Multiple sequence alignment - TraesCS7B01G390400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7B01G390400
chr7B
100.000
3188
0
0
1
3188
656530595
656527408
0.000000e+00
5888.0
1
TraesCS7B01G390400
chr7B
83.002
1659
213
30
933
2538
657663356
657661714
0.000000e+00
1437.0
2
TraesCS7B01G390400
chr7B
82.092
1625
199
42
977
2521
657313541
657315153
0.000000e+00
1304.0
3
TraesCS7B01G390400
chr7B
80.920
1630
213
53
901
2466
657084529
657086124
0.000000e+00
1197.0
4
TraesCS7B01G390400
chr7B
77.388
1937
275
87
923
2764
656928715
656930583
0.000000e+00
1000.0
5
TraesCS7B01G390400
chr7B
87.731
595
55
7
91
670
534011160
534010569
0.000000e+00
678.0
6
TraesCS7B01G390400
chr7B
92.000
275
22
0
987
1261
657317995
657318269
1.390000e-103
387.0
7
TraesCS7B01G390400
chr7B
86.973
261
27
3
2212
2465
657077191
657077451
1.450000e-73
287.0
8
TraesCS7B01G390400
chr7B
77.419
310
25
20
2494
2767
656550798
656550498
3.310000e-30
143.0
9
TraesCS7B01G390400
chr7B
85.612
139
14
3
538
670
534010453
534010315
1.190000e-29
141.0
10
TraesCS7B01G390400
chr7B
100.000
44
0
0
1
44
666612676
666612719
7.330000e-12
82.4
11
TraesCS7B01G390400
chr7B
100.000
32
0
0
2470
2501
656547106
656547075
3.430000e-05
60.2
12
TraesCS7B01G390400
chr7A
82.995
1870
215
44
1011
2823
677825336
677827159
0.000000e+00
1596.0
13
TraesCS7B01G390400
chr7A
83.668
1592
192
35
1004
2537
678146209
678144628
0.000000e+00
1437.0
14
TraesCS7B01G390400
chr7A
82.907
1252
173
23
975
2192
677833014
677834258
0.000000e+00
1088.0
15
TraesCS7B01G390400
chr7A
76.900
1987
284
88
893
2767
677723851
677721928
0.000000e+00
965.0
16
TraesCS7B01G390400
chr7A
76.948
1874
267
77
886
2648
677821249
677823068
0.000000e+00
915.0
17
TraesCS7B01G390400
chr7A
78.340
1265
198
34
975
2192
677838965
677840200
0.000000e+00
749.0
18
TraesCS7B01G390400
chr7A
86.420
567
45
13
2645
3188
677721589
677721032
2.740000e-165
592.0
19
TraesCS7B01G390400
chr7A
75.744
1142
178
43
1011
2102
677995478
677994386
1.720000e-132
483.0
20
TraesCS7B01G390400
chr7A
84.416
231
24
4
2927
3157
677827247
677827465
1.930000e-52
217.0
21
TraesCS7B01G390400
chr7A
81.250
176
15
9
3001
3168
677823699
677823864
3.340000e-25
126.0
22
TraesCS7B01G390400
chr7A
97.727
44
1
0
1
44
287237398
287237441
3.410000e-10
76.8
23
TraesCS7B01G390400
chr7D
80.367
1905
251
68
972
2786
586708146
586710017
0.000000e+00
1332.0
24
TraesCS7B01G390400
chr7D
81.893
1690
188
45
1011
2648
586501881
586500258
0.000000e+00
1317.0
25
TraesCS7B01G390400
chr7D
81.579
1520
204
35
1011
2466
586700213
586701720
0.000000e+00
1186.0
26
TraesCS7B01G390400
chr7D
78.504
1270
193
49
972
2192
586754311
586755549
0.000000e+00
760.0
27
TraesCS7B01G390400
chr7D
77.559
1270
184
50
1273
2459
586688967
586690218
0.000000e+00
673.0
28
TraesCS7B01G390400
chr7D
88.395
517
29
13
2693
3188
586500030
586499524
7.610000e-166
593.0
29
TraesCS7B01G390400
chr7D
87.500
456
49
8
91
542
638362811
638363262
1.310000e-143
520.0
30
TraesCS7B01G390400
chr7D
82.428
552
76
8
975
1526
586745744
586746274
2.240000e-126
462.0
31
TraesCS7B01G390400
chr4B
87.731
595
55
7
91
670
628559060
628558469
0.000000e+00
678.0
32
TraesCS7B01G390400
chr4B
84.173
139
16
1
538
670
628558352
628558214
2.580000e-26
130.0
33
TraesCS7B01G390400
chr4B
100.000
44
0
0
1
44
51034597
51034554
7.330000e-12
82.4
34
TraesCS7B01G390400
chr3B
88.840
457
41
9
91
542
762098222
762098673
1.290000e-153
553.0
35
TraesCS7B01G390400
chr1D
87.885
454
50
5
91
542
386750709
386751159
2.180000e-146
529.0
36
TraesCS7B01G390400
chr3D
87.004
454
50
6
91
542
484303543
484303097
1.320000e-138
503.0
37
TraesCS7B01G390400
chr6D
82.609
598
70
12
91
668
157979076
157978493
6.140000e-137
497.0
38
TraesCS7B01G390400
chr6B
82.689
543
63
9
91
617
285226634
285226107
1.350000e-123
453.0
39
TraesCS7B01G390400
chr2B
84.735
452
43
5
91
542
11415996
11415571
2.270000e-116
429.0
40
TraesCS7B01G390400
chr2B
76.946
334
60
10
91
411
754611368
754611039
1.180000e-39
174.0
41
TraesCS7B01G390400
chr1B
86.760
287
37
1
91
377
624092420
624092135
5.130000e-83
318.0
42
TraesCS7B01G390400
chr3A
78.261
322
56
12
91
405
416138378
416138064
9.020000e-46
195.0
43
TraesCS7B01G390400
chr4A
100.000
44
0
0
1
44
590351496
590351453
7.330000e-12
82.4
44
TraesCS7B01G390400
chr2A
100.000
44
0
0
1
44
114336905
114336862
7.330000e-12
82.4
45
TraesCS7B01G390400
chr1A
94.000
50
3
0
748
797
568520965
568520916
3.410000e-10
76.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7B01G390400
chr7B
656527408
656530595
3187
True
5888.0
5888
100.00000
1
3188
1
chr7B.!!$R1
3187
1
TraesCS7B01G390400
chr7B
657661714
657663356
1642
True
1437.0
1437
83.00200
933
2538
1
chr7B.!!$R2
1605
2
TraesCS7B01G390400
chr7B
657084529
657086124
1595
False
1197.0
1197
80.92000
901
2466
1
chr7B.!!$F3
1565
3
TraesCS7B01G390400
chr7B
656928715
656930583
1868
False
1000.0
1000
77.38800
923
2764
1
chr7B.!!$F1
1841
4
TraesCS7B01G390400
chr7B
657313541
657318269
4728
False
845.5
1304
87.04600
977
2521
2
chr7B.!!$F5
1544
5
TraesCS7B01G390400
chr7B
534010315
534011160
845
True
409.5
678
86.67150
91
670
2
chr7B.!!$R3
579
6
TraesCS7B01G390400
chr7A
678144628
678146209
1581
True
1437.0
1437
83.66800
1004
2537
1
chr7A.!!$R2
1533
7
TraesCS7B01G390400
chr7A
677833014
677834258
1244
False
1088.0
1088
82.90700
975
2192
1
chr7A.!!$F2
1217
8
TraesCS7B01G390400
chr7A
677721032
677723851
2819
True
778.5
965
81.66000
893
3188
2
chr7A.!!$R3
2295
9
TraesCS7B01G390400
chr7A
677838965
677840200
1235
False
749.0
749
78.34000
975
2192
1
chr7A.!!$F3
1217
10
TraesCS7B01G390400
chr7A
677821249
677827465
6216
False
713.5
1596
81.40225
886
3168
4
chr7A.!!$F4
2282
11
TraesCS7B01G390400
chr7A
677994386
677995478
1092
True
483.0
483
75.74400
1011
2102
1
chr7A.!!$R1
1091
12
TraesCS7B01G390400
chr7D
586708146
586710017
1871
False
1332.0
1332
80.36700
972
2786
1
chr7D.!!$F3
1814
13
TraesCS7B01G390400
chr7D
586700213
586701720
1507
False
1186.0
1186
81.57900
1011
2466
1
chr7D.!!$F2
1455
14
TraesCS7B01G390400
chr7D
586499524
586501881
2357
True
955.0
1317
85.14400
1011
3188
2
chr7D.!!$R1
2177
15
TraesCS7B01G390400
chr7D
586754311
586755549
1238
False
760.0
760
78.50400
972
2192
1
chr7D.!!$F5
1220
16
TraesCS7B01G390400
chr7D
586688967
586690218
1251
False
673.0
673
77.55900
1273
2459
1
chr7D.!!$F1
1186
17
TraesCS7B01G390400
chr7D
586745744
586746274
530
False
462.0
462
82.42800
975
1526
1
chr7D.!!$F4
551
18
TraesCS7B01G390400
chr4B
628558214
628559060
846
True
404.0
678
85.95200
91
670
2
chr4B.!!$R2
579
19
TraesCS7B01G390400
chr6D
157978493
157979076
583
True
497.0
497
82.60900
91
668
1
chr6D.!!$R1
577
20
TraesCS7B01G390400
chr6B
285226107
285226634
527
True
453.0
453
82.68900
91
617
1
chr6B.!!$R1
526
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
685
951
0.036022
GCTGAGACTGGGCTGAAACT
59.964
55.0
0.0
0.0
0.0
2.66
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2414
6909
0.322187
AGGTACACACGGAAATGGGC
60.322
55.0
0.0
0.0
0.0
5.36
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
21
22
4.837896
GAAGTCCAATATTTAGCTGGGC
57.162
45.455
0.00
0.00
34.93
5.36
23
24
3.825328
AGTCCAATATTTAGCTGGGCTG
58.175
45.455
0.00
0.00
43.54
4.85
24
25
2.887152
GTCCAATATTTAGCTGGGCTGG
59.113
50.000
0.00
0.00
40.10
4.85
25
26
2.158475
TCCAATATTTAGCTGGGCTGGG
60.158
50.000
0.00
0.00
40.10
4.45
26
27
1.615392
CAATATTTAGCTGGGCTGGGC
59.385
52.381
0.00
0.00
40.10
5.36
36
37
3.416351
GGCTGGGCCCTTAAGAGT
58.584
61.111
25.70
0.00
44.06
3.24
37
38
2.616489
GGCTGGGCCCTTAAGAGTA
58.384
57.895
25.70
0.00
44.06
2.59
38
39
0.470341
GGCTGGGCCCTTAAGAGTAG
59.530
60.000
25.70
10.50
44.06
2.57
39
40
1.205055
GCTGGGCCCTTAAGAGTAGT
58.795
55.000
25.70
0.00
0.00
2.73
40
41
2.395619
GCTGGGCCCTTAAGAGTAGTA
58.604
52.381
25.70
0.00
0.00
1.82
41
42
2.365941
GCTGGGCCCTTAAGAGTAGTAG
59.634
54.545
25.70
8.26
0.00
2.57
42
43
3.644335
CTGGGCCCTTAAGAGTAGTAGT
58.356
50.000
25.70
0.00
0.00
2.73
43
44
4.801164
CTGGGCCCTTAAGAGTAGTAGTA
58.199
47.826
25.70
0.00
0.00
1.82
44
45
4.801164
TGGGCCCTTAAGAGTAGTAGTAG
58.199
47.826
25.70
0.00
0.00
2.57
45
46
4.231426
TGGGCCCTTAAGAGTAGTAGTAGT
59.769
45.833
25.70
0.00
0.00
2.73
46
47
5.433051
TGGGCCCTTAAGAGTAGTAGTAGTA
59.567
44.000
25.70
0.00
0.00
1.82
47
48
6.003326
GGGCCCTTAAGAGTAGTAGTAGTAG
58.997
48.000
17.04
0.00
0.00
2.57
48
49
6.410272
GGGCCCTTAAGAGTAGTAGTAGTAGT
60.410
46.154
17.04
0.00
0.00
2.73
49
50
7.202139
GGGCCCTTAAGAGTAGTAGTAGTAGTA
60.202
44.444
17.04
0.00
0.00
1.82
50
51
7.877612
GGCCCTTAAGAGTAGTAGTAGTAGTAG
59.122
44.444
3.36
0.00
0.00
2.57
51
52
8.646900
GCCCTTAAGAGTAGTAGTAGTAGTAGA
58.353
40.741
3.36
0.00
0.00
2.59
56
57
8.816640
AAGAGTAGTAGTAGTAGTAGATTCGC
57.183
38.462
0.00
0.00
0.00
4.70
57
58
7.378181
AGAGTAGTAGTAGTAGTAGATTCGCC
58.622
42.308
0.00
0.00
0.00
5.54
58
59
6.155827
AGTAGTAGTAGTAGTAGATTCGCCG
58.844
44.000
0.00
0.00
0.00
6.46
59
60
4.954875
AGTAGTAGTAGTAGATTCGCCGT
58.045
43.478
0.00
0.00
0.00
5.68
60
61
5.363939
AGTAGTAGTAGTAGATTCGCCGTT
58.636
41.667
0.00
0.00
0.00
4.44
61
62
4.548991
AGTAGTAGTAGATTCGCCGTTG
57.451
45.455
0.00
0.00
0.00
4.10
62
63
3.944015
AGTAGTAGTAGATTCGCCGTTGT
59.056
43.478
0.00
0.00
0.00
3.32
63
64
3.417690
AGTAGTAGATTCGCCGTTGTC
57.582
47.619
0.00
0.00
0.00
3.18
64
65
3.015327
AGTAGTAGATTCGCCGTTGTCT
58.985
45.455
0.00
0.00
0.00
3.41
65
66
2.279582
AGTAGATTCGCCGTTGTCTG
57.720
50.000
0.00
0.00
0.00
3.51
66
67
1.544691
AGTAGATTCGCCGTTGTCTGT
59.455
47.619
0.00
0.00
0.00
3.41
67
68
2.751259
AGTAGATTCGCCGTTGTCTGTA
59.249
45.455
0.00
0.00
0.00
2.74
68
69
1.992170
AGATTCGCCGTTGTCTGTAC
58.008
50.000
0.00
0.00
0.00
2.90
69
70
0.997196
GATTCGCCGTTGTCTGTACC
59.003
55.000
0.00
0.00
0.00
3.34
70
71
0.319083
ATTCGCCGTTGTCTGTACCA
59.681
50.000
0.00
0.00
0.00
3.25
71
72
0.319211
TTCGCCGTTGTCTGTACCAG
60.319
55.000
0.00
0.00
0.00
4.00
72
73
1.006571
CGCCGTTGTCTGTACCAGT
60.007
57.895
0.00
0.00
32.61
4.00
73
74
0.241749
CGCCGTTGTCTGTACCAGTA
59.758
55.000
0.00
0.00
32.61
2.74
74
75
1.135199
CGCCGTTGTCTGTACCAGTAT
60.135
52.381
0.00
0.00
32.61
2.12
75
76
2.537401
GCCGTTGTCTGTACCAGTATC
58.463
52.381
0.00
0.00
32.61
2.24
76
77
2.094390
GCCGTTGTCTGTACCAGTATCA
60.094
50.000
0.00
0.00
32.61
2.15
77
78
3.615592
GCCGTTGTCTGTACCAGTATCAA
60.616
47.826
0.00
0.00
32.61
2.57
78
79
4.562082
CCGTTGTCTGTACCAGTATCAAA
58.438
43.478
0.00
0.00
32.61
2.69
79
80
4.387862
CCGTTGTCTGTACCAGTATCAAAC
59.612
45.833
0.00
0.00
32.61
2.93
80
81
4.986034
CGTTGTCTGTACCAGTATCAAACA
59.014
41.667
0.00
0.00
32.61
2.83
81
82
5.637810
CGTTGTCTGTACCAGTATCAAACAT
59.362
40.000
0.00
0.00
32.61
2.71
82
83
6.809689
CGTTGTCTGTACCAGTATCAAACATA
59.190
38.462
0.00
0.00
32.61
2.29
83
84
7.491372
CGTTGTCTGTACCAGTATCAAACATAT
59.509
37.037
0.00
0.00
32.61
1.78
84
85
9.811995
GTTGTCTGTACCAGTATCAAACATATA
57.188
33.333
0.00
0.00
32.61
0.86
180
181
5.281314
AGATAACTATCAAGTGGGTGGTCT
58.719
41.667
0.00
0.00
35.62
3.85
182
183
2.621070
ACTATCAAGTGGGTGGTCTGT
58.379
47.619
0.00
0.00
33.57
3.41
282
283
8.021396
AGCTCTAATTATTTGACCGTTTGTTTC
58.979
33.333
0.00
0.00
0.00
2.78
297
298
2.577700
TGTTTCACCGTTAACTGGCAT
58.422
42.857
14.00
0.00
0.00
4.40
330
331
8.739039
CCCATATGTCAGTGTATTTCTGAAAAA
58.261
33.333
6.95
0.00
42.42
1.94
342
343
6.661304
ATTTCTGAAAAACAATCAGCTCCT
57.339
33.333
6.95
0.00
43.19
3.69
346
348
5.593909
TCTGAAAAACAATCAGCTCCTTGAA
59.406
36.000
10.90
0.00
43.19
2.69
554
820
1.147600
GAGGTGACGTGTTGGGGTT
59.852
57.895
0.00
0.00
0.00
4.11
599
865
3.777925
CGTTGACGCCTTCGCCAG
61.778
66.667
0.00
0.00
39.84
4.85
600
866
4.090057
GTTGACGCCTTCGCCAGC
62.090
66.667
0.00
0.00
39.84
4.85
605
871
4.767255
CGCCTTCGCCAGCCTTCT
62.767
66.667
0.00
0.00
0.00
2.85
606
872
2.821810
GCCTTCGCCAGCCTTCTC
60.822
66.667
0.00
0.00
0.00
2.87
607
873
2.510238
CCTTCGCCAGCCTTCTCG
60.510
66.667
0.00
0.00
0.00
4.04
608
874
2.573869
CTTCGCCAGCCTTCTCGA
59.426
61.111
0.00
0.00
0.00
4.04
609
875
1.518133
CTTCGCCAGCCTTCTCGAG
60.518
63.158
5.93
5.93
32.31
4.04
610
876
3.649277
TTCGCCAGCCTTCTCGAGC
62.649
63.158
7.81
0.00
32.31
5.03
611
877
4.140599
CGCCAGCCTTCTCGAGCT
62.141
66.667
7.81
0.00
40.89
4.09
612
878
2.202864
GCCAGCCTTCTCGAGCTC
60.203
66.667
7.81
2.73
37.18
4.09
613
879
2.103934
CCAGCCTTCTCGAGCTCG
59.896
66.667
30.03
30.03
37.18
5.03
614
880
2.103934
CAGCCTTCTCGAGCTCGG
59.896
66.667
33.98
24.14
37.18
4.63
615
881
3.832492
AGCCTTCTCGAGCTCGGC
61.832
66.667
33.98
27.36
40.99
5.54
617
883
4.560856
CCTTCTCGAGCTCGGCGG
62.561
72.222
33.98
23.49
40.29
6.13
618
884
4.560856
CTTCTCGAGCTCGGCGGG
62.561
72.222
33.98
20.99
40.29
6.13
627
893
4.821589
CTCGGCGGGGCTGAAGAC
62.822
72.222
7.21
0.00
43.76
3.01
635
901
4.077188
GGCTGAAGACGCGTGCAC
62.077
66.667
20.70
6.82
0.00
4.57
636
902
4.077188
GCTGAAGACGCGTGCACC
62.077
66.667
20.70
0.63
0.00
5.01
637
903
3.414700
CTGAAGACGCGTGCACCC
61.415
66.667
20.70
0.13
0.00
4.61
638
904
3.865929
CTGAAGACGCGTGCACCCT
62.866
63.158
20.70
3.34
0.00
4.34
639
905
3.414700
GAAGACGCGTGCACCCTG
61.415
66.667
20.70
3.52
0.00
4.45
654
920
4.694233
CTGCGCCACTGCTGGAGT
62.694
66.667
4.18
0.00
40.55
3.85
660
926
3.337619
CACTGCTGGAGTGTGTGC
58.662
61.111
19.70
0.00
46.30
4.57
661
927
2.111878
ACTGCTGGAGTGTGTGCC
59.888
61.111
0.00
0.00
31.75
5.01
662
928
2.429058
CTGCTGGAGTGTGTGCCT
59.571
61.111
0.00
0.00
0.00
4.75
663
929
1.670406
CTGCTGGAGTGTGTGCCTC
60.670
63.158
0.00
0.00
0.00
4.70
664
930
2.109517
CTGCTGGAGTGTGTGCCTCT
62.110
60.000
0.00
0.00
0.00
3.69
665
931
1.375268
GCTGGAGTGTGTGCCTCTC
60.375
63.158
0.00
0.00
0.00
3.20
666
932
1.080230
CTGGAGTGTGTGCCTCTCG
60.080
63.158
0.00
0.00
0.00
4.04
667
933
2.433318
GGAGTGTGTGCCTCTCGC
60.433
66.667
0.00
0.00
38.31
5.03
668
934
2.653702
GAGTGTGTGCCTCTCGCT
59.346
61.111
0.00
0.00
38.78
4.93
669
935
1.735920
GAGTGTGTGCCTCTCGCTG
60.736
63.158
0.26
0.00
38.78
5.18
670
936
2.147315
GAGTGTGTGCCTCTCGCTGA
62.147
60.000
0.26
0.00
38.78
4.26
671
937
1.735920
GTGTGTGCCTCTCGCTGAG
60.736
63.158
0.00
0.00
42.30
3.35
672
938
1.903404
TGTGTGCCTCTCGCTGAGA
60.903
57.895
7.79
7.79
45.39
3.27
673
939
1.445238
GTGTGCCTCTCGCTGAGAC
60.445
63.158
6.80
0.00
45.39
3.36
674
940
1.604879
TGTGCCTCTCGCTGAGACT
60.605
57.895
6.80
0.00
45.39
3.24
675
941
1.153862
GTGCCTCTCGCTGAGACTG
60.154
63.158
6.80
1.65
45.39
3.51
676
942
2.346541
TGCCTCTCGCTGAGACTGG
61.347
63.158
6.80
6.77
45.39
4.00
677
943
3.074999
GCCTCTCGCTGAGACTGGG
62.075
68.421
12.42
10.03
45.39
4.45
678
944
2.493973
CTCTCGCTGAGACTGGGC
59.506
66.667
4.47
0.00
45.39
5.36
679
945
2.036414
TCTCGCTGAGACTGGGCT
59.964
61.111
4.47
0.00
33.35
5.19
680
946
2.183811
CTCGCTGAGACTGGGCTG
59.816
66.667
0.00
0.00
0.00
4.85
681
947
2.283173
TCGCTGAGACTGGGCTGA
60.283
61.111
0.00
0.00
0.00
4.26
682
948
1.881903
CTCGCTGAGACTGGGCTGAA
61.882
60.000
0.00
0.00
0.00
3.02
683
949
1.004560
CGCTGAGACTGGGCTGAAA
60.005
57.895
0.00
0.00
0.00
2.69
684
950
1.294659
CGCTGAGACTGGGCTGAAAC
61.295
60.000
0.00
0.00
0.00
2.78
685
951
0.036022
GCTGAGACTGGGCTGAAACT
59.964
55.000
0.00
0.00
0.00
2.66
686
952
1.544314
GCTGAGACTGGGCTGAAACTT
60.544
52.381
0.00
0.00
0.00
2.66
687
953
2.421619
CTGAGACTGGGCTGAAACTTC
58.578
52.381
0.00
0.00
0.00
3.01
688
954
2.038295
CTGAGACTGGGCTGAAACTTCT
59.962
50.000
0.00
0.00
0.00
2.85
689
955
2.224378
TGAGACTGGGCTGAAACTTCTG
60.224
50.000
0.00
0.00
0.00
3.02
695
961
2.616969
GCTGAAACTTCTGCGTGGA
58.383
52.632
5.69
0.00
41.20
4.02
696
962
0.944386
GCTGAAACTTCTGCGTGGAA
59.056
50.000
5.69
0.00
41.20
3.53
697
963
1.069636
GCTGAAACTTCTGCGTGGAAG
60.070
52.381
14.66
14.66
45.68
3.46
698
964
2.483876
CTGAAACTTCTGCGTGGAAGA
58.516
47.619
20.40
1.76
43.70
2.87
699
965
3.070018
CTGAAACTTCTGCGTGGAAGAT
58.930
45.455
20.40
10.19
43.70
2.40
700
966
3.067106
TGAAACTTCTGCGTGGAAGATC
58.933
45.455
20.40
17.39
43.70
2.75
701
967
1.714794
AACTTCTGCGTGGAAGATCG
58.285
50.000
20.40
2.26
43.70
3.69
702
968
0.603569
ACTTCTGCGTGGAAGATCGT
59.396
50.000
20.40
0.00
43.70
3.73
703
969
0.994995
CTTCTGCGTGGAAGATCGTG
59.005
55.000
12.05
0.00
43.70
4.35
704
970
0.389817
TTCTGCGTGGAAGATCGTGG
60.390
55.000
0.00
0.00
0.00
4.94
705
971
2.434185
TGCGTGGAAGATCGTGGC
60.434
61.111
0.00
0.00
0.00
5.01
706
972
2.125512
GCGTGGAAGATCGTGGCT
60.126
61.111
0.00
0.00
0.00
4.75
707
973
2.456119
GCGTGGAAGATCGTGGCTG
61.456
63.158
0.00
0.00
0.00
4.85
708
974
1.079819
CGTGGAAGATCGTGGCTGT
60.080
57.895
0.00
0.00
0.00
4.40
709
975
1.078759
CGTGGAAGATCGTGGCTGTC
61.079
60.000
0.00
0.00
0.00
3.51
710
976
0.037326
GTGGAAGATCGTGGCTGTCA
60.037
55.000
0.00
0.00
0.00
3.58
711
977
0.904649
TGGAAGATCGTGGCTGTCAT
59.095
50.000
0.00
0.00
0.00
3.06
712
978
1.278985
TGGAAGATCGTGGCTGTCATT
59.721
47.619
0.00
0.00
0.00
2.57
713
979
1.667724
GGAAGATCGTGGCTGTCATTG
59.332
52.381
0.00
0.00
0.00
2.82
714
980
1.667724
GAAGATCGTGGCTGTCATTGG
59.332
52.381
0.00
0.00
0.00
3.16
715
981
0.745845
AGATCGTGGCTGTCATTGGC
60.746
55.000
0.00
0.00
0.00
4.52
716
982
2.040213
GATCGTGGCTGTCATTGGCG
62.040
60.000
0.00
0.00
0.00
5.69
717
983
4.465512
CGTGGCTGTCATTGGCGC
62.466
66.667
0.00
0.00
37.18
6.53
718
984
4.120331
GTGGCTGTCATTGGCGCC
62.120
66.667
22.73
22.73
42.78
6.53
721
987
3.869272
GCTGTCATTGGCGCCGAG
61.869
66.667
23.38
14.33
0.00
4.63
722
988
2.125552
CTGTCATTGGCGCCGAGA
60.126
61.111
23.38
16.57
0.00
4.04
723
989
1.741401
CTGTCATTGGCGCCGAGAA
60.741
57.895
23.38
11.68
0.00
2.87
724
990
1.699656
CTGTCATTGGCGCCGAGAAG
61.700
60.000
23.38
14.35
0.00
2.85
725
991
2.819595
TCATTGGCGCCGAGAAGC
60.820
61.111
23.38
0.00
0.00
3.86
726
992
2.821366
CATTGGCGCCGAGAAGCT
60.821
61.111
23.38
0.85
0.00
3.74
727
993
2.821366
ATTGGCGCCGAGAAGCTG
60.821
61.111
23.38
0.00
0.00
4.24
728
994
3.612247
ATTGGCGCCGAGAAGCTGT
62.612
57.895
23.38
0.00
0.00
4.40
729
995
3.825160
TTGGCGCCGAGAAGCTGTT
62.825
57.895
23.90
0.00
0.00
3.16
730
996
3.793144
GGCGCCGAGAAGCTGTTG
61.793
66.667
12.58
0.00
0.00
3.33
731
997
4.451652
GCGCCGAGAAGCTGTTGC
62.452
66.667
0.00
0.00
40.05
4.17
760
1026
8.919777
TTTTAGAAGAATTAATAGGGCTAGCC
57.080
34.615
26.55
26.55
0.00
3.93
772
1038
2.776312
GGCTAGCCCGCTTAATTTTC
57.224
50.000
24.19
0.00
0.00
2.29
773
1039
2.298610
GGCTAGCCCGCTTAATTTTCT
58.701
47.619
24.19
0.00
0.00
2.52
774
1040
2.688446
GGCTAGCCCGCTTAATTTTCTT
59.312
45.455
24.19
0.00
0.00
2.52
775
1041
3.243101
GGCTAGCCCGCTTAATTTTCTTC
60.243
47.826
24.19
0.00
0.00
2.87
776
1042
3.628032
GCTAGCCCGCTTAATTTTCTTCT
59.372
43.478
2.29
0.00
0.00
2.85
777
1043
4.096532
GCTAGCCCGCTTAATTTTCTTCTT
59.903
41.667
2.29
0.00
0.00
2.52
778
1044
4.440839
AGCCCGCTTAATTTTCTTCTTG
57.559
40.909
0.00
0.00
0.00
3.02
779
1045
3.826729
AGCCCGCTTAATTTTCTTCTTGT
59.173
39.130
0.00
0.00
0.00
3.16
780
1046
4.082733
AGCCCGCTTAATTTTCTTCTTGTC
60.083
41.667
0.00
0.00
0.00
3.18
781
1047
4.733850
CCCGCTTAATTTTCTTCTTGTCC
58.266
43.478
0.00
0.00
0.00
4.02
782
1048
4.217550
CCCGCTTAATTTTCTTCTTGTCCA
59.782
41.667
0.00
0.00
0.00
4.02
783
1049
5.278758
CCCGCTTAATTTTCTTCTTGTCCAA
60.279
40.000
0.00
0.00
0.00
3.53
784
1050
6.389906
CCGCTTAATTTTCTTCTTGTCCAAT
58.610
36.000
0.00
0.00
0.00
3.16
785
1051
6.308766
CCGCTTAATTTTCTTCTTGTCCAATG
59.691
38.462
0.00
0.00
0.00
2.82
786
1052
6.308766
CGCTTAATTTTCTTCTTGTCCAATGG
59.691
38.462
0.00
0.00
0.00
3.16
787
1053
6.591448
GCTTAATTTTCTTCTTGTCCAATGGG
59.409
38.462
0.00
0.00
0.00
4.00
788
1054
7.525360
GCTTAATTTTCTTCTTGTCCAATGGGA
60.525
37.037
0.00
0.00
42.29
4.37
789
1055
5.990120
ATTTTCTTCTTGTCCAATGGGAG
57.010
39.130
0.00
0.00
46.12
4.30
790
1056
2.496899
TCTTCTTGTCCAATGGGAGC
57.503
50.000
0.00
0.00
46.12
4.70
791
1057
1.704628
TCTTCTTGTCCAATGGGAGCA
59.295
47.619
0.00
0.00
46.12
4.26
792
1058
1.815003
CTTCTTGTCCAATGGGAGCAC
59.185
52.381
0.00
0.00
46.12
4.40
793
1059
0.770499
TCTTGTCCAATGGGAGCACA
59.230
50.000
0.00
0.00
46.12
4.57
794
1060
1.355381
TCTTGTCCAATGGGAGCACAT
59.645
47.619
0.00
0.00
46.12
3.21
795
1061
2.173519
CTTGTCCAATGGGAGCACATT
58.826
47.619
0.00
0.00
46.12
2.71
796
1062
3.010027
TCTTGTCCAATGGGAGCACATTA
59.990
43.478
0.00
0.00
46.12
1.90
797
1063
3.448093
TGTCCAATGGGAGCACATTAA
57.552
42.857
0.00
0.00
46.12
1.40
798
1064
3.772387
TGTCCAATGGGAGCACATTAAA
58.228
40.909
0.00
0.00
46.12
1.52
799
1065
4.155709
TGTCCAATGGGAGCACATTAAAA
58.844
39.130
0.00
0.00
46.12
1.52
800
1066
4.021544
TGTCCAATGGGAGCACATTAAAAC
60.022
41.667
0.00
0.00
46.12
2.43
801
1067
4.021544
GTCCAATGGGAGCACATTAAAACA
60.022
41.667
0.00
0.00
46.12
2.83
802
1068
4.776837
TCCAATGGGAGCACATTAAAACAT
59.223
37.500
0.00
0.00
38.94
2.71
803
1069
5.248020
TCCAATGGGAGCACATTAAAACATT
59.752
36.000
0.00
0.00
38.94
2.71
804
1070
5.352016
CCAATGGGAGCACATTAAAACATTG
59.648
40.000
0.00
0.00
41.94
2.82
805
1071
4.533919
TGGGAGCACATTAAAACATTGG
57.466
40.909
0.00
0.00
0.00
3.16
806
1072
3.260380
TGGGAGCACATTAAAACATTGGG
59.740
43.478
0.00
0.00
0.00
4.12
807
1073
3.513515
GGGAGCACATTAAAACATTGGGA
59.486
43.478
0.00
0.00
0.00
4.37
808
1074
4.162131
GGGAGCACATTAAAACATTGGGAT
59.838
41.667
0.00
0.00
0.00
3.85
809
1075
5.111293
GGAGCACATTAAAACATTGGGATG
58.889
41.667
0.00
0.00
39.25
3.51
810
1076
5.088680
AGCACATTAAAACATTGGGATGG
57.911
39.130
0.00
0.00
37.60
3.51
811
1077
4.080975
AGCACATTAAAACATTGGGATGGG
60.081
41.667
0.00
0.00
37.60
4.00
812
1078
4.081198
GCACATTAAAACATTGGGATGGGA
60.081
41.667
0.00
0.00
37.60
4.37
813
1079
5.396660
GCACATTAAAACATTGGGATGGGAT
60.397
40.000
0.00
0.00
37.60
3.85
814
1080
6.050432
CACATTAAAACATTGGGATGGGATG
58.950
40.000
0.00
0.00
37.60
3.51
815
1081
5.130809
ACATTAAAACATTGGGATGGGATGG
59.869
40.000
0.00
0.00
37.60
3.51
816
1082
1.499368
AAACATTGGGATGGGATGGC
58.501
50.000
0.00
0.00
37.60
4.40
817
1083
0.638292
AACATTGGGATGGGATGGCT
59.362
50.000
0.00
0.00
37.60
4.75
818
1084
1.533187
ACATTGGGATGGGATGGCTA
58.467
50.000
0.00
0.00
37.60
3.93
819
1085
1.858910
ACATTGGGATGGGATGGCTAA
59.141
47.619
0.00
0.00
37.60
3.09
820
1086
2.452047
ACATTGGGATGGGATGGCTAAT
59.548
45.455
0.00
0.00
37.60
1.73
821
1087
2.978156
TTGGGATGGGATGGCTAATC
57.022
50.000
0.00
0.00
34.19
1.75
829
1095
3.188748
GATGGCTAATCCTCCCCCT
57.811
57.895
0.00
0.00
35.26
4.79
830
1096
0.988063
GATGGCTAATCCTCCCCCTC
59.012
60.000
0.00
0.00
35.26
4.30
831
1097
0.476611
ATGGCTAATCCTCCCCCTCC
60.477
60.000
0.00
0.00
35.26
4.30
832
1098
1.848431
GGCTAATCCTCCCCCTCCC
60.848
68.421
0.00
0.00
0.00
4.30
833
1099
1.073706
GCTAATCCTCCCCCTCCCA
60.074
63.158
0.00
0.00
0.00
4.37
834
1100
1.419720
GCTAATCCTCCCCCTCCCAC
61.420
65.000
0.00
0.00
0.00
4.61
835
1101
0.768609
CTAATCCTCCCCCTCCCACC
60.769
65.000
0.00
0.00
0.00
4.61
836
1102
1.243230
TAATCCTCCCCCTCCCACCT
61.243
60.000
0.00
0.00
0.00
4.00
837
1103
2.865183
AATCCTCCCCCTCCCACCTG
62.865
65.000
0.00
0.00
0.00
4.00
844
1110
4.767255
CCTCCCACCTGCAGCGAC
62.767
72.222
8.66
0.00
0.00
5.19
845
1111
4.767255
CTCCCACCTGCAGCGACC
62.767
72.222
8.66
0.00
0.00
4.79
848
1114
4.335647
CCACCTGCAGCGACCCTT
62.336
66.667
8.66
0.00
0.00
3.95
849
1115
2.662596
CACCTGCAGCGACCCTTA
59.337
61.111
8.66
0.00
0.00
2.69
850
1116
1.741770
CACCTGCAGCGACCCTTAC
60.742
63.158
8.66
0.00
0.00
2.34
851
1117
2.125106
CCTGCAGCGACCCTTACC
60.125
66.667
8.66
0.00
0.00
2.85
852
1118
2.660064
CCTGCAGCGACCCTTACCT
61.660
63.158
8.66
0.00
0.00
3.08
853
1119
1.327690
CCTGCAGCGACCCTTACCTA
61.328
60.000
8.66
0.00
0.00
3.08
854
1120
0.535335
CTGCAGCGACCCTTACCTAA
59.465
55.000
0.00
0.00
0.00
2.69
855
1121
0.978151
TGCAGCGACCCTTACCTAAA
59.022
50.000
0.00
0.00
0.00
1.85
856
1122
1.557832
TGCAGCGACCCTTACCTAAAT
59.442
47.619
0.00
0.00
0.00
1.40
857
1123
2.026636
TGCAGCGACCCTTACCTAAATT
60.027
45.455
0.00
0.00
0.00
1.82
858
1124
3.014623
GCAGCGACCCTTACCTAAATTT
58.985
45.455
0.00
0.00
0.00
1.82
859
1125
3.442625
GCAGCGACCCTTACCTAAATTTT
59.557
43.478
0.00
0.00
0.00
1.82
860
1126
4.082408
GCAGCGACCCTTACCTAAATTTTT
60.082
41.667
0.00
0.00
0.00
1.94
906
1172
1.304547
CAGTCCCCACTCCGAGTCT
60.305
63.158
0.00
0.00
0.00
3.24
916
1182
0.754957
CTCCGAGTCTCCAGCTCCAT
60.755
60.000
0.00
0.00
0.00
3.41
924
1190
0.392336
CTCCAGCTCCATAGGCACTC
59.608
60.000
0.00
0.00
41.75
3.51
926
1192
1.068753
CAGCTCCATAGGCACTCCG
59.931
63.158
0.00
0.00
41.75
4.63
927
1193
2.280457
GCTCCATAGGCACTCCGC
60.280
66.667
0.00
0.00
41.75
5.54
1044
1354
3.314331
AGGCTCACCCACGACCTG
61.314
66.667
0.00
0.00
36.11
4.00
1153
1507
2.509336
CGCGCCGGAAGAAGATGT
60.509
61.111
5.05
0.00
0.00
3.06
1246
1624
0.042013
CGAGTACGCGGATCTGTCTC
60.042
60.000
12.47
3.03
0.00
3.36
1261
1639
0.036294
GTCTCCTTTCCCTTGGTCGG
60.036
60.000
0.00
0.00
0.00
4.79
1347
1731
1.139853
GAGGATTCCTGCGATGGACTT
59.860
52.381
10.74
0.00
35.58
3.01
1415
1805
2.437281
ACATGGTCTCCAATCCAGCTAG
59.563
50.000
0.00
0.00
36.95
3.42
1453
1846
1.384989
GCCTCACTCTGGCTACGCTA
61.385
60.000
0.00
0.00
46.38
4.26
1489
1892
2.028748
GCTTACCTGGGTTTCGACAGTA
60.029
50.000
0.00
0.00
32.90
2.74
1537
1940
1.948834
TCGAGTTTGTACACGACTGGA
59.051
47.619
14.10
14.65
41.37
3.86
1538
1941
2.031420
TCGAGTTTGTACACGACTGGAG
60.031
50.000
14.10
7.15
41.37
3.86
1548
1951
2.273179
CGACTGGAGACACCCGGAA
61.273
63.158
0.73
0.00
38.00
4.30
1552
1955
2.048503
GGAGACACCCGGAACACG
60.049
66.667
0.73
0.00
43.80
4.49
1602
2008
8.160106
ACAGAAGTGAGGATTTACTCTTCAAAT
58.840
33.333
0.00
0.00
41.19
2.32
1773
6164
1.153289
CGTCCTGCTGCCAGCTAAT
60.153
57.895
18.96
0.00
42.97
1.73
1784
6175
1.687123
GCCAGCTAATAGTTCCTCGGA
59.313
52.381
0.00
0.00
0.00
4.55
1834
6237
6.979238
GCTATTGTATATCAACTCCCGATACC
59.021
42.308
0.00
0.00
38.97
2.73
1857
6260
4.047822
GCTCAGACCGATCTTTGACTATG
58.952
47.826
0.00
0.00
30.42
2.23
1877
6280
4.325028
TGTTGGTTTACGCTCTTAGTGA
57.675
40.909
0.00
0.00
0.00
3.41
1968
6383
9.783081
AAGCTTTCAAATGTTATTCCAAAGAAT
57.217
25.926
0.00
0.00
44.95
2.40
2036
6472
6.053650
TCTTCATAGCTCATTCAGACAATGG
58.946
40.000
0.00
0.00
0.00
3.16
2102
6542
5.930135
ACATCACCTTGATCATAAGTACCC
58.070
41.667
0.00
0.00
34.28
3.69
2136
6579
5.395103
GCAATTTTTCCCATATGTGCCACTA
60.395
40.000
1.24
0.00
0.00
2.74
2261
6747
1.737838
TTCCAACGGAGATGATGCAC
58.262
50.000
0.00
0.00
31.21
4.57
2355
6845
5.449297
TTGATGTTTCCCTCATGGATGTA
57.551
39.130
0.00
0.00
44.66
2.29
2414
6909
1.396996
GCAACAAGTACGGCTGTATGG
59.603
52.381
9.01
4.31
32.11
2.74
2415
6910
1.396996
CAACAAGTACGGCTGTATGGC
59.603
52.381
9.01
0.00
32.11
4.40
2541
7137
8.141909
GGTATGAGTTGTAGTATGTTCTATGCA
58.858
37.037
0.00
0.00
0.00
3.96
2563
7163
6.789262
GCATTTTGATGTGCAACTAGTAGAT
58.211
36.000
3.59
0.00
40.94
1.98
2593
7208
5.633601
TGAGACGCTTTAGTGTGTTCTATTG
59.366
40.000
0.00
0.00
39.12
1.90
2877
8187
8.202745
AGTATCTAAATTGAAAGTACAGCTGC
57.797
34.615
15.27
0.00
0.00
5.25
2918
8228
6.312399
TCAATGCTTTAACAGTGTTGGTAG
57.688
37.500
18.90
12.80
36.98
3.18
3013
8388
2.091610
TCTAGCAGTCTAGCCCATGTCT
60.092
50.000
0.00
0.00
41.59
3.41
3015
8390
1.484240
AGCAGTCTAGCCCATGTCTTC
59.516
52.381
0.00
0.00
34.23
2.87
3016
8391
1.474143
GCAGTCTAGCCCATGTCTTCC
60.474
57.143
0.00
0.00
0.00
3.46
3031
8406
3.005897
TGTCTTCCTTGTACTCACTGCTC
59.994
47.826
0.00
0.00
0.00
4.26
3045
8444
7.897575
ACTCACTGCTCTAGTTTTTCTATTG
57.102
36.000
0.00
0.00
37.60
1.90
3064
8463
4.524802
TTGGTGGCATCCTGATATTTCT
57.475
40.909
0.00
0.00
0.00
2.52
3171
10545
4.101430
GGAGAGATTGCAGAGAGGATTCTT
59.899
45.833
0.00
0.00
32.53
2.52
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
1
2
4.210331
CAGCCCAGCTAAATATTGGACTT
58.790
43.478
0.00
0.00
36.40
3.01
2
3
3.435601
CCAGCCCAGCTAAATATTGGACT
60.436
47.826
0.00
0.00
36.40
3.85
3
4
2.887152
CCAGCCCAGCTAAATATTGGAC
59.113
50.000
0.00
0.00
36.40
4.02
4
5
2.158475
CCCAGCCCAGCTAAATATTGGA
60.158
50.000
0.00
0.00
36.40
3.53
5
6
2.242043
CCCAGCCCAGCTAAATATTGG
58.758
52.381
0.00
0.00
36.40
3.16
6
7
1.615392
GCCCAGCCCAGCTAAATATTG
59.385
52.381
0.00
0.00
36.40
1.90
7
8
1.481242
GGCCCAGCCCAGCTAAATATT
60.481
52.381
0.00
0.00
44.06
1.28
8
9
0.113190
GGCCCAGCCCAGCTAAATAT
59.887
55.000
0.00
0.00
44.06
1.28
9
10
1.536676
GGCCCAGCCCAGCTAAATA
59.463
57.895
0.00
0.00
44.06
1.40
10
11
2.280079
GGCCCAGCCCAGCTAAAT
59.720
61.111
0.00
0.00
44.06
1.40
20
21
1.205055
ACTACTCTTAAGGGCCCAGC
58.795
55.000
27.56
0.00
0.00
4.85
21
22
3.644335
ACTACTACTCTTAAGGGCCCAG
58.356
50.000
27.56
15.16
0.00
4.45
22
23
3.771071
ACTACTACTCTTAAGGGCCCA
57.229
47.619
27.56
0.00
0.00
5.36
23
24
4.802307
ACTACTACTACTCTTAAGGGCCC
58.198
47.826
16.46
16.46
0.00
5.80
24
25
6.600388
ACTACTACTACTACTCTTAAGGGCC
58.400
44.000
1.03
0.00
0.00
5.80
25
26
8.646900
TCTACTACTACTACTACTCTTAAGGGC
58.353
40.741
1.03
0.00
0.00
5.19
30
31
9.906660
GCGAATCTACTACTACTACTACTCTTA
57.093
37.037
0.00
0.00
0.00
2.10
31
32
7.872483
GGCGAATCTACTACTACTACTACTCTT
59.128
40.741
0.00
0.00
0.00
2.85
32
33
7.378181
GGCGAATCTACTACTACTACTACTCT
58.622
42.308
0.00
0.00
0.00
3.24
33
34
6.307800
CGGCGAATCTACTACTACTACTACTC
59.692
46.154
0.00
0.00
0.00
2.59
34
35
6.155827
CGGCGAATCTACTACTACTACTACT
58.844
44.000
0.00
0.00
0.00
2.57
35
36
5.923684
ACGGCGAATCTACTACTACTACTAC
59.076
44.000
16.62
0.00
0.00
2.73
36
37
6.090483
ACGGCGAATCTACTACTACTACTA
57.910
41.667
16.62
0.00
0.00
1.82
37
38
4.954875
ACGGCGAATCTACTACTACTACT
58.045
43.478
16.62
0.00
0.00
2.57
38
39
5.007136
ACAACGGCGAATCTACTACTACTAC
59.993
44.000
16.62
0.00
0.00
2.73
39
40
5.118990
ACAACGGCGAATCTACTACTACTA
58.881
41.667
16.62
0.00
0.00
1.82
40
41
3.944015
ACAACGGCGAATCTACTACTACT
59.056
43.478
16.62
0.00
0.00
2.57
41
42
4.034975
AGACAACGGCGAATCTACTACTAC
59.965
45.833
16.62
0.00
0.00
2.73
42
43
4.034858
CAGACAACGGCGAATCTACTACTA
59.965
45.833
16.62
0.00
0.00
1.82
43
44
3.015327
AGACAACGGCGAATCTACTACT
58.985
45.455
16.62
0.00
0.00
2.57
44
45
3.106672
CAGACAACGGCGAATCTACTAC
58.893
50.000
16.62
0.00
0.00
2.73
45
46
2.751259
ACAGACAACGGCGAATCTACTA
59.249
45.455
16.62
0.00
0.00
1.82
46
47
1.544691
ACAGACAACGGCGAATCTACT
59.455
47.619
16.62
1.94
0.00
2.57
47
48
1.992170
ACAGACAACGGCGAATCTAC
58.008
50.000
16.62
0.00
0.00
2.59
48
49
2.159338
GGTACAGACAACGGCGAATCTA
60.159
50.000
16.62
0.00
0.00
1.98
49
50
1.403780
GGTACAGACAACGGCGAATCT
60.404
52.381
16.62
10.30
0.00
2.40
50
51
0.997196
GGTACAGACAACGGCGAATC
59.003
55.000
16.62
7.86
0.00
2.52
51
52
0.319083
TGGTACAGACAACGGCGAAT
59.681
50.000
16.62
0.00
0.00
3.34
52
53
1.740905
TGGTACAGACAACGGCGAA
59.259
52.632
16.62
0.00
0.00
4.70
53
54
3.445888
TGGTACAGACAACGGCGA
58.554
55.556
16.62
0.00
0.00
5.54
166
167
0.916086
ACAACAGACCACCCACTTGA
59.084
50.000
0.00
0.00
0.00
3.02
224
225
2.620367
GGGCCCAACTGTCATAATCACA
60.620
50.000
19.95
0.00
0.00
3.58
226
227
1.064017
GGGGCCCAACTGTCATAATCA
60.064
52.381
26.86
0.00
0.00
2.57
282
283
0.521291
CCACATGCCAGTTAACGGTG
59.479
55.000
14.94
10.22
0.00
4.94
297
298
1.559219
CACTGACATATGGGTCCCACA
59.441
52.381
14.57
0.04
35.80
4.17
492
495
3.251318
GAGACAGGTCGTGCGACGT
62.251
63.158
16.88
15.03
45.41
4.34
499
502
2.164338
GAGGAAAGAGAGACAGGTCGT
58.836
52.381
0.00
0.00
34.09
4.34
500
503
2.442413
AGAGGAAAGAGAGACAGGTCG
58.558
52.381
0.00
0.00
34.09
4.79
536
539
0.883370
GAACCCCAACACGTCACCTC
60.883
60.000
0.00
0.00
0.00
3.85
554
820
4.087892
GCAAGGAGCTCCGCCTGA
62.088
66.667
26.95
0.00
42.08
3.86
590
856
2.510238
CGAGAAGGCTGGCGAAGG
60.510
66.667
0.00
0.00
0.00
3.46
591
857
1.518133
CTCGAGAAGGCTGGCGAAG
60.518
63.158
6.58
0.00
31.89
3.79
592
858
2.573869
CTCGAGAAGGCTGGCGAA
59.426
61.111
6.58
0.00
31.89
4.70
593
859
4.135153
GCTCGAGAAGGCTGGCGA
62.135
66.667
18.75
6.47
0.00
5.54
594
860
4.140599
AGCTCGAGAAGGCTGGCG
62.141
66.667
18.75
0.00
37.41
5.69
595
861
2.202864
GAGCTCGAGAAGGCTGGC
60.203
66.667
18.75
0.00
39.05
4.85
596
862
2.103934
CGAGCTCGAGAAGGCTGG
59.896
66.667
32.06
4.12
43.02
4.85
597
863
2.103934
CCGAGCTCGAGAAGGCTG
59.896
66.667
36.59
13.86
43.02
4.85
598
864
3.832492
GCCGAGCTCGAGAAGGCT
61.832
66.667
36.59
15.89
44.06
4.58
600
866
4.560856
CCGCCGAGCTCGAGAAGG
62.561
72.222
36.59
26.31
43.02
3.46
601
867
4.560856
CCCGCCGAGCTCGAGAAG
62.561
72.222
36.59
20.69
43.02
2.85
610
876
4.821589
GTCTTCAGCCCCGCCGAG
62.822
72.222
0.00
0.00
0.00
4.63
618
884
4.077188
GTGCACGCGTCTTCAGCC
62.077
66.667
9.86
0.00
0.00
4.85
619
885
4.077188
GGTGCACGCGTCTTCAGC
62.077
66.667
9.86
13.78
0.00
4.26
620
886
3.414700
GGGTGCACGCGTCTTCAG
61.415
66.667
18.81
0.00
0.00
3.02
621
887
3.923864
AGGGTGCACGCGTCTTCA
61.924
61.111
25.95
4.82
0.00
3.02
622
888
3.414700
CAGGGTGCACGCGTCTTC
61.415
66.667
25.95
1.62
0.00
2.87
644
910
2.111878
GGCACACACTCCAGCAGT
59.888
61.111
0.00
0.00
34.67
4.40
645
911
1.670406
GAGGCACACACTCCAGCAG
60.670
63.158
0.00
0.00
0.00
4.24
646
912
2.104572
GAGAGGCACACACTCCAGCA
62.105
60.000
0.00
0.00
35.58
4.41
647
913
1.375268
GAGAGGCACACACTCCAGC
60.375
63.158
0.00
0.00
35.58
4.85
648
914
1.080230
CGAGAGGCACACACTCCAG
60.080
63.158
0.00
0.00
35.58
3.86
649
915
3.051210
CGAGAGGCACACACTCCA
58.949
61.111
0.00
0.00
35.58
3.86
650
916
2.433318
GCGAGAGGCACACACTCC
60.433
66.667
0.00
0.00
42.87
3.85
660
926
3.074999
GCCCAGTCTCAGCGAGAGG
62.075
68.421
8.25
7.82
44.81
3.69
661
927
2.051518
AGCCCAGTCTCAGCGAGAG
61.052
63.158
8.25
5.79
46.14
3.20
662
928
2.036414
AGCCCAGTCTCAGCGAGA
59.964
61.111
4.47
4.47
36.22
4.04
663
929
1.881903
TTCAGCCCAGTCTCAGCGAG
61.882
60.000
0.00
0.00
0.00
5.03
664
930
1.471829
TTTCAGCCCAGTCTCAGCGA
61.472
55.000
0.00
0.00
0.00
4.93
665
931
1.004560
TTTCAGCCCAGTCTCAGCG
60.005
57.895
0.00
0.00
0.00
5.18
666
932
0.036022
AGTTTCAGCCCAGTCTCAGC
59.964
55.000
0.00
0.00
0.00
4.26
667
933
2.038295
AGAAGTTTCAGCCCAGTCTCAG
59.962
50.000
0.00
0.00
0.00
3.35
668
934
2.050144
AGAAGTTTCAGCCCAGTCTCA
58.950
47.619
0.00
0.00
0.00
3.27
669
935
2.421619
CAGAAGTTTCAGCCCAGTCTC
58.578
52.381
0.00
0.00
0.00
3.36
670
936
1.544314
GCAGAAGTTTCAGCCCAGTCT
60.544
52.381
0.00
0.00
34.10
3.24
671
937
0.877743
GCAGAAGTTTCAGCCCAGTC
59.122
55.000
0.00
0.00
34.10
3.51
672
938
0.886490
CGCAGAAGTTTCAGCCCAGT
60.886
55.000
4.04
0.00
36.48
4.00
673
939
0.886490
ACGCAGAAGTTTCAGCCCAG
60.886
55.000
4.04
0.00
36.48
4.45
674
940
1.148273
ACGCAGAAGTTTCAGCCCA
59.852
52.632
4.04
0.00
36.48
5.36
675
941
1.576421
CACGCAGAAGTTTCAGCCC
59.424
57.895
4.04
0.00
36.48
5.19
676
942
0.884704
TCCACGCAGAAGTTTCAGCC
60.885
55.000
4.04
0.00
36.48
4.85
677
943
0.944386
TTCCACGCAGAAGTTTCAGC
59.056
50.000
0.00
0.00
36.49
4.26
678
944
2.483876
TCTTCCACGCAGAAGTTTCAG
58.516
47.619
13.08
0.00
43.17
3.02
679
945
2.613026
TCTTCCACGCAGAAGTTTCA
57.387
45.000
13.08
0.00
43.17
2.69
680
946
2.092838
CGATCTTCCACGCAGAAGTTTC
59.907
50.000
13.08
10.74
43.17
2.78
681
947
2.069273
CGATCTTCCACGCAGAAGTTT
58.931
47.619
13.08
4.60
43.17
2.66
682
948
1.000955
ACGATCTTCCACGCAGAAGTT
59.999
47.619
13.08
6.61
43.17
2.66
683
949
0.603569
ACGATCTTCCACGCAGAAGT
59.396
50.000
13.08
3.38
43.17
3.01
684
950
0.994995
CACGATCTTCCACGCAGAAG
59.005
55.000
8.38
8.38
43.88
2.85
685
951
0.389817
CCACGATCTTCCACGCAGAA
60.390
55.000
0.00
0.00
0.00
3.02
686
952
1.215382
CCACGATCTTCCACGCAGA
59.785
57.895
0.00
0.00
0.00
4.26
687
953
2.456119
GCCACGATCTTCCACGCAG
61.456
63.158
0.00
0.00
0.00
5.18
688
954
2.434185
GCCACGATCTTCCACGCA
60.434
61.111
0.00
0.00
0.00
5.24
689
955
2.125512
AGCCACGATCTTCCACGC
60.126
61.111
0.00
0.00
0.00
5.34
690
956
1.078759
GACAGCCACGATCTTCCACG
61.079
60.000
0.00
0.00
0.00
4.94
691
957
0.037326
TGACAGCCACGATCTTCCAC
60.037
55.000
0.00
0.00
0.00
4.02
692
958
0.904649
ATGACAGCCACGATCTTCCA
59.095
50.000
0.00
0.00
0.00
3.53
693
959
1.667724
CAATGACAGCCACGATCTTCC
59.332
52.381
0.00
0.00
0.00
3.46
694
960
1.667724
CCAATGACAGCCACGATCTTC
59.332
52.381
0.00
0.00
0.00
2.87
695
961
1.742761
CCAATGACAGCCACGATCTT
58.257
50.000
0.00
0.00
0.00
2.40
696
962
0.745845
GCCAATGACAGCCACGATCT
60.746
55.000
0.00
0.00
0.00
2.75
697
963
1.723870
GCCAATGACAGCCACGATC
59.276
57.895
0.00
0.00
0.00
3.69
698
964
2.108514
CGCCAATGACAGCCACGAT
61.109
57.895
0.00
0.00
0.00
3.73
699
965
2.741985
CGCCAATGACAGCCACGA
60.742
61.111
0.00
0.00
0.00
4.35
700
966
4.465512
GCGCCAATGACAGCCACG
62.466
66.667
0.00
0.00
0.00
4.94
704
970
3.869272
CTCGGCGCCAATGACAGC
61.869
66.667
28.98
0.00
0.00
4.40
705
971
1.699656
CTTCTCGGCGCCAATGACAG
61.700
60.000
28.98
15.12
0.00
3.51
706
972
1.741401
CTTCTCGGCGCCAATGACA
60.741
57.895
28.98
0.00
0.00
3.58
707
973
3.093278
CTTCTCGGCGCCAATGAC
58.907
61.111
28.98
0.00
0.00
3.06
708
974
2.819595
GCTTCTCGGCGCCAATGA
60.820
61.111
28.98
17.77
0.00
2.57
709
975
2.821366
AGCTTCTCGGCGCCAATG
60.821
61.111
28.98
15.55
37.29
2.82
710
976
2.821366
CAGCTTCTCGGCGCCAAT
60.821
61.111
28.98
0.00
37.29
3.16
711
977
3.825160
AACAGCTTCTCGGCGCCAA
62.825
57.895
28.98
7.25
37.29
4.52
712
978
4.314440
AACAGCTTCTCGGCGCCA
62.314
61.111
28.98
12.94
37.29
5.69
713
979
3.793144
CAACAGCTTCTCGGCGCC
61.793
66.667
19.07
19.07
37.29
6.53
714
980
4.451652
GCAACAGCTTCTCGGCGC
62.452
66.667
0.00
0.00
37.29
6.53
715
981
2.320587
AAGCAACAGCTTCTCGGCG
61.321
57.895
0.00
0.00
45.01
6.46
716
982
3.660621
AAGCAACAGCTTCTCGGC
58.339
55.556
0.00
0.00
45.01
5.54
734
1000
9.350951
GGCTAGCCCTATTAATTCTTCTAAAAA
57.649
33.333
24.19
0.00
0.00
1.94
735
1001
8.919777
GGCTAGCCCTATTAATTCTTCTAAAA
57.080
34.615
24.19
0.00
0.00
1.52
753
1019
2.298610
AGAAAATTAAGCGGGCTAGCC
58.701
47.619
26.55
26.55
38.01
3.93
754
1020
3.628032
AGAAGAAAATTAAGCGGGCTAGC
59.372
43.478
6.04
6.04
37.41
3.42
755
1021
5.123979
ACAAGAAGAAAATTAAGCGGGCTAG
59.876
40.000
0.00
0.00
0.00
3.42
756
1022
5.007682
ACAAGAAGAAAATTAAGCGGGCTA
58.992
37.500
0.00
0.00
0.00
3.93
757
1023
3.826729
ACAAGAAGAAAATTAAGCGGGCT
59.173
39.130
0.00
0.00
0.00
5.19
758
1024
4.166523
GACAAGAAGAAAATTAAGCGGGC
58.833
43.478
0.00
0.00
0.00
6.13
759
1025
4.217550
TGGACAAGAAGAAAATTAAGCGGG
59.782
41.667
0.00
0.00
0.00
6.13
760
1026
5.371115
TGGACAAGAAGAAAATTAAGCGG
57.629
39.130
0.00
0.00
0.00
5.52
761
1027
6.308766
CCATTGGACAAGAAGAAAATTAAGCG
59.691
38.462
0.00
0.00
0.00
4.68
762
1028
6.591448
CCCATTGGACAAGAAGAAAATTAAGC
59.409
38.462
3.62
0.00
0.00
3.09
763
1029
7.895759
TCCCATTGGACAAGAAGAAAATTAAG
58.104
34.615
3.62
0.00
35.03
1.85
764
1030
7.525360
GCTCCCATTGGACAAGAAGAAAATTAA
60.525
37.037
3.62
0.00
35.03
1.40
765
1031
6.071391
GCTCCCATTGGACAAGAAGAAAATTA
60.071
38.462
3.62
0.00
35.03
1.40
766
1032
5.279657
GCTCCCATTGGACAAGAAGAAAATT
60.280
40.000
3.62
0.00
35.03
1.82
767
1033
4.221482
GCTCCCATTGGACAAGAAGAAAAT
59.779
41.667
3.62
0.00
35.03
1.82
768
1034
3.573967
GCTCCCATTGGACAAGAAGAAAA
59.426
43.478
3.62
0.00
35.03
2.29
769
1035
3.157087
GCTCCCATTGGACAAGAAGAAA
58.843
45.455
3.62
0.00
35.03
2.52
770
1036
2.108075
TGCTCCCATTGGACAAGAAGAA
59.892
45.455
3.62
0.00
35.03
2.52
771
1037
1.704628
TGCTCCCATTGGACAAGAAGA
59.295
47.619
3.62
0.00
35.03
2.87
772
1038
1.815003
GTGCTCCCATTGGACAAGAAG
59.185
52.381
3.62
0.00
35.03
2.85
773
1039
1.144708
TGTGCTCCCATTGGACAAGAA
59.855
47.619
3.62
0.00
35.03
2.52
774
1040
0.770499
TGTGCTCCCATTGGACAAGA
59.230
50.000
3.62
0.00
35.03
3.02
775
1041
1.843368
ATGTGCTCCCATTGGACAAG
58.157
50.000
3.62
0.00
39.08
3.16
776
1042
2.307496
AATGTGCTCCCATTGGACAA
57.693
45.000
3.62
0.00
39.08
3.18
777
1043
3.448093
TTAATGTGCTCCCATTGGACA
57.552
42.857
3.62
0.41
39.87
4.02
778
1044
4.021544
TGTTTTAATGTGCTCCCATTGGAC
60.022
41.667
3.62
0.00
35.85
4.02
779
1045
4.155709
TGTTTTAATGTGCTCCCATTGGA
58.844
39.130
3.62
0.00
35.85
3.53
780
1046
4.533919
TGTTTTAATGTGCTCCCATTGG
57.466
40.909
0.00
0.00
35.85
3.16
781
1047
5.352016
CCAATGTTTTAATGTGCTCCCATTG
59.648
40.000
0.00
0.00
38.27
2.82
782
1048
5.490159
CCAATGTTTTAATGTGCTCCCATT
58.510
37.500
0.00
0.00
38.54
3.16
783
1049
4.080975
CCCAATGTTTTAATGTGCTCCCAT
60.081
41.667
0.00
0.00
0.00
4.00
784
1050
3.260380
CCCAATGTTTTAATGTGCTCCCA
59.740
43.478
0.00
0.00
0.00
4.37
785
1051
3.513515
TCCCAATGTTTTAATGTGCTCCC
59.486
43.478
0.00
0.00
0.00
4.30
786
1052
4.799564
TCCCAATGTTTTAATGTGCTCC
57.200
40.909
0.00
0.00
0.00
4.70
787
1053
5.111293
CCATCCCAATGTTTTAATGTGCTC
58.889
41.667
0.00
0.00
0.00
4.26
788
1054
4.080975
CCCATCCCAATGTTTTAATGTGCT
60.081
41.667
0.00
0.00
0.00
4.40
789
1055
4.081198
TCCCATCCCAATGTTTTAATGTGC
60.081
41.667
0.00
0.00
0.00
4.57
790
1056
5.674052
TCCCATCCCAATGTTTTAATGTG
57.326
39.130
0.00
0.00
0.00
3.21
791
1057
5.130809
CCATCCCATCCCAATGTTTTAATGT
59.869
40.000
0.00
0.00
0.00
2.71
792
1058
5.613329
CCATCCCATCCCAATGTTTTAATG
58.387
41.667
0.00
0.00
0.00
1.90
793
1059
4.102996
GCCATCCCATCCCAATGTTTTAAT
59.897
41.667
0.00
0.00
0.00
1.40
794
1060
3.454082
GCCATCCCATCCCAATGTTTTAA
59.546
43.478
0.00
0.00
0.00
1.52
795
1061
3.037549
GCCATCCCATCCCAATGTTTTA
58.962
45.455
0.00
0.00
0.00
1.52
796
1062
1.839354
GCCATCCCATCCCAATGTTTT
59.161
47.619
0.00
0.00
0.00
2.43
797
1063
1.008693
AGCCATCCCATCCCAATGTTT
59.991
47.619
0.00
0.00
0.00
2.83
798
1064
0.638292
AGCCATCCCATCCCAATGTT
59.362
50.000
0.00
0.00
0.00
2.71
799
1065
1.533187
TAGCCATCCCATCCCAATGT
58.467
50.000
0.00
0.00
0.00
2.71
800
1066
2.681319
TTAGCCATCCCATCCCAATG
57.319
50.000
0.00
0.00
0.00
2.82
801
1067
2.043526
GGATTAGCCATCCCATCCCAAT
59.956
50.000
1.54
0.00
45.71
3.16
802
1068
1.428912
GGATTAGCCATCCCATCCCAA
59.571
52.381
1.54
0.00
45.71
4.12
803
1069
1.075601
GGATTAGCCATCCCATCCCA
58.924
55.000
1.54
0.00
45.71
4.37
804
1070
3.987594
GGATTAGCCATCCCATCCC
57.012
57.895
1.54
0.00
45.71
3.85
811
1077
0.988063
GAGGGGGAGGATTAGCCATC
59.012
60.000
0.00
0.00
40.02
3.51
812
1078
0.476611
GGAGGGGGAGGATTAGCCAT
60.477
60.000
0.00
0.00
40.02
4.40
813
1079
1.073706
GGAGGGGGAGGATTAGCCA
60.074
63.158
0.00
0.00
40.02
4.75
814
1080
1.848431
GGGAGGGGGAGGATTAGCC
60.848
68.421
0.00
0.00
0.00
3.93
815
1081
1.073706
TGGGAGGGGGAGGATTAGC
60.074
63.158
0.00
0.00
0.00
3.09
816
1082
0.768609
GGTGGGAGGGGGAGGATTAG
60.769
65.000
0.00
0.00
0.00
1.73
817
1083
1.243230
AGGTGGGAGGGGGAGGATTA
61.243
60.000
0.00
0.00
0.00
1.75
818
1084
2.044620
GGTGGGAGGGGGAGGATT
59.955
66.667
0.00
0.00
0.00
3.01
819
1085
2.967014
AGGTGGGAGGGGGAGGAT
60.967
66.667
0.00
0.00
0.00
3.24
820
1086
4.024984
CAGGTGGGAGGGGGAGGA
62.025
72.222
0.00
0.00
0.00
3.71
827
1093
4.767255
GTCGCTGCAGGTGGGAGG
62.767
72.222
17.12
0.00
35.12
4.30
828
1094
4.767255
GGTCGCTGCAGGTGGGAG
62.767
72.222
17.12
0.00
38.13
4.30
831
1097
2.954684
TAAGGGTCGCTGCAGGTGG
61.955
63.158
17.12
0.00
0.00
4.61
832
1098
1.741770
GTAAGGGTCGCTGCAGGTG
60.742
63.158
17.12
3.03
0.00
4.00
833
1099
2.663196
GTAAGGGTCGCTGCAGGT
59.337
61.111
17.12
0.00
0.00
4.00
834
1100
1.327690
TAGGTAAGGGTCGCTGCAGG
61.328
60.000
17.12
5.82
0.00
4.85
835
1101
0.535335
TTAGGTAAGGGTCGCTGCAG
59.465
55.000
10.11
10.11
0.00
4.41
836
1102
0.978151
TTTAGGTAAGGGTCGCTGCA
59.022
50.000
0.00
0.00
0.00
4.41
837
1103
2.327200
ATTTAGGTAAGGGTCGCTGC
57.673
50.000
0.00
0.00
0.00
5.25
838
1104
5.638596
AAAAATTTAGGTAAGGGTCGCTG
57.361
39.130
0.00
0.00
0.00
5.18
869
1135
1.115326
GGGTCAGGCTGCAGGTTTTT
61.115
55.000
17.12
0.00
0.00
1.94
870
1136
1.531602
GGGTCAGGCTGCAGGTTTT
60.532
57.895
17.12
0.00
0.00
2.43
871
1137
2.116125
GGGTCAGGCTGCAGGTTT
59.884
61.111
17.12
0.00
0.00
3.27
872
1138
3.177884
TGGGTCAGGCTGCAGGTT
61.178
61.111
17.12
0.00
0.00
3.50
873
1139
3.644606
CTGGGTCAGGCTGCAGGT
61.645
66.667
17.12
0.00
0.00
4.00
874
1140
3.618780
GACTGGGTCAGGCTGCAGG
62.619
68.421
17.12
0.00
36.41
4.85
875
1141
2.046507
GACTGGGTCAGGCTGCAG
60.047
66.667
10.11
10.11
36.41
4.41
876
1142
3.640407
GGACTGGGTCAGGCTGCA
61.640
66.667
10.34
0.94
39.87
4.41
877
1143
4.416738
GGGACTGGGTCAGGCTGC
62.417
72.222
10.34
4.94
39.87
5.25
878
1144
3.721706
GGGGACTGGGTCAGGCTG
61.722
72.222
8.58
8.58
39.87
4.85
879
1145
4.270153
TGGGGACTGGGTCAGGCT
62.270
66.667
0.50
0.00
39.87
4.58
880
1146
4.035102
GTGGGGACTGGGTCAGGC
62.035
72.222
0.00
0.00
39.10
4.85
881
1147
2.203998
AGTGGGGACTGGGTCAGG
60.204
66.667
0.00
0.00
35.51
3.86
882
1148
2.294078
GGAGTGGGGACTGGGTCAG
61.294
68.421
0.14
0.00
37.52
3.51
883
1149
2.203938
GGAGTGGGGACTGGGTCA
60.204
66.667
0.14
0.00
33.68
4.02
884
1150
3.391382
CGGAGTGGGGACTGGGTC
61.391
72.222
0.00
0.00
0.00
4.46
906
1172
1.050988
GGAGTGCCTATGGAGCTGGA
61.051
60.000
0.00
0.00
0.00
3.86
1001
1311
4.881440
GCTCATCCATGCCGGCCA
62.881
66.667
26.77
12.96
33.14
5.36
1228
1606
0.308376
GGAGACAGATCCGCGTACTC
59.692
60.000
4.92
0.00
0.00
2.59
1347
1731
0.672889
TGCGGATGCTTGCAAGAAAA
59.327
45.000
30.39
14.46
43.34
2.29
1378
1768
3.270027
CCATGTAGCGAGATGTTCCAAA
58.730
45.455
3.35
0.00
0.00
3.28
1379
1769
2.236146
ACCATGTAGCGAGATGTTCCAA
59.764
45.455
3.35
0.00
0.00
3.53
1415
1805
0.725686
CAGCACAGCATACTCACTGC
59.274
55.000
0.00
0.00
37.42
4.40
1548
1951
0.675208
TGAAATGTATGCCGCCGTGT
60.675
50.000
0.00
0.00
0.00
4.49
1552
1955
1.032014
ACCATGAAATGTATGCCGCC
58.968
50.000
0.00
0.00
44.81
6.13
1554
1957
3.128415
TCACAACCATGAAATGTATGCCG
59.872
43.478
0.00
0.00
44.81
5.69
1602
2008
4.418328
GCCACCCATGCACCGGTA
62.418
66.667
6.87
0.00
0.00
4.02
1773
6164
3.778075
TCCCAATGAAATCCGAGGAACTA
59.222
43.478
0.00
0.00
41.55
2.24
1784
6175
3.094572
CCAGCAGACTTCCCAATGAAAT
58.905
45.455
0.00
0.00
31.06
2.17
1815
6206
3.442977
AGCGGTATCGGGAGTTGATATAC
59.557
47.826
0.00
0.00
36.79
1.47
1834
6237
1.135257
AGTCAAAGATCGGTCTGAGCG
60.135
52.381
22.05
22.05
38.28
5.03
1857
6260
4.927425
TCATCACTAAGAGCGTAAACCAAC
59.073
41.667
0.00
0.00
0.00
3.77
1877
6280
7.577303
ACACACATCCCAGTTATAAATCTCAT
58.423
34.615
0.00
0.00
0.00
2.90
1913
6325
1.798283
TTTCCAGTGCATGCATTTGC
58.202
45.000
25.64
11.03
43.07
3.68
1968
6383
8.208224
TGTACTCCAATGACTTTGAGAAACTTA
58.792
33.333
2.74
0.00
37.53
2.24
2036
6472
3.006940
TCCAAATCGTATGCCAACAGTC
58.993
45.455
0.00
0.00
0.00
3.51
2102
6542
6.563222
ATGGGAAAAATTGCACAAATTCAG
57.437
33.333
0.00
0.00
37.51
3.02
2136
6579
1.922447
TCCAATGGTAGGCAGGACAAT
59.078
47.619
0.00
0.00
0.00
2.71
2261
6747
8.784043
ACTAAAGGTAGCATTTTCTACAAACAG
58.216
33.333
0.00
0.00
40.42
3.16
2355
6845
7.093289
ACAGAGCATACTACAACTTGGACTAAT
60.093
37.037
0.00
0.00
0.00
1.73
2414
6909
0.322187
AGGTACACACGGAAATGGGC
60.322
55.000
0.00
0.00
0.00
5.36
2415
6910
1.271163
ACAGGTACACACGGAAATGGG
60.271
52.381
0.00
0.00
0.00
4.00
2416
6911
2.178912
ACAGGTACACACGGAAATGG
57.821
50.000
0.00
0.00
0.00
3.16
2563
7163
6.694877
ACACACTAAAGCGTCTCATATAGA
57.305
37.500
0.00
0.00
0.00
1.98
2602
7217
7.119846
GCTTAGACAGTCAGGTAAAACATCAAT
59.880
37.037
2.66
0.00
0.00
2.57
2854
8164
8.792830
AAGCAGCTGTACTTTCAATTTAGATA
57.207
30.769
16.64
0.00
0.00
1.98
2918
8228
7.040686
ACCAACACTGTTGTTAAATAGATGGTC
60.041
37.037
18.53
0.00
44.57
4.02
2999
8374
2.237392
ACAAGGAAGACATGGGCTAGAC
59.763
50.000
0.00
0.00
0.00
2.59
3001
8376
3.452627
AGTACAAGGAAGACATGGGCTAG
59.547
47.826
0.00
0.00
0.00
3.42
3003
8378
2.237392
GAGTACAAGGAAGACATGGGCT
59.763
50.000
0.00
0.00
0.00
5.19
3005
8380
3.261897
AGTGAGTACAAGGAAGACATGGG
59.738
47.826
0.00
0.00
0.00
4.00
3013
8388
4.408276
ACTAGAGCAGTGAGTACAAGGAA
58.592
43.478
0.00
0.00
35.62
3.36
3015
8390
4.792521
AACTAGAGCAGTGAGTACAAGG
57.207
45.455
0.00
0.00
37.63
3.61
3016
8391
6.926272
AGAAAAACTAGAGCAGTGAGTACAAG
59.074
38.462
0.00
0.00
37.63
3.16
3031
8406
5.888161
AGGATGCCACCAATAGAAAAACTAG
59.112
40.000
0.00
0.00
34.35
2.57
3045
8444
3.005155
GCAAGAAATATCAGGATGCCACC
59.995
47.826
0.00
0.00
34.76
4.61
3137
10511
2.916640
CAATCTCTCCAGGAAAGAGGC
58.083
52.381
0.00
0.00
40.58
4.70
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.