Multiple sequence alignment - TraesCS7B01G389200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G389200 chr7B 100.000 2771 0 0 1 2771 655820277 655817507 0.000000e+00 5118.0
1 TraesCS7B01G389200 chr7B 95.556 90 4 0 105 194 655820084 655820173 8.000000e-31 145.0
2 TraesCS7B01G389200 chr7B 90.909 99 6 3 102 197 344315212 344315114 2.240000e-26 130.0
3 TraesCS7B01G389200 chr7B 89.000 100 7 3 105 204 539928536 539928441 1.350000e-23 121.0
4 TraesCS7B01G389200 chr7D 92.851 2266 144 9 514 2771 16751466 16753721 0.000000e+00 3271.0
5 TraesCS7B01G389200 chr4A 92.860 2143 140 8 464 2597 717823552 717821414 0.000000e+00 3097.0
6 TraesCS7B01G389200 chr4A 82.103 1436 214 23 551 1957 717760049 717758628 0.000000e+00 1188.0
7 TraesCS7B01G389200 chr4A 82.033 1436 215 23 551 1957 717296640 717298061 0.000000e+00 1182.0
8 TraesCS7B01G389200 chr4A 93.617 188 11 1 2584 2771 717819543 717819357 2.100000e-71 279.0
9 TraesCS7B01G389200 chr4A 91.566 83 7 0 1 83 717823677 717823595 6.270000e-22 115.0
10 TraesCS7B01G389200 chr4A 97.727 44 1 0 191 234 717823580 717823537 2.960000e-10 76.8
11 TraesCS7B01G389200 chr7A 89.603 1914 125 32 479 2346 15787430 15789315 0.000000e+00 2364.0
12 TraesCS7B01G389200 chr7A 89.504 1915 126 32 479 2346 15815313 15817199 0.000000e+00 2353.0
13 TraesCS7B01G389200 chr7A 81.015 1438 224 31 550 1957 16398083 16396665 0.000000e+00 1098.0
14 TraesCS7B01G389200 chr7A 84.545 977 145 4 926 1897 15843058 15844033 0.000000e+00 963.0
15 TraesCS7B01G389200 chr7A 90.000 80 3 3 389 466 645071944 645071868 6.320000e-17 99.0
16 TraesCS7B01G389200 chrUn 91.775 1544 107 12 479 2008 318851703 318853240 0.000000e+00 2130.0
17 TraesCS7B01G389200 chr2B 90.816 98 5 3 103 200 79359487 79359580 8.060000e-26 128.0
18 TraesCS7B01G389200 chr2B 90.722 97 4 4 100 196 81171395 81171486 1.040000e-24 124.0
19 TraesCS7B01G389200 chr2B 92.727 55 4 0 396 450 613174184 613174238 2.290000e-11 80.5
20 TraesCS7B01G389200 chr2B 86.364 66 8 1 396 460 626653567 626653502 1.380000e-08 71.3
21 TraesCS7B01G389200 chr6B 89.320 103 6 2 94 195 645538323 645538225 1.040000e-24 124.0
22 TraesCS7B01G389200 chr6B 88.889 54 5 1 409 461 46460074 46460021 6.410000e-07 65.8
23 TraesCS7B01G389200 chr1B 90.722 97 4 4 100 196 420918070 420918161 1.040000e-24 124.0
24 TraesCS7B01G389200 chr3A 87.273 110 8 5 96 204 743107624 743107728 1.350000e-23 121.0
25 TraesCS7B01G389200 chr1A 87.273 110 8 5 96 204 556789193 556789297 1.350000e-23 121.0
26 TraesCS7B01G389200 chr4D 77.376 221 34 10 240 449 23478162 23478377 1.740000e-22 117.0
27 TraesCS7B01G389200 chr2A 90.667 75 5 2 396 470 745782929 745783001 6.320000e-17 99.0
28 TraesCS7B01G389200 chr3B 90.000 60 5 1 396 454 662499500 662499559 2.960000e-10 76.8
29 TraesCS7B01G389200 chr4B 84.507 71 6 3 396 465 588205722 588205788 6.410000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G389200 chr7B 655817507 655820277 2770 True 5118.00 5118 100.0000 1 2771 1 chr7B.!!$R3 2770
1 TraesCS7B01G389200 chr7D 16751466 16753721 2255 False 3271.00 3271 92.8510 514 2771 1 chr7D.!!$F1 2257
2 TraesCS7B01G389200 chr4A 717758628 717760049 1421 True 1188.00 1188 82.1030 551 1957 1 chr4A.!!$R1 1406
3 TraesCS7B01G389200 chr4A 717296640 717298061 1421 False 1182.00 1182 82.0330 551 1957 1 chr4A.!!$F1 1406
4 TraesCS7B01G389200 chr4A 717819357 717823677 4320 True 891.95 3097 93.9425 1 2771 4 chr4A.!!$R2 2770
5 TraesCS7B01G389200 chr7A 15787430 15789315 1885 False 2364.00 2364 89.6030 479 2346 1 chr7A.!!$F1 1867
6 TraesCS7B01G389200 chr7A 15815313 15817199 1886 False 2353.00 2353 89.5040 479 2346 1 chr7A.!!$F2 1867
7 TraesCS7B01G389200 chr7A 16396665 16398083 1418 True 1098.00 1098 81.0150 550 1957 1 chr7A.!!$R1 1407
8 TraesCS7B01G389200 chr7A 15843058 15844033 975 False 963.00 963 84.5450 926 1897 1 chr7A.!!$F3 971
9 TraesCS7B01G389200 chrUn 318851703 318853240 1537 False 2130.00 2130 91.7750 479 2008 1 chrUn.!!$F1 1529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.240411 CTATCTACCGCCCGTGTAGC 59.760 60.0 9.8 0.0 36.47 3.58 F
376 377 0.245539 GGTGTAGGTCAGCAGCGTTA 59.754 55.0 0.0 0.0 43.22 3.18 F
954 984 0.465824 GATTGGCTGATCCTGCTGCT 60.466 55.0 0.0 0.0 35.26 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1569 0.110486 TCACCCACCTTGCCTTCTTC 59.890 55.0 0.0 0.0 0.00 2.87 R
1703 1736 0.179089 AGCTCTCTGCCATAGTTGCG 60.179 55.0 0.0 0.0 44.23 4.85 R
1770 1803 0.185901 AGGTTGGCACCAATCTGTGT 59.814 50.0 14.4 0.0 44.74 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.384846 CGTGGTGTGTATTGTTCAGTAGAC 59.615 45.833 0.00 0.00 0.00 2.59
41 42 5.294356 GTGGTGTGTATTGTTCAGTAGACA 58.706 41.667 2.30 2.30 0.00 3.41
42 43 5.176958 GTGGTGTGTATTGTTCAGTAGACAC 59.823 44.000 19.50 19.50 41.62 3.67
83 84 1.033574 ACAGCCTGTCTATCTACCGC 58.966 55.000 0.00 0.00 0.00 5.68
84 85 0.315568 CAGCCTGTCTATCTACCGCC 59.684 60.000 0.00 0.00 0.00 6.13
85 86 0.828343 AGCCTGTCTATCTACCGCCC 60.828 60.000 0.00 0.00 0.00 6.13
86 87 1.957562 CCTGTCTATCTACCGCCCG 59.042 63.158 0.00 0.00 0.00 6.13
87 88 0.822532 CCTGTCTATCTACCGCCCGT 60.823 60.000 0.00 0.00 0.00 5.28
88 89 0.311165 CTGTCTATCTACCGCCCGTG 59.689 60.000 0.00 0.00 0.00 4.94
90 91 1.134128 TGTCTATCTACCGCCCGTGTA 60.134 52.381 0.00 0.00 0.00 2.90
91 92 1.534595 GTCTATCTACCGCCCGTGTAG 59.465 57.143 8.87 8.87 37.60 2.74
92 93 0.240411 CTATCTACCGCCCGTGTAGC 59.760 60.000 9.80 0.00 36.47 3.58
94 95 1.113517 ATCTACCGCCCGTGTAGCAT 61.114 55.000 9.80 4.72 36.47 3.79
95 96 1.591594 CTACCGCCCGTGTAGCATG 60.592 63.158 0.00 0.00 30.23 4.06
96 97 3.726595 TACCGCCCGTGTAGCATGC 62.727 63.158 10.51 10.51 0.00 4.06
98 99 2.896854 CGCCCGTGTAGCATGCAT 60.897 61.111 21.98 7.68 29.67 3.96
99 100 2.885676 CGCCCGTGTAGCATGCATC 61.886 63.158 21.98 12.62 29.67 3.91
100 101 1.524621 GCCCGTGTAGCATGCATCT 60.525 57.895 21.98 1.04 29.67 2.90
101 102 0.249868 GCCCGTGTAGCATGCATCTA 60.250 55.000 21.98 0.00 29.67 1.98
102 103 1.609061 GCCCGTGTAGCATGCATCTAT 60.609 52.381 21.98 0.16 29.67 1.98
103 104 2.071540 CCCGTGTAGCATGCATCTATG 58.928 52.381 21.98 8.32 29.67 2.23
104 105 2.548707 CCCGTGTAGCATGCATCTATGT 60.549 50.000 21.98 0.00 29.67 2.29
105 106 3.306019 CCCGTGTAGCATGCATCTATGTA 60.306 47.826 21.98 0.00 29.67 2.29
106 107 3.675225 CCGTGTAGCATGCATCTATGTAC 59.325 47.826 21.98 11.93 29.67 2.90
107 108 4.550422 CGTGTAGCATGCATCTATGTACT 58.450 43.478 21.98 0.00 29.67 2.73
108 109 4.618912 CGTGTAGCATGCATCTATGTACTC 59.381 45.833 21.98 11.03 29.67 2.59
109 110 4.926238 GTGTAGCATGCATCTATGTACTCC 59.074 45.833 21.98 3.48 29.67 3.85
110 111 3.692257 AGCATGCATCTATGTACTCCC 57.308 47.619 21.98 0.00 0.00 4.30
111 112 3.246301 AGCATGCATCTATGTACTCCCT 58.754 45.455 21.98 0.00 0.00 4.20
112 113 3.260380 AGCATGCATCTATGTACTCCCTC 59.740 47.826 21.98 0.00 0.00 4.30
113 114 3.260380 GCATGCATCTATGTACTCCCTCT 59.740 47.826 14.21 0.00 0.00 3.69
114 115 4.818642 CATGCATCTATGTACTCCCTCTG 58.181 47.826 0.00 0.00 0.00 3.35
115 116 3.916035 TGCATCTATGTACTCCCTCTGT 58.084 45.455 0.00 0.00 0.00 3.41
116 117 4.290093 TGCATCTATGTACTCCCTCTGTT 58.710 43.478 0.00 0.00 0.00 3.16
117 118 4.342378 TGCATCTATGTACTCCCTCTGTTC 59.658 45.833 0.00 0.00 0.00 3.18
118 119 4.262249 GCATCTATGTACTCCCTCTGTTCC 60.262 50.000 0.00 0.00 0.00 3.62
119 120 4.603094 TCTATGTACTCCCTCTGTTCCA 57.397 45.455 0.00 0.00 0.00 3.53
120 121 4.942944 TCTATGTACTCCCTCTGTTCCAA 58.057 43.478 0.00 0.00 0.00 3.53
121 122 5.338632 TCTATGTACTCCCTCTGTTCCAAA 58.661 41.667 0.00 0.00 0.00 3.28
122 123 4.993705 ATGTACTCCCTCTGTTCCAAAA 57.006 40.909 0.00 0.00 0.00 2.44
123 124 4.993705 TGTACTCCCTCTGTTCCAAAAT 57.006 40.909 0.00 0.00 0.00 1.82
124 125 6.636454 ATGTACTCCCTCTGTTCCAAAATA 57.364 37.500 0.00 0.00 0.00 1.40
125 126 6.049955 TGTACTCCCTCTGTTCCAAAATAG 57.950 41.667 0.00 0.00 0.00 1.73
126 127 5.783360 TGTACTCCCTCTGTTCCAAAATAGA 59.217 40.000 0.00 0.00 32.42 1.98
127 128 6.443849 TGTACTCCCTCTGTTCCAAAATAGAT 59.556 38.462 0.00 0.00 32.88 1.98
128 129 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
129 130 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
130 131 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
131 132 5.488919 TCCCTCTGTTCCAAAATAGATGACT 59.511 40.000 0.00 0.00 32.88 3.41
132 133 5.819901 CCCTCTGTTCCAAAATAGATGACTC 59.180 44.000 0.00 0.00 32.88 3.36
133 134 6.409704 CCTCTGTTCCAAAATAGATGACTCA 58.590 40.000 0.00 0.00 32.88 3.41
134 135 6.881065 CCTCTGTTCCAAAATAGATGACTCAA 59.119 38.462 0.00 0.00 32.88 3.02
135 136 7.148340 CCTCTGTTCCAAAATAGATGACTCAAC 60.148 40.741 0.00 0.00 32.88 3.18
136 137 7.453393 TCTGTTCCAAAATAGATGACTCAACT 58.547 34.615 0.00 0.00 28.72 3.16
137 138 7.939039 TCTGTTCCAAAATAGATGACTCAACTT 59.061 33.333 0.00 0.00 28.72 2.66
138 139 9.219603 CTGTTCCAAAATAGATGACTCAACTTA 57.780 33.333 0.00 0.00 0.00 2.24
139 140 9.219603 TGTTCCAAAATAGATGACTCAACTTAG 57.780 33.333 0.00 0.00 0.00 2.18
140 141 9.220767 GTTCCAAAATAGATGACTCAACTTAGT 57.779 33.333 0.00 0.00 0.00 2.24
142 143 9.871238 TCCAAAATAGATGACTCAACTTAGTAC 57.129 33.333 0.00 0.00 0.00 2.73
143 144 9.877178 CCAAAATAGATGACTCAACTTAGTACT 57.123 33.333 0.00 0.00 0.00 2.73
180 181 9.877178 AGTACTAAGTTGAGTCATCTATTTTGG 57.123 33.333 4.14 0.00 0.00 3.28
181 182 9.871238 GTACTAAGTTGAGTCATCTATTTTGGA 57.129 33.333 4.14 0.00 0.00 3.53
183 184 9.220767 ACTAAGTTGAGTCATCTATTTTGGAAC 57.779 33.333 4.14 0.00 0.00 3.62
184 185 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
185 186 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
186 187 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
187 188 5.800296 TGAGTCATCTATTTTGGAACGGAA 58.200 37.500 0.00 0.00 0.00 4.30
188 189 5.874810 TGAGTCATCTATTTTGGAACGGAAG 59.125 40.000 0.00 0.00 0.00 3.46
189 190 5.186198 AGTCATCTATTTTGGAACGGAAGG 58.814 41.667 0.00 0.00 0.00 3.46
228 229 7.672983 TTATTCTGAGGAGCAACAACTTAAG 57.327 36.000 0.00 0.00 0.00 1.85
233 234 4.202461 TGAGGAGCAACAACTTAAGGTGAT 60.202 41.667 27.07 12.86 0.00 3.06
234 235 5.012664 TGAGGAGCAACAACTTAAGGTGATA 59.987 40.000 27.07 0.00 0.00 2.15
235 236 5.491982 AGGAGCAACAACTTAAGGTGATAG 58.508 41.667 27.07 15.63 0.00 2.08
236 237 4.636206 GGAGCAACAACTTAAGGTGATAGG 59.364 45.833 27.07 13.04 0.00 2.57
237 238 5.242795 AGCAACAACTTAAGGTGATAGGT 57.757 39.130 27.07 16.80 0.00 3.08
238 239 5.003804 AGCAACAACTTAAGGTGATAGGTG 58.996 41.667 27.07 15.50 32.88 4.00
239 240 5.001232 GCAACAACTTAAGGTGATAGGTGA 58.999 41.667 27.07 0.00 31.16 4.02
240 241 5.106673 GCAACAACTTAAGGTGATAGGTGAC 60.107 44.000 27.07 8.73 31.16 3.67
242 243 5.794894 ACAACTTAAGGTGATAGGTGACTG 58.205 41.667 27.07 0.00 43.88 3.51
243 244 5.307196 ACAACTTAAGGTGATAGGTGACTGT 59.693 40.000 27.07 0.00 43.88 3.55
244 245 5.407407 ACTTAAGGTGATAGGTGACTGTG 57.593 43.478 7.53 0.00 43.88 3.66
245 246 4.838986 ACTTAAGGTGATAGGTGACTGTGT 59.161 41.667 7.53 0.00 43.88 3.72
246 247 3.685139 AAGGTGATAGGTGACTGTGTG 57.315 47.619 0.00 0.00 43.88 3.82
247 248 2.609747 AGGTGATAGGTGACTGTGTGT 58.390 47.619 0.00 0.00 43.88 3.72
248 249 2.300152 AGGTGATAGGTGACTGTGTGTG 59.700 50.000 0.00 0.00 43.88 3.82
249 250 2.037251 GGTGATAGGTGACTGTGTGTGT 59.963 50.000 0.00 0.00 43.88 3.72
250 251 3.494398 GGTGATAGGTGACTGTGTGTGTT 60.494 47.826 0.00 0.00 43.88 3.32
251 252 4.127171 GTGATAGGTGACTGTGTGTGTTT 58.873 43.478 0.00 0.00 43.88 2.83
252 253 5.294356 GTGATAGGTGACTGTGTGTGTTTA 58.706 41.667 0.00 0.00 43.88 2.01
253 254 5.405571 GTGATAGGTGACTGTGTGTGTTTAG 59.594 44.000 0.00 0.00 43.88 1.85
254 255 5.303333 TGATAGGTGACTGTGTGTGTTTAGA 59.697 40.000 0.00 0.00 43.88 2.10
255 256 3.793559 AGGTGACTGTGTGTGTTTAGAC 58.206 45.455 0.00 0.00 41.13 2.59
256 257 3.451178 AGGTGACTGTGTGTGTTTAGACT 59.549 43.478 0.00 0.00 41.13 3.24
257 258 4.081087 AGGTGACTGTGTGTGTTTAGACTT 60.081 41.667 0.00 0.00 41.13 3.01
258 259 5.128171 AGGTGACTGTGTGTGTTTAGACTTA 59.872 40.000 0.00 0.00 41.13 2.24
259 260 5.462398 GGTGACTGTGTGTGTTTAGACTTAG 59.538 44.000 0.00 0.00 0.00 2.18
260 261 6.040878 GTGACTGTGTGTGTTTAGACTTAGT 58.959 40.000 0.00 0.00 0.00 2.24
261 262 6.534079 GTGACTGTGTGTGTTTAGACTTAGTT 59.466 38.462 0.00 0.00 0.00 2.24
262 263 7.064253 GTGACTGTGTGTGTTTAGACTTAGTTT 59.936 37.037 0.00 0.00 0.00 2.66
263 264 7.277098 TGACTGTGTGTGTTTAGACTTAGTTTC 59.723 37.037 0.00 0.00 0.00 2.78
264 265 7.328737 ACTGTGTGTGTTTAGACTTAGTTTCT 58.671 34.615 0.00 0.00 0.00 2.52
265 266 7.822822 ACTGTGTGTGTTTAGACTTAGTTTCTT 59.177 33.333 0.00 0.00 0.00 2.52
266 267 8.556213 TGTGTGTGTTTAGACTTAGTTTCTTT 57.444 30.769 0.00 0.00 0.00 2.52
267 268 9.005777 TGTGTGTGTTTAGACTTAGTTTCTTTT 57.994 29.630 0.00 0.00 0.00 2.27
268 269 9.274065 GTGTGTGTTTAGACTTAGTTTCTTTTG 57.726 33.333 0.00 0.00 0.00 2.44
269 270 7.966204 TGTGTGTTTAGACTTAGTTTCTTTTGC 59.034 33.333 0.00 0.00 0.00 3.68
270 271 7.966204 GTGTGTTTAGACTTAGTTTCTTTTGCA 59.034 33.333 0.00 0.00 0.00 4.08
271 272 8.181573 TGTGTTTAGACTTAGTTTCTTTTGCAG 58.818 33.333 0.00 0.00 0.00 4.41
272 273 7.644157 GTGTTTAGACTTAGTTTCTTTTGCAGG 59.356 37.037 0.00 0.00 0.00 4.85
273 274 4.837896 AGACTTAGTTTCTTTTGCAGGC 57.162 40.909 0.00 0.00 0.00 4.85
274 275 4.464947 AGACTTAGTTTCTTTTGCAGGCT 58.535 39.130 0.00 0.00 0.00 4.58
275 276 4.276926 AGACTTAGTTTCTTTTGCAGGCTG 59.723 41.667 10.94 10.94 0.00 4.85
276 277 3.319122 ACTTAGTTTCTTTTGCAGGCTGG 59.681 43.478 17.64 0.00 0.00 4.85
277 278 1.043022 AGTTTCTTTTGCAGGCTGGG 58.957 50.000 17.64 0.00 0.00 4.45
278 279 1.039856 GTTTCTTTTGCAGGCTGGGA 58.960 50.000 17.64 0.00 0.00 4.37
279 280 1.000171 GTTTCTTTTGCAGGCTGGGAG 60.000 52.381 17.64 0.00 0.00 4.30
280 281 0.540365 TTCTTTTGCAGGCTGGGAGG 60.540 55.000 17.64 0.00 0.00 4.30
281 282 1.228675 CTTTTGCAGGCTGGGAGGT 60.229 57.895 17.64 0.00 0.00 3.85
282 283 0.829182 CTTTTGCAGGCTGGGAGGTT 60.829 55.000 17.64 0.00 0.00 3.50
283 284 1.114722 TTTTGCAGGCTGGGAGGTTG 61.115 55.000 17.64 0.00 0.00 3.77
284 285 4.666253 TGCAGGCTGGGAGGTTGC 62.666 66.667 17.64 0.00 35.42 4.17
285 286 4.666253 GCAGGCTGGGAGGTTGCA 62.666 66.667 17.64 0.00 34.99 4.08
286 287 2.115910 CAGGCTGGGAGGTTGCAA 59.884 61.111 6.61 0.00 0.00 4.08
287 288 1.304713 CAGGCTGGGAGGTTGCAAT 60.305 57.895 6.61 0.00 0.00 3.56
288 289 1.000396 AGGCTGGGAGGTTGCAATC 60.000 57.895 0.59 0.23 0.00 2.67
289 290 2.054453 GGCTGGGAGGTTGCAATCC 61.054 63.158 5.96 8.39 34.64 3.01
290 291 1.000396 GCTGGGAGGTTGCAATCCT 60.000 57.895 16.71 16.95 38.09 3.24
291 292 1.318158 GCTGGGAGGTTGCAATCCTG 61.318 60.000 20.74 15.41 35.20 3.86
292 293 0.329261 CTGGGAGGTTGCAATCCTGA 59.671 55.000 20.74 7.83 35.20 3.86
293 294 1.002069 TGGGAGGTTGCAATCCTGAT 58.998 50.000 20.74 0.00 35.20 2.90
294 295 1.341285 TGGGAGGTTGCAATCCTGATG 60.341 52.381 20.74 0.00 35.20 3.07
295 296 1.064463 GGGAGGTTGCAATCCTGATGA 60.064 52.381 20.74 0.00 35.20 2.92
296 297 2.295885 GGAGGTTGCAATCCTGATGAG 58.704 52.381 20.74 0.00 35.20 2.90
297 298 2.356535 GGAGGTTGCAATCCTGATGAGT 60.357 50.000 20.74 0.00 35.20 3.41
298 299 3.118261 GGAGGTTGCAATCCTGATGAGTA 60.118 47.826 20.74 0.00 35.20 2.59
299 300 4.125703 GAGGTTGCAATCCTGATGAGTAG 58.874 47.826 20.74 0.00 35.20 2.57
300 301 3.118112 AGGTTGCAATCCTGATGAGTAGG 60.118 47.826 16.66 0.00 36.63 3.18
301 302 3.209410 GTTGCAATCCTGATGAGTAGGG 58.791 50.000 0.59 0.00 35.96 3.53
302 303 1.770658 TGCAATCCTGATGAGTAGGGG 59.229 52.381 0.00 0.00 35.96 4.79
303 304 1.072965 GCAATCCTGATGAGTAGGGGG 59.927 57.143 0.00 0.00 35.96 5.40
304 305 2.412591 CAATCCTGATGAGTAGGGGGT 58.587 52.381 0.00 0.00 35.96 4.95
305 306 2.105477 CAATCCTGATGAGTAGGGGGTG 59.895 54.545 0.00 0.00 35.96 4.61
306 307 0.691078 TCCTGATGAGTAGGGGGTGC 60.691 60.000 0.00 0.00 35.96 5.01
307 308 1.700042 CCTGATGAGTAGGGGGTGCC 61.700 65.000 0.00 0.00 0.00 5.01
308 309 0.692419 CTGATGAGTAGGGGGTGCCT 60.692 60.000 0.00 0.00 0.00 4.75
309 310 0.639943 TGATGAGTAGGGGGTGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
310 311 1.343069 GATGAGTAGGGGGTGCCTAG 58.657 60.000 0.00 0.00 0.00 3.02
311 312 0.642710 ATGAGTAGGGGGTGCCTAGT 59.357 55.000 0.00 0.00 0.00 2.57
312 313 0.416231 TGAGTAGGGGGTGCCTAGTT 59.584 55.000 0.00 0.00 0.00 2.24
313 314 1.203389 TGAGTAGGGGGTGCCTAGTTT 60.203 52.381 0.00 0.00 0.00 2.66
314 315 1.485480 GAGTAGGGGGTGCCTAGTTTC 59.515 57.143 0.00 0.00 0.00 2.78
315 316 0.545171 GTAGGGGGTGCCTAGTTTCC 59.455 60.000 0.00 0.00 0.00 3.13
316 317 0.420272 TAGGGGGTGCCTAGTTTCCT 59.580 55.000 0.00 0.00 0.00 3.36
317 318 0.420272 AGGGGGTGCCTAGTTTCCTA 59.580 55.000 0.00 0.00 0.00 2.94
318 319 0.545171 GGGGGTGCCTAGTTTCCTAC 59.455 60.000 0.00 0.00 0.00 3.18
319 320 1.282382 GGGGTGCCTAGTTTCCTACA 58.718 55.000 0.00 0.00 0.00 2.74
320 321 1.844497 GGGGTGCCTAGTTTCCTACAT 59.156 52.381 0.00 0.00 0.00 2.29
321 322 2.241430 GGGGTGCCTAGTTTCCTACATT 59.759 50.000 0.00 0.00 0.00 2.71
322 323 3.279434 GGGTGCCTAGTTTCCTACATTG 58.721 50.000 0.00 0.00 0.00 2.82
323 324 3.308188 GGGTGCCTAGTTTCCTACATTGT 60.308 47.826 0.00 0.00 0.00 2.71
324 325 4.332828 GGTGCCTAGTTTCCTACATTGTT 58.667 43.478 0.00 0.00 0.00 2.83
325 326 4.765339 GGTGCCTAGTTTCCTACATTGTTT 59.235 41.667 0.00 0.00 0.00 2.83
326 327 5.106277 GGTGCCTAGTTTCCTACATTGTTTC 60.106 44.000 0.00 0.00 0.00 2.78
327 328 5.472137 GTGCCTAGTTTCCTACATTGTTTCA 59.528 40.000 0.00 0.00 0.00 2.69
328 329 5.705441 TGCCTAGTTTCCTACATTGTTTCAG 59.295 40.000 0.00 0.00 0.00 3.02
329 330 5.123979 GCCTAGTTTCCTACATTGTTTCAGG 59.876 44.000 0.00 0.00 0.00 3.86
330 331 5.648092 CCTAGTTTCCTACATTGTTTCAGGG 59.352 44.000 0.00 0.00 0.00 4.45
331 332 4.407365 AGTTTCCTACATTGTTTCAGGGG 58.593 43.478 0.00 0.00 0.00 4.79
332 333 2.507407 TCCTACATTGTTTCAGGGGC 57.493 50.000 0.00 0.00 0.00 5.80
333 334 1.094785 CCTACATTGTTTCAGGGGCG 58.905 55.000 0.00 0.00 0.00 6.13
334 335 0.451783 CTACATTGTTTCAGGGGCGC 59.548 55.000 0.00 0.00 0.00 6.53
335 336 1.302383 TACATTGTTTCAGGGGCGCG 61.302 55.000 0.00 0.00 0.00 6.86
336 337 3.061848 ATTGTTTCAGGGGCGCGG 61.062 61.111 8.83 0.00 0.00 6.46
337 338 3.561120 ATTGTTTCAGGGGCGCGGA 62.561 57.895 8.83 0.00 0.00 5.54
338 339 2.837031 ATTGTTTCAGGGGCGCGGAT 62.837 55.000 8.83 0.00 0.00 4.18
339 340 3.202706 GTTTCAGGGGCGCGGATC 61.203 66.667 8.83 0.00 0.00 3.36
340 341 3.711814 TTTCAGGGGCGCGGATCA 61.712 61.111 8.83 0.00 0.00 2.92
341 342 3.042733 TTTCAGGGGCGCGGATCAT 62.043 57.895 8.83 0.00 0.00 2.45
342 343 2.550699 TTTCAGGGGCGCGGATCATT 62.551 55.000 8.83 0.00 0.00 2.57
343 344 3.282157 CAGGGGCGCGGATCATTG 61.282 66.667 8.83 0.00 0.00 2.82
344 345 4.569180 AGGGGCGCGGATCATTGG 62.569 66.667 8.83 0.00 0.00 3.16
345 346 4.562425 GGGGCGCGGATCATTGGA 62.562 66.667 8.83 0.00 0.00 3.53
346 347 2.281761 GGGCGCGGATCATTGGAT 60.282 61.111 8.83 0.00 36.13 3.41
357 358 4.986875 GATCATTGGATCTGTCGATGTG 57.013 45.455 0.00 0.00 45.32 3.21
358 359 3.183793 TCATTGGATCTGTCGATGTGG 57.816 47.619 0.00 0.00 0.00 4.17
359 360 2.501316 TCATTGGATCTGTCGATGTGGT 59.499 45.455 0.00 0.00 0.00 4.16
360 361 2.385013 TTGGATCTGTCGATGTGGTG 57.615 50.000 0.00 0.00 0.00 4.17
361 362 1.266178 TGGATCTGTCGATGTGGTGT 58.734 50.000 0.00 0.00 0.00 4.16
362 363 2.452505 TGGATCTGTCGATGTGGTGTA 58.547 47.619 0.00 0.00 0.00 2.90
363 364 2.427095 TGGATCTGTCGATGTGGTGTAG 59.573 50.000 0.00 0.00 0.00 2.74
364 365 2.223829 GGATCTGTCGATGTGGTGTAGG 60.224 54.545 0.00 0.00 0.00 3.18
365 366 1.919240 TCTGTCGATGTGGTGTAGGT 58.081 50.000 0.00 0.00 0.00 3.08
366 367 1.816835 TCTGTCGATGTGGTGTAGGTC 59.183 52.381 0.00 0.00 0.00 3.85
367 368 1.544246 CTGTCGATGTGGTGTAGGTCA 59.456 52.381 0.00 0.00 0.00 4.02
368 369 1.544246 TGTCGATGTGGTGTAGGTCAG 59.456 52.381 0.00 0.00 0.00 3.51
369 370 0.530744 TCGATGTGGTGTAGGTCAGC 59.469 55.000 0.00 0.00 43.90 4.26
374 375 2.657237 GGTGTAGGTCAGCAGCGT 59.343 61.111 0.00 0.00 43.22 5.07
375 376 1.004918 GGTGTAGGTCAGCAGCGTT 60.005 57.895 0.00 0.00 43.22 4.84
376 377 0.245539 GGTGTAGGTCAGCAGCGTTA 59.754 55.000 0.00 0.00 43.22 3.18
377 378 1.134788 GGTGTAGGTCAGCAGCGTTAT 60.135 52.381 0.00 0.00 43.22 1.89
378 379 2.194271 GTGTAGGTCAGCAGCGTTATC 58.806 52.381 0.00 0.00 0.00 1.75
379 380 2.100197 TGTAGGTCAGCAGCGTTATCT 58.900 47.619 0.00 0.00 0.00 1.98
380 381 2.159240 TGTAGGTCAGCAGCGTTATCTG 60.159 50.000 0.00 0.00 37.15 2.90
381 382 0.898320 AGGTCAGCAGCGTTATCTGT 59.102 50.000 0.00 0.00 36.49 3.41
382 383 2.100197 AGGTCAGCAGCGTTATCTGTA 58.900 47.619 0.00 0.00 36.49 2.74
383 384 2.496070 AGGTCAGCAGCGTTATCTGTAA 59.504 45.455 0.00 0.00 36.49 2.41
384 385 3.133003 AGGTCAGCAGCGTTATCTGTAAT 59.867 43.478 0.00 0.00 36.49 1.89
385 386 3.871594 GGTCAGCAGCGTTATCTGTAATT 59.128 43.478 0.00 0.00 36.49 1.40
386 387 4.332819 GGTCAGCAGCGTTATCTGTAATTT 59.667 41.667 0.00 0.00 36.49 1.82
387 388 5.493735 GTCAGCAGCGTTATCTGTAATTTC 58.506 41.667 0.00 0.00 36.49 2.17
388 389 4.267690 TCAGCAGCGTTATCTGTAATTTCG 59.732 41.667 0.00 0.00 36.49 3.46
389 390 3.555956 AGCAGCGTTATCTGTAATTTCGG 59.444 43.478 0.00 0.00 36.49 4.30
390 391 3.308866 GCAGCGTTATCTGTAATTTCGGT 59.691 43.478 0.00 0.00 36.49 4.69
391 392 4.550255 GCAGCGTTATCTGTAATTTCGGTC 60.550 45.833 0.00 0.00 36.49 4.79
392 393 4.804139 CAGCGTTATCTGTAATTTCGGTCT 59.196 41.667 0.00 0.00 0.00 3.85
393 394 4.804139 AGCGTTATCTGTAATTTCGGTCTG 59.196 41.667 0.00 0.00 0.00 3.51
394 395 4.025979 GCGTTATCTGTAATTTCGGTCTGG 60.026 45.833 0.00 0.00 0.00 3.86
395 396 4.506654 CGTTATCTGTAATTTCGGTCTGGG 59.493 45.833 0.00 0.00 0.00 4.45
396 397 5.425630 GTTATCTGTAATTTCGGTCTGGGT 58.574 41.667 0.00 0.00 0.00 4.51
397 398 4.569719 ATCTGTAATTTCGGTCTGGGTT 57.430 40.909 0.00 0.00 0.00 4.11
398 399 4.360951 TCTGTAATTTCGGTCTGGGTTT 57.639 40.909 0.00 0.00 0.00 3.27
399 400 4.069304 TCTGTAATTTCGGTCTGGGTTTG 58.931 43.478 0.00 0.00 0.00 2.93
400 401 3.818773 CTGTAATTTCGGTCTGGGTTTGT 59.181 43.478 0.00 0.00 0.00 2.83
401 402 4.970711 TGTAATTTCGGTCTGGGTTTGTA 58.029 39.130 0.00 0.00 0.00 2.41
402 403 4.998672 TGTAATTTCGGTCTGGGTTTGTAG 59.001 41.667 0.00 0.00 0.00 2.74
403 404 2.554370 TTTCGGTCTGGGTTTGTAGG 57.446 50.000 0.00 0.00 0.00 3.18
404 405 1.719529 TTCGGTCTGGGTTTGTAGGA 58.280 50.000 0.00 0.00 0.00 2.94
405 406 0.971386 TCGGTCTGGGTTTGTAGGAC 59.029 55.000 0.00 0.00 0.00 3.85
406 407 0.974383 CGGTCTGGGTTTGTAGGACT 59.026 55.000 0.00 0.00 0.00 3.85
407 408 1.346722 CGGTCTGGGTTTGTAGGACTT 59.653 52.381 0.00 0.00 0.00 3.01
408 409 2.779506 GGTCTGGGTTTGTAGGACTTG 58.220 52.381 0.00 0.00 0.00 3.16
409 410 2.552373 GGTCTGGGTTTGTAGGACTTGG 60.552 54.545 0.00 0.00 0.00 3.61
410 411 2.105993 GTCTGGGTTTGTAGGACTTGGT 59.894 50.000 0.00 0.00 0.00 3.67
411 412 2.105821 TCTGGGTTTGTAGGACTTGGTG 59.894 50.000 0.00 0.00 0.00 4.17
412 413 2.105821 CTGGGTTTGTAGGACTTGGTGA 59.894 50.000 0.00 0.00 0.00 4.02
413 414 2.714250 TGGGTTTGTAGGACTTGGTGAT 59.286 45.455 0.00 0.00 0.00 3.06
414 415 3.139397 TGGGTTTGTAGGACTTGGTGATT 59.861 43.478 0.00 0.00 0.00 2.57
415 416 4.351407 TGGGTTTGTAGGACTTGGTGATTA 59.649 41.667 0.00 0.00 0.00 1.75
416 417 4.698780 GGGTTTGTAGGACTTGGTGATTAC 59.301 45.833 0.00 0.00 0.00 1.89
417 418 5.514310 GGGTTTGTAGGACTTGGTGATTACT 60.514 44.000 0.00 0.00 0.00 2.24
418 419 5.411669 GGTTTGTAGGACTTGGTGATTACTG 59.588 44.000 0.00 0.00 0.00 2.74
419 420 6.228258 GTTTGTAGGACTTGGTGATTACTGA 58.772 40.000 0.00 0.00 0.00 3.41
420 421 6.620877 TTGTAGGACTTGGTGATTACTGAT 57.379 37.500 0.00 0.00 0.00 2.90
421 422 7.727578 TTGTAGGACTTGGTGATTACTGATA 57.272 36.000 0.00 0.00 0.00 2.15
422 423 7.727578 TGTAGGACTTGGTGATTACTGATAA 57.272 36.000 0.00 0.00 0.00 1.75
423 424 8.319057 TGTAGGACTTGGTGATTACTGATAAT 57.681 34.615 0.00 0.00 33.47 1.28
424 425 8.204160 TGTAGGACTTGGTGATTACTGATAATG 58.796 37.037 0.00 0.00 30.77 1.90
425 426 6.595682 AGGACTTGGTGATTACTGATAATGG 58.404 40.000 0.00 0.00 30.77 3.16
426 427 6.386927 AGGACTTGGTGATTACTGATAATGGA 59.613 38.462 0.00 0.00 30.77 3.41
427 428 7.054124 GGACTTGGTGATTACTGATAATGGAA 58.946 38.462 0.00 0.00 30.77 3.53
428 429 7.556275 GGACTTGGTGATTACTGATAATGGAAA 59.444 37.037 0.00 0.00 30.77 3.13
429 430 9.125026 GACTTGGTGATTACTGATAATGGAAAT 57.875 33.333 0.00 0.00 30.77 2.17
430 431 9.125026 ACTTGGTGATTACTGATAATGGAAATC 57.875 33.333 0.00 0.00 30.77 2.17
431 432 7.728847 TGGTGATTACTGATAATGGAAATCG 57.271 36.000 0.00 0.00 30.77 3.34
432 433 6.710295 TGGTGATTACTGATAATGGAAATCGG 59.290 38.462 0.00 0.00 36.08 4.18
433 434 6.934645 GGTGATTACTGATAATGGAAATCGGA 59.065 38.462 0.00 0.00 34.44 4.55
434 435 7.118390 GGTGATTACTGATAATGGAAATCGGAG 59.882 40.741 0.00 0.00 34.44 4.63
435 436 7.872993 GTGATTACTGATAATGGAAATCGGAGA 59.127 37.037 0.00 0.00 33.57 3.71
436 437 8.090831 TGATTACTGATAATGGAAATCGGAGAG 58.909 37.037 0.00 0.00 32.82 3.20
437 438 5.220710 ACTGATAATGGAAATCGGAGAGG 57.779 43.478 0.00 0.00 43.63 3.69
438 439 4.901849 ACTGATAATGGAAATCGGAGAGGA 59.098 41.667 0.00 0.00 43.63 3.71
439 440 5.366768 ACTGATAATGGAAATCGGAGAGGAA 59.633 40.000 0.00 0.00 43.63 3.36
440 441 6.126768 ACTGATAATGGAAATCGGAGAGGAAA 60.127 38.462 0.00 0.00 43.63 3.13
441 442 6.055588 TGATAATGGAAATCGGAGAGGAAAC 58.944 40.000 0.00 0.00 43.63 2.78
442 443 4.576330 AATGGAAATCGGAGAGGAAACT 57.424 40.909 0.00 0.00 43.63 2.66
458 459 6.850752 AGGAAACTCTCTTTTTCAACCAAA 57.149 33.333 0.00 0.00 32.90 3.28
459 460 7.239763 AGGAAACTCTCTTTTTCAACCAAAA 57.760 32.000 0.00 0.00 32.90 2.44
460 461 7.323420 AGGAAACTCTCTTTTTCAACCAAAAG 58.677 34.615 0.32 0.32 39.63 2.27
461 462 7.178451 AGGAAACTCTCTTTTTCAACCAAAAGA 59.822 33.333 8.05 8.05 45.73 2.52
462 463 7.817478 GGAAACTCTCTTTTTCAACCAAAAGAA 59.183 33.333 9.31 2.22 47.00 2.52
463 464 9.203421 GAAACTCTCTTTTTCAACCAAAAGAAA 57.797 29.630 9.31 0.00 47.00 2.52
464 465 9.554395 AAACTCTCTTTTTCAACCAAAAGAAAA 57.446 25.926 9.31 0.00 47.00 2.29
465 466 8.534333 ACTCTCTTTTTCAACCAAAAGAAAAC 57.466 30.769 9.31 0.00 47.00 2.43
466 467 8.147704 ACTCTCTTTTTCAACCAAAAGAAAACA 58.852 29.630 9.31 0.00 47.00 2.83
467 468 8.894768 TCTCTTTTTCAACCAAAAGAAAACAA 57.105 26.923 9.31 0.00 47.00 2.83
468 469 8.769891 TCTCTTTTTCAACCAAAAGAAAACAAC 58.230 29.630 9.31 0.00 47.00 3.32
469 470 8.669946 TCTTTTTCAACCAAAAGAAAACAACT 57.330 26.923 6.21 0.00 45.58 3.16
470 471 9.114952 TCTTTTTCAACCAAAAGAAAACAACTT 57.885 25.926 6.21 0.00 45.58 2.66
474 475 8.541133 TTCAACCAAAAGAAAACAACTTAAGG 57.459 30.769 7.53 0.00 0.00 2.69
475 476 6.592220 TCAACCAAAAGAAAACAACTTAAGGC 59.408 34.615 7.53 0.00 0.00 4.35
476 477 5.106442 ACCAAAAGAAAACAACTTAAGGCG 58.894 37.500 7.53 0.00 0.00 5.52
477 478 5.106442 CCAAAAGAAAACAACTTAAGGCGT 58.894 37.500 7.53 0.07 0.00 5.68
525 526 3.183754 TGATGTAATTGTAGTGACGCGG 58.816 45.455 12.47 0.00 0.00 6.46
530 531 3.513680 AATTGTAGTGACGCGGTGATA 57.486 42.857 12.47 0.00 0.00 2.15
533 534 3.513680 TGTAGTGACGCGGTGATATTT 57.486 42.857 12.47 0.00 0.00 1.40
558 559 8.089115 TGAACGATACACACAAATCATGTTTA 57.911 30.769 0.00 0.00 41.46 2.01
577 579 6.480763 TGTTTATTGAATCTTGGTAGCTCCA 58.519 36.000 0.00 0.00 45.60 3.86
626 631 1.202076 GCTGCGCATGTCTAACCTTTC 60.202 52.381 12.24 0.00 0.00 2.62
640 646 6.715264 GTCTAACCTTTCTCCTGAATTTTCCA 59.285 38.462 0.00 0.00 31.56 3.53
714 738 3.221222 GCCTCATCTGGGCTACGT 58.779 61.111 0.00 0.00 45.57 3.57
744 768 1.004440 GCTCCAGGACGACTTGCTT 60.004 57.895 0.00 0.00 0.00 3.91
815 842 3.625897 CACCTGTCGTCCCTGGCA 61.626 66.667 0.00 0.00 0.00 4.92
875 905 4.082523 CCACCCGAGCACCGACAT 62.083 66.667 0.00 0.00 41.76 3.06
954 984 0.465824 GATTGGCTGATCCTGCTGCT 60.466 55.000 0.00 0.00 35.26 4.24
1041 1071 1.194781 ACGGCCACCTCATCTTCTGT 61.195 55.000 2.24 0.00 0.00 3.41
1104 1134 1.531602 GGTTGTGCCTCCTTGCCTT 60.532 57.895 0.00 0.00 0.00 4.35
1127 1157 2.802816 AGTCAGACAACTTCATTCGCAC 59.197 45.455 2.66 0.00 0.00 5.34
1136 1166 2.283298 CTTCATTCGCACCAGCTATGT 58.717 47.619 0.00 0.00 39.10 2.29
1194 1224 4.379243 CTTGTCGGCAGCGGAGGT 62.379 66.667 2.23 0.00 41.48 3.85
1245 1275 3.262420 CTCTTGGTTGGAACACTATCCG 58.738 50.000 0.00 0.00 42.76 4.18
1276 1306 8.704849 TCCTTTTCTTAGGATTGAACAAATCA 57.295 30.769 0.00 0.00 45.69 2.57
1353 1383 2.554032 ACAATTTTCGCCCAGTCTCTTG 59.446 45.455 0.00 0.00 0.00 3.02
1377 1407 7.250569 TGATTCAGAAGTTTGAAGTTGTGTTC 58.749 34.615 7.91 7.36 40.16 3.18
1437 1467 0.752054 AAACATGGCTTGTGGTGTGG 59.248 50.000 6.80 0.00 38.99 4.17
1483 1516 0.821301 GGCAGCAGGAAGGATAAGCC 60.821 60.000 0.00 0.00 0.00 4.35
1522 1555 2.448705 GCCTTCAAGCTCGAGTCGC 61.449 63.158 15.13 0.00 0.00 5.19
1703 1736 2.426122 GAACAACCTTGGGCTGCAGC 62.426 60.000 30.88 30.88 41.14 5.25
1716 1749 2.319011 CTGCAGCGCAACTATGGCAG 62.319 60.000 11.47 12.51 42.14 4.85
1751 1784 2.900528 CGACAAGTTCGTGGCTCTT 58.099 52.632 0.00 0.00 43.24 2.85
1843 1877 2.620115 CAGCAATGATCTTACGGCCATT 59.380 45.455 2.24 0.00 0.00 3.16
1850 1884 0.906066 TCTTACGGCCATTGCAGGTA 59.094 50.000 2.24 0.00 40.13 3.08
2033 2074 6.940867 GTGGGATTATAAGGGACCTTATGTTC 59.059 42.308 26.31 21.55 45.56 3.18
2043 2084 6.890293 AGGGACCTTATGTTCTATTTCTCAC 58.110 40.000 0.00 0.00 0.00 3.51
2098 2162 4.083565 GGCCACTTGATAACTTGGGTTAA 58.916 43.478 0.00 0.00 40.69 2.01
2141 2216 1.273327 GGTCTGACCCCAAAATGCAAG 59.727 52.381 16.14 0.00 30.04 4.01
2166 2241 6.058553 TCCTAATACCTACTCGCTAGCATA 57.941 41.667 16.45 0.55 0.00 3.14
2229 2304 5.632347 GCTGTTCTTCATCTTTTCATGTTGG 59.368 40.000 0.00 0.00 0.00 3.77
2258 2333 5.765182 ACTTGTGCTGTCTTTATTTAGTGCT 59.235 36.000 0.00 0.00 0.00 4.40
2387 2463 3.493129 TCTTTCTCATCGTGTTTCGGTTG 59.507 43.478 0.00 0.00 40.32 3.77
2450 2526 2.883026 AGCTAGTAGGGCATAGTCCAG 58.117 52.381 0.00 0.00 0.00 3.86
2488 2564 0.744414 CGTGGGATGGAATGAACGCT 60.744 55.000 0.00 0.00 0.00 5.07
2501 2577 3.300934 AACGCTGAGGATCGCTGCA 62.301 57.895 13.63 0.00 38.61 4.41
2518 2594 0.592637 GCAAGCATTTTGTTTGGGCC 59.407 50.000 0.00 0.00 38.72 5.80
2523 2599 2.065512 GCATTTTGTTTGGGCCGTTAG 58.934 47.619 0.00 0.00 0.00 2.34
2669 4629 7.806690 TGTGTTGTCATTTCATACTAAGAAGC 58.193 34.615 0.00 0.00 0.00 3.86
2672 4632 7.119699 TGTTGTCATTTCATACTAAGAAGCCTG 59.880 37.037 0.00 0.00 0.00 4.85
2711 4671 9.583765 ACTCTTACCTTTCATACGATTTTCTAC 57.416 33.333 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.304794 GCGGTAGATAGACAGGCTGTTAG 60.305 52.174 22.98 6.70 0.00 2.34
62 63 2.621998 GCGGTAGATAGACAGGCTGTTA 59.378 50.000 22.98 15.46 0.00 2.41
63 64 1.409427 GCGGTAGATAGACAGGCTGTT 59.591 52.381 22.98 13.79 0.00 3.16
70 71 0.394762 ACACGGGCGGTAGATAGACA 60.395 55.000 0.00 0.00 0.00 3.41
83 84 2.071540 CATAGATGCATGCTACACGGG 58.928 52.381 20.33 0.00 0.00 5.28
84 85 2.759191 ACATAGATGCATGCTACACGG 58.241 47.619 20.33 7.28 0.00 4.94
85 86 4.550422 AGTACATAGATGCATGCTACACG 58.450 43.478 20.33 5.68 0.00 4.49
86 87 4.926238 GGAGTACATAGATGCATGCTACAC 59.074 45.833 20.33 9.25 0.00 2.90
87 88 4.021104 GGGAGTACATAGATGCATGCTACA 60.021 45.833 20.33 0.00 0.00 2.74
88 89 4.221703 AGGGAGTACATAGATGCATGCTAC 59.778 45.833 20.33 10.84 0.00 3.58
90 91 3.246301 AGGGAGTACATAGATGCATGCT 58.754 45.455 20.33 4.11 0.00 3.79
91 92 3.260380 AGAGGGAGTACATAGATGCATGC 59.740 47.826 11.82 11.82 0.00 4.06
92 93 4.282957 ACAGAGGGAGTACATAGATGCATG 59.717 45.833 2.46 0.00 0.00 4.06
94 95 3.916035 ACAGAGGGAGTACATAGATGCA 58.084 45.455 0.00 0.00 0.00 3.96
95 96 4.262249 GGAACAGAGGGAGTACATAGATGC 60.262 50.000 0.00 0.00 0.00 3.91
96 97 4.895889 TGGAACAGAGGGAGTACATAGATG 59.104 45.833 0.00 0.00 0.00 2.90
97 98 5.144159 TGGAACAGAGGGAGTACATAGAT 57.856 43.478 0.00 0.00 0.00 1.98
98 99 4.603094 TGGAACAGAGGGAGTACATAGA 57.397 45.455 0.00 0.00 0.00 1.98
99 100 5.677319 TTTGGAACAGAGGGAGTACATAG 57.323 43.478 0.00 0.00 42.39 2.23
100 101 6.636454 ATTTTGGAACAGAGGGAGTACATA 57.364 37.500 0.00 0.00 42.39 2.29
101 102 4.993705 TTTTGGAACAGAGGGAGTACAT 57.006 40.909 0.00 0.00 42.39 2.29
102 103 4.993705 ATTTTGGAACAGAGGGAGTACA 57.006 40.909 0.00 0.00 42.39 2.90
103 104 6.295719 TCTATTTTGGAACAGAGGGAGTAC 57.704 41.667 0.00 0.00 42.39 2.73
104 105 6.672218 TCATCTATTTTGGAACAGAGGGAGTA 59.328 38.462 0.00 0.00 42.39 2.59
105 106 5.488919 TCATCTATTTTGGAACAGAGGGAGT 59.511 40.000 0.00 0.00 42.39 3.85
106 107 5.819901 GTCATCTATTTTGGAACAGAGGGAG 59.180 44.000 0.00 0.00 42.39 4.30
107 108 5.488919 AGTCATCTATTTTGGAACAGAGGGA 59.511 40.000 0.00 0.00 42.39 4.20
108 109 5.749462 AGTCATCTATTTTGGAACAGAGGG 58.251 41.667 0.00 0.00 42.39 4.30
109 110 6.409704 TGAGTCATCTATTTTGGAACAGAGG 58.590 40.000 0.00 0.00 42.39 3.69
110 111 7.605691 AGTTGAGTCATCTATTTTGGAACAGAG 59.394 37.037 1.70 0.00 42.39 3.35
111 112 7.453393 AGTTGAGTCATCTATTTTGGAACAGA 58.547 34.615 1.70 0.00 42.39 3.41
112 113 7.678947 AGTTGAGTCATCTATTTTGGAACAG 57.321 36.000 1.70 0.00 42.39 3.16
113 114 9.219603 CTAAGTTGAGTCATCTATTTTGGAACA 57.780 33.333 4.14 0.00 0.00 3.18
114 115 9.220767 ACTAAGTTGAGTCATCTATTTTGGAAC 57.779 33.333 4.14 0.00 0.00 3.62
116 117 9.871238 GTACTAAGTTGAGTCATCTATTTTGGA 57.129 33.333 4.14 0.00 0.00 3.53
117 118 9.877178 AGTACTAAGTTGAGTCATCTATTTTGG 57.123 33.333 4.14 0.00 0.00 3.28
154 155 9.877178 CCAAAATAGATGACTCAACTTAGTACT 57.123 33.333 0.00 0.00 0.00 2.73
155 156 9.871238 TCCAAAATAGATGACTCAACTTAGTAC 57.129 33.333 0.00 0.00 0.00 2.73
157 158 9.220767 GTTCCAAAATAGATGACTCAACTTAGT 57.779 33.333 0.00 0.00 0.00 2.24
158 159 8.383619 CGTTCCAAAATAGATGACTCAACTTAG 58.616 37.037 0.00 0.00 0.00 2.18
159 160 7.333423 CCGTTCCAAAATAGATGACTCAACTTA 59.667 37.037 0.00 0.00 0.00 2.24
160 161 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
161 162 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
162 163 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
163 164 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
164 165 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
165 166 5.294552 CCTTCCGTTCCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
166 167 5.045869 TCCTTCCGTTCCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
167 168 5.183228 TCCTTCCGTTCCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
168 169 5.045869 ACTCCTTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
169 170 5.186198 ACTCCTTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
170 171 5.437191 ACTCCTTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
171 172 4.903045 ACTCCTTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
172 173 5.731591 ACTACTCCTTCCGTTCCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
173 174 5.750352 ACTACTCCTTCCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
174 175 4.635699 ACTACTCCTTCCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
175 176 4.131596 CAACTACTCCTTCCGTTCCAAAA 58.868 43.478 0.00 0.00 0.00 2.44
176 177 3.135167 ACAACTACTCCTTCCGTTCCAAA 59.865 43.478 0.00 0.00 0.00 3.28
177 178 2.701951 ACAACTACTCCTTCCGTTCCAA 59.298 45.455 0.00 0.00 0.00 3.53
178 179 2.322658 ACAACTACTCCTTCCGTTCCA 58.677 47.619 0.00 0.00 0.00 3.53
179 180 3.397849 AACAACTACTCCTTCCGTTCC 57.602 47.619 0.00 0.00 0.00 3.62
180 181 7.430992 AAATTAACAACTACTCCTTCCGTTC 57.569 36.000 0.00 0.00 0.00 3.95
181 182 7.812690 AAAATTAACAACTACTCCTTCCGTT 57.187 32.000 0.00 0.00 0.00 4.44
182 183 9.511272 AATAAAATTAACAACTACTCCTTCCGT 57.489 29.630 0.00 0.00 0.00 4.69
183 184 9.983804 GAATAAAATTAACAACTACTCCTTCCG 57.016 33.333 0.00 0.00 0.00 4.30
228 229 2.037251 ACACACACAGTCACCTATCACC 59.963 50.000 0.00 0.00 0.00 4.02
233 234 4.647853 AGTCTAAACACACACAGTCACCTA 59.352 41.667 0.00 0.00 0.00 3.08
234 235 3.451178 AGTCTAAACACACACAGTCACCT 59.549 43.478 0.00 0.00 0.00 4.00
235 236 3.793559 AGTCTAAACACACACAGTCACC 58.206 45.455 0.00 0.00 0.00 4.02
236 237 6.040878 ACTAAGTCTAAACACACACAGTCAC 58.959 40.000 0.00 0.00 0.00 3.67
237 238 6.216801 ACTAAGTCTAAACACACACAGTCA 57.783 37.500 0.00 0.00 0.00 3.41
238 239 7.491696 AGAAACTAAGTCTAAACACACACAGTC 59.508 37.037 0.00 0.00 0.00 3.51
239 240 7.328737 AGAAACTAAGTCTAAACACACACAGT 58.671 34.615 0.00 0.00 0.00 3.55
240 241 7.772332 AGAAACTAAGTCTAAACACACACAG 57.228 36.000 0.00 0.00 0.00 3.66
241 242 8.556213 AAAGAAACTAAGTCTAAACACACACA 57.444 30.769 0.00 0.00 0.00 3.72
242 243 9.274065 CAAAAGAAACTAAGTCTAAACACACAC 57.726 33.333 0.00 0.00 0.00 3.82
243 244 7.966204 GCAAAAGAAACTAAGTCTAAACACACA 59.034 33.333 0.00 0.00 0.00 3.72
244 245 7.966204 TGCAAAAGAAACTAAGTCTAAACACAC 59.034 33.333 0.00 0.00 0.00 3.82
245 246 8.046294 TGCAAAAGAAACTAAGTCTAAACACA 57.954 30.769 0.00 0.00 0.00 3.72
246 247 7.644157 CCTGCAAAAGAAACTAAGTCTAAACAC 59.356 37.037 0.00 0.00 0.00 3.32
247 248 7.681065 GCCTGCAAAAGAAACTAAGTCTAAACA 60.681 37.037 0.00 0.00 0.00 2.83
248 249 6.637254 GCCTGCAAAAGAAACTAAGTCTAAAC 59.363 38.462 0.00 0.00 0.00 2.01
249 250 6.546034 AGCCTGCAAAAGAAACTAAGTCTAAA 59.454 34.615 0.00 0.00 0.00 1.85
250 251 6.017109 CAGCCTGCAAAAGAAACTAAGTCTAA 60.017 38.462 0.00 0.00 0.00 2.10
251 252 5.470098 CAGCCTGCAAAAGAAACTAAGTCTA 59.530 40.000 0.00 0.00 0.00 2.59
252 253 4.276926 CAGCCTGCAAAAGAAACTAAGTCT 59.723 41.667 0.00 0.00 0.00 3.24
253 254 4.540824 CAGCCTGCAAAAGAAACTAAGTC 58.459 43.478 0.00 0.00 0.00 3.01
254 255 3.319122 CCAGCCTGCAAAAGAAACTAAGT 59.681 43.478 0.00 0.00 0.00 2.24
255 256 3.305608 CCCAGCCTGCAAAAGAAACTAAG 60.306 47.826 0.00 0.00 0.00 2.18
256 257 2.627699 CCCAGCCTGCAAAAGAAACTAA 59.372 45.455 0.00 0.00 0.00 2.24
257 258 2.158534 TCCCAGCCTGCAAAAGAAACTA 60.159 45.455 0.00 0.00 0.00 2.24
258 259 1.043022 CCCAGCCTGCAAAAGAAACT 58.957 50.000 0.00 0.00 0.00 2.66
259 260 1.000171 CTCCCAGCCTGCAAAAGAAAC 60.000 52.381 0.00 0.00 0.00 2.78
260 261 1.331214 CTCCCAGCCTGCAAAAGAAA 58.669 50.000 0.00 0.00 0.00 2.52
261 262 0.540365 CCTCCCAGCCTGCAAAAGAA 60.540 55.000 0.00 0.00 0.00 2.52
262 263 1.075482 CCTCCCAGCCTGCAAAAGA 59.925 57.895 0.00 0.00 0.00 2.52
263 264 0.829182 AACCTCCCAGCCTGCAAAAG 60.829 55.000 0.00 0.00 0.00 2.27
264 265 1.114722 CAACCTCCCAGCCTGCAAAA 61.115 55.000 0.00 0.00 0.00 2.44
265 266 1.531365 CAACCTCCCAGCCTGCAAA 60.531 57.895 0.00 0.00 0.00 3.68
266 267 2.115910 CAACCTCCCAGCCTGCAA 59.884 61.111 0.00 0.00 0.00 4.08
267 268 4.666253 GCAACCTCCCAGCCTGCA 62.666 66.667 0.00 0.00 33.19 4.41
268 269 4.666253 TGCAACCTCCCAGCCTGC 62.666 66.667 0.00 0.00 0.00 4.85
269 270 1.304713 ATTGCAACCTCCCAGCCTG 60.305 57.895 0.00 0.00 0.00 4.85
270 271 1.000396 GATTGCAACCTCCCAGCCT 60.000 57.895 0.00 0.00 0.00 4.58
271 272 2.054453 GGATTGCAACCTCCCAGCC 61.054 63.158 0.00 0.00 0.00 4.85
272 273 1.000396 AGGATTGCAACCTCCCAGC 60.000 57.895 14.25 0.00 31.43 4.85
273 274 0.329261 TCAGGATTGCAACCTCCCAG 59.671 55.000 14.25 8.62 35.35 4.45
274 275 1.002069 ATCAGGATTGCAACCTCCCA 58.998 50.000 14.25 3.63 35.35 4.37
275 276 1.064463 TCATCAGGATTGCAACCTCCC 60.064 52.381 14.25 7.93 35.35 4.30
276 277 2.295885 CTCATCAGGATTGCAACCTCC 58.704 52.381 15.13 13.05 35.35 4.30
277 278 2.996631 ACTCATCAGGATTGCAACCTC 58.003 47.619 15.13 4.76 35.35 3.85
278 279 3.118112 CCTACTCATCAGGATTGCAACCT 60.118 47.826 0.00 8.07 38.40 3.50
279 280 3.209410 CCTACTCATCAGGATTGCAACC 58.791 50.000 0.00 5.56 34.91 3.77
280 281 3.209410 CCCTACTCATCAGGATTGCAAC 58.791 50.000 0.00 0.00 34.91 4.17
281 282 2.173356 CCCCTACTCATCAGGATTGCAA 59.827 50.000 0.00 0.00 34.91 4.08
282 283 1.770658 CCCCTACTCATCAGGATTGCA 59.229 52.381 0.00 0.00 34.91 4.08
283 284 1.072965 CCCCCTACTCATCAGGATTGC 59.927 57.143 0.00 0.00 34.91 3.56
284 285 2.105477 CACCCCCTACTCATCAGGATTG 59.895 54.545 0.00 0.00 34.91 2.67
285 286 2.412591 CACCCCCTACTCATCAGGATT 58.587 52.381 0.00 0.00 34.91 3.01
286 287 2.042301 GCACCCCCTACTCATCAGGAT 61.042 57.143 0.00 0.00 34.91 3.24
287 288 0.691078 GCACCCCCTACTCATCAGGA 60.691 60.000 0.00 0.00 34.91 3.86
288 289 1.700042 GGCACCCCCTACTCATCAGG 61.700 65.000 0.00 0.00 0.00 3.86
289 290 0.692419 AGGCACCCCCTACTCATCAG 60.692 60.000 0.00 0.00 44.08 2.90
290 291 0.639943 TAGGCACCCCCTACTCATCA 59.360 55.000 0.00 0.00 44.08 3.07
291 292 1.343069 CTAGGCACCCCCTACTCATC 58.657 60.000 0.00 0.00 44.08 2.92
292 293 0.642710 ACTAGGCACCCCCTACTCAT 59.357 55.000 0.00 0.00 44.08 2.90
293 294 0.416231 AACTAGGCACCCCCTACTCA 59.584 55.000 0.00 0.00 44.08 3.41
294 295 1.485480 GAAACTAGGCACCCCCTACTC 59.515 57.143 0.00 0.00 44.08 2.59
295 296 1.581223 GAAACTAGGCACCCCCTACT 58.419 55.000 0.00 0.00 44.08 2.57
296 297 0.545171 GGAAACTAGGCACCCCCTAC 59.455 60.000 0.00 0.00 44.08 3.18
297 298 0.420272 AGGAAACTAGGCACCCCCTA 59.580 55.000 0.00 0.00 44.08 3.53
298 299 1.904865 GTAGGAAACTAGGCACCCCCT 60.905 57.143 0.00 0.00 45.49 4.79
299 300 0.545171 GTAGGAAACTAGGCACCCCC 59.455 60.000 0.00 0.00 45.49 5.40
300 301 1.282382 TGTAGGAAACTAGGCACCCC 58.718 55.000 0.00 0.00 45.49 4.95
301 302 3.279434 CAATGTAGGAAACTAGGCACCC 58.721 50.000 0.00 0.00 45.49 4.61
302 303 3.951663 ACAATGTAGGAAACTAGGCACC 58.048 45.455 0.00 0.00 45.49 5.01
303 304 5.472137 TGAAACAATGTAGGAAACTAGGCAC 59.528 40.000 0.00 0.00 45.49 5.01
304 305 5.626142 TGAAACAATGTAGGAAACTAGGCA 58.374 37.500 0.00 0.00 45.49 4.75
305 306 5.123979 CCTGAAACAATGTAGGAAACTAGGC 59.876 44.000 0.00 0.00 45.49 3.93
306 307 5.648092 CCCTGAAACAATGTAGGAAACTAGG 59.352 44.000 2.38 0.00 45.49 3.02
307 308 5.648092 CCCCTGAAACAATGTAGGAAACTAG 59.352 44.000 2.38 0.00 45.49 2.57
308 309 5.566469 CCCCTGAAACAATGTAGGAAACTA 58.434 41.667 2.38 0.00 43.67 2.24
310 311 3.056821 GCCCCTGAAACAATGTAGGAAAC 60.057 47.826 2.38 0.00 31.91 2.78
311 312 3.161866 GCCCCTGAAACAATGTAGGAAA 58.838 45.455 2.38 0.00 31.91 3.13
312 313 2.802719 GCCCCTGAAACAATGTAGGAA 58.197 47.619 2.38 0.00 31.91 3.36
313 314 1.339631 CGCCCCTGAAACAATGTAGGA 60.340 52.381 2.38 0.00 31.91 2.94
314 315 1.094785 CGCCCCTGAAACAATGTAGG 58.905 55.000 0.00 0.00 0.00 3.18
315 316 0.451783 GCGCCCCTGAAACAATGTAG 59.548 55.000 0.00 0.00 0.00 2.74
316 317 1.302383 CGCGCCCCTGAAACAATGTA 61.302 55.000 0.00 0.00 0.00 2.29
317 318 2.625823 CGCGCCCCTGAAACAATGT 61.626 57.895 0.00 0.00 0.00 2.71
318 319 2.179018 CGCGCCCCTGAAACAATG 59.821 61.111 0.00 0.00 0.00 2.82
319 320 2.837031 ATCCGCGCCCCTGAAACAAT 62.837 55.000 0.00 0.00 0.00 2.71
320 321 3.561120 ATCCGCGCCCCTGAAACAA 62.561 57.895 0.00 0.00 0.00 2.83
321 322 3.969250 GATCCGCGCCCCTGAAACA 62.969 63.158 0.00 0.00 0.00 2.83
322 323 3.202706 GATCCGCGCCCCTGAAAC 61.203 66.667 0.00 0.00 0.00 2.78
323 324 2.550699 AATGATCCGCGCCCCTGAAA 62.551 55.000 0.00 0.00 0.00 2.69
324 325 3.042733 AATGATCCGCGCCCCTGAA 62.043 57.895 0.00 0.00 0.00 3.02
325 326 3.479203 AATGATCCGCGCCCCTGA 61.479 61.111 0.00 0.00 0.00 3.86
326 327 3.282157 CAATGATCCGCGCCCCTG 61.282 66.667 0.00 0.00 0.00 4.45
327 328 4.569180 CCAATGATCCGCGCCCCT 62.569 66.667 0.00 0.00 0.00 4.79
328 329 3.850098 ATCCAATGATCCGCGCCCC 62.850 63.158 0.00 0.00 0.00 5.80
329 330 2.281761 ATCCAATGATCCGCGCCC 60.282 61.111 0.00 0.00 0.00 6.13
330 331 3.257933 GATCCAATGATCCGCGCC 58.742 61.111 0.00 0.00 41.37 6.53
336 337 3.744942 CCACATCGACAGATCCAATGATC 59.255 47.826 0.00 0.00 46.52 2.92
337 338 3.135348 ACCACATCGACAGATCCAATGAT 59.865 43.478 0.00 0.00 34.23 2.45
338 339 2.501316 ACCACATCGACAGATCCAATGA 59.499 45.455 0.00 0.00 34.23 2.57
339 340 2.610833 CACCACATCGACAGATCCAATG 59.389 50.000 0.00 0.00 34.23 2.82
340 341 2.237143 ACACCACATCGACAGATCCAAT 59.763 45.455 0.00 0.00 34.23 3.16
341 342 1.623311 ACACCACATCGACAGATCCAA 59.377 47.619 0.00 0.00 34.23 3.53
342 343 1.266178 ACACCACATCGACAGATCCA 58.734 50.000 0.00 0.00 34.23 3.41
343 344 2.223829 CCTACACCACATCGACAGATCC 60.224 54.545 0.00 0.00 34.23 3.36
344 345 2.427453 ACCTACACCACATCGACAGATC 59.573 50.000 0.00 0.00 34.23 2.75
345 346 2.427453 GACCTACACCACATCGACAGAT 59.573 50.000 0.00 0.00 37.65 2.90
346 347 1.816835 GACCTACACCACATCGACAGA 59.183 52.381 0.00 0.00 0.00 3.41
347 348 1.544246 TGACCTACACCACATCGACAG 59.456 52.381 0.00 0.00 0.00 3.51
348 349 1.544246 CTGACCTACACCACATCGACA 59.456 52.381 0.00 0.00 0.00 4.35
349 350 1.736032 GCTGACCTACACCACATCGAC 60.736 57.143 0.00 0.00 0.00 4.20
350 351 0.530744 GCTGACCTACACCACATCGA 59.469 55.000 0.00 0.00 0.00 3.59
351 352 0.246360 TGCTGACCTACACCACATCG 59.754 55.000 0.00 0.00 0.00 3.84
352 353 2.009042 GCTGCTGACCTACACCACATC 61.009 57.143 0.00 0.00 0.00 3.06
353 354 0.036010 GCTGCTGACCTACACCACAT 60.036 55.000 0.00 0.00 0.00 3.21
354 355 1.371183 GCTGCTGACCTACACCACA 59.629 57.895 0.00 0.00 0.00 4.17
355 356 1.738099 CGCTGCTGACCTACACCAC 60.738 63.158 0.00 0.00 0.00 4.16
356 357 1.754380 AACGCTGCTGACCTACACCA 61.754 55.000 0.00 0.00 0.00 4.17
357 358 0.245539 TAACGCTGCTGACCTACACC 59.754 55.000 0.00 0.00 0.00 4.16
358 359 2.159226 AGATAACGCTGCTGACCTACAC 60.159 50.000 0.00 0.00 0.00 2.90
359 360 2.100197 AGATAACGCTGCTGACCTACA 58.900 47.619 0.00 0.00 0.00 2.74
360 361 2.159226 ACAGATAACGCTGCTGACCTAC 60.159 50.000 0.00 0.00 39.51 3.18
361 362 2.100197 ACAGATAACGCTGCTGACCTA 58.900 47.619 0.00 0.00 39.51 3.08
362 363 0.898320 ACAGATAACGCTGCTGACCT 59.102 50.000 0.00 0.00 39.51 3.85
363 364 2.579207 TACAGATAACGCTGCTGACC 57.421 50.000 0.00 0.00 39.51 4.02
364 365 5.470845 AAATTACAGATAACGCTGCTGAC 57.529 39.130 0.00 0.00 39.51 3.51
365 366 4.267690 CGAAATTACAGATAACGCTGCTGA 59.732 41.667 0.00 0.00 39.51 4.26
366 367 4.508971 CGAAATTACAGATAACGCTGCTG 58.491 43.478 0.00 0.00 39.51 4.41
367 368 3.555956 CCGAAATTACAGATAACGCTGCT 59.444 43.478 0.00 0.00 39.51 4.24
368 369 3.308866 ACCGAAATTACAGATAACGCTGC 59.691 43.478 0.00 0.00 39.51 5.25
369 370 4.804139 AGACCGAAATTACAGATAACGCTG 59.196 41.667 0.00 0.00 41.63 5.18
370 371 4.804139 CAGACCGAAATTACAGATAACGCT 59.196 41.667 0.00 0.00 0.00 5.07
371 372 4.025979 CCAGACCGAAATTACAGATAACGC 60.026 45.833 0.00 0.00 0.00 4.84
372 373 4.506654 CCCAGACCGAAATTACAGATAACG 59.493 45.833 0.00 0.00 0.00 3.18
373 374 5.425630 ACCCAGACCGAAATTACAGATAAC 58.574 41.667 0.00 0.00 0.00 1.89
374 375 5.687166 ACCCAGACCGAAATTACAGATAA 57.313 39.130 0.00 0.00 0.00 1.75
375 376 5.687166 AACCCAGACCGAAATTACAGATA 57.313 39.130 0.00 0.00 0.00 1.98
376 377 4.569719 AACCCAGACCGAAATTACAGAT 57.430 40.909 0.00 0.00 0.00 2.90
377 378 4.069304 CAAACCCAGACCGAAATTACAGA 58.931 43.478 0.00 0.00 0.00 3.41
378 379 3.818773 ACAAACCCAGACCGAAATTACAG 59.181 43.478 0.00 0.00 0.00 2.74
379 380 3.822940 ACAAACCCAGACCGAAATTACA 58.177 40.909 0.00 0.00 0.00 2.41
380 381 4.393990 CCTACAAACCCAGACCGAAATTAC 59.606 45.833 0.00 0.00 0.00 1.89
381 382 4.286549 TCCTACAAACCCAGACCGAAATTA 59.713 41.667 0.00 0.00 0.00 1.40
382 383 3.073356 TCCTACAAACCCAGACCGAAATT 59.927 43.478 0.00 0.00 0.00 1.82
383 384 2.640826 TCCTACAAACCCAGACCGAAAT 59.359 45.455 0.00 0.00 0.00 2.17
384 385 2.048601 TCCTACAAACCCAGACCGAAA 58.951 47.619 0.00 0.00 0.00 3.46
385 386 1.345415 GTCCTACAAACCCAGACCGAA 59.655 52.381 0.00 0.00 0.00 4.30
386 387 0.971386 GTCCTACAAACCCAGACCGA 59.029 55.000 0.00 0.00 0.00 4.69
387 388 0.974383 AGTCCTACAAACCCAGACCG 59.026 55.000 0.00 0.00 0.00 4.79
388 389 2.552373 CCAAGTCCTACAAACCCAGACC 60.552 54.545 0.00 0.00 0.00 3.85
389 390 2.105993 ACCAAGTCCTACAAACCCAGAC 59.894 50.000 0.00 0.00 0.00 3.51
390 391 2.105821 CACCAAGTCCTACAAACCCAGA 59.894 50.000 0.00 0.00 0.00 3.86
391 392 2.105821 TCACCAAGTCCTACAAACCCAG 59.894 50.000 0.00 0.00 0.00 4.45
392 393 2.128535 TCACCAAGTCCTACAAACCCA 58.871 47.619 0.00 0.00 0.00 4.51
393 394 2.943036 TCACCAAGTCCTACAAACCC 57.057 50.000 0.00 0.00 0.00 4.11
394 395 5.411669 CAGTAATCACCAAGTCCTACAAACC 59.588 44.000 0.00 0.00 0.00 3.27
395 396 6.228258 TCAGTAATCACCAAGTCCTACAAAC 58.772 40.000 0.00 0.00 0.00 2.93
396 397 6.428083 TCAGTAATCACCAAGTCCTACAAA 57.572 37.500 0.00 0.00 0.00 2.83
397 398 6.620877 ATCAGTAATCACCAAGTCCTACAA 57.379 37.500 0.00 0.00 0.00 2.41
398 399 7.727578 TTATCAGTAATCACCAAGTCCTACA 57.272 36.000 0.00 0.00 0.00 2.74
399 400 7.657761 CCATTATCAGTAATCACCAAGTCCTAC 59.342 40.741 0.00 0.00 0.00 3.18
400 401 7.567250 TCCATTATCAGTAATCACCAAGTCCTA 59.433 37.037 0.00 0.00 0.00 2.94
401 402 6.386927 TCCATTATCAGTAATCACCAAGTCCT 59.613 38.462 0.00 0.00 0.00 3.85
402 403 6.591935 TCCATTATCAGTAATCACCAAGTCC 58.408 40.000 0.00 0.00 0.00 3.85
403 404 8.506168 TTTCCATTATCAGTAATCACCAAGTC 57.494 34.615 0.00 0.00 0.00 3.01
404 405 9.125026 GATTTCCATTATCAGTAATCACCAAGT 57.875 33.333 0.00 0.00 0.00 3.16
405 406 8.285394 CGATTTCCATTATCAGTAATCACCAAG 58.715 37.037 0.00 0.00 0.00 3.61
406 407 7.228507 CCGATTTCCATTATCAGTAATCACCAA 59.771 37.037 0.00 0.00 0.00 3.67
407 408 6.710295 CCGATTTCCATTATCAGTAATCACCA 59.290 38.462 0.00 0.00 0.00 4.17
408 409 6.934645 TCCGATTTCCATTATCAGTAATCACC 59.065 38.462 0.00 0.00 0.00 4.02
409 410 7.872993 TCTCCGATTTCCATTATCAGTAATCAC 59.127 37.037 0.00 0.00 0.00 3.06
410 411 7.962441 TCTCCGATTTCCATTATCAGTAATCA 58.038 34.615 0.00 0.00 0.00 2.57
411 412 7.547370 CCTCTCCGATTTCCATTATCAGTAATC 59.453 40.741 0.00 0.00 0.00 1.75
412 413 7.235606 TCCTCTCCGATTTCCATTATCAGTAAT 59.764 37.037 0.00 0.00 0.00 1.89
413 414 6.553476 TCCTCTCCGATTTCCATTATCAGTAA 59.447 38.462 0.00 0.00 0.00 2.24
414 415 6.075315 TCCTCTCCGATTTCCATTATCAGTA 58.925 40.000 0.00 0.00 0.00 2.74
415 416 4.901849 TCCTCTCCGATTTCCATTATCAGT 59.098 41.667 0.00 0.00 0.00 3.41
416 417 5.474578 TCCTCTCCGATTTCCATTATCAG 57.525 43.478 0.00 0.00 0.00 2.90
417 418 5.887214 TTCCTCTCCGATTTCCATTATCA 57.113 39.130 0.00 0.00 0.00 2.15
418 419 6.292150 AGTTTCCTCTCCGATTTCCATTATC 58.708 40.000 0.00 0.00 0.00 1.75
419 420 6.100424 AGAGTTTCCTCTCCGATTTCCATTAT 59.900 38.462 0.00 0.00 45.08 1.28
420 421 5.425539 AGAGTTTCCTCTCCGATTTCCATTA 59.574 40.000 0.00 0.00 45.08 1.90
421 422 4.226168 AGAGTTTCCTCTCCGATTTCCATT 59.774 41.667 0.00 0.00 45.08 3.16
422 423 3.777522 AGAGTTTCCTCTCCGATTTCCAT 59.222 43.478 0.00 0.00 45.08 3.41
423 424 3.173965 AGAGTTTCCTCTCCGATTTCCA 58.826 45.455 0.00 0.00 45.08 3.53
424 425 3.897141 AGAGTTTCCTCTCCGATTTCC 57.103 47.619 0.00 0.00 45.08 3.13
433 434 7.178451 TTTTGGTTGAAAAAGAGAGTTTCCTCT 59.822 33.333 0.00 0.00 44.84 3.69
434 435 6.451064 TTGGTTGAAAAAGAGAGTTTCCTC 57.549 37.500 0.00 0.00 34.67 3.71
435 436 6.850752 TTTGGTTGAAAAAGAGAGTTTCCT 57.149 33.333 0.00 0.00 34.67 3.36
436 437 7.320399 TCTTTTGGTTGAAAAAGAGAGTTTCC 58.680 34.615 7.78 0.00 46.26 3.13
448 449 8.994170 CCTTAAGTTGTTTTCTTTTGGTTGAAA 58.006 29.630 0.97 0.00 0.00 2.69
449 450 7.118535 GCCTTAAGTTGTTTTCTTTTGGTTGAA 59.881 33.333 0.97 0.00 0.00 2.69
450 451 6.592220 GCCTTAAGTTGTTTTCTTTTGGTTGA 59.408 34.615 0.97 0.00 0.00 3.18
451 452 6.454981 CGCCTTAAGTTGTTTTCTTTTGGTTG 60.455 38.462 0.97 0.00 0.00 3.77
452 453 5.579119 CGCCTTAAGTTGTTTTCTTTTGGTT 59.421 36.000 0.97 0.00 0.00 3.67
453 454 5.106442 CGCCTTAAGTTGTTTTCTTTTGGT 58.894 37.500 0.97 0.00 0.00 3.67
454 455 5.106442 ACGCCTTAAGTTGTTTTCTTTTGG 58.894 37.500 0.97 0.00 0.00 3.28
455 456 6.309251 TGAACGCCTTAAGTTGTTTTCTTTTG 59.691 34.615 9.99 0.00 31.14 2.44
456 457 6.391537 TGAACGCCTTAAGTTGTTTTCTTTT 58.608 32.000 9.99 0.00 31.14 2.27
457 458 5.956642 TGAACGCCTTAAGTTGTTTTCTTT 58.043 33.333 9.99 0.00 31.14 2.52
458 459 5.124936 ACTGAACGCCTTAAGTTGTTTTCTT 59.875 36.000 9.99 0.00 31.14 2.52
459 460 4.638865 ACTGAACGCCTTAAGTTGTTTTCT 59.361 37.500 9.99 0.00 31.14 2.52
460 461 4.916870 ACTGAACGCCTTAAGTTGTTTTC 58.083 39.130 9.99 3.05 31.14 2.29
461 462 4.976224 ACTGAACGCCTTAAGTTGTTTT 57.024 36.364 9.99 0.00 31.14 2.43
462 463 5.995897 AGATACTGAACGCCTTAAGTTGTTT 59.004 36.000 9.99 0.18 31.14 2.83
463 464 5.548406 AGATACTGAACGCCTTAAGTTGTT 58.452 37.500 8.77 8.77 31.14 2.83
464 465 5.148651 AGATACTGAACGCCTTAAGTTGT 57.851 39.130 0.97 0.00 31.14 3.32
465 466 6.073222 ACAAAGATACTGAACGCCTTAAGTTG 60.073 38.462 0.97 0.00 31.14 3.16
466 467 5.995897 ACAAAGATACTGAACGCCTTAAGTT 59.004 36.000 0.97 0.00 34.07 2.66
467 468 5.548406 ACAAAGATACTGAACGCCTTAAGT 58.452 37.500 0.97 0.00 0.00 2.24
468 469 6.481954 AACAAAGATACTGAACGCCTTAAG 57.518 37.500 0.00 0.00 0.00 1.85
469 470 7.966246 TTAACAAAGATACTGAACGCCTTAA 57.034 32.000 0.00 0.00 0.00 1.85
470 471 8.556213 AATTAACAAAGATACTGAACGCCTTA 57.444 30.769 0.00 0.00 0.00 2.69
471 472 7.448748 AATTAACAAAGATACTGAACGCCTT 57.551 32.000 0.00 0.00 0.00 4.35
472 473 7.448748 AAATTAACAAAGATACTGAACGCCT 57.551 32.000 0.00 0.00 0.00 5.52
473 474 9.274065 CTAAAATTAACAAAGATACTGAACGCC 57.726 33.333 0.00 0.00 0.00 5.68
474 475 9.821662 ACTAAAATTAACAAAGATACTGAACGC 57.178 29.630 0.00 0.00 0.00 4.84
509 510 3.513680 ATCACCGCGTCACTACAATTA 57.486 42.857 4.92 0.00 0.00 1.40
512 513 3.513680 AATATCACCGCGTCACTACAA 57.486 42.857 4.92 0.00 0.00 2.41
525 526 9.210426 GATTTGTGTGTATCGTTCAAATATCAC 57.790 33.333 0.00 0.00 38.34 3.06
530 531 7.592938 ACATGATTTGTGTGTATCGTTCAAAT 58.407 30.769 0.00 0.00 40.06 2.32
533 534 6.552859 AACATGATTTGTGTGTATCGTTCA 57.447 33.333 0.00 0.00 38.99 3.18
626 631 4.455533 TGTTCGACATGGAAAATTCAGGAG 59.544 41.667 0.00 0.00 0.00 3.69
640 646 1.513158 CGCTCTCCCTGTTCGACAT 59.487 57.895 0.00 0.00 0.00 3.06
710 734 3.845259 GCTCGGCCCATCCACGTA 61.845 66.667 0.00 0.00 34.01 3.57
731 755 0.250338 GGGTTGAAGCAAGTCGTCCT 60.250 55.000 0.00 0.00 0.00 3.85
744 768 0.465705 GGAGAGCGATGATGGGTTGA 59.534 55.000 0.00 0.00 0.00 3.18
815 842 2.738846 GACGTGTGTGCTGAGAAATCAT 59.261 45.455 0.00 0.00 0.00 2.45
954 984 2.173356 CAAACTGGGATAGGATGAGGCA 59.827 50.000 0.00 0.00 0.00 4.75
997 1027 1.198637 GCAGCGAAGAAAGAACATGCT 59.801 47.619 0.00 0.00 0.00 3.79
1041 1071 4.081142 ACAATGTAGAACCCATCATCGTCA 60.081 41.667 0.00 0.00 0.00 4.35
1104 1134 4.447724 GTGCGAATGAAGTTGTCTGACTTA 59.552 41.667 9.51 0.00 39.84 2.24
1136 1166 1.352622 AACAGGGGCAGTCAAGGTGA 61.353 55.000 0.00 0.00 0.00 4.02
1194 1224 2.177394 TGCGCCACTGAAACAGATAA 57.823 45.000 4.18 0.00 35.18 1.75
1353 1383 6.412072 CGAACACAACTTCAAACTTCTGAATC 59.588 38.462 0.00 0.00 34.86 2.52
1377 1407 5.448438 CGATCTTCAGTTCTATCTTCCTCG 58.552 45.833 0.00 0.00 0.00 4.63
1437 1467 4.691216 AGTTTGATTAAGAGAAGCACGTCC 59.309 41.667 0.00 0.00 0.00 4.79
1497 1530 0.801251 CGAGCTTGAAGGCCTTGAAG 59.199 55.000 33.04 33.04 36.96 3.02
1532 1565 1.539157 CCACCTTGCCTTCTTCTTCC 58.461 55.000 0.00 0.00 0.00 3.46
1536 1569 0.110486 TCACCCACCTTGCCTTCTTC 59.890 55.000 0.00 0.00 0.00 2.87
1703 1736 0.179089 AGCTCTCTGCCATAGTTGCG 60.179 55.000 0.00 0.00 44.23 4.85
1716 1749 3.585862 TGTCGAATGGTTGTTAGCTCTC 58.414 45.455 0.00 0.00 0.00 3.20
1770 1803 0.185901 AGGTTGGCACCAATCTGTGT 59.814 50.000 14.40 0.00 44.74 3.72
1843 1877 0.398696 AATCACCAACCGTACCTGCA 59.601 50.000 0.00 0.00 0.00 4.41
1850 1884 1.056660 AGAGGACAATCACCAACCGT 58.943 50.000 0.00 0.00 0.00 4.83
2057 2098 3.497227 GGCCCAAGTACAAGTAAACTCCA 60.497 47.826 0.00 0.00 0.00 3.86
2141 2216 4.518211 TGCTAGCGAGTAGGTATTAGGAAC 59.482 45.833 10.77 0.00 31.73 3.62
2166 2241 4.885325 TGATGAATAATGAGCACTGCACAT 59.115 37.500 8.02 8.02 41.19 3.21
2258 2333 1.067516 GCACTGAAAAAGCTCTGCCAA 59.932 47.619 0.00 0.00 0.00 4.52
2387 2463 4.489771 CCATCCCACGACCTGGCC 62.490 72.222 0.00 0.00 39.01 5.36
2433 2509 1.503784 AGCCTGGACTATGCCCTACTA 59.496 52.381 0.00 0.00 0.00 1.82
2437 2513 1.053264 CAGAGCCTGGACTATGCCCT 61.053 60.000 0.00 0.00 0.00 5.19
2450 2526 1.569479 GAACAAGACCGTGCAGAGCC 61.569 60.000 0.00 0.00 0.00 4.70
2488 2564 0.393402 AATGCTTGCAGCGATCCTCA 60.393 50.000 0.87 0.00 46.26 3.86
2501 2577 0.467804 ACGGCCCAAACAAAATGCTT 59.532 45.000 0.00 0.00 0.00 3.91
2518 2594 4.766404 ACAAAAGAAATGGCCTCTAACG 57.234 40.909 3.32 0.00 0.00 3.18
2669 4629 8.101419 AAGGTAAGAGTAAACACCTTAATCAGG 58.899 37.037 3.09 0.00 46.91 3.86
2687 4647 9.932207 TTGTAGAAAATCGTATGAAAGGTAAGA 57.068 29.630 0.00 0.00 0.00 2.10
2711 4671 4.275936 GGTGGATTAGGATCGAAATGGTTG 59.724 45.833 0.00 0.00 32.84 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.