Multiple sequence alignment - TraesCS7B01G390000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G390000 chr7B 100.000 4832 0 0 1 4832 656506514 656511345 0.000000e+00 8924.0
1 TraesCS7B01G390000 chr7B 78.810 689 127 11 8 680 166965100 166964415 3.430000e-121 446.0
2 TraesCS7B01G390000 chr7B 74.791 599 103 28 105 675 739543501 739544079 4.870000e-55 226.0
3 TraesCS7B01G390000 chr7B 94.545 55 3 0 3545 3599 589665305 589665251 8.620000e-13 86.1
4 TraesCS7B01G390000 chr7D 92.048 2754 150 32 829 3545 586484686 586487407 0.000000e+00 3808.0
5 TraesCS7B01G390000 chr7D 85.774 1188 76 40 3598 4735 586487412 586488556 0.000000e+00 1171.0
6 TraesCS7B01G390000 chr7D 94.545 55 2 1 3545 3599 580970148 580970201 3.100000e-12 84.2
7 TraesCS7B01G390000 chr7D 91.667 60 4 1 3541 3599 78414189 78414130 1.110000e-11 82.4
8 TraesCS7B01G390000 chr7A 90.546 1978 121 23 812 2759 677694307 677696248 0.000000e+00 2556.0
9 TraesCS7B01G390000 chr7A 87.977 1023 49 31 3598 4594 677697172 677698146 0.000000e+00 1140.0
10 TraesCS7B01G390000 chr7A 84.177 158 16 4 2758 2906 677696408 677696565 1.400000e-30 145.0
11 TraesCS7B01G390000 chr7A 84.298 121 19 0 4440 4560 507860766 507860646 8.500000e-23 119.0
12 TraesCS7B01G390000 chr2B 88.987 1244 69 28 905 2116 606490383 606489176 0.000000e+00 1476.0
13 TraesCS7B01G390000 chr2B 80.233 688 85 30 4128 4801 606488383 606487733 2.040000e-128 470.0
14 TraesCS7B01G390000 chr2B 94.958 238 10 1 3598 3833 606488618 606488381 5.910000e-99 372.0
15 TraesCS7B01G390000 chr2B 88.356 146 16 1 501 646 134773303 134773447 1.790000e-39 174.0
16 TraesCS7B01G390000 chr3D 87.172 647 52 17 1309 1938 35104151 35104783 0.000000e+00 706.0
17 TraesCS7B01G390000 chr3D 95.122 246 12 0 2107 2352 35104778 35105023 5.860000e-104 388.0
18 TraesCS7B01G390000 chr3D 96.226 53 2 0 3544 3596 475121210 475121262 2.400000e-13 87.9
19 TraesCS7B01G390000 chr3A 90.798 489 26 10 893 1379 655728409 655728880 1.900000e-178 636.0
20 TraesCS7B01G390000 chr3A 85.287 435 28 22 1375 1788 655728981 655729400 2.690000e-112 416.0
21 TraesCS7B01G390000 chr3A 92.053 302 9 3 899 1199 468729143 468728856 1.250000e-110 411.0
22 TraesCS7B01G390000 chr6B 91.246 297 10 6 904 1200 114055390 114055110 1.630000e-104 390.0
23 TraesCS7B01G390000 chr6A 75.581 602 119 18 44 642 613257708 613258284 6.160000e-69 272.0
24 TraesCS7B01G390000 chr6A 75.836 269 51 13 4443 4701 555438182 555437918 1.830000e-24 124.0
25 TraesCS7B01G390000 chr4B 83.077 260 28 12 470 714 527012479 527012737 6.290000e-54 222.0
26 TraesCS7B01G390000 chr2D 80.667 300 42 8 394 680 83097219 83097515 8.140000e-53 219.0
27 TraesCS7B01G390000 chr6D 83.256 215 29 6 470 679 29837958 29838170 1.780000e-44 191.0
28 TraesCS7B01G390000 chr6D 80.315 254 37 8 437 679 29774953 29775204 3.840000e-41 180.0
29 TraesCS7B01G390000 chr5A 78.247 308 53 6 386 680 364574062 364573756 8.260000e-43 185.0
30 TraesCS7B01G390000 chr5A 83.871 124 19 1 4438 4560 675628306 675628429 3.060000e-22 117.0
31 TraesCS7B01G390000 chr1B 80.402 199 36 3 4441 4638 673550670 673550866 1.080000e-31 148.0
32 TraesCS7B01G390000 chr1B 73.950 357 52 24 33 388 558509072 558508756 6.610000e-19 106.0
33 TraesCS7B01G390000 chr1A 76.404 267 49 11 4445 4701 588675590 588675328 1.090000e-26 132.0
34 TraesCS7B01G390000 chr1A 82.906 117 18 2 4445 4560 480600915 480601030 2.380000e-18 104.0
35 TraesCS7B01G390000 chr4A 85.124 121 18 0 4440 4560 628154685 628154565 1.830000e-24 124.0
36 TraesCS7B01G390000 chr4D 94.643 56 3 0 3544 3599 472485125 472485070 2.400000e-13 87.9
37 TraesCS7B01G390000 chr5D 96.154 52 2 0 3545 3596 460657077 460657128 8.620000e-13 86.1
38 TraesCS7B01G390000 chr5D 94.340 53 3 0 3544 3596 337582978 337583030 1.110000e-11 82.4
39 TraesCS7B01G390000 chr3B 94.545 55 3 0 3543 3597 24541855 24541801 8.620000e-13 86.1
40 TraesCS7B01G390000 chr5B 92.982 57 2 2 3544 3599 494297114 494297059 1.110000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G390000 chr7B 656506514 656511345 4831 False 8924.000000 8924 100.000000 1 4832 1 chr7B.!!$F1 4831
1 TraesCS7B01G390000 chr7B 166964415 166965100 685 True 446.000000 446 78.810000 8 680 1 chr7B.!!$R1 672
2 TraesCS7B01G390000 chr7B 739543501 739544079 578 False 226.000000 226 74.791000 105 675 1 chr7B.!!$F2 570
3 TraesCS7B01G390000 chr7D 586484686 586488556 3870 False 2489.500000 3808 88.911000 829 4735 2 chr7D.!!$F2 3906
4 TraesCS7B01G390000 chr7A 677694307 677698146 3839 False 1280.333333 2556 87.566667 812 4594 3 chr7A.!!$F1 3782
5 TraesCS7B01G390000 chr2B 606487733 606490383 2650 True 772.666667 1476 88.059333 905 4801 3 chr2B.!!$R1 3896
6 TraesCS7B01G390000 chr3D 35104151 35105023 872 False 547.000000 706 91.147000 1309 2352 2 chr3D.!!$F2 1043
7 TraesCS7B01G390000 chr3A 655728409 655729400 991 False 526.000000 636 88.042500 893 1788 2 chr3A.!!$F1 895
8 TraesCS7B01G390000 chr6A 613257708 613258284 576 False 272.000000 272 75.581000 44 642 1 chr6A.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.036164 CCTCCATTGGTCCGTTGACA 59.964 55.0 1.86 0.00 43.65 3.58 F
571 622 0.107643 GGATAAGGAGGAGCTGGTGC 59.892 60.0 0.00 0.00 40.05 5.01 F
572 623 0.107643 GATAAGGAGGAGCTGGTGCC 59.892 60.0 0.00 0.00 40.80 5.01 F
627 678 0.109873 ACGTCGTGGACATCTTCGAC 60.110 55.0 0.00 14.44 45.70 4.20 F
793 844 0.259938 GAGGGTGGGATTTGGATGCT 59.740 55.0 0.00 0.00 0.00 3.79 F
1291 1360 0.394216 CCCTTGTGGCCGATCAATGA 60.394 55.0 0.00 0.00 0.00 2.57 F
1835 2053 0.744281 CCCCACGTTATGCCCATTTC 59.256 55.0 0.00 0.00 0.00 2.17 F
3101 3522 0.035317 TACCCAGAGTTGCTGTGCAG 59.965 55.0 0.00 0.00 43.33 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1214 1282 0.741915 GCAGAGAAGAGTACGAGGGG 59.258 60.000 0.00 0.00 0.00 4.79 R
1860 2083 1.002468 CAGCACACAGGTACAAAGCAC 60.002 52.381 0.00 0.00 0.00 4.40 R
2296 2522 3.438087 AGTATCTGCTGCACAATGTTGAC 59.562 43.478 0.00 0.00 0.00 3.18 R
2576 2819 8.401490 AGCCTATTTCCATCATAATTGTCTTC 57.599 34.615 0.00 0.00 0.00 2.87 R
2627 2870 6.413892 TCTAGTATGTCATGCATTTGTGGAA 58.586 36.000 0.00 0.00 38.94 3.53 R
3037 3454 0.032912 ATGAACATGCATGGGGCTCA 60.033 50.000 29.41 23.35 45.15 4.26 R
3552 4132 0.671781 CTTGCCAACTGAGCTACGCT 60.672 55.000 0.00 0.00 43.88 5.07 R
4600 5226 0.036306 GACTGGATGGTCAACGGGTT 59.964 55.000 0.00 0.00 36.35 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.910580 CTAACGCCCTGGTCCCACAT 61.911 60.000 0.00 0.00 0.00 3.21
35 36 3.716195 CGCCCTGGTCCCACATGA 61.716 66.667 0.00 0.00 0.00 3.07
43 44 2.958355 CTGGTCCCACATGAAAACACTT 59.042 45.455 0.00 0.00 0.00 3.16
49 50 6.048509 GTCCCACATGAAAACACTTTGAAAT 58.951 36.000 0.00 0.00 0.00 2.17
52 53 6.047870 CCACATGAAAACACTTTGAAATCCA 58.952 36.000 0.00 0.00 0.00 3.41
60 61 1.202879 ACTTTGAAATCCAGCGGTCCA 60.203 47.619 0.00 0.00 0.00 4.02
66 67 1.995376 AATCCAGCGGTCCAAAACTT 58.005 45.000 0.00 0.00 0.00 2.66
76 77 2.158667 GGTCCAAAACTTGTCTCCTCCA 60.159 50.000 0.00 0.00 0.00 3.86
81 82 3.884037 AAACTTGTCTCCTCCATTGGT 57.116 42.857 1.86 0.00 0.00 3.67
85 86 0.544357 TGTCTCCTCCATTGGTCCGT 60.544 55.000 1.86 0.00 0.00 4.69
90 91 0.036164 CCTCCATTGGTCCGTTGACA 59.964 55.000 1.86 0.00 43.65 3.58
92 93 0.762418 TCCATTGGTCCGTTGACACT 59.238 50.000 1.86 0.00 43.65 3.55
95 96 0.179032 ATTGGTCCGTTGACACTGCA 60.179 50.000 0.00 0.00 43.65 4.41
103 104 4.639906 TGACACTGCATGGCGCCA 62.640 61.111 34.80 34.80 40.51 5.69
134 135 2.731571 GCATGGTGTCCTAGCCCGA 61.732 63.158 0.00 0.00 0.00 5.14
146 147 2.367567 CCTAGCCCGACTATTTAAGCCA 59.632 50.000 0.00 0.00 0.00 4.75
193 194 2.001269 ACATTTCCTCCCCTCCCGG 61.001 63.158 0.00 0.00 0.00 5.73
220 223 1.598130 GCTGCCACTTTCCACTCGT 60.598 57.895 0.00 0.00 0.00 4.18
222 225 0.249868 CTGCCACTTTCCACTCGTCA 60.250 55.000 0.00 0.00 0.00 4.35
226 229 0.249868 CACTTTCCACTCGTCAGCCA 60.250 55.000 0.00 0.00 0.00 4.75
247 250 2.577593 GCCGTCCTCCACCACTAC 59.422 66.667 0.00 0.00 0.00 2.73
282 285 1.038280 GCCGCTAGGTAAGGAGCTAA 58.962 55.000 0.00 0.00 40.50 3.09
283 286 1.411612 GCCGCTAGGTAAGGAGCTAAA 59.588 52.381 0.00 0.00 40.50 1.85
294 297 7.964624 AGGTAAGGAGCTAAACATATCTAACC 58.035 38.462 0.00 0.00 0.00 2.85
301 304 7.014808 GGAGCTAAACATATCTAACCTCAGAGT 59.985 40.741 0.00 0.00 0.00 3.24
304 307 5.939764 AACATATCTAACCTCAGAGTGCA 57.060 39.130 0.00 0.00 0.00 4.57
305 308 5.939764 ACATATCTAACCTCAGAGTGCAA 57.060 39.130 0.00 0.00 0.00 4.08
306 309 6.299805 ACATATCTAACCTCAGAGTGCAAA 57.700 37.500 0.00 0.00 0.00 3.68
333 336 0.323725 TCCTTGAGCAGATTTGGGCC 60.324 55.000 0.00 0.00 0.00 5.80
355 358 3.390521 ACGAAGCCCAGATCGCCA 61.391 61.111 0.00 0.00 42.61 5.69
356 359 2.109799 CGAAGCCCAGATCGCCAT 59.890 61.111 0.00 0.00 31.71 4.40
376 379 3.044305 GGCTACATCCGGATGCGC 61.044 66.667 38.44 36.05 42.39 6.09
382 385 0.464373 ACATCCGGATGCGCTTGATT 60.464 50.000 38.44 17.97 42.39 2.57
384 387 0.179048 ATCCGGATGCGCTTGATTCA 60.179 50.000 18.33 0.00 0.00 2.57
394 400 2.468831 CGCTTGATTCAGAGGAGTAGC 58.531 52.381 0.00 0.00 0.00 3.58
405 411 0.260523 AGGAGTAGCAGGAGGAGGAC 59.739 60.000 0.00 0.00 0.00 3.85
441 483 2.812499 GCAGATCTACGGGCGGAA 59.188 61.111 0.00 0.00 0.00 4.30
448 490 1.180456 TCTACGGGCGGAACAACAGA 61.180 55.000 0.00 0.00 0.00 3.41
462 504 4.543590 ACAACAGACAATCCTCGATTCT 57.456 40.909 0.00 0.00 28.87 2.40
468 510 2.359531 GACAATCCTCGATTCTCTCCGT 59.640 50.000 0.00 0.00 28.87 4.69
545 593 3.102985 CGTCGAGGAGATGCTCGT 58.897 61.111 20.75 3.25 42.87 4.18
556 604 5.510430 AGGAGATGCTCGTGTATATGGATA 58.490 41.667 0.00 0.00 0.00 2.59
566 617 4.707448 CGTGTATATGGATAAGGAGGAGCT 59.293 45.833 0.00 0.00 0.00 4.09
567 618 5.393569 CGTGTATATGGATAAGGAGGAGCTG 60.394 48.000 0.00 0.00 0.00 4.24
568 619 5.026121 TGTATATGGATAAGGAGGAGCTGG 58.974 45.833 0.00 0.00 0.00 4.85
569 620 2.503869 ATGGATAAGGAGGAGCTGGT 57.496 50.000 0.00 0.00 0.00 4.00
570 621 1.500474 TGGATAAGGAGGAGCTGGTG 58.500 55.000 0.00 0.00 0.00 4.17
571 622 0.107643 GGATAAGGAGGAGCTGGTGC 59.892 60.000 0.00 0.00 40.05 5.01
572 623 0.107643 GATAAGGAGGAGCTGGTGCC 59.892 60.000 0.00 0.00 40.80 5.01
573 624 1.348775 ATAAGGAGGAGCTGGTGCCC 61.349 60.000 0.00 0.00 40.80 5.36
574 625 2.477190 TAAGGAGGAGCTGGTGCCCT 62.477 60.000 0.00 0.00 40.76 5.19
575 626 3.791586 GGAGGAGCTGGTGCCCTC 61.792 72.222 9.44 9.44 46.54 4.30
576 627 3.791586 GAGGAGCTGGTGCCCTCC 61.792 72.222 7.08 5.67 44.06 4.30
578 629 2.365635 GGAGCTGGTGCCCTCCTA 60.366 66.667 0.00 0.00 43.42 2.94
579 630 2.736826 GGAGCTGGTGCCCTCCTAC 61.737 68.421 0.00 0.00 43.42 3.18
580 631 3.077556 AGCTGGTGCCCTCCTACG 61.078 66.667 0.00 0.00 40.80 3.51
581 632 4.840005 GCTGGTGCCCTCCTACGC 62.840 72.222 0.00 0.00 0.00 4.42
582 633 4.514577 CTGGTGCCCTCCTACGCG 62.515 72.222 3.53 3.53 0.00 6.01
588 639 4.301027 CCCTCCTACGCGCCCATC 62.301 72.222 5.73 0.00 0.00 3.51
589 640 3.227276 CCTCCTACGCGCCCATCT 61.227 66.667 5.73 0.00 0.00 2.90
590 641 1.901948 CCTCCTACGCGCCCATCTA 60.902 63.158 5.73 0.00 0.00 1.98
591 642 1.286260 CTCCTACGCGCCCATCTAC 59.714 63.158 5.73 0.00 0.00 2.59
592 643 2.143594 CTCCTACGCGCCCATCTACC 62.144 65.000 5.73 0.00 0.00 3.18
593 644 2.338984 CTACGCGCCCATCTACCC 59.661 66.667 5.73 0.00 0.00 3.69
594 645 3.553437 CTACGCGCCCATCTACCCG 62.553 68.421 5.73 0.00 0.00 5.28
622 673 2.875485 CGGACGTCGTGGACATCT 59.125 61.111 9.92 0.00 32.09 2.90
623 674 1.211969 CGGACGTCGTGGACATCTT 59.788 57.895 9.92 0.00 32.09 2.40
624 675 0.797249 CGGACGTCGTGGACATCTTC 60.797 60.000 9.92 0.00 32.09 2.87
625 676 0.797249 GGACGTCGTGGACATCTTCG 60.797 60.000 9.92 0.00 32.09 3.79
626 677 0.167470 GACGTCGTGGACATCTTCGA 59.833 55.000 0.63 0.00 32.09 3.71
627 678 0.109873 ACGTCGTGGACATCTTCGAC 60.110 55.000 0.00 14.44 45.70 4.20
631 682 2.638329 GTGGACATCTTCGACGACG 58.362 57.895 0.00 0.00 41.26 5.12
648 699 1.263356 ACGAAGTGTAGCTTAGGCCA 58.737 50.000 5.01 0.00 42.51 5.36
649 700 1.621814 ACGAAGTGTAGCTTAGGCCAA 59.378 47.619 5.01 0.00 42.51 4.52
650 701 2.000447 CGAAGTGTAGCTTAGGCCAAC 59.000 52.381 5.01 0.00 37.59 3.77
651 702 2.000447 GAAGTGTAGCTTAGGCCAACG 59.000 52.381 5.01 0.00 37.59 4.10
652 703 0.974383 AGTGTAGCTTAGGCCAACGT 59.026 50.000 5.01 0.00 39.73 3.99
653 704 1.076332 GTGTAGCTTAGGCCAACGTG 58.924 55.000 5.01 0.00 39.73 4.49
654 705 0.970640 TGTAGCTTAGGCCAACGTGA 59.029 50.000 5.01 0.00 39.73 4.35
655 706 1.553248 TGTAGCTTAGGCCAACGTGAT 59.447 47.619 5.01 0.00 39.73 3.06
656 707 2.027561 TGTAGCTTAGGCCAACGTGATT 60.028 45.455 5.01 0.00 39.73 2.57
657 708 2.200373 AGCTTAGGCCAACGTGATTT 57.800 45.000 5.01 0.00 39.73 2.17
658 709 2.084546 AGCTTAGGCCAACGTGATTTC 58.915 47.619 5.01 0.00 39.73 2.17
659 710 1.810151 GCTTAGGCCAACGTGATTTCA 59.190 47.619 5.01 0.00 0.00 2.69
660 711 2.423538 GCTTAGGCCAACGTGATTTCAT 59.576 45.455 5.01 0.00 0.00 2.57
661 712 3.625764 GCTTAGGCCAACGTGATTTCATA 59.374 43.478 5.01 0.00 0.00 2.15
662 713 4.260784 GCTTAGGCCAACGTGATTTCATAG 60.261 45.833 5.01 0.00 0.00 2.23
663 714 3.350219 AGGCCAACGTGATTTCATAGT 57.650 42.857 5.01 0.00 0.00 2.12
664 715 4.481368 AGGCCAACGTGATTTCATAGTA 57.519 40.909 5.01 0.00 0.00 1.82
665 716 4.442706 AGGCCAACGTGATTTCATAGTAG 58.557 43.478 5.01 0.00 0.00 2.57
666 717 3.560068 GGCCAACGTGATTTCATAGTAGG 59.440 47.826 0.00 0.00 0.00 3.18
667 718 4.189231 GCCAACGTGATTTCATAGTAGGT 58.811 43.478 0.00 0.00 0.00 3.08
668 719 5.353938 GCCAACGTGATTTCATAGTAGGTA 58.646 41.667 0.00 0.00 0.00 3.08
669 720 5.462398 GCCAACGTGATTTCATAGTAGGTAG 59.538 44.000 0.00 0.00 0.00 3.18
670 721 5.983720 CCAACGTGATTTCATAGTAGGTAGG 59.016 44.000 0.00 0.00 0.00 3.18
671 722 6.183360 CCAACGTGATTTCATAGTAGGTAGGA 60.183 42.308 0.00 0.00 0.00 2.94
672 723 7.434492 CAACGTGATTTCATAGTAGGTAGGAT 58.566 38.462 0.00 0.00 0.00 3.24
673 724 7.598759 ACGTGATTTCATAGTAGGTAGGATT 57.401 36.000 0.00 0.00 0.00 3.01
674 725 8.019656 ACGTGATTTCATAGTAGGTAGGATTT 57.980 34.615 0.00 0.00 0.00 2.17
675 726 8.483758 ACGTGATTTCATAGTAGGTAGGATTTT 58.516 33.333 0.00 0.00 0.00 1.82
676 727 9.326413 CGTGATTTCATAGTAGGTAGGATTTTT 57.674 33.333 0.00 0.00 0.00 1.94
707 758 9.941325 TTTTTGCATGGTTTGTAAATATGAGAT 57.059 25.926 0.00 0.00 39.28 2.75
710 761 8.165239 TGCATGGTTTGTAAATATGAGATACC 57.835 34.615 0.00 0.00 0.00 2.73
711 762 7.777440 TGCATGGTTTGTAAATATGAGATACCA 59.223 33.333 0.00 0.00 37.53 3.25
712 763 8.796475 GCATGGTTTGTAAATATGAGATACCAT 58.204 33.333 0.00 0.00 42.79 3.55
739 790 9.911788 AATGTCAATTATAAGATCTTGACCTGT 57.088 29.630 18.47 8.95 44.26 4.00
740 791 8.948631 TGTCAATTATAAGATCTTGACCTGTC 57.051 34.615 18.47 7.27 44.26 3.51
741 792 8.539544 TGTCAATTATAAGATCTTGACCTGTCA 58.460 33.333 18.47 9.42 44.26 3.58
742 793 9.039870 GTCAATTATAAGATCTTGACCTGTCAG 57.960 37.037 18.47 0.00 40.87 3.51
743 794 8.762645 TCAATTATAAGATCTTGACCTGTCAGT 58.237 33.333 18.47 0.00 41.13 3.41
744 795 8.824781 CAATTATAAGATCTTGACCTGTCAGTG 58.175 37.037 18.47 0.00 41.13 3.66
745 796 7.482169 TTATAAGATCTTGACCTGTCAGTGT 57.518 36.000 18.47 0.00 41.13 3.55
746 797 3.951775 AGATCTTGACCTGTCAGTGTC 57.048 47.619 12.17 12.17 41.13 3.67
747 798 2.564947 AGATCTTGACCTGTCAGTGTCC 59.435 50.000 14.96 4.03 41.13 4.02
748 799 1.788229 TCTTGACCTGTCAGTGTCCA 58.212 50.000 14.96 6.91 41.13 4.02
749 800 1.412710 TCTTGACCTGTCAGTGTCCAC 59.587 52.381 14.96 0.00 41.13 4.02
750 801 1.414181 CTTGACCTGTCAGTGTCCACT 59.586 52.381 14.96 0.00 43.61 4.00
751 802 2.375014 TGACCTGTCAGTGTCCACTA 57.625 50.000 14.96 0.00 40.20 2.74
752 803 2.673258 TGACCTGTCAGTGTCCACTAA 58.327 47.619 14.96 0.00 40.20 2.24
753 804 2.628178 TGACCTGTCAGTGTCCACTAAG 59.372 50.000 14.96 0.00 40.20 2.18
754 805 1.971357 ACCTGTCAGTGTCCACTAAGG 59.029 52.381 15.92 15.92 40.20 2.69
755 806 1.338200 CCTGTCAGTGTCCACTAAGGC 60.338 57.143 0.00 0.00 40.20 4.35
756 807 0.317160 TGTCAGTGTCCACTAAGGCG 59.683 55.000 0.00 0.00 40.20 5.52
757 808 1.014564 GTCAGTGTCCACTAAGGCGC 61.015 60.000 0.00 0.00 40.20 6.53
758 809 1.005037 CAGTGTCCACTAAGGCGCA 60.005 57.895 10.83 0.00 40.20 6.09
759 810 1.016130 CAGTGTCCACTAAGGCGCAG 61.016 60.000 10.83 0.00 40.20 5.18
760 811 1.004918 GTGTCCACTAAGGCGCAGT 60.005 57.895 10.83 0.09 37.29 4.40
761 812 1.014564 GTGTCCACTAAGGCGCAGTC 61.015 60.000 10.83 0.00 37.29 3.51
762 813 1.805945 GTCCACTAAGGCGCAGTCG 60.806 63.158 10.83 0.00 36.95 4.18
780 831 4.873129 CATCCGCGGTCGAGGGTG 62.873 72.222 27.15 11.58 39.65 4.61
785 836 3.782443 GCGGTCGAGGGTGGGATT 61.782 66.667 0.00 0.00 0.00 3.01
786 837 2.987125 CGGTCGAGGGTGGGATTT 59.013 61.111 0.00 0.00 0.00 2.17
787 838 1.449601 CGGTCGAGGGTGGGATTTG 60.450 63.158 0.00 0.00 0.00 2.32
788 839 1.077716 GGTCGAGGGTGGGATTTGG 60.078 63.158 0.00 0.00 0.00 3.28
789 840 1.559065 GGTCGAGGGTGGGATTTGGA 61.559 60.000 0.00 0.00 0.00 3.53
790 841 0.546598 GTCGAGGGTGGGATTTGGAT 59.453 55.000 0.00 0.00 0.00 3.41
791 842 0.546122 TCGAGGGTGGGATTTGGATG 59.454 55.000 0.00 0.00 0.00 3.51
792 843 1.103398 CGAGGGTGGGATTTGGATGC 61.103 60.000 0.00 0.00 0.00 3.91
793 844 0.259938 GAGGGTGGGATTTGGATGCT 59.740 55.000 0.00 0.00 0.00 3.79
794 845 0.712380 AGGGTGGGATTTGGATGCTT 59.288 50.000 0.00 0.00 0.00 3.91
795 846 1.079323 AGGGTGGGATTTGGATGCTTT 59.921 47.619 0.00 0.00 0.00 3.51
796 847 1.908619 GGGTGGGATTTGGATGCTTTT 59.091 47.619 0.00 0.00 0.00 2.27
797 848 3.103742 GGGTGGGATTTGGATGCTTTTA 58.896 45.455 0.00 0.00 0.00 1.52
798 849 3.118775 GGGTGGGATTTGGATGCTTTTAC 60.119 47.826 0.00 0.00 0.00 2.01
799 850 3.118775 GGTGGGATTTGGATGCTTTTACC 60.119 47.826 0.00 0.00 0.00 2.85
800 851 3.103742 TGGGATTTGGATGCTTTTACCC 58.896 45.455 0.00 0.00 35.82 3.69
801 852 3.103742 GGGATTTGGATGCTTTTACCCA 58.896 45.455 0.00 0.00 35.41 4.51
802 853 3.711190 GGGATTTGGATGCTTTTACCCAT 59.289 43.478 0.00 0.00 35.41 4.00
803 854 4.898861 GGGATTTGGATGCTTTTACCCATA 59.101 41.667 0.00 0.00 35.41 2.74
804 855 5.011023 GGGATTTGGATGCTTTTACCCATAG 59.989 44.000 0.00 0.00 35.41 2.23
805 856 5.011023 GGATTTGGATGCTTTTACCCATAGG 59.989 44.000 0.00 0.00 40.04 2.57
806 857 2.944129 TGGATGCTTTTACCCATAGGC 58.056 47.619 0.00 0.00 36.11 3.93
807 858 2.239400 GGATGCTTTTACCCATAGGCC 58.761 52.381 0.00 0.00 36.11 5.19
808 859 2.424234 GGATGCTTTTACCCATAGGCCA 60.424 50.000 5.01 0.00 36.11 5.36
809 860 3.500343 GATGCTTTTACCCATAGGCCAT 58.500 45.455 5.01 0.00 36.11 4.40
810 861 4.508405 GGATGCTTTTACCCATAGGCCATA 60.508 45.833 5.01 0.00 36.11 2.74
830 881 2.230660 AGCCTAACCAAAGTTGCAGTC 58.769 47.619 0.00 0.00 36.68 3.51
1233 1301 0.741915 CCCCTCGTACTCTTCTCTGC 59.258 60.000 0.00 0.00 0.00 4.26
1288 1357 1.002624 GACCCTTGTGGCCGATCAA 60.003 57.895 0.00 2.84 37.83 2.57
1291 1360 0.394216 CCCTTGTGGCCGATCAATGA 60.394 55.000 0.00 0.00 0.00 2.57
1341 1410 2.345641 CAGTGTAGAATTTCTGCCGTCG 59.654 50.000 9.22 0.00 0.00 5.12
1374 1443 3.270027 TGTTGGAGCCATGATACTTTCG 58.730 45.455 0.00 0.00 0.00 3.46
1442 1628 6.325028 TCCATTTGAACAAAACTGGGACATTA 59.675 34.615 15.39 0.00 33.13 1.90
1484 1670 8.879342 ATTCTTCATATTTGAGTCCGAGTAAG 57.121 34.615 0.00 0.00 32.27 2.34
1485 1671 6.806751 TCTTCATATTTGAGTCCGAGTAAGG 58.193 40.000 0.00 0.00 32.27 2.69
1486 1672 6.605995 TCTTCATATTTGAGTCCGAGTAAGGA 59.394 38.462 0.00 0.00 33.58 3.36
1512 1716 4.123506 GGAGCAGTAAGATTTAGGCACTC 58.876 47.826 0.00 0.00 41.75 3.51
1531 1735 4.507021 CACTCATGACTCATGTATGTGCTC 59.493 45.833 16.96 0.00 41.98 4.26
1540 1744 2.831685 TGTATGTGCTCGTCTTGGTT 57.168 45.000 0.00 0.00 0.00 3.67
1555 1759 5.063944 CGTCTTGGTTAAGAATGGACATCTG 59.936 44.000 0.00 0.00 44.12 2.90
1568 1772 7.606839 AGAATGGACATCTGCACTTGATATATG 59.393 37.037 0.00 0.00 0.00 1.78
1636 1842 6.474630 AGTAGTAGGTCTAGGTATGGAATCG 58.525 44.000 0.00 0.00 0.00 3.34
1683 1889 3.318275 GGGAAAGTGAAAAACTCAGGGTC 59.682 47.826 0.00 0.00 38.56 4.46
1835 2053 0.744281 CCCCACGTTATGCCCATTTC 59.256 55.000 0.00 0.00 0.00 2.17
1841 2061 2.164219 ACGTTATGCCCATTTCTTGCAG 59.836 45.455 0.00 0.00 38.58 4.41
1860 2083 3.794028 GCAGAGTGTTTAGTAGCATCTCG 59.206 47.826 0.00 0.00 0.00 4.04
1877 2100 1.526887 CTCGTGCTTTGTACCTGTGTG 59.473 52.381 0.00 0.00 0.00 3.82
1898 2121 1.674322 GCGTGCCCCTGCTTCTTTA 60.674 57.895 0.00 0.00 38.71 1.85
1900 2123 1.463674 CGTGCCCCTGCTTCTTTAAT 58.536 50.000 0.00 0.00 38.71 1.40
1901 2124 2.639065 CGTGCCCCTGCTTCTTTAATA 58.361 47.619 0.00 0.00 38.71 0.98
1902 2125 3.214328 CGTGCCCCTGCTTCTTTAATAT 58.786 45.455 0.00 0.00 38.71 1.28
1906 2129 5.812127 GTGCCCCTGCTTCTTTAATATTTTG 59.188 40.000 0.00 0.00 38.71 2.44
1907 2130 5.719085 TGCCCCTGCTTCTTTAATATTTTGA 59.281 36.000 0.00 0.00 38.71 2.69
2052 2278 4.734398 AAATTTGCTCAAACCTGTCACA 57.266 36.364 0.00 0.00 32.51 3.58
2055 2281 1.667236 TGCTCAAACCTGTCACAGTG 58.333 50.000 3.56 0.00 0.00 3.66
2245 2471 2.662006 TGATGCTGAAGACTCGAAGG 57.338 50.000 0.00 0.00 0.00 3.46
2296 2522 3.287867 AAGACAGTGCTGAATATGGGG 57.712 47.619 6.17 0.00 0.00 4.96
2501 2727 7.654923 GGTAGGTTATCCTTTCGTACTAAATGG 59.345 40.741 0.00 0.00 42.12 3.16
2551 2777 2.989166 GCTTATGGCTGTTGAAACTTGC 59.011 45.455 0.00 0.00 38.06 4.01
2576 2819 9.358872 GCTTTAATTGATAACCCTTTCTTCTTG 57.641 33.333 0.00 0.00 0.00 3.02
2627 2870 9.914834 TTGGCAAGATTAGTTATATTACACCTT 57.085 29.630 0.00 0.00 0.00 3.50
2646 2889 4.771577 ACCTTTCCACAAATGCATGACATA 59.228 37.500 0.00 0.00 38.34 2.29
2655 2898 7.148188 CCACAAATGCATGACATACTAGAAAGT 60.148 37.037 0.00 0.00 38.34 2.66
2719 2964 3.922171 TGGTTTGGCAAGGTGAAAATT 57.078 38.095 0.00 0.00 0.00 1.82
2836 3244 5.418310 AGGTCATGTCACTGTTTAAAACG 57.582 39.130 0.00 0.00 0.00 3.60
2839 3247 4.896238 GTCATGTCACTGTTTAAAACGTCG 59.104 41.667 0.00 0.00 0.00 5.12
2844 3252 5.978919 TGTCACTGTTTAAAACGTCGTCTAT 59.021 36.000 0.00 0.00 0.00 1.98
2845 3253 6.142798 TGTCACTGTTTAAAACGTCGTCTATC 59.857 38.462 0.00 0.00 0.00 2.08
2918 3335 9.487790 TTGTGGAATTTTCTGTATTGATTTTCC 57.512 29.630 0.00 0.00 0.00 3.13
2929 3346 6.930731 TGTATTGATTTTCCTTAAACTGGGC 58.069 36.000 0.00 0.00 0.00 5.36
2933 3350 5.636123 TGATTTTCCTTAAACTGGGCAGTA 58.364 37.500 0.00 0.00 41.58 2.74
2947 3364 2.399580 GGCAGTAGAAGGTGGGTATCT 58.600 52.381 0.00 0.00 0.00 1.98
2964 3381 7.815068 GTGGGTATCTTACTGCTATATGAGTTG 59.185 40.741 0.00 0.00 0.00 3.16
2971 3388 2.874701 CTGCTATATGAGTTGGTGGTGC 59.125 50.000 0.00 0.00 0.00 5.01
2979 3396 1.956477 GAGTTGGTGGTGCTGACATTT 59.044 47.619 0.00 0.00 0.00 2.32
3000 3417 7.823799 ACATTTTAGGAAAGCCATGTAATTTGG 59.176 33.333 0.00 0.00 36.29 3.28
3061 3478 2.158871 GCCCCATGCATGTTCATCATTT 60.159 45.455 24.58 0.00 40.77 2.32
3101 3522 0.035317 TACCCAGAGTTGCTGTGCAG 59.965 55.000 0.00 0.00 43.33 4.41
3135 3556 0.878416 TGGTTAGCACGCATTGGAAC 59.122 50.000 0.00 0.00 0.00 3.62
3143 3565 2.420022 GCACGCATTGGAACACTATTCT 59.580 45.455 0.00 0.00 39.29 2.40
3197 3619 7.223971 TCGCTATTTAGCCAGTTACTTGTAATG 59.776 37.037 4.08 0.00 46.34 1.90
3225 3648 9.936759 CCATTTCTACTTCTTTCTACTTTCTCT 57.063 33.333 0.00 0.00 0.00 3.10
3252 3752 5.119125 GCTTGTGATTTTGGCAAAGATACAC 59.881 40.000 21.66 21.66 0.00 2.90
3283 3785 3.742882 GCTTCCATGCTTTCCTGAAAAAC 59.257 43.478 0.00 0.00 0.00 2.43
3346 3919 7.138736 GCATGTAACATAGTTTGAAACACTGT 58.861 34.615 11.02 9.83 32.06 3.55
3347 3920 7.113404 GCATGTAACATAGTTTGAAACACTGTG 59.887 37.037 11.02 6.19 38.85 3.66
3375 3948 8.894768 ATCTTCAAAGTTACTACAGATATGGC 57.105 34.615 0.00 0.00 0.00 4.40
3442 4022 1.619704 GGCCCCTAGCTTGAAACCAAT 60.620 52.381 0.00 0.00 43.05 3.16
3452 4032 8.398665 CCTAGCTTGAAACCAATACAAGAATAC 58.601 37.037 0.00 0.00 42.12 1.89
3545 4125 8.428852 TCCTGTTTCATATATTCCTCGAAATGA 58.571 33.333 0.00 0.00 0.00 2.57
3546 4126 8.715998 CCTGTTTCATATATTCCTCGAAATGAG 58.284 37.037 0.00 0.00 44.83 2.90
3555 4135 3.030209 TCGAAATGAGAACGGAGCG 57.970 52.632 0.00 0.00 0.00 5.03
3556 4136 0.242825 TCGAAATGAGAACGGAGCGT 59.757 50.000 0.00 0.00 43.97 5.07
3557 4137 1.469703 TCGAAATGAGAACGGAGCGTA 59.530 47.619 0.00 0.00 39.99 4.42
3558 4138 1.846782 CGAAATGAGAACGGAGCGTAG 59.153 52.381 0.00 0.00 39.99 3.51
3572 4152 2.460330 CGTAGCTCAGTTGGCAAGG 58.540 57.895 0.00 0.00 0.00 3.61
3573 4153 1.639298 CGTAGCTCAGTTGGCAAGGC 61.639 60.000 0.00 3.21 0.00 4.35
3574 4154 1.375908 TAGCTCAGTTGGCAAGGCG 60.376 57.895 0.00 0.00 0.00 5.52
3575 4155 4.410743 GCTCAGTTGGCAAGGCGC 62.411 66.667 0.00 0.00 41.28 6.53
3576 4156 4.093952 CTCAGTTGGCAAGGCGCG 62.094 66.667 0.00 0.00 43.84 6.86
3635 4217 6.753897 GGCAGATAAATAAGCCAAATTTCG 57.246 37.500 0.00 0.00 46.26 3.46
3643 4225 6.827586 AATAAGCCAAATTTCGTTGACCTA 57.172 33.333 0.00 0.00 0.00 3.08
3820 4403 0.257039 ACCCAGGCATCATGAAGGAC 59.743 55.000 0.00 0.00 0.00 3.85
3864 4447 4.083271 CCTCAAAGGAAGTTCCGTTTGATC 60.083 45.833 29.57 6.67 42.75 2.92
3941 4526 3.181516 GCTTTCGGCAGAGAACATAACAG 60.182 47.826 0.00 0.00 41.35 3.16
3955 4540 4.917385 ACATAACAGGAAAGGTATGCACA 58.083 39.130 0.00 0.00 0.00 4.57
3989 4574 1.305201 GTTCTCTTTGCGGGTGACAA 58.695 50.000 0.00 0.00 0.00 3.18
3991 4576 0.468226 TCTCTTTGCGGGTGACAAGT 59.532 50.000 0.00 0.00 0.00 3.16
3996 4582 3.886505 TCTTTGCGGGTGACAAGTAATTT 59.113 39.130 0.00 0.00 0.00 1.82
4033 4619 2.550830 TGTCTGGTCTTGAGCTTTCC 57.449 50.000 0.00 0.00 0.00 3.13
4034 4620 2.050144 TGTCTGGTCTTGAGCTTTCCT 58.950 47.619 0.00 0.00 0.00 3.36
4036 4622 3.259374 TGTCTGGTCTTGAGCTTTCCTAG 59.741 47.826 0.00 0.00 0.00 3.02
4037 4623 3.259625 GTCTGGTCTTGAGCTTTCCTAGT 59.740 47.826 0.00 0.00 0.00 2.57
4038 4624 3.904339 TCTGGTCTTGAGCTTTCCTAGTT 59.096 43.478 0.00 0.00 0.00 2.24
4039 4625 4.021016 TCTGGTCTTGAGCTTTCCTAGTTC 60.021 45.833 0.00 0.00 34.90 3.01
4040 4626 3.646162 TGGTCTTGAGCTTTCCTAGTTCA 59.354 43.478 0.00 0.00 41.66 3.18
4041 4627 3.997681 GGTCTTGAGCTTTCCTAGTTCAC 59.002 47.826 0.00 0.00 42.85 3.18
4042 4628 3.997681 GTCTTGAGCTTTCCTAGTTCACC 59.002 47.826 0.00 0.00 42.85 4.02
4052 4638 8.306761 AGCTTTCCTAGTTCACCATTTTATTTG 58.693 33.333 0.00 0.00 0.00 2.32
4053 4639 8.303876 GCTTTCCTAGTTCACCATTTTATTTGA 58.696 33.333 0.00 0.00 0.00 2.69
4098 4684 6.990341 TCTAACGTTACACATAGCTCTGTA 57.010 37.500 3.29 0.00 0.00 2.74
4099 4685 7.381766 TCTAACGTTACACATAGCTCTGTAA 57.618 36.000 3.29 6.02 31.77 2.41
4100 4686 7.470079 TCTAACGTTACACATAGCTCTGTAAG 58.530 38.462 3.29 0.00 34.32 2.34
4101 4687 5.892160 ACGTTACACATAGCTCTGTAAGA 57.108 39.130 4.19 0.00 43.69 2.10
4162 4753 3.624326 TCTGTTTAGCATGTGTTGTGC 57.376 42.857 0.00 0.00 42.81 4.57
4186 4777 2.030579 TGTCGTTTGTTGCGAAAATCGA 59.969 40.909 6.01 6.01 43.74 3.59
4228 4819 7.523415 AGGAGAAAACCTGGTCAGTATAAAAA 58.477 34.615 0.00 0.00 39.01 1.94
4236 4827 9.462606 AACCTGGTCAGTATAAAAATTTAGGAG 57.537 33.333 0.00 0.00 0.00 3.69
4349 4950 0.179009 GCTGCAGGCAGGATCCATTA 60.179 55.000 21.63 0.00 43.77 1.90
4350 4951 1.751733 GCTGCAGGCAGGATCCATTAA 60.752 52.381 21.63 0.00 43.77 1.40
4351 4952 2.658285 CTGCAGGCAGGATCCATTAAA 58.342 47.619 15.82 0.00 40.17 1.52
4352 4953 3.025978 CTGCAGGCAGGATCCATTAAAA 58.974 45.455 15.82 0.00 40.17 1.52
4353 4954 3.439154 TGCAGGCAGGATCCATTAAAAA 58.561 40.909 15.82 0.00 0.00 1.94
4354 4955 3.195396 TGCAGGCAGGATCCATTAAAAAC 59.805 43.478 15.82 0.00 0.00 2.43
4356 4957 3.443681 CAGGCAGGATCCATTAAAAACGT 59.556 43.478 15.82 0.00 0.00 3.99
4390 5004 2.133281 TGGGACAGATTCATTGCCAG 57.867 50.000 0.00 0.00 0.00 4.85
4391 5005 1.355381 TGGGACAGATTCATTGCCAGT 59.645 47.619 0.00 0.00 0.00 4.00
4392 5006 2.225091 TGGGACAGATTCATTGCCAGTT 60.225 45.455 0.00 0.00 0.00 3.16
4394 5008 2.416431 GGACAGATTCATTGCCAGTTGC 60.416 50.000 0.00 0.00 41.77 4.17
4395 5009 1.547372 ACAGATTCATTGCCAGTTGCC 59.453 47.619 0.00 0.00 40.16 4.52
4397 5011 1.547372 AGATTCATTGCCAGTTGCCAC 59.453 47.619 0.00 0.00 40.16 5.01
4398 5012 1.273048 GATTCATTGCCAGTTGCCACA 59.727 47.619 0.00 0.00 40.16 4.17
4399 5013 0.675083 TTCATTGCCAGTTGCCACAG 59.325 50.000 0.00 0.00 40.16 3.66
4400 5014 1.180456 TCATTGCCAGTTGCCACAGG 61.180 55.000 0.00 0.00 40.16 4.00
4426 5047 5.990120 AAAAGATGAACCTTCAGATTGGG 57.010 39.130 0.00 0.00 41.08 4.12
4438 5059 3.081061 TCAGATTGGGTACAACATGCAC 58.919 45.455 0.00 0.00 39.87 4.57
4490 5111 4.406003 TCAACTCTTGCCCTAGTCTAATCC 59.594 45.833 0.00 0.00 0.00 3.01
4497 5118 5.808366 TGCCCTAGTCTAATCCATAACTG 57.192 43.478 0.00 0.00 0.00 3.16
4515 5136 9.477484 CCATAACTGTCAACTATAATACTGTCC 57.523 37.037 0.00 0.00 0.00 4.02
4545 5166 5.045432 TCAACCCCAAACTCTTATAATCGGT 60.045 40.000 0.00 0.00 0.00 4.69
4560 5185 1.358152 TCGGTCAGGATTCAACCCTT 58.642 50.000 0.00 0.00 0.00 3.95
4600 5226 1.489649 TGACCCAGTTGACCGGTTTTA 59.510 47.619 9.42 0.00 0.00 1.52
4653 5279 7.313951 TGTCCGCAAAAATTTCAAAATTTCT 57.686 28.000 12.48 0.00 45.16 2.52
4658 5284 7.297391 CGCAAAAATTTCAAAATTTCTAGGGG 58.703 34.615 12.48 8.08 45.16 4.79
4659 5285 7.041440 CGCAAAAATTTCAAAATTTCTAGGGGT 60.041 33.333 12.48 0.00 45.16 4.95
4782 5420 9.822185 AAAATAAAAAGTGATGATATTCTGCCC 57.178 29.630 0.00 0.00 0.00 5.36
4784 5422 6.461110 AAAAAGTGATGATATTCTGCCCAG 57.539 37.500 0.00 0.00 0.00 4.45
4789 5427 5.954150 AGTGATGATATTCTGCCCAGTTTTT 59.046 36.000 0.00 0.00 0.00 1.94
4790 5428 6.038356 GTGATGATATTCTGCCCAGTTTTTG 58.962 40.000 0.00 0.00 0.00 2.44
4791 5429 5.716228 TGATGATATTCTGCCCAGTTTTTGT 59.284 36.000 0.00 0.00 0.00 2.83
4792 5430 5.389859 TGATATTCTGCCCAGTTTTTGTG 57.610 39.130 0.00 0.00 0.00 3.33
4794 5432 3.733443 ATTCTGCCCAGTTTTTGTGAC 57.267 42.857 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.006728 TGGGACCAGGGCGTTAGG 61.007 66.667 0.00 0.00 0.00 2.69
16 17 3.256960 ATGTGGGACCAGGGCGTT 61.257 61.111 0.00 0.00 0.00 4.84
19 20 0.541764 TTTTCATGTGGGACCAGGGC 60.542 55.000 0.00 0.00 0.00 5.19
27 28 5.466393 GGATTTCAAAGTGTTTTCATGTGGG 59.534 40.000 0.00 0.00 0.00 4.61
28 29 6.047870 TGGATTTCAAAGTGTTTTCATGTGG 58.952 36.000 0.00 0.00 0.00 4.17
33 34 4.358851 CGCTGGATTTCAAAGTGTTTTCA 58.641 39.130 0.00 0.00 0.00 2.69
35 36 3.132111 ACCGCTGGATTTCAAAGTGTTTT 59.868 39.130 1.50 0.00 0.00 2.43
43 44 1.988293 TTTGGACCGCTGGATTTCAA 58.012 45.000 1.50 0.00 0.00 2.69
49 50 0.106918 ACAAGTTTTGGACCGCTGGA 60.107 50.000 1.50 0.00 34.12 3.86
52 53 1.594331 GAGACAAGTTTTGGACCGCT 58.406 50.000 0.00 0.00 34.12 5.52
60 61 4.145052 GACCAATGGAGGAGACAAGTTTT 58.855 43.478 6.16 0.00 0.00 2.43
66 67 0.544357 ACGGACCAATGGAGGAGACA 60.544 55.000 6.16 0.00 0.00 3.41
76 77 0.179032 TGCAGTGTCAACGGACCAAT 60.179 50.000 0.00 0.00 43.65 3.16
81 82 1.965930 GCCATGCAGTGTCAACGGA 60.966 57.895 0.00 0.00 0.00 4.69
120 121 1.411041 AATAGTCGGGCTAGGACACC 58.589 55.000 0.00 0.00 36.87 4.16
134 135 2.718563 CCGGTGGTTGGCTTAAATAGT 58.281 47.619 0.00 0.00 0.00 2.12
146 147 1.826487 GGTTTCAGTGCCGGTGGTT 60.826 57.895 1.90 0.00 0.00 3.67
158 159 4.380843 AATGTGGACATGTAGGGTTTCA 57.619 40.909 0.00 0.00 36.56 2.69
196 197 2.193536 GGAAAGTGGCAGCAACGGT 61.194 57.895 0.00 0.00 0.00 4.83
199 200 0.312102 GAGTGGAAAGTGGCAGCAAC 59.688 55.000 0.00 0.00 0.00 4.17
200 201 1.165907 CGAGTGGAAAGTGGCAGCAA 61.166 55.000 0.00 0.00 0.00 3.91
201 202 1.597854 CGAGTGGAAAGTGGCAGCA 60.598 57.895 0.00 0.00 0.00 4.41
204 205 0.249868 CTGACGAGTGGAAAGTGGCA 60.250 55.000 0.00 0.00 0.00 4.92
226 229 4.988716 TGGTGGAGGACGGCGAGT 62.989 66.667 16.62 0.00 0.00 4.18
237 240 0.830648 GCATGGCTAGTAGTGGTGGA 59.169 55.000 0.00 0.00 0.00 4.02
247 250 3.204827 GCGTGGTGGCATGGCTAG 61.205 66.667 21.08 8.04 0.00 3.42
268 271 9.086758 GGTTAGATATGTTTAGCTCCTTACCTA 57.913 37.037 0.00 0.00 0.00 3.08
269 272 7.790314 AGGTTAGATATGTTTAGCTCCTTACCT 59.210 37.037 0.00 0.00 0.00 3.08
282 285 5.939764 TGCACTCTGAGGTTAGATATGTT 57.060 39.130 9.85 0.00 0.00 2.71
283 286 5.939764 TTGCACTCTGAGGTTAGATATGT 57.060 39.130 9.85 0.00 0.00 2.29
355 358 2.069776 CATCCGGATGTAGCCCCAT 58.930 57.895 32.39 0.00 34.23 4.00
356 359 2.818169 GCATCCGGATGTAGCCCCA 61.818 63.158 37.88 0.00 40.80 4.96
365 368 0.179048 TGAATCAAGCGCATCCGGAT 60.179 50.000 12.38 12.38 34.32 4.18
376 379 3.703556 TCCTGCTACTCCTCTGAATCAAG 59.296 47.826 0.00 0.00 0.00 3.02
382 385 1.214175 CTCCTCCTGCTACTCCTCTGA 59.786 57.143 0.00 0.00 0.00 3.27
384 387 0.555769 CCTCCTCCTGCTACTCCTCT 59.444 60.000 0.00 0.00 0.00 3.69
394 400 3.077556 CCCCACGTCCTCCTCCTG 61.078 72.222 0.00 0.00 0.00 3.86
416 422 2.184830 CGTAGATCTGCGTCCCCGA 61.185 63.158 23.14 0.00 35.63 5.14
417 423 2.331805 CGTAGATCTGCGTCCCCG 59.668 66.667 23.14 2.49 34.04 5.73
426 468 0.175073 GTTGTTCCGCCCGTAGATCT 59.825 55.000 0.00 0.00 0.00 2.75
432 474 2.280592 GTCTGTTGTTCCGCCCGT 60.281 61.111 0.00 0.00 0.00 5.28
434 476 0.521735 GATTGTCTGTTGTTCCGCCC 59.478 55.000 0.00 0.00 0.00 6.13
441 483 4.221703 AGAGAATCGAGGATTGTCTGTTGT 59.778 41.667 14.82 0.00 46.22 3.32
448 490 2.379972 ACGGAGAGAATCGAGGATTGT 58.620 47.619 0.00 0.00 42.67 2.71
468 510 2.528127 TTGGCCTCCACCTCCGAA 60.528 61.111 3.32 0.00 30.78 4.30
534 582 4.727507 ATCCATATACACGAGCATCTCC 57.272 45.455 0.00 0.00 0.00 3.71
545 593 5.026121 CCAGCTCCTCCTTATCCATATACA 58.974 45.833 0.00 0.00 0.00 2.29
571 622 4.301027 GATGGGCGCGTAGGAGGG 62.301 72.222 8.43 0.00 0.00 4.30
572 623 1.901948 TAGATGGGCGCGTAGGAGG 60.902 63.158 8.43 0.00 0.00 4.30
573 624 1.286260 GTAGATGGGCGCGTAGGAG 59.714 63.158 8.43 0.00 0.00 3.69
574 625 2.198287 GGTAGATGGGCGCGTAGGA 61.198 63.158 8.43 0.00 0.00 2.94
575 626 2.338984 GGTAGATGGGCGCGTAGG 59.661 66.667 8.43 0.00 0.00 3.18
576 627 2.338984 GGGTAGATGGGCGCGTAG 59.661 66.667 8.43 0.00 0.00 3.51
577 628 3.598715 CGGGTAGATGGGCGCGTA 61.599 66.667 8.43 0.00 36.52 4.42
605 656 0.797249 GAAGATGTCCACGACGTCCG 60.797 60.000 10.58 7.90 46.31 4.79
606 657 0.797249 CGAAGATGTCCACGACGTCC 60.797 60.000 10.58 0.00 46.31 4.79
607 658 0.167470 TCGAAGATGTCCACGACGTC 59.833 55.000 5.18 5.18 45.72 4.34
608 659 0.109873 GTCGAAGATGTCCACGACGT 60.110 55.000 0.00 0.00 43.60 4.34
609 660 2.638329 GTCGAAGATGTCCACGACG 58.362 57.895 0.00 0.00 43.60 5.12
610 661 0.167470 TCGTCGAAGATGTCCACGAC 59.833 55.000 14.81 14.81 45.22 4.34
611 662 0.167470 GTCGTCGAAGATGTCCACGA 59.833 55.000 3.90 0.00 45.22 4.35
612 663 1.126421 CGTCGTCGAAGATGTCCACG 61.126 60.000 11.85 3.35 45.22 4.94
613 664 0.167470 TCGTCGTCGAAGATGTCCAC 59.833 55.000 18.17 0.00 45.22 4.02
614 665 2.547026 TCGTCGTCGAAGATGTCCA 58.453 52.632 18.17 0.00 45.22 4.02
623 674 0.870393 AAGCTACACTTCGTCGTCGA 59.130 50.000 0.00 0.00 44.66 4.20
624 675 2.429061 CTAAGCTACACTTCGTCGTCG 58.571 52.381 0.00 0.00 39.97 5.12
625 676 2.783333 CCTAAGCTACACTTCGTCGTC 58.217 52.381 0.00 0.00 39.97 4.20
626 677 1.135460 GCCTAAGCTACACTTCGTCGT 60.135 52.381 0.00 0.00 39.97 4.34
627 678 1.546834 GCCTAAGCTACACTTCGTCG 58.453 55.000 0.00 0.00 39.97 5.12
628 679 1.203994 TGGCCTAAGCTACACTTCGTC 59.796 52.381 3.32 0.00 39.97 4.20
629 680 1.263356 TGGCCTAAGCTACACTTCGT 58.737 50.000 3.32 0.00 39.97 3.85
630 681 2.000447 GTTGGCCTAAGCTACACTTCG 59.000 52.381 3.32 0.00 39.97 3.79
631 682 2.000447 CGTTGGCCTAAGCTACACTTC 59.000 52.381 3.32 0.00 39.97 3.01
632 683 1.346722 ACGTTGGCCTAAGCTACACTT 59.653 47.619 3.32 0.00 42.76 3.16
633 684 0.974383 ACGTTGGCCTAAGCTACACT 59.026 50.000 3.32 0.00 39.73 3.55
634 685 1.076332 CACGTTGGCCTAAGCTACAC 58.924 55.000 3.32 0.00 39.73 2.90
635 686 0.970640 TCACGTTGGCCTAAGCTACA 59.029 50.000 3.32 0.00 39.73 2.74
636 687 2.311124 ATCACGTTGGCCTAAGCTAC 57.689 50.000 3.32 0.00 39.73 3.58
637 688 3.267483 GAAATCACGTTGGCCTAAGCTA 58.733 45.455 3.32 0.00 39.73 3.32
638 689 2.084546 GAAATCACGTTGGCCTAAGCT 58.915 47.619 3.32 0.00 39.73 3.74
639 690 1.810151 TGAAATCACGTTGGCCTAAGC 59.190 47.619 3.32 0.00 38.76 3.09
640 691 4.876107 ACTATGAAATCACGTTGGCCTAAG 59.124 41.667 3.32 0.12 0.00 2.18
641 692 4.839121 ACTATGAAATCACGTTGGCCTAA 58.161 39.130 3.32 0.00 0.00 2.69
642 693 4.481368 ACTATGAAATCACGTTGGCCTA 57.519 40.909 3.32 0.00 0.00 3.93
643 694 3.350219 ACTATGAAATCACGTTGGCCT 57.650 42.857 3.32 0.00 0.00 5.19
644 695 3.560068 CCTACTATGAAATCACGTTGGCC 59.440 47.826 0.00 0.00 0.00 5.36
645 696 4.189231 ACCTACTATGAAATCACGTTGGC 58.811 43.478 11.97 0.00 32.78 4.52
646 697 5.983720 CCTACCTACTATGAAATCACGTTGG 59.016 44.000 11.05 11.05 34.35 3.77
647 698 6.802608 TCCTACCTACTATGAAATCACGTTG 58.197 40.000 0.00 0.00 0.00 4.10
648 699 7.598759 ATCCTACCTACTATGAAATCACGTT 57.401 36.000 0.00 0.00 0.00 3.99
649 700 7.598759 AATCCTACCTACTATGAAATCACGT 57.401 36.000 0.00 0.00 0.00 4.49
650 701 8.888579 AAAATCCTACCTACTATGAAATCACG 57.111 34.615 0.00 0.00 0.00 4.35
681 732 9.941325 ATCTCATATTTACAAACCATGCAAAAA 57.059 25.926 0.00 0.00 28.37 1.94
684 735 8.629158 GGTATCTCATATTTACAAACCATGCAA 58.371 33.333 0.00 0.00 0.00 4.08
685 736 7.777440 TGGTATCTCATATTTACAAACCATGCA 59.223 33.333 0.00 0.00 29.85 3.96
686 737 8.165239 TGGTATCTCATATTTACAAACCATGC 57.835 34.615 0.00 0.00 29.85 4.06
716 767 8.948631 TGACAGGTCAAGATCTTATAATTGAC 57.051 34.615 16.31 16.31 46.84 3.18
717 768 8.762645 ACTGACAGGTCAAGATCTTATAATTGA 58.237 33.333 7.86 0.00 39.39 2.57
718 769 8.824781 CACTGACAGGTCAAGATCTTATAATTG 58.175 37.037 7.86 6.19 39.39 2.32
719 770 8.543774 ACACTGACAGGTCAAGATCTTATAATT 58.456 33.333 7.86 0.00 39.39 1.40
720 771 8.083828 ACACTGACAGGTCAAGATCTTATAAT 57.916 34.615 7.86 0.00 39.39 1.28
721 772 7.363880 GGACACTGACAGGTCAAGATCTTATAA 60.364 40.741 19.39 0.00 39.39 0.98
722 773 6.096987 GGACACTGACAGGTCAAGATCTTATA 59.903 42.308 19.39 0.00 39.39 0.98
723 774 5.105146 GGACACTGACAGGTCAAGATCTTAT 60.105 44.000 19.39 0.00 39.39 1.73
724 775 4.220821 GGACACTGACAGGTCAAGATCTTA 59.779 45.833 19.39 0.00 39.39 2.10
725 776 3.007398 GGACACTGACAGGTCAAGATCTT 59.993 47.826 19.39 0.88 39.39 2.40
726 777 2.564947 GGACACTGACAGGTCAAGATCT 59.435 50.000 19.39 0.00 39.39 2.75
727 778 2.300152 TGGACACTGACAGGTCAAGATC 59.700 50.000 19.39 1.59 39.39 2.75
728 779 2.037772 GTGGACACTGACAGGTCAAGAT 59.962 50.000 19.39 0.00 39.39 2.40
729 780 1.412710 GTGGACACTGACAGGTCAAGA 59.587 52.381 19.39 6.21 39.39 3.02
730 781 1.414181 AGTGGACACTGACAGGTCAAG 59.586 52.381 19.39 2.28 40.75 3.02
731 782 1.496060 AGTGGACACTGACAGGTCAA 58.504 50.000 19.39 10.31 40.75 3.18
732 783 2.375014 TAGTGGACACTGACAGGTCA 57.625 50.000 14.86 1.70 42.52 4.02
733 784 2.028930 CCTTAGTGGACACTGACAGGTC 60.029 54.545 14.86 10.85 42.52 3.85
734 785 1.971357 CCTTAGTGGACACTGACAGGT 59.029 52.381 14.86 1.76 42.52 4.00
735 786 1.338200 GCCTTAGTGGACACTGACAGG 60.338 57.143 14.86 16.00 42.52 4.00
736 787 1.670087 CGCCTTAGTGGACACTGACAG 60.670 57.143 14.86 0.00 42.52 3.51
737 788 0.317160 CGCCTTAGTGGACACTGACA 59.683 55.000 14.86 0.00 42.52 3.58
738 789 1.014564 GCGCCTTAGTGGACACTGAC 61.015 60.000 14.86 1.39 42.52 3.51
739 790 1.292223 GCGCCTTAGTGGACACTGA 59.708 57.895 14.86 6.01 42.52 3.41
740 791 1.005037 TGCGCCTTAGTGGACACTG 60.005 57.895 14.86 0.00 42.52 3.66
741 792 1.293498 CTGCGCCTTAGTGGACACT 59.707 57.895 4.18 10.15 45.02 3.55
742 793 1.004918 ACTGCGCCTTAGTGGACAC 60.005 57.895 4.18 0.00 38.35 3.67
743 794 1.292223 GACTGCGCCTTAGTGGACA 59.708 57.895 4.18 0.00 38.35 4.02
744 795 1.805945 CGACTGCGCCTTAGTGGAC 60.806 63.158 4.18 0.00 38.35 4.02
745 796 2.571757 CGACTGCGCCTTAGTGGA 59.428 61.111 4.18 0.00 38.35 4.02
763 814 4.873129 CACCCTCGACCGCGGATG 62.873 72.222 35.90 23.36 38.28 3.51
768 819 3.325201 AAATCCCACCCTCGACCGC 62.325 63.158 0.00 0.00 0.00 5.68
769 820 1.449601 CAAATCCCACCCTCGACCG 60.450 63.158 0.00 0.00 0.00 4.79
770 821 1.077716 CCAAATCCCACCCTCGACC 60.078 63.158 0.00 0.00 0.00 4.79
771 822 0.546598 ATCCAAATCCCACCCTCGAC 59.453 55.000 0.00 0.00 0.00 4.20
772 823 0.546122 CATCCAAATCCCACCCTCGA 59.454 55.000 0.00 0.00 0.00 4.04
773 824 1.103398 GCATCCAAATCCCACCCTCG 61.103 60.000 0.00 0.00 0.00 4.63
774 825 0.259938 AGCATCCAAATCCCACCCTC 59.740 55.000 0.00 0.00 0.00 4.30
775 826 0.712380 AAGCATCCAAATCCCACCCT 59.288 50.000 0.00 0.00 0.00 4.34
776 827 1.571955 AAAGCATCCAAATCCCACCC 58.428 50.000 0.00 0.00 0.00 4.61
777 828 3.118775 GGTAAAAGCATCCAAATCCCACC 60.119 47.826 0.00 0.00 0.00 4.61
778 829 3.118775 GGGTAAAAGCATCCAAATCCCAC 60.119 47.826 0.00 0.00 33.33 4.61
779 830 3.103742 GGGTAAAAGCATCCAAATCCCA 58.896 45.455 0.00 0.00 33.33 4.37
780 831 3.103742 TGGGTAAAAGCATCCAAATCCC 58.896 45.455 0.00 0.00 0.00 3.85
781 832 5.011023 CCTATGGGTAAAAGCATCCAAATCC 59.989 44.000 0.00 0.00 32.56 3.01
782 833 5.509670 GCCTATGGGTAAAAGCATCCAAATC 60.510 44.000 0.00 0.00 32.56 2.17
783 834 4.344968 GCCTATGGGTAAAAGCATCCAAAT 59.655 41.667 0.00 0.00 32.56 2.32
784 835 3.704061 GCCTATGGGTAAAAGCATCCAAA 59.296 43.478 0.00 0.00 32.56 3.28
785 836 3.295973 GCCTATGGGTAAAAGCATCCAA 58.704 45.455 0.00 0.00 32.56 3.53
786 837 2.424234 GGCCTATGGGTAAAAGCATCCA 60.424 50.000 0.00 0.00 34.45 3.41
787 838 2.239400 GGCCTATGGGTAAAAGCATCC 58.761 52.381 0.00 0.00 34.45 3.51
788 839 2.944129 TGGCCTATGGGTAAAAGCATC 58.056 47.619 3.32 0.00 34.45 3.91
789 840 3.618120 ATGGCCTATGGGTAAAAGCAT 57.382 42.857 3.32 0.00 34.45 3.79
790 841 3.750599 GCTATGGCCTATGGGTAAAAGCA 60.751 47.826 3.32 0.00 34.45 3.91
791 842 2.820197 GCTATGGCCTATGGGTAAAAGC 59.180 50.000 3.32 0.00 34.45 3.51
804 855 2.427095 CAACTTTGGTTAGGCTATGGCC 59.573 50.000 13.12 13.12 45.37 5.36
805 856 2.159240 GCAACTTTGGTTAGGCTATGGC 60.159 50.000 0.00 0.00 33.88 4.40
806 857 3.088532 TGCAACTTTGGTTAGGCTATGG 58.911 45.455 0.00 0.00 33.88 2.74
807 858 3.758554 ACTGCAACTTTGGTTAGGCTATG 59.241 43.478 0.00 0.00 33.88 2.23
808 859 4.010349 GACTGCAACTTTGGTTAGGCTAT 58.990 43.478 0.00 0.00 33.88 2.97
809 860 3.072476 AGACTGCAACTTTGGTTAGGCTA 59.928 43.478 0.00 0.00 30.12 3.93
810 861 2.158608 AGACTGCAACTTTGGTTAGGCT 60.159 45.455 0.00 0.00 33.88 4.58
814 865 4.566907 GGGGATAGACTGCAACTTTGGTTA 60.567 45.833 0.00 0.00 33.88 2.85
819 870 1.992557 TGGGGGATAGACTGCAACTTT 59.007 47.619 0.00 0.00 0.00 2.66
823 874 0.548926 TGGTGGGGGATAGACTGCAA 60.549 55.000 0.00 0.00 0.00 4.08
824 875 0.548926 TTGGTGGGGGATAGACTGCA 60.549 55.000 0.00 0.00 0.00 4.41
830 881 1.557832 TCGAGTTTTGGTGGGGGATAG 59.442 52.381 0.00 0.00 0.00 2.08
1213 1281 1.394618 CAGAGAAGAGTACGAGGGGG 58.605 60.000 0.00 0.00 0.00 5.40
1214 1282 0.741915 GCAGAGAAGAGTACGAGGGG 59.258 60.000 0.00 0.00 0.00 4.79
1215 1283 1.757682 AGCAGAGAAGAGTACGAGGG 58.242 55.000 0.00 0.00 0.00 4.30
1216 1284 3.506810 CAAAGCAGAGAAGAGTACGAGG 58.493 50.000 0.00 0.00 0.00 4.63
1217 1285 2.920490 GCAAAGCAGAGAAGAGTACGAG 59.080 50.000 0.00 0.00 0.00 4.18
1233 1301 2.883386 GGCCTCCATCTAATCAGCAAAG 59.117 50.000 0.00 0.00 0.00 2.77
1288 1357 4.630644 ATCATCACGGGATAAAGCTCAT 57.369 40.909 0.00 0.00 30.87 2.90
1291 1360 7.246171 ACTAATATCATCACGGGATAAAGCT 57.754 36.000 0.00 0.00 31.51 3.74
1341 1410 5.637006 TGGCTCCAACAAAATATGTACAC 57.363 39.130 0.00 0.00 42.99 2.90
1374 1443 3.088532 TCATGTGGCTCCAACCAAATAC 58.911 45.455 0.00 0.00 42.70 1.89
1484 1670 5.119694 CCTAAATCTTACTGCTCCTTGTCC 58.880 45.833 0.00 0.00 0.00 4.02
1485 1671 4.572795 GCCTAAATCTTACTGCTCCTTGTC 59.427 45.833 0.00 0.00 0.00 3.18
1486 1672 4.019321 TGCCTAAATCTTACTGCTCCTTGT 60.019 41.667 0.00 0.00 0.00 3.16
1512 1716 3.451526 ACGAGCACATACATGAGTCATG 58.548 45.455 27.88 27.88 46.18 3.07
1531 1735 5.063944 CAGATGTCCATTCTTAACCAAGACG 59.936 44.000 0.00 0.00 40.54 4.18
1540 1744 5.164620 TCAAGTGCAGATGTCCATTCTTA 57.835 39.130 0.00 0.00 0.00 2.10
1555 1759 8.244802 ACGGTACTCTAATCATATATCAAGTGC 58.755 37.037 0.00 0.00 0.00 4.40
1568 1772 8.485591 GTGCAAACAATATACGGTACTCTAATC 58.514 37.037 0.00 0.00 0.00 1.75
1636 1842 7.175641 CCACCCAGATGAATATGATTAAGTTCC 59.824 40.741 0.00 0.00 0.00 3.62
1683 1889 3.278668 AGCTCCATTTGAGTCTCATGG 57.721 47.619 14.18 14.18 43.48 3.66
1835 2053 5.174395 AGATGCTACTAAACACTCTGCAAG 58.826 41.667 0.00 0.00 32.66 4.01
1860 2083 1.002468 CAGCACACAGGTACAAAGCAC 60.002 52.381 0.00 0.00 0.00 4.40
2052 2278 5.163088 ACCATGACCTTCCTTAAAAGTCACT 60.163 40.000 0.00 0.00 0.00 3.41
2055 2281 5.313712 TGACCATGACCTTCCTTAAAAGTC 58.686 41.667 0.00 0.00 0.00 3.01
2245 2471 5.733226 AACACAGCAAATTTAACCAAAGC 57.267 34.783 0.00 0.00 0.00 3.51
2296 2522 3.438087 AGTATCTGCTGCACAATGTTGAC 59.562 43.478 0.00 0.00 0.00 3.18
2576 2819 8.401490 AGCCTATTTCCATCATAATTGTCTTC 57.599 34.615 0.00 0.00 0.00 2.87
2627 2870 6.413892 TCTAGTATGTCATGCATTTGTGGAA 58.586 36.000 0.00 0.00 38.94 3.53
2774 3182 9.755804 TTCATCATTGCTTTTTGTACATGTTAA 57.244 25.926 2.30 0.00 0.00 2.01
2876 3290 5.988310 TCCACAATGAAATGAGCAAGAAT 57.012 34.783 0.00 0.00 0.00 2.40
2918 3335 4.003648 CACCTTCTACTGCCCAGTTTAAG 58.996 47.826 6.21 9.96 42.54 1.85
2929 3346 5.452077 GCAGTAAGATACCCACCTTCTACTG 60.452 48.000 0.00 0.00 35.60 2.74
2933 3350 3.725634 AGCAGTAAGATACCCACCTTCT 58.274 45.455 0.00 0.00 0.00 2.85
2947 3364 5.670485 CACCACCAACTCATATAGCAGTAA 58.330 41.667 0.00 0.00 0.00 2.24
2964 3381 2.790433 TCCTAAAATGTCAGCACCACC 58.210 47.619 0.00 0.00 0.00 4.61
2971 3388 5.649782 ACATGGCTTTCCTAAAATGTCAG 57.350 39.130 0.00 0.00 0.00 3.51
2979 3396 6.605594 CCTACCAAATTACATGGCTTTCCTAA 59.394 38.462 0.00 0.00 41.89 2.69
3000 3417 5.678955 ATGTTGAACTCCTACCTTCCTAC 57.321 43.478 0.00 0.00 0.00 3.18
3034 3451 0.625316 AACATGCATGGGGCTCACTA 59.375 50.000 29.41 0.00 45.15 2.74
3035 3452 0.682209 GAACATGCATGGGGCTCACT 60.682 55.000 29.41 3.93 45.15 3.41
3036 3453 0.966875 TGAACATGCATGGGGCTCAC 60.967 55.000 29.41 12.69 45.15 3.51
3037 3454 0.032912 ATGAACATGCATGGGGCTCA 60.033 50.000 29.41 23.35 45.15 4.26
3038 3455 0.672342 GATGAACATGCATGGGGCTC 59.328 55.000 29.41 19.15 45.15 4.70
3101 3522 3.680196 GCTAACCAGATTCCTGAGTGGAC 60.680 52.174 0.00 0.00 46.14 4.02
3197 3619 9.713713 AGAAAGTAGAAAGAAGTAGAAATGGAC 57.286 33.333 0.00 0.00 0.00 4.02
3225 3648 5.465532 TCTTTGCCAAAATCACAAGCATA 57.534 34.783 0.00 0.00 32.67 3.14
3283 3785 2.728318 CGTTCATCTGTCTGTGTGTCAG 59.272 50.000 0.00 0.00 44.85 3.51
3296 3839 7.360101 GCAAGTACATTTTGTAGTCGTTCATCT 60.360 37.037 0.00 0.00 35.59 2.90
3299 3842 5.524281 TGCAAGTACATTTTGTAGTCGTTCA 59.476 36.000 0.00 0.00 35.59 3.18
3467 4047 1.134037 AGGTAGAAACGTTGGGCACAA 60.134 47.619 0.00 0.00 0.00 3.33
3552 4132 0.671781 CTTGCCAACTGAGCTACGCT 60.672 55.000 0.00 0.00 43.88 5.07
3553 4133 1.639298 CCTTGCCAACTGAGCTACGC 61.639 60.000 0.00 0.00 0.00 4.42
3554 4134 1.639298 GCCTTGCCAACTGAGCTACG 61.639 60.000 0.00 0.00 0.00 3.51
3555 4135 1.639298 CGCCTTGCCAACTGAGCTAC 61.639 60.000 0.00 0.00 0.00 3.58
3556 4136 1.375908 CGCCTTGCCAACTGAGCTA 60.376 57.895 0.00 0.00 0.00 3.32
3557 4137 2.670934 CGCCTTGCCAACTGAGCT 60.671 61.111 0.00 0.00 0.00 4.09
3558 4138 4.410743 GCGCCTTGCCAACTGAGC 62.411 66.667 0.00 0.00 37.76 4.26
3559 4139 4.093952 CGCGCCTTGCCAACTGAG 62.094 66.667 0.00 0.00 42.08 3.35
3582 4162 4.889112 ATGATGGGCTGGCTGCGG 62.889 66.667 10.35 0.00 44.05 5.69
3583 4163 1.952102 AAAATGATGGGCTGGCTGCG 61.952 55.000 10.35 0.00 44.05 5.18
3584 4164 1.113788 TAAAATGATGGGCTGGCTGC 58.886 50.000 7.96 7.96 41.94 5.25
3585 4165 3.228453 AGATAAAATGATGGGCTGGCTG 58.772 45.455 0.00 0.00 0.00 4.85
3586 4166 3.607490 AGATAAAATGATGGGCTGGCT 57.393 42.857 0.00 0.00 0.00 4.75
3587 4167 5.244626 ACATAAGATAAAATGATGGGCTGGC 59.755 40.000 0.00 0.00 0.00 4.85
3588 4168 6.294899 CCACATAAGATAAAATGATGGGCTGG 60.295 42.308 0.00 0.00 0.00 4.85
3589 4169 6.684686 CCACATAAGATAAAATGATGGGCTG 58.315 40.000 0.00 0.00 0.00 4.85
3590 4170 5.244626 GCCACATAAGATAAAATGATGGGCT 59.755 40.000 0.00 0.00 36.43 5.19
3591 4171 5.010922 TGCCACATAAGATAAAATGATGGGC 59.989 40.000 0.00 0.00 38.07 5.36
3592 4172 6.491062 TCTGCCACATAAGATAAAATGATGGG 59.509 38.462 0.00 0.00 30.99 4.00
3593 4173 7.514784 TCTGCCACATAAGATAAAATGATGG 57.485 36.000 0.00 0.00 32.28 3.51
3635 4217 6.599244 TGGTTTCATGAAGATGATAGGTCAAC 59.401 38.462 8.41 0.00 38.43 3.18
3643 4225 6.718454 AGTTTCACTGGTTTCATGAAGATGAT 59.282 34.615 8.41 0.00 38.43 2.45
3820 4403 3.522553 GGTTCCCAAACTACTGATCTCG 58.477 50.000 0.00 0.00 35.61 4.04
3864 4447 3.623060 ACATCCAATTACAGTTGCTAGCG 59.377 43.478 10.77 0.00 0.00 4.26
3929 4514 5.880332 TGCATACCTTTCCTGTTATGTTCTC 59.120 40.000 0.00 0.00 0.00 2.87
3941 4526 2.819608 TCAGCTTTGTGCATACCTTTCC 59.180 45.455 0.00 0.00 45.94 3.13
3955 4540 2.037772 AGAGAACATCACGGTCAGCTTT 59.962 45.455 0.00 0.00 0.00 3.51
3996 4582 5.647658 CCAGACAATAGATGTTGCCTGTTTA 59.352 40.000 5.26 0.00 44.12 2.01
4052 4638 7.415229 AGAACCAGTCGTAGAAAAACAATTTC 58.585 34.615 0.00 0.00 39.69 2.17
4053 4639 7.329588 AGAACCAGTCGTAGAAAAACAATTT 57.670 32.000 0.00 0.00 39.69 1.82
4054 4640 6.937436 AGAACCAGTCGTAGAAAAACAATT 57.063 33.333 0.00 0.00 39.69 2.32
4055 4641 7.306983 CGTTAGAACCAGTCGTAGAAAAACAAT 60.307 37.037 0.00 0.00 39.69 2.71
4056 4642 6.019640 CGTTAGAACCAGTCGTAGAAAAACAA 60.020 38.462 0.00 0.00 39.69 2.83
4057 4643 5.459762 CGTTAGAACCAGTCGTAGAAAAACA 59.540 40.000 0.00 0.00 39.69 2.83
4058 4644 5.460091 ACGTTAGAACCAGTCGTAGAAAAAC 59.540 40.000 0.00 0.00 39.69 2.43
4059 4645 5.591099 ACGTTAGAACCAGTCGTAGAAAAA 58.409 37.500 0.00 0.00 39.69 1.94
4060 4646 5.186996 ACGTTAGAACCAGTCGTAGAAAA 57.813 39.130 0.00 0.00 39.69 2.29
4061 4647 4.836125 ACGTTAGAACCAGTCGTAGAAA 57.164 40.909 0.00 0.00 39.69 2.52
4062 4648 4.836125 AACGTTAGAACCAGTCGTAGAA 57.164 40.909 0.00 0.00 39.69 2.10
4098 4684 6.405278 AACGAAAATGGAAACCTTCATCTT 57.595 33.333 0.00 0.00 0.00 2.40
4099 4685 6.215845 CAAACGAAAATGGAAACCTTCATCT 58.784 36.000 0.00 0.00 0.00 2.90
4100 4686 5.107491 GCAAACGAAAATGGAAACCTTCATC 60.107 40.000 0.00 0.00 0.00 2.92
4101 4687 4.749598 GCAAACGAAAATGGAAACCTTCAT 59.250 37.500 0.00 0.00 0.00 2.57
4162 4753 4.257447 CGATTTTCGCAACAAACGACATAG 59.743 41.667 0.00 0.00 39.67 2.23
4168 4759 2.270176 CGATCGATTTTCGCAACAAACG 59.730 45.455 10.26 0.00 40.21 3.60
4186 4777 9.099454 GTTTTCTCCTTCATGTTCTAATACGAT 57.901 33.333 0.00 0.00 0.00 3.73
4261 4854 8.982723 ACTAGATATTTATGCCGACCAGATATT 58.017 33.333 0.00 0.00 0.00 1.28
4344 4945 8.687301 GTTCTTGTTGACATACGTTTTTAATGG 58.313 33.333 0.00 0.00 0.00 3.16
4349 4950 6.262601 CCAGTTCTTGTTGACATACGTTTTT 58.737 36.000 0.00 0.00 0.00 1.94
4350 4951 5.220970 CCCAGTTCTTGTTGACATACGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
4351 4952 4.274950 CCCAGTTCTTGTTGACATACGTTT 59.725 41.667 0.00 0.00 0.00 3.60
4352 4953 3.813166 CCCAGTTCTTGTTGACATACGTT 59.187 43.478 0.00 0.00 0.00 3.99
4353 4954 3.070446 TCCCAGTTCTTGTTGACATACGT 59.930 43.478 0.00 0.00 0.00 3.57
4354 4955 3.432252 GTCCCAGTTCTTGTTGACATACG 59.568 47.826 0.00 0.00 30.88 3.06
4356 4957 4.346709 TCTGTCCCAGTTCTTGTTGACATA 59.653 41.667 0.00 0.00 36.60 2.29
4425 5046 5.008613 TCTCTCAAAAAGTGCATGTTGTACC 59.991 40.000 0.00 0.00 33.24 3.34
4426 5047 6.060028 TCTCTCAAAAAGTGCATGTTGTAC 57.940 37.500 0.00 0.00 32.95 2.90
4438 5059 8.909671 GTTGAAATATGCACTTCTCTCAAAAAG 58.090 33.333 0.00 0.00 0.00 2.27
4511 5132 3.777522 AGTTTGGGGTTGATTTTTGGACA 59.222 39.130 0.00 0.00 0.00 4.02
4515 5136 9.942850 ATTATAAGAGTTTGGGGTTGATTTTTG 57.057 29.630 0.00 0.00 0.00 2.44
4545 5166 2.308866 GGGAGAAAGGGTTGAATCCTGA 59.691 50.000 0.00 0.00 34.34 3.86
4600 5226 0.036306 GACTGGATGGTCAACGGGTT 59.964 55.000 0.00 0.00 36.35 4.11
4758 5396 8.537728 TGGGCAGAATATCATCACTTTTTATT 57.462 30.769 0.00 0.00 0.00 1.40
4760 5398 7.118723 ACTGGGCAGAATATCATCACTTTTTA 58.881 34.615 0.00 0.00 0.00 1.52
4771 5409 5.048083 TGTCACAAAAACTGGGCAGAATATC 60.048 40.000 0.00 0.00 0.00 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.