTAATTATTTGACCGTTTGTTTC 58.979 33.333 0.00 0.00 0.00 2.78
297 298 2.577700 TGTTTCACCGTTAACTGGCAT 58.422 42.857 14.00 0.00 0.00 4.40
330 331 8.739039 CCCATATGTCAGTGTATTTCTGAAAAA 58.261 33.333 6.95 0.00 42.42 1.94
342 343 6.661304 ATTTCTGAAAAACAATCAGCTCCT 57.339 33.333 6.95 0.00 43.19 3.69
346 348 5.593909 TCTGAAAAACAATCAGCTCCTTGAA 59.406 36.000 10.90 0.00 43.19 2.69
554 820 1.147600 GAGGTGACGTGTTGGGGTT 59.852 57.895 0.00 0.00 0.00 4.11
599 865 3.777925 CGTTGACGCCTTCGCCAG 61.778 66.667 0.00 0.00 39.84 4.85
600 866 4.090057 GTTGACGCCTTCGCCAGC 62.090 66.667 0.00 0.00 39.84 4.85
605 871 4.767255 CGCCTTCGCCAGCCTTCT 62.767 66.667 0.00 0.00 0.00 2.85
606 872 2.821810 GCCTTCGCCAGCCTTCTC 60.822 66.667 0.00 0.00 0.00 2.87
607 873 2.510238 CCTTCGCCAGCCTTCTCG 60.510 66.667 0.00 0.00 0.00 4.04
608 874 2.573869 CTTCGCCAGCCTTCTCGA 59.426 61.111 0.00 0.00 0.00 4.04
609 875 1.518133 CTTCGCCAGCCTTCTCGAG 60.518 63.158 5.93 5.93 32.31 4.04
610 876 3.649277 TTCGCCAGCCTTCTCGAGC 62.649 63.158 7.81 0.00 32.31 5.03
611 877 4.140599 CGCCAGCCTTCTCGAGCT 62.141 66.667 7.81 0.00 40.89 4.09
612 878 2.202864 GCCAGCCTTCTCGAGCTC 60.203 66.667 7.81 2.73 37.18 4.09
613 879 2.103934 CCAGCCTTCTCGAGCTCG 59.896 66.667 30.03 30.03 37.18 5.03
614 880 2.103934 CAGCCTTCTCGAGCTCGG 59.896 66.667 33.98 24.14 37.18 4.63
615 881 3.832492 AGCCTTCTCGAGCTCGGC 61.832 66.667 33.98 27.36 40.99 5.54
617 883 4.560856 CCTTCTCGAGCTCGGCGG 62.561 72.222 33.98 23.49 40.29 6.13
618 884 4.560856 CTTCTCGAGCTCGGCGGG 62.561 72.222 33.98 20.99 40.29 6.13
627 893 4.821589 CTCGGCGGGGCTGAAGAC 62.822 72.222 7.21 0.00 43.76 3.01
635 901 4.077188 GGCTGAAGACGCGTGCAC 62.077 66.667 20.70 6.82 0.00 4.57
636 902 4.077188 GCTGAAGACGCGTGCACC 62.077 66.667 20.70 0.63 0.00 5.01
637 903 3.414700 CTGAAGACGCGTGCACCC 61.415 66.667 20.70 0.13 0.00 4.61
638 904 3.865929 CTGAAGACGCGTGCACCCT 62.866 63.158 20.70 3.34 0.00 4.34
639 905 3.414700 GAAGACGCGTGCACCCTG 61.415 66.667 20.70 3.52 0.00 4.45
654 920 4.694233 CTGCGCCACTGCTGGAGT 62.694 66.667 4.18 0.00 40.55 3.85
660 926 3.337619 CACTGCTGGAGTGTGTGC 58.662 61.111 19.70 0.00 46.30 4.57
661 927 2.111878 ACTGCTGGAGTGTGTGCC 59.888 61.111 0.00 0.00 31.75 5.01
662 928 2.429058 CTGCTGGAGTGTGTGCCT 59.571 61.111 0.00 0.00 0.00 4.75
663 929 1.670406 CTGCTGGAGTGTGTGCCTC 60.670 63.158 0.00 0.00 0.00 4.70
664 930 2.109517 CTGCTGGAGTGTGTGCCTCT 62.110 60.000 0.00 0.00 0.00 3.69
665 931 1.375268 GCTGGAGTGTGTGCCTCTC 60.375 63.158 0.00 0.00 0.00 3.20
666 932 1.080230 CTGGAGTGTGTGCCTCTCG 60.080 63.158 0.00 0.00 0.00 4.04
667 933 2.433318 GGAGTGTGTGCCTCTCGC 60.433 66.667 0.00 0.00 38.31 5.03
668 934 2.653702 GAGTGTGTGCCTCTCGCT 59.346 61.111 0.00 0.00 38.78 4.93
669 935 1.735920 GAGTGTGTGCCTCTCGCTG 60.736 63.158 0.26 0.00 38.78 5.18
670 936 2.147315 GAGTGTGTGCCTCTCGCTGA 62.147 60.000 0.26 0.00 38.78 4.26
671 937 1.735920 GTGTGTGCCTCTCGCTGAG 60.736 63.158 0.00 0.00 42.30 3.35
672 938 1.903404 TGTGTGCCTCTCGCTGAGA 60.903 57.895 7.79 7.79 45.39 3.27
673 939 1.445238 GTGTGCCTCTCGCTGAGAC 60.445 63.158 6.80 0.00 45.39 3.36
674 940 1.604879 TGTGCCTCTCGCTGAGACT 60.605 57.895 6.80 0.00 45.39 3.24
675 941 1.153862 GTGCCTCTCGCTGAGACTG 60.154 63.158 6.80 1.65 45.39 3.51
676 942 2.346541 TGCCTCTCGCTGAGACTGG 61.347 63.158 6.80 6.77 45.39 4.00
677 943 3.074999 GCCTCTCGCTGAGACTGGG 62.075 68.421 12.42 10.03 45.39 4.45
678 944 2.493973 CTCTCGCTGAGACTGGGC 59.506 66.667 4.47 0.00 45.39 5.36
679 945 2.036414 TCTCGCTGAGACTGGGCT 59.964 61.111 4.47 0.00 33.35 5.19
680 946 2.183811 CTCGCTGAGACTGGGCTG 59.816 66.667 0.00 0.00 0.00 4.85
681 947 2.283173 TCGCTGAGACTGGGCTGA 60.283 61.111 0.00 0.00 0.00 4.26
682 948 1.881903 CTCGCTGAGACTGGGCTGAA 61.882 60.000 0.00 0.00 0.00 3.02
683 949 1.004560 CGCTGAGACTGGGCTGAAA 60.005 57.895 0.00 0.00 0.00 2.69
684 950 1.294659 CGCTGAGACTGGGCTGAAAC 61.295 60.000 0.00 0.00 0.00 2.78
685 951 0.036022 GCTGAGACTGGGCTGAAACT 59.964 55.000 0.00 0.00 0.00 2.66
686 952 1.544314 GCTGAGACTGGGCTGAAACTT 60.544 52.381 0.00 0.00 0.00 2.66
687 953 2.421619 CTGAGACTGGGCTGAAACTTC 58.578 52.381 0.00 0.00 0.00 3.01
688 954 2.038295 CTGAGACTGGGCTGAAACTTCT 59.962 50.000 0.00 0.00 0.00 2.85
689 955 2.224378 TGAGACTGGGCTGAAACTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
695 961 2.616969 GCTGAAACTTCTGCGTGGA 58.383 52.632 5.69 0.00 41.20 4.02
696 962 0.944386 GCTGAAACTTCTGCGTGGAA 59.056 50.000 5.69 0.00 41.20 3.53
697 963 1.069636 GCTGAAACTTCTGCGTGGAAG 60.070 52.381 14.66 14.66 45.68 3.46
698 964 2.483876 CTGAAACTTCTGCGTGGAAGA 58.516 47.619 20.40 1.76 43.70 2.87
699 965 3.070018 CTGAAACTTCTGCGTGGAAGAT 58.930 45.455 20.40 10.19 43.70 2.40
700 966 3.067106 TGAAACTTCTGCGTGGAAGATC 58.933 45.455 20.40 17.39 43.70 2.75
701 967 1.714794 AACTTCTGCGTGGAAGATCG 58.285 50.000 20.40 2.26 43.70 3.69
702 968 0.603569 ACTTCTGCGTGGAAGATCGT 59.396 50.000 20.40 0.00 43.70 3.73
703 969 0.994995 CTTCTGCGTGGAAGATCGTG 59.005 55.000 12.05 0.00 43.70 4.35
704 970 0.389817 TTCTGCGTGGAAGATCGTGG 60.390 55.000 0.00 0.00 0.00 4.94
705 971 2.434185 TGCGTGGAAGATCGTGGC 60.434 61.111 0.00 0.00 0.00 5.01
706 972 2.125512 GCGTGGAAGATCGTGGCT 60.126 61.111 0.00 0.00 0.00 4.75
707 973 2.456119 GCGTGGAAGATCGTGGCTG 61.456 63.158 0.00 0.00 0.00 4.85
708 974 1.079819 CGTGGAAGATCGTGGCTGT 60.080 57.895 0.00 0.00 0.00 4.40
709 975 1.078759 CGTGGAAGATCGTGGCTGTC 61.079 60.000 0.00 0.00 0.00 3.51
710 976 0.037326 GTGGAAGATCGTGGCTGTCA 60.037 55.000 0.00 0.00 0.00 3.58
711 977 0.904649 TGGAAGATCGTGGCTGTCAT 59.095 50.000 0.00 0.00 0.00 3.06
712 978 1.278985 TGGAAGATCGTGGCTGTCATT 59.721 47.619 0.00 0.00 0.00 2.57
713 979 1.667724 GGAAGATCGTGGCTGTCATTG 59.332 52.381 0.00 0.00 0.00 2.82
714 980 1.667724 GAAGATCGTGGCTGTCATTGG 59.332 52.381 0.00 0.00 0.00 3.16
715 981 0.745845 AGATCGTGGCTGTCATTGGC 60.746 55.000 0.00 0.00 0.00 4.52
716 982 2.040213 GATCGTGGCTGTCATTGGCG 62.040 60.000 0.00 0.00 0.00 5.69
717 983 4.465512 CGTGGCTGTCATTGGCGC 62.466 66.667 0.00 0.00 37.18 6.53
718 984 4.120331 GTGGCTGTCATTGGCGCC 62.120 66.667 22.73 22.73 42.78 6.53
721 987 3.869272 GCTGTCATTGGCGCCGAG 61.869 66.667 23.38 14.33 0.00 4.63
722 988 2.125552 CTGTCATTGGCGCCGAGA 60.126 61.111 23.38 16.57 0.00 4.04
723 989 1.741401 CTGTCATTGGCGCCGAGAA 60.741 57.895 23.38 11.68 0.00 2.87
724 990 1.699656 CTGTCATTGGCGCCGAGAAG 61.700 60.000 23.38 14.35 0.00 2.85
725 991 2.819595 TCATTGGCGCCGAGAAGC 60.820 61.111 23.38 0.00 0.00 3.86
726 992 2.821366 CATTGGCGCCGAGAAGCT 60.821 61.111 23.38 0.85 0.00 3.74
727 993 2.821366 ATTGGCGCCGAGAAGCTG 60.821 61.111 23.38 0.00 0.00 4.24
728 994 3.612247 ATTGGCGCCGAGAAGCTGT 62.612 57.895 23.38 0.00 0.00 4.40
729 995 3.825160 TTGGCGCCGAGAAGCTGTT 62.825 57.895 23.90 0.00 0.00 3.16
730 996 3.793144 GGCGCCGAGAAGCTGTTG 61.793 66.667 12.58 0.00 0.00 3.33
731 997 4.451652 GCGCCGAGAAGCTGTTGC 62.452 66.667 0.00 0.00 40.05 4.17
760 1026 8.919777 TTTTAGAAGAATTAATAGGGCTAGCC 57.080 34.615 26.55 26.55 0.00 3.93
772 1038 2.776312 GGCTAGCCCGCTTAATTTTC 57.224 50.000 24.19 0.00 0.00 2.29
773 1039 2.298610 GGCTAGCCCGCTTAATTTTCT 58.701 47.619 24.19 0.00 0.00 2.52
774 1040 2.688446 GGCTAGCCCGCTTAATTTTCTT 59.312 45.455 24.19 0.00 0.00 2.52
775 1041 3.243101 GGCTAGCCCGCTTAATTTTCTTC 60.243 47.826 24.19 0.00 0.00 2.87
776 1042 3.628032 GCTAGCCCGCTTAATTTTCTTCT 59.372 43.478 2.29 0.00 0.00 2.85
777 1043 4.096532 GCTAGCCCGCTTAATTTTCTTCTT 59.903 41.667 2.29 0.00 0.00 2.52
778 1044 4.440839 AGCCCGCTTAATTTTCTTCTTG 57.559 40.909 0.00 0.00 0.00 3.02
779 1045 3.826729 AGCCCGCTTAATTTTCTTCTTGT 59.173 39.130 0.00 0.00 0.00 3.16
780 1046 4.082733 AGCCCGCTTAATTTTCTTCTTGTC 60.083 41.667 0.00 0.00 0.00 3.18
781 1047 4.733850 CCCGCTTAATTTTCTTCTTGTCC 58.266 43.478 0.00 0.00 0.00 4.02
782 1048 4.217550 CCCGCTTAATTTTCTTCTTGTCCA 59.782 41.667 0.00 0.00 0.00 4.02
783 1049 5.278758 CCCGCTTAATTTTCTTCTTGTCCAA 60.279 40.000 0.00 0.00 0.00 3.53
784 1050 6.389906 CCGCTTAATTTTCTTCTTGTCCAAT 58.610 36.000 0.00 0.00 0.00 3.16
785 1051 6.308766 CCGCTTAATTTTCTTCTTGTCCAATG 59.691 38.462 0.00 0.00 0.00 2.82
786 1052 6.308766 CGCTTAATTTTCTTCTTGTCCAATGG 59.691 38.462 0.00 0.00 0.00 3.16
787 1053 6.591448 GCTTAATTTTCTTCTTGTCCAATGGG 59.409 38.462 0.00 0.00 0.00 4.00
788 1054 7.525360 GCTTAATTTTCTTCTTGTCCAATGGGA 60.525 37.037 0.00 0.00 42.29 4.37
789 1055 5.990120 ATTTTCTTCTTGTCCAATGGGAG 57.010 39.130 0.00 0.00 46.12 4.30
790 1056 2.496899 TCTTCTTGTCCAATGGGAGC 57.503 50.000 0.00 0.00 46.12 4.70
791 1057 1.704628 TCTTCTTGTCCAATGGGAGCA 59.295 47.619 0.00 0.00 46.12 4.26
792 1058 1.815003 CTTCTTGTCCAATGGGAGCAC 59.185 52.381 0.00 0.00 46.12 4.40
793 1059 0.770499 TCTTGTCCAATGGGAGCACA 59.230 50.000 0.00 0.00 46.12 4.57
794 1060 1.355381 TCTTGTCCAATGGGAGCACAT 59.645 47.619 0.00 0.00 46.12 3.21
795 1061 2.173519 CTTGTCCAATGGGAGCACATT 58.826 47.619 0.00 0.00 46.12 2.71
796 1062 3.010027 TCTTGTCCAATGGGAGCACATTA 59.990 43.478 0.00 0.00 46.12 1.90
797 1063 3.448093 TGTCCAATGGGAGCACATTAA 57.552 42.857 0.00 0.00 46.12 1.40
798 1064 3.772387 TGTCCAATGGGAGCACATTAAA 58.228 40.909 0.00 0.00 46.12 1.52
799 1065 4.155709 TGTCCAATGGGAGCACATTAAAA 58.844 39.130 0.00 0.00 46.12 1.52
800 1066 4.021544 TGTCCAATGGGAGCACATTAAAAC 60.022 41.667 0.00 0.00 46.12 2.43
801 1067 4.021544 GTCCAATGGGAGCACATTAAAACA 60.022 41.667 0.00 0.00 46.12 2.83
802 1068 4.776837 TCCAATGGGAGCACATTAAAACAT 59.223 37.500 0.00 0.00 38.94 2.71
803 1069 5.248020 TCCAATGGGAGCACATTAAAACATT 59.752 36.000 0.00 0.00 38.94 2.71
804 1070 5.352016 CCAATGGGAGCACATTAAAACATTG 59.648 40.000 0.00 0.00 41.94 2.82
805 1071 4.533919 TGGGAGCACATTAAAACATTGG 57.466 40.909 0.00 0.00 0.00 3.16
806 1072 3.260380 TGGGAGCACATTAAAACATTGGG 59.740 43.478 0.00 0.00 0.00 4.12
807 1073 3.513515 GGGAGCACATTAAAACATTGGGA 59.486 43.478 0.00 0.00 0.00 4.37
808 1074 4.162131 GGGAGCACATTAAAACATTGGGAT 59.838 41.667 0.00 0.00 0.00 3.85
809 1075 5.111293 GGAGCACATTAAAACATTGGGATG 58.889 41.667 0.00 0.00 39.25 3.51
810 1076 5.088680 AGCACATTAAAACATTGGGATGG 57.911 39.130 0.00 0.00 37.60 3.51
811 1077 4.080975 AGCACATTAAAACATTGGGATGGG 60.081 41.667 0.00 0.00 37.60 4.00
812 1078 4.081198 GCACATTAAAACATTGGGATGGGA 60.081 41.667 0.00 0.00 37.60 4.37
813 1079 5.396660 GCACATTAAAACATTGGGATGGGAT 60.397 40.000 0.00 0.00 37.60 3.85
814 1080 6.050432 CACATTAAAACATTGGGATGGGATG 58.950 40.000 0.00 0.00 37.60 3.51
815 1081 5.130809 ACATTAAAACATTGGGATGGGATGG 59.869 40.000 0.00 0.00 37.60 3.51
816 1082 1.499368 AAACATTGGGATGGGATGGC 58.501 50.000 0.00 0.00 37.60 4.40
817 1083 0.638292 AACATTGGGATGGGATGGCT 59.362 50.000 0.00 0.00 37.60 4.75
818 1084 1.533187 ACATTGGGATGGGATGGCTA 58.467 50.000 0.00 0.00 37.60 3.93
819 1085 1.858910 ACATTGGGATGGGATGGCTAA 59.141 47.619 0.00 0.00 37.60 3.09
820 1086 2.452047 ACATTGGGATGGGATGGCTAAT 59.548 45.455 0.00 0.00 37.60 1.73
821 1087 2.978156 TTGGGATGGGATGGCTAATC 57.022 50.000 0.00 0.00 34.19 1.75
829 1095 3.188748 GATGGCTAATCCTCCCCCT 57.811 57.895 0.00 0.00 35.26 4.79
830 1096 0.988063 GATGGCTAATCCTCCCCCTC 59.012 60.000 0.00 0.00 35.26 4.30
831 1097 0.476611 ATGGCTAATCCTCCCCCTCC 60.477 60.000 0.00 0.00 35.26 4.30
832 1098 1.848431 GGCTAATCCTCCCCCTCCC 60.848 68.421 0.00 0.00 0.00 4.30
833 1099 1.073706 GCTAATCCTCCCCCTCCCA 60.074 63.158 0.00 0.00 0.00 4.37
834 1100 1.419720 GCTAATCCTCCCCCTCCCAC 61.420 65.000 0.00 0.00 0.00 4.61
835 1101 0.768609 CTAATCCTCCCCCTCCCACC 60.769 65.000 0.00 0.00 0.00 4.61
836 1102 1.243230 TAATCCTCCCCCTCCCACCT 61.243 60.000 0.00 0.00 0.00 4.00
837 1103 2.865183 AATCCTCCCCCTCCCACCTG 62.865 65.000 0.00 0.00 0.00 4.00
844 1110 4.767255 CCTCCCACCTGCAGCGAC 62.767 72.222 8.66 0.00 0.00 5.19
845 1111 4.767255 CTCCCACCTGCAGCGACC 62.767 72.222 8.66 0.00 0.00 4.79
848 1114 4.335647 CCACCTGCAGCGACCCTT 62.336 66.667 8.66 0.00 0.00 3.95
849 1115 2.662596 CACCTGCAGCGACCCTTA 59.337 61.111 8.66 0.00 0.00 2.69
850 1116 1.741770 CACCTGCAGCGACCCTTAC 60.742 63.158 8.66 0.00 0.00 2.34
851 1117 2.125106 CCTGCAGCGACCCTTACC 60.125 66.667 8.66 0.00 0.00 2.85
852 1118 2.660064 CCTGCAGCGACCCTTACCT 61.660 63.158 8.66 0.00 0.00 3.08
853 1119 1.327690 CCTGCAGCGACCCTTACCTA 61.328 60.000 8.66 0.00 0.00 3.08
854 1120 0.535335 CTGCAGCGACCCTTACCTAA 59.465 55.000 0.00 0.00 0.00 2.69
855 1121 0.978151 TGCAGCGACCCTTACCTAAA 59.022 50.000 0.00 0.00 0.00 1.85
856 1122 1.557832 TGCAGCGACCCTTACCTAAAT 59.442 47.619 0.00 0.00 0.00 1.40
857 1123 2.026636 TGCAGCGACCCTTACCTAAATT 60.027 45.455 0.00 0.00 0.00 1.82
858 1124 3.014623 GCAGCGACCCTTACCTAAATTT 58.985 45.455 0.00 0.00 0.00 1.82
859 1125 3.442625 GCAGCGACCCTTACCTAAATTTT 59.557 43.478 0.00 0.00 0.00 1.82
860 1126 4.082408 GCAGCGACCCTTACCTAAATTTTT 60.082 41.667 0.00 0.00 0.00 1.94
906 1172 1.304547 CAGTCCCCACTCCGAGTCT 60.305 63.158 0.00 0.00 0.00 3.24
916 1182 0.754957 CTCCGAGTCTCCAGCTCCAT 60.755 60.000 0.00 0.00 0.00 3.41
924 1190 0.392336 CTCCAGCTCCATAGGCACTC 59.608 60.000 0.00 0.00 41.75 3.51
926 1192 1.068753 CAGCTCCATAGGCACTCCG 59.931 63.158 0.00 0.00 41.75 4.63
927 1193 2.280457 GCTCCATAGGCACTCCGC 60.280 66.667 0.00 0.00 41.75 5.54
1044 1354 3.314331 AGGCTCACCCACGACCTG 61.314 66.667 0.00 0.00 36.11 4.00
1153 1507 2.509336 CGCGCCGGAAGAAGATGT 60.509 61.111 5.05 0.00 0.00 3.06
1246 1624 0.042013 CGAGTACGCGGATCTGTCTC 60.042 60.000 12.47 3.03 0.00 3.36
1261 1639 0.036294 GTCTCCTTTCCCTTGGTCGG 60.036 60.000 0.00 0.00 0.00 4.79
1347 1731 1.139853 GAGGATTCCTGCGATGGACTT 59.860 52.381 10.74 0.00 35.58 3.01
1415 1805 2.437281 ACATGGTCTCCAATCCAGCTAG 59.563 50.000 0.00 0.00 36.95 3.42
1453 1846 1.384989 GCCTCACTCTGGCTACGCTA 61.385 60.000 0.00 0.00 46.38 4.26
1489 1892 2.028748 GCTTACCTGGGTTTCGACAGTA 60.029 50.000 0.00 0.00 32.90 2.74
1537 1940 1.948834 TCGAGTTTGTACACGACTGGA 59.051 47.619 14.10 14.65 41.37 3.86
1538 1941 2.031420 TCGAGTTTGTACACGACTGGAG 60.031 50.000 14.10 7.15 41.37 3.86
1548 1951 2.273179 CGACTGGAGACACCCGGAA 61.273 63.158 0.73 0.00 38.00 4.30
1552 1955 2.048503 GGAGACACCCGGAACACG 60.049 66.667 0.73 0.00 43.80 4.49
1602 2008 8.160106 ACAGAAGTGAGGATTTACTCTTCAAAT 58.840 33.333 0.00 0.00 41.19 2.32
1773 6164 1.153289 CGTCCTGCTGCCAGCTAAT 60.153 57.895 18.96 0.00 42.97 1.73
1784 6175 1.687123 GCCAGCTAATAGTTCCTCGGA 59.313 52.381 0.00 0.00 0.00 4.55
1834 6237 6.979238 GCTATTGTATATCAACTCCCGATACC 59.021 42.308 0.00 0.00 38.97 2.73
1857 6260 4.047822 GCTCAGACCGATCTTTGACTATG 58.952 47.826 0.00 0.00 30.42 2.23
1877 6280 4.325028 TGTTGGTTTACGCTCTTAGTGA 57.675 40.909 0.00 0.00 0.00 3.41
1968 6383 9.783081 AAGCTTTCAAATGTTATTCCAAAGAAT 57.217 25.926 0.00 0.00 44.95 2.40
2036 6472 6.053650 TCTTCATAGCTCATTCAGACAATGG 58.946 40.000 0.00 0.00 0.00 3.16
2102 6542 5.930135 ACATCACCTTGATCATAAGTACCC 58.070 41.667 0.00 0.00 34.28 3.69
2136 6579 5.395103 GCAATTTTTCCCATATGTGCCACTA 60.395 40.000 1.24 0.00 0.00 2.74
2261 6747 1.737838 TTCCAACGGAGATGATGCAC 58.262 50.000 0.00 0.00 31.21 4.57
2355 6845 5.449297 TTGATGTTTCCCTCATGGATGTA 57.551 39.130 0.00 0.00 44.66 2.29
2414 6909 1.396996 GCAACAAGTACGGCTGTATGG 59.603 52.381 9.01 4.31 32.11 2.74
2415 6910 1.396996 CAACAAGTACGGCTGTATGGC 59.603 52.381 9.01 0.00 32.11 4.40
2541 7137 8.141909 GGTATGAGTTGTAGTATGTTCTATGCA 58.858 37.037 0.00 0.00 0.00 3.96
2563 7163 6.789262 GCATTTTGATGTGCAACTAGTAGAT 58.211 36.000 3.59 0.00 40.94 1.98
2593 7208 5.633601 TGAGACGCTTTAGTGTGTTCTATTG 59.366 40.000 0.00 0.00 39.12 1.90
2877 8187 8.202745 AGTATCTAAATTGAAAGTACAGCTGC 57.797 34.615 15.27 0.00 0.00 5.25
2918 8228 6.312399 TCAATGCTTTAACAGTGTTGGTAG 57.688 37.500 18.90 12.80 36.98 3.18
3013 8388 2.091610 TCTAGCAGTCTAGCCCATGTCT 60.092 50.000 0.00 0.00 41.59 3.41
3015 8390 1.484240 AGCAGTCTAGCCCATGTCTTC 59.516 52.381 0.00 0.00 34.23 2.87
3016 8391 1.474143 GCAGTCTAGCCCATGTCTTCC 60.474 57.143 0.00 0.00 0.00 3.46
3031 8406 3.005897 TGTCTTCCTTGTACTCACTGCTC 59.994 47.826 0.00 0.00 0.00 4.26
3045 8444 7.897575 ACTCACTGCTCTAGTTTTTCTATTG 57.102 36.000 0.00 0.00 37.60 1.90
3064 8463 4.524802 TTGGTGGCATCCTGATATTTCT 57.475 40.909 0.00 0.00 0.00 2.52
3171 10545 4.101430 GGAGAGATTGCAGAGAGGATTCTT 59.899 45.833 0.00 0.00 32.53 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.210331 CAGCCCAGCTAAATATTGGACTT 58.790 43.478 0.00 0.00 36.40 3.01
2 3 3.435601 CCAGCCCAGCTAAATATTGGACT 60.436 47.826 0.00 0.00 36.40 3.85
3 4 2.887152 CCAGCCCAGCTAAATATTGGAC 59.113 50.000 0.00 0.00 36.40 4.02
4 5 2.158475 CCCAGCCCAGCTAAATATTGGA 60.158 50.000 0.00 0.00 36.40 3.53
5 6 2.242043 CCCAGCCCAGCTAAATATTGG 58.758 52.381 0.00 0.00 36.40 3.16
6 7 1.615392 GCCCAGCCCAGCTAAATATTG 59.385 52.381 0.00 0.00 36.40 1.90
7 8 1.481242 GGCCCAGCCCAGCTAAATATT 60.481 52.381 0.00 0.00 44.06 1.28
8 9 0.113190 GGCCCAGCCCAGCTAAATAT 59.887 55.000 0.00 0.00 44.06 1.28
9 10 1.536676 GGCCCAGCCCAGCTAAATA 59.463 57.895 0.00 0.00 44.06 1.40
10 11 2.280079 GGCCCAGCCCAGCTAAAT 59.720 61.111 0.00 0.00 44.06 1.40
20 21 1.205055 ACTACTCTTAAGGGCCCAGC 58.795 55.000 27.56 0.00 0.00 4.85
21 22 3.644335 ACTACTACTCTTAAGGGCCCAG 58.356 50.000 27.56 15.16 0.00 4.45
22 23 3.771071 ACTACTACTCTTAAGGGCCCA 57.229 47.619 27.56 0.00 0.00 5.36
23 24 4.802307 ACTACTACTACTCTTAAGGGCCC 58.198 47.826 16.46 16.46 0.00 5.80
24 25 6.600388 ACTACTACTACTACTCTTAAGGGCC 58.400 44.000 1.03 0.00 0.00 5.80
25 26 8.646900 TCTACTACTACTACTACTCTTAAGGGC 58.353 40.741 1.03 0.00 0.00 5.19
30 31 9.906660 GCGAATCTACTACTACTACTACTCTTA 57.093 37.037 0.00 0.00 0.00 2.10
31 32 7.872483 GGCGAATCTACTACTACTACTACTCTT 59.128 40.741 0.00 0.00 0.00 2.85
32 33 7.378181 GGCGAATCTACTACTACTACTACTCT 58.622 42.308 0.00 0.00 0.00 3.24
33 34 6.307800 CGGCGAATCTACTACTACTACTACTC 59.692 46.154 0.00 0.00 0.00 2.59
34 35 6.155827 CGGCGAATCTACTACTACTACTACT 58.844 44.000 0.00 0.00 0.00 2.57
35 36 5.923684 ACGGCGAATCTACTACTACTACTAC 59.076 44.000 16.62 0.00 0.00 2.73
36 37 6.090483 ACGGCGAATCTACTACTACTACTA 57.910 41.667 16.62 0.00 0.00 1.82
37 38 4.954875 ACGGCGAATCTACTACTACTACT 58.045 43.478 16.62 0.00 0.00 2.57
38 39 5.007136 ACAACGGCGAATCTACTACTACTAC 59.993 44.000 16.62 0.00 0.00 2.73
39 40 5.118990 ACAACGGCGAATCTACTACTACTA 58.881 41.667 16.62 0.00 0.00 1.82
40 41 3.944015 ACAACGGCGAATCTACTACTACT 59.056 43.478 16.62 0.00 0.00 2.57
41 42 4.034975 AGACAACGGCGAATCTACTACTAC 59.965 45.833 16.62 0.00 0.00 2.73
42 43 4.034858 CAGACAACGGCGAATCTACTACTA 59.965 45.833 16.62 0.00 0.00 1.82
43 44 3.015327 AGACAACGGCGAATCTACTACT 58.985 45.455 16.62 0.00 0.00 2.57
44 45 3.106672 CAGACAACGGCGAATCTACTAC 58.893 50.000 16.62 0.00 0.00 2.73
45 46 2.751259 ACAGACAACGGCGAATCTACTA 59.249 45.455 16.62 0.00 0.00 1.82
46 47 1.544691 ACAGACAACGGCGAATCTACT 59.455 47.619 16.62 1.94 0.00 2.57
47 48 1.992170 ACAGACAACGGCGAATCTAC 58.008 50.000 16.62 0.00 0.00 2.59
48 49 2.159338 GGTACAGACAACGGCGAATCTA 60.159 50.000 16.62 0.00 0.00 1.98
49 50 1.403780 GGTACAGACAACGGCGAATCT 60.404 52.381 16.62 10.30 0.00 2.40
50 51 0.997196 GGTACAGACAACGGCGAATC 59.003 55.000 16.62 7.86 0.00 2.52
51 52 0.319083 TGGTACAGACAACGGCGAAT 59.681 50.000 16.62 0.00 0.00 3.34
52 53 1.740905 TGGTACAGACAACGGCGAA 59.259 52.632 16.62 0.00 0.00 4.70
53 54 3.445888 TGGTACAGACAACGGCGA 58.554 55.556 16.62 0.00 0.00 5.54
166 167 0.916086 ACAACAGACCACCCACTTGA 59.084 50.000 0.00 0.00 0.00 3.02
224 225 2.620367 GGGCCCAACTGTCATAATCACA 60.620 50.000 19.95 0.00 0.00 3.58
226 227 1.064017 GGGGCCCAACTGTCATAATCA 60.064 52.381 26.86 0.00 0.00 2.57
282 283 0.521291 CCACATGCCAGTTAACGGTG 59.479 55.000 14.94 10.22 0.00 4.94
297 298 1.559219 CACTGACATATGGGTCCCACA 59.441 52.381 14.57 0.04 35.80 4.17
492 495 3.251318 GAGACAGGTCGTGCGACGT 62.251 63.158 16.88 15.03 45.41 4.34
499 502 2.164338 GAGGAAAGAGAGACAGGTCGT 58.836 52.381 0.00 0.00 34.09 4.34
500 503 2.442413 AGAGGAAAGAGAGACAGGTCG 58.558 52.381 0.00 0.00 34.09 4.79
536 539 0.883370 GAACCCCAACACGTCACCTC 60.883 60.000 0.00 0.00 0.00 3.85
554 820 4.087892 GCAAGGAGCTCCGCCTGA 62.088 66.667 26.95 0.00 42.08 3.86
590 856 2.510238 CGAGAAGGCTGGCGAAGG 60.510 66.667 0.00 0.00 0.00 3.46
591 857 1.518133 CTCGAGAAGGCTGGCGAAG 60.518 63.158 6.58 0.00 31.89 3.79
592 858 2.573869 CTCGAGAAGGCTGGCGAA 59.426 61.111 6.58 0.00 31.89 4.70
593 859 4.135153 GCTCGAGAAGGCTGGCGA 62.135 66.667 18.75 6.47 0.00 5.54
594 860 4.140599 AGCTCGAGAAGGCTGGCG 62.141 66.667 18.75 0.00 37.41 5.69
595 861 2.202864 GAGCTCGAGAAGGCTGGC 60.203 66.667 18.75 0.00 39.05 4.85
596 862 2.103934 CGAGCTCGAGAAGGCTGG 59.896 66.667 32.06 4.12 43.02 4.85
597 863 2.103934 CCGAGCTCGAGAAGGCTG 59.896 66.667 36.59 13.86 43.02 4.85
598 864 3.832492 GCCGAGCTCGAGAAGGCT 61.832 66.667 36.59 15.89 44.06 4.58
600 866 4.560856 CCGCCGAGCTCGAGAAGG 62.561 72.222 36.59 26.31 43.02 3.46
601 867 4.560856 CCCGCCGAGCTCGAGAAG 62.561 72.222 36.59 20.69 43.02 2.85
610 876 4.821589 GTCTTCAGCCCCGCCGAG 62.822 72.222 0.00 0.00 0.00 4.63
618 884 4.077188 GTGCACGCGTCTTCAGCC 62.077 66.667 9.86 0.00 0.00 4.85
619 885 4.077188 GGTGCACGCGTCTTCAGC 62.077 66.667 9.86 13.78 0.00 4.26
620 886 3.414700 GGGTGCACGCGTCTTCAG 61.415 66.667 18.81 0.00 0.00 3.02
621 887 3.923864 AGGGTGCACGCGTCTTCA 61.924 61.111 25.95 4.82 0.00 3.02
622 888 3.414700 CAGGGTGCACGCGTCTTC 61.415 66.667 25.95 1.62 0.00 2.87
644 910 2.111878 GGCACACACTCCAGCAGT 59.888 61.111 0.00 0.00 34.67 4.40
645 911 1.670406 GAGGCACACACTCCAGCAG 60.670 63.158 0.00 0.00 0.00 4.24
646 912 2.104572 GAGAGGCACACACTCCAGCA 62.105 60.000 0.00 0.00 35.58 4.41
647 913 1.375268 GAGAGGCACACACTCCAGC 60.375 63.158 0.00 0.00 35.58 4.85
648 914 1.080230 CGAGAGGCACACACTCCAG 60.080 63.158 0.00 0.00 35.58 3.86
649 915 3.051210 CGAGAGGCACACACTCCA 58.949 61.111 0.00 0.00 35.58 3.86
650 916 2.433318 GCGAGAGGCACACACTCC 60.433 66.667 0.00 0.00 42.87 3.85
660 926 3.074999 GCCCAGTCTCAGCGAGAGG 62.075 68.421 8.25 7.82 44.81 3.69
661 927 2.051518 AGCCCAGTCTCAGCGAGAG 61.052 63.158 8.25 5.79 46.14 3.20
662 928 2.036414 AGCCCAGTCTCAGCGAGA 59.964 61.111 4.47 4.47 36.22 4.04
663 929 1.881903 TTCAGCCCAGTCTCAGCGAG 61.882 60.000 0.00 0.00 0.00 5.03
664 930 1.471829 TTTCAGCCCAGTCTCAGCGA 61.472 55.000 0.00 0.00 0.00 4.93
665 931 1.004560 TTTCAGCCCAGTCTCAGCG 60.005 57.895 0.00 0.00 0.00 5.18
666 932 0.036022 AGTTTCAGCCCAGTCTCAGC 59.964 55.000 0.00 0.00 0.00 4.26
667 933 2.038295 AGAAGTTTCAGCCCAGTCTCAG 59.962 50.000 0.00 0.00 0.00 3.35
668 934 2.050144 AGAAGTTTCAGCCCAGTCTCA 58.950 47.619 0.00 0.00 0.00 3.27
669 935 2.421619 CAGAAGTTTCAGCCCAGTCTC 58.578 52.381 0.00 0.00 0.00 3.36
670 936 1.544314 GCAGAAGTTTCAGCCCAGTCT 60.544 52.381 0.00 0.00 34.10 3.24
671 937 0.877743 GCAGAAGTTTCAGCCCAGTC 59.122 55.000 0.00 0.00 34.10 3.51
672 938 0.886490 CGCAGAAGTTTCAGCCCAGT 60.886 55.000 4.04 0.00 36.48 4.00
673 939 0.886490 ACGCAGAAGTTTCAGCCCAG 60.886 55.000 4.04 0.00 36.48 4.45
674 940 1.148273 ACGCAGAAGTTTCAGCCCA 59.852 52.632 4.04 0.00 36.48 5.36
675 941 1.576421 CACGCAGAAGTTTCAGCCC 59.424 57.895 4.04 0.00 36.48 5.19
676 942 0.884704 TCCACGCAGAAGTTTCAGCC 60.885 55.000 4.04 0.00 36.48 4.85
677 943 0.944386 TTCCACGCAGAAGTTTCAGC 59.056 50.000 0.00 0.00 36.49 4.26
678 944 2.483876 TCTTCCACGCAGAAGTTTCAG 58.516 47.619 13.08 0.00 43.17 3.02
679 945 2.613026 TCTTCCACGCAGAAGTTTCA 57.387 45.000 13.08 0.00 43.17 2.69
680 946 2.092838 CGATCTTCCACGCAGAAGTTTC 59.907 50.000 13.08 10.74 43.17 2.78
681 947 2.069273 CGATCTTCCACGCAGAAGTTT 58.931 47.619 13.08 4.60 43.17 2.66
682 948 1.000955 ACGATCTTCCACGCAGAAGTT 59.999 47.619 13.08 6.61 43.17 2.66
683 949 0.603569 ACGATCTTCCACGCAGAAGT 59.396 50.000 13.08 3.38 43.17 3.01
684 950 0.994995 CACGATCTTCCACGCAGAAG 59.005 55.000 8.38 8.38 43.88 2.85
685 951 0.389817 CCACGATCTTCCACGCAGAA 60.390 55.000 0.00 0.00 0.00 3.02
686 952 1.215382 CCACGATCTTCCACGCAGA 59.785 57.895 0.00 0.00 0.00 4.26
687 953 2.456119 GCCACGATCTTCCACGCAG 61.456 63.158 0.00 0.00 0.00 5.18
688 954 2.434185 GCCACGATCTTCCACGCA 60.434 61.111 0.00 0.00 0.00 5.24
689 955 2.125512 AGCCACGATCTTCCACGC 60.126 61.111 0.00 0.00 0.00 5.34
690 956 1.078759 GACAGCCACGATCTTCCACG 61.079 60.000 0.00 0.00 0.00 4.94
691 957 0.037326 TGACAGCCACGATCTTCCAC 60.037 55.000 0.00 0.00 0.00 4.02
692 958 0.904649 ATGACAGCCACGATCTTCCA 59.095 50.000 0.00 0.00 0.00 3.53
693 959 1.667724 CAATGACAGCCACGATCTTCC 59.332 52.381 0.00 0.00 0.00 3.46
694 960 1.667724 CCAATGACAGCCACGATCTTC 59.332 52.381 0.00 0.00 0.00 2.87
695 961 1.742761 CCAATGACAGCCACGATCTT 58.257 50.000 0.00 0.00 0.00 2.40
696 962 0.745845 GCCAATGACAGCCACGATCT 60.746 55.000 0.00 0.00 0.00 2.75
697 963 1.723870 GCCAATGACAGCCACGATC 59.276 57.895 0.00 0.00 0.00 3.69
698 964 2.108514 CGCCAATGACAGCCACGAT 61.109 57.895 0.00 0.00 0.00 3.73
699 965 2.741985 CGCCAATGACAGCCACGA 60.742 61.111 0.00 0.00 0.00 4.35
700 966 4.465512 GCGCCAATGACAGCCACG 62.466 66.667 0.00 0.00 0.00 4.94
704 970 3.869272 CTCGGCGCCAATGACAGC 61.869 66.667 28.98 0.00 0.00 4.40
705 971 1.699656 CTTCTCGGCGCCAATGACAG 61.700 60.000 28.98 15.12 0.00 3.51
706 972 1.741401 CTTCTCGGCGCCAATGACA 60.741 57.895 28.98 0.00 0.00 3.58
707 973 3.093278 CTTCTCGGCGCCAATGAC 58.907 61.111 28.98 0.00 0.00 3.06
708 974 2.819595 GCTTCTCGGCGCCAATGA 60.820 61.111 28.98 17.77 0.00 2.57
709 975 2.821366 AGCTTCTCGGCGCCAATG 60.821 61.111 28.98 15.55 37.29 2.82
710 976 2.821366 CAGCTTCTCGGCGCCAAT 60.821 61.111 28.98 0.00 37.29 3.16
711 977 3.825160 AACAGCTTCTCGGCGCCAA 62.825 57.895 28.98 7.25 37.29 4.52
712 978 4.314440 AACAGCTTCTCGGCGCCA 62.314 61.111 28.98 12.94 37.29 5.69
713 979 3.793144 CAACAGCTTCTCGGCGCC 61.793 66.667 19.07 19.07 37.29 6.53
714 980 4.451652 GCAACAGCTTCTCGGCGC 62.452 66.667 0.00 0.00 37.29 6.53
715 981 2.320587 AAGCAACAGCTTCTCGGCG 61.321 57.895 0.00 0.00 45.01 6.46
716 982 3.660621 AAGCAACAGCTTCTCGGC 58.339 55.556 0.00 0.00 45.01 5.54
734 1000 9.350951 GGCTAGCCCTATTAATTCTTCTAAAAA 57.649 33.333 24.19 0.00 0.00 1.94
735 1001 8.919777 GGCTAGCCCTATTAATTCTTCTAAAA 57.080 34.615 24.19 0.00 0.00 1.52
753 1019 2.298610 AGAAAATTAAGCGGGCTAGCC 58.701 47.619 26.55 26.55 38.01 3.93
754 1020 3.628032 AGAAGAAAATTAAGCGGGCTAGC 59.372 43.478 6.04 6.04 37.41 3.42
755 1021 5.123979 ACAAGAAGAAAATTAAGCGGGCTAG 59.876 40.000 0.00 0.00 0.00 3.42
756 1022 5.007682 ACAAGAAGAAAATTAAGCGGGCTA 58.992 37.500 0.00 0.00 0.00 3.93
757 1023 3.826729 ACAAGAAGAAAATTAAGCGGGCT 59.173 39.130 0.00 0.00 0.00 5.19
758 1024 4.166523 GACAAGAAGAAAATTAAGCGGGC 58.833 43.478 0.00 0.00 0.00 6.13
759 1025 4.217550 TGGACAAGAAGAAAATTAAGCGGG 59.782 41.667 0.00 0.00 0.00 6.13
760 1026 5.371115 TGGACAAGAAGAAAATTAAGCGG 57.629 39.130 0.00 0.00 0.00 5.52
761 1027 6.308766 CCATTGGACAAGAAGAAAATTAAGCG 59.691 38.462 0.00 0.00 0.00 4.68
762 1028 6.591448 CCCATTGGACAAGAAGAAAATTAAGC 59.409 38.462 3.62 0.00 0.00 3.09
763 1029 7.895759 TCCCATTGGACAAGAAGAAAATTAAG 58.104 34.615 3.62 0.00 35.03 1.85
764 1030 7.525360 GCTCCCATTGGACAAGAAGAAAATTAA 60.525 37.037 3.62 0.00 35.03 1.40
765 1031 6.071391 GCTCCCATTGGACAAGAAGAAAATTA 60.071 38.462 3.62 0.00 35.03 1.40
766 1032 5.279657 GCTCCCATTGGACAAGAAGAAAATT 60.280 40.000 3.62 0.00 35.03 1.82
767 1033 4.221482 GCTCCCATTGGACAAGAAGAAAAT 59.779 41.667 3.62 0.00 35.03 1.82
768 1034 3.573967 GCTCCCATTGGACAAGAAGAAAA 59.426 43.478 3.62 0.00 35.03 2.29
769 1035 3.157087 GCTCCCATTGGACAAGAAGAAA 58.843 45.455 3.62 0.00 35.03 2.52
770 1036 2.108075 TGCTCCCATTGGACAAGAAGAA 59.892 45.455 3.62 0.00 35.03 2.52
771 1037 1.704628 TGCTCCCATTGGACAAGAAGA 59.295 47.619 3.62 0.00 35.03 2.87
772 1038 1.815003 GTGCTCCCATTGGACAAGAAG 59.185 52.381 3.62 0.00 35.03 2.85
773 1039 1.144708 TGTGCTCCCATTGGACAAGAA 59.855 47.619 3.62 0.00 35.03 2.52
774 1040 0.770499 TGTGCTCCCATTGGACAAGA 59.230 50.000 3.62 0.00 35.03 3.02
775 1041 1.843368 ATGTGCTCCCATTGGACAAG 58.157 50.000 3.62 0.00 39.08 3.16
776 1042 2.307496 AATGTGCTCCCATTGGACAA 57.693 45.000 3.62 0.00 39.08 3.18
777 1043 3.448093 TTAATGTGCTCCCATTGGACA 57.552 42.857 3.62 0.41 39.87 4.02
778 1044 4.021544 TGTTTTAATGTGCTCCCATTGGAC 60.022 41.667 3.62 0.00 35.85 4.02
779 1045 4.155709 TGTTTTAATGTGCTCCCATTGGA 58.844 39.130 3.62 0.00 35.85 3.53
780 1046 4.533919 TGTTTTAATGTGCTCCCATTGG 57.466 40.909 0.00 0.00 35.85 3.16
781 1047 5.352016 CCAATGTTTTAATGTGCTCCCATTG 59.648 40.000 0.00 0.00 38.27 2.82
782 1048 5.490159 CCAATGTTTTAATGTGCTCCCATT 58.510 37.500 0.00 0.00 38.54 3.16
783 1049 4.080975 CCCAATGTTTTAATGTGCTCCCAT 60.081 41.667 0.00 0.00 0.00 4.00
784 1050 3.260380 CCCAATGTTTTAATGTGCTCCCA 59.740 43.478 0.00 0.00 0.00 4.37
785 1051 3.513515 TCCCAATGTTTTAATGTGCTCCC 59.486 43.478 0.00 0.00 0.00 4.30
786 1052 4.799564 TCCCAATGTTTTAATGTGCTCC 57.200 40.909 0.00 0.00 0.00 4.70
787 1053 5.111293 CCATCCCAATGTTTTAATGTGCTC 58.889 41.667 0.00 0.00 0.00 4.26
788 1054 4.080975 CCCATCCCAATGTTTTAATGTGCT 60.081 41.667 0.00 0.00 0.00 4.40
789 1055 4.081198 TCCCATCCCAATGTTTTAATGTGC 60.081 41.667 0.00 0.00 0.00 4.57
790 1056 5.674052 TCCCATCCCAATGTTTTAATGTG 57.326 39.130 0.00 0.00 0.00 3.21
791 1057 5.130809 CCATCCCATCCCAATGTTTTAATGT 59.869 40.000 0.00 0.00 0.00 2.71
792 1058 5.613329 CCATCCCATCCCAATGTTTTAATG 58.387 41.667 0.00 0.00 0.00 1.90
793 1059 4.102996 GCCATCCCATCCCAATGTTTTAAT 59.897 41.667 0.00 0.00 0.00 1.40
794 1060 3.454082 GCCATCCCATCCCAATGTTTTAA 59.546 43.478 0.00 0.00 0.00 1.52
795 1061 3.037549 GCCATCCCATCCCAATGTTTTA 58.962 45.455 0.00 0.00 0.00 1.52
796 1062 1.839354 GCCATCCCATCCCAATGTTTT 59.161 47.619 0.00 0.00 0.00 2.43
797 1063 1.008693 AGCCATCCCATCCCAATGTTT 59.991 47.619 0.00 0.00 0.00 2.83
798 1064 0.638292 AGCCATCCCATCCCAATGTT 59.362 50.000 0.00 0.00 0.00 2.71
799 1065 1.533187 TAGCCATCCCATCCCAATGT 58.467 50.000 0.00 0.00 0.00 2.71
800 1066 2.681319 TTAGCCATCCCATCCCAATG 57.319 50.000 0.00 0.00 0.00 2.82
801 1067 2.043526 GGATTAGCCATCCCATCCCAAT 59.956 50.000 1.54 0.00 45.71 3.16
802 1068 1.428912 GGATTAGCCATCCCATCCCAA 59.571 52.381 1.54 0.00 45.71 4.12
803 1069 1.075601 GGATTAGCCATCCCATCCCA 58.924 55.000 1.54 0.00 45.71 4.37
804 1070 3.987594 GGATTAGCCATCCCATCCC 57.012 57.895 1.54 0.00 45.71 3.85
811 1077 0.988063 GAGGGGGAGGATTAGCCATC 59.012 60.000 0.00 0.00 40.02 3.51
812 1078 0.476611 GGAGGGGGAGGATTAGCCAT 60.477 60.000 0.00 0.00 40.02 4.40
813 1079 1.073706 GGAGGGGGAGGATTAGCCA 60.074 63.158 0.00 0.00 40.02 4.75
814 1080 1.848431 GGGAGGGGGAGGATTAGCC 60.848 68.421 0.00 0.00 0.00 3.93
815 1081 1.073706 TGGGAGGGGGAGGATTAGC 60.074 63.158 0.00 0.00 0.00 3.09
816 1082 0.768609 GGTGGGAGGGGGAGGATTAG 60.769 65.000 0.00 0.00 0.00 1.73
817 1083 1.243230 AGGTGGGAGGGGGAGGATTA 61.243 60.000 0.00 0.00 0.00 1.75
818 1084 2.044620 GGTGGGAGGGGGAGGATT 59.955 66.667 0.00 0.00 0.00 3.01
819 1085 2.967014 AGGTGGGAGGGGGAGGAT 60.967 66.667 0.00 0.00 0.00 3.24
820 1086 4.024984 CAGGTGGGAGGGGGAGGA 62.025 72.222 0.00 0.00 0.00 3.71
827 1093 4.767255 GTCGCTGCAGGTGGGAGG 62.767 72.222 17.12 0.00 35.12 4.30
828 1094 4.767255 GGTCGCTGCAGGTGGGAG 62.767 72.222 17.12 0.00 38.13 4.30
831 1097 2.954684 TAAGGGTCGCTGCAGGTGG 61.955 63.158 17.12 0.00 0.00 4.61
832 1098 1.741770 GTAAGGGTCGCTGCAGGTG 60.742 63.158 17.12 3.03 0.00 4.00
833 1099 2.663196 GTAAGGGTCGCTGCAGGT 59.337 61.111 17.12 0.00 0.00 4.00
834 1100 1.327690 TAGGTAAGGGTCGCTGCAGG 61.328 60.000 17.12 5.82 0.00 4.85
835 1101 0.535335 TTAGGTAAGGGTCGCTGCAG 59.465 55.000 10.11 10.11 0.00 4.41
836 1102 0.978151 TTTAGGTAAGGGTCGCTGCA 59.022 50.000 0.00 0.00 0.00 4.41
837 1103 2.327200 ATTTAGGTAAGGGTCGCTGC 57.673 50.000 0.00 0.00 0.00 5.25
838 1104 5.638596 AAAAATTTAGGTAAGGGTCGCTG 57.361 39.130 0.00 0.00 0.00 5.18
869 1135 1.115326 GGGTCAGGCTGCAGGTTTTT 61.115 55.000 17.12 0.00 0.00 1.94
870 1136 1.531602 GGGTCAGGCTGCAGGTTTT 60.532 57.895 17.12 0.00 0.00 2.43
871 1137 2.116125 GGGTCAGGCTGCAGGTTT 59.884 61.111 17.12 0.00 0.00 3.27
872 1138 3.177884 TGGGTCAGGCTGCAGGTT 61.178 61.111 17.12 0.00 0.00 3.50
873 1139 3.644606 CTGGGTCAGGCTGCAGGT 61.645 66.667 17.12 0.00 0.00 4.00
874 1140 3.618780 GACTGGGTCAGGCTGCAGG 62.619 68.421 17.12 0.00 36.41 4.85
875 1141 2.046507 GACTGGGTCAGGCTGCAG 60.047 66.667 10.11 10.11 36.41 4.41
876 1142 3.640407 GGACTGGGTCAGGCTGCA 61.640 66.667 10.34 0.94 39.87 4.41
877 1143 4.416738 GGGACTGGGTCAGGCTGC 62.417 72.222 10.34 4.94 39.87 5.25
878 1144 3.721706 GGGGACTGGGTCAGGCTG 61.722 72.222 8.58 8.58 39.87 4.85
879 1145 4.270153 TGGGGACTGGGTCAGGCT 62.270 66.667 0.50 0.00 39.87 4.58
880 1146 4.035102 GTGGGGACTGGGTCAGGC 62.035 72.222 0.00 0.00 39.10 4.85
881 1147 2.203998 AGTGGGGACTGGGTCAGG 60.204 66.667 0.00 0.00 35.51 3.86
882 1148 2.294078 GGAGTGGGGACTGGGTCAG 61.294 68.421 0.14 0.00 37.52 3.51
883 1149 2.203938 GGAGTGGGGACTGGGTCA 60.204 66.667 0.14 0.00 33.68 4.02
884 1150 3.391382 CGGAGTGGGGACTGGGTC 61.391 72.222 0.00 0.00 0.00 4.46
906 1172 1.050988 GGAGTGCCTATGGAGCTGGA 61.051 60.000 0.00 0.00 0.00 3.86
1001 1311 4.881440 GCTCATCCATGCCGGCCA 62.881 66.667 26.77 12.96 33.14 5.36
1228 1606 0.308376 GGAGACAGATCCGCGTACTC 59.692 60.000 4.92 0.00 0.00 2.59
1347 1731 0.672889 TGCGGATGCTTGCAAGAAAA 59.327 45.000 30.39 14.46 43.34 2.29
1378 1768 3.270027 CCATGTAGCGAGATGTTCCAAA 58.730 45.455 3.35 0.00 0.00 3.28
1379 1769 2.236146 ACCATGTAGCGAGATGTTCCAA 59.764 45.455 3.35 0.00 0.00 3.53
1415 1805 0.725686 CAGCACAGCATACTCACTGC 59.274 55.000 0.00 0.00 37.42 4.40
1548 1951 0.675208 TGAAATGTATGCCGCCGTGT 60.675 50.000 0.00 0.00 0.00 4.49
1552 1955 1.032014 ACCATGAAATGTATGCCGCC 58.968 50.000 0.00 0.00 44.81 6.13
1554 1957 3.128415 TCACAACCATGAAATGTATGCCG 59.872 43.478 0.00 0.00 44.81 5.69
1602 2008 4.418328 GCCACCCATGCACCGGTA 62.418 66.667 6.87 0.00 0.00 4.02
1773 6164 3.778075 TCCCAATGAAATCCGAGGAACTA 59.222 43.478 0.00 0.00 41.55 2.24
1784 6175 3.094572 CCAGCAGACTTCCCAATGAAAT 58.905 45.455 0.00 0.00 31.06 2.17
1815 6206 3.442977 AGCGGTATCGGGAGTTGATATAC 59.557 47.826 0.00 0.00 36.79 1.47
1834 6237 1.135257 AGTCAAAGATCGGTCTGAGCG 60.135 52.381 22.05 22.05 38.28 5.03
1857 6260 4.927425 TCATCACTAAGAGCGTAAACCAAC 59.073 41.667 0.00 0.00 0.00 3.77
1877 6280 7.577303 ACACACATCCCAGTTATAAATCTCAT 58.423 34.615 0.00 0.00 0.00 2.90
1913 6325 1.798283 TTTCCAGTGCATGCATTTGC 58.202 45.000 25.64 11.03 43.07 3.68
1968 6383 8.208224 TGTACTCCAATGACTTTGAGAAACTTA 58.792 33.333 2.74 0.00 37.53 2.24
2036 6472 3.006940 TCCAAATCGTATGCCAACAGTC 58.993 45.455 0.00 0.00 0.00 3.51
2102 6542 6.563222 ATGGGAAAAATTGCACAAATTCAG 57.437 33.333 0.00 0.00 37.51 3.02
2136 6579 1.922447 TCCAATGGTAGGCAGGACAAT 59.078 47.619 0.00 0.00 0.00 2.71
2261 6747 8.784043 ACTAAAGGTAGCATTTTCTACAAACAG 58.216 33.333 0.00 0.00 40.42 3.16
2355 6845 7.093289 ACAGAGCATACTACAACTTGGACTAAT 60.093 37.037 0.00 0.00 0.00 1.73
2414 6909 0.322187 AGGTACACACGGAAATGGGC 60.322 55.000 0.00 0.00 0.00 5.36
2415 6910 1.271163 ACAGGTACACACGGAAATGGG 60.271 52.381 0.00 0.00 0.00 4.00
2416 6911 2.178912 ACAGGTACACACGGAAATGG 57.821 50.000 0.00 0.00 0.00 3.16
2563 7163 6.694877 ACACACTAAAGCGTCTCATATAGA 57.305 37.500 0.00 0.00 0.00 1.98
2602 7217 7.119846 GCTTAGACAGTCAGGTAAAACATCAAT 59.880 37.037 2.66 0.00 0.00 2.57
2854 8164 8.792830 AAGCAGCTGTACTTTCAATTTAGATA 57.207 30.769 16.64 0.00 0.00 1.98
2918 8228 7.040686 ACCAACACTGTTGTTAAATAGATGGTC 60.041 37.037 18.53 0.00 44.57 4.02
2999 8374 2.237392 ACAAGGAAGACATGGGCTAGAC 59.763 50.000 0.00 0.00 0.00 2.59
3001 8376 3.452627 AGTACAAGGAAGACATGGGCTAG 59.547 47.826 0.00 0.00 0.00 3.42
3003 8378 2.237392 GAGTACAAGGAAGACATGGGCT 59.763 50.000 0.00 0.00 0.00 5.19
3005 8380 3.261897 AGTGAGTACAAGGAAGACATGGG 59.738 47.826 0.00 0.00 0.00 4.00
3013 8388 4.408276 ACTAGAGCAGTGAGTACAAGGAA 58.592 43.478 0.00 0.00 35.62 3.36
3015 8390 4.792521 AACTAGAGCAGTGAGTACAAGG 57.207 45.455 0.00 0.00 37.63 3.61
3016 8391 6.926272 AGAAAAACTAGAGCAGTGAGTACAAG 59.074 38.462 0.00 0.00 37.63 3.16
3031 8406 5.888161 AGGATGCCACCAATAGAAAAACTAG 59.112 40.000 0.00 0.00 34.35 2.57
3045 8444 3.005155 GCAAGAAATATCAGGATGCCACC 59.995 47.826 0.00 0.00 34.76 4.61
3137 10511 2.916640 CAATCTCTCCAGGAAAGAGGC 58.083 52.381 0.00 0.00 40.58 4.70



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.