Multiple sequence alignment - TraesCS7B01G388600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G388600 chr7B 100.000 8417 0 0 1 8417 654915137 654923553 0.000000e+00 15544.0
1 TraesCS7B01G388600 chr7B 94.872 117 5 1 626 741 495311922 495311806 1.870000e-41 182.0
2 TraesCS7B01G388600 chr7B 93.243 74 5 0 8020 8093 654923097 654923170 8.930000e-20 110.0
3 TraesCS7B01G388600 chr7B 93.243 74 5 0 7961 8034 654923156 654923229 8.930000e-20 110.0
4 TraesCS7B01G388600 chr7B 81.818 77 10 2 231 307 718359774 718359846 2.540000e-05 62.1
5 TraesCS7B01G388600 chr6B 99.305 3308 23 0 3232 6539 339386344 339383037 0.000000e+00 5982.0
6 TraesCS7B01G388600 chr6B 95.614 114 5 0 631 744 30889182 30889069 5.190000e-42 183.0
7 TraesCS7B01G388600 chr6B 92.157 51 1 2 258 308 129450928 129450881 1.520000e-07 69.4
8 TraesCS7B01G388600 chr1A 99.305 3307 22 1 3232 6538 517048469 517045164 0.000000e+00 5978.0
9 TraesCS7B01G388600 chr1A 82.000 100 7 6 231 323 564146549 564146644 3.260000e-09 75.0
10 TraesCS7B01G388600 chr1A 81.250 80 7 3 234 308 508556865 508556789 3.280000e-04 58.4
11 TraesCS7B01G388600 chr3B 99.274 3308 23 1 3232 6538 695918352 695915045 0.000000e+00 5975.0
12 TraesCS7B01G388600 chr3B 99.244 3307 24 1 3232 6538 25293853 25290548 0.000000e+00 5967.0
13 TraesCS7B01G388600 chr3B 91.538 130 8 3 630 758 48886471 48886598 8.680000e-40 176.0
14 TraesCS7B01G388600 chr3B 92.126 127 6 4 624 747 732824761 732824886 8.680000e-40 176.0
15 TraesCS7B01G388600 chr5A 99.186 3316 26 1 3223 6538 259066400 259069714 0.000000e+00 5973.0
16 TraesCS7B01G388600 chr5A 78.924 223 39 5 6569 6787 704370850 704371068 2.450000e-30 145.0
17 TraesCS7B01G388600 chr5A 100.000 28 0 0 229 256 405808712 405808739 1.500000e-02 52.8
18 TraesCS7B01G388600 chr4B 99.274 3306 24 0 3233 6538 291327916 291324611 0.000000e+00 5973.0
19 TraesCS7B01G388600 chr4B 96.522 115 4 0 631 745 650660018 650659904 3.100000e-44 191.0
20 TraesCS7B01G388600 chr2A 99.244 3309 24 1 3231 6538 216529697 216533005 0.000000e+00 5971.0
21 TraesCS7B01G388600 chr2A 99.244 3308 24 1 3232 6538 676076328 676079635 0.000000e+00 5969.0
22 TraesCS7B01G388600 chr2A 76.245 783 162 20 6550 7327 720060340 720059577 2.200000e-105 394.0
23 TraesCS7B01G388600 chr2A 77.288 590 121 11 831 1416 720062674 720062094 1.350000e-87 335.0
24 TraesCS7B01G388600 chr2A 79.826 461 83 6 2670 3122 720060899 720060441 2.270000e-85 327.0
25 TraesCS7B01G388600 chr2A 77.801 482 88 14 6559 7038 751239197 751239661 6.430000e-71 279.0
26 TraesCS7B01G388600 chr2A 77.847 483 86 15 6559 7038 751269583 751270047 6.430000e-71 279.0
27 TraesCS7B01G388600 chr2A 76.680 506 97 15 6540 7040 751233991 751234480 2.330000e-65 261.0
28 TraesCS7B01G388600 chr2A 80.315 254 48 2 2897 3150 721009211 721008960 3.100000e-44 191.0
29 TraesCS7B01G388600 chr2A 78.495 186 39 1 2617 2801 750556506 750556691 4.130000e-23 121.0
30 TraesCS7B01G388600 chr2A 84.211 114 16 2 6879 6991 721104425 721104313 8.930000e-20 110.0
31 TraesCS7B01G388600 chr2A 78.431 102 19 3 2698 2797 52762962 52762862 7.050000e-06 63.9
32 TraesCS7B01G388600 chr1B 99.185 3311 27 0 3232 6542 357015874 357012564 0.000000e+00 5965.0
33 TraesCS7B01G388600 chr7D 94.735 2507 117 9 736 3233 585556412 585558912 0.000000e+00 3884.0
34 TraesCS7B01G388600 chr7D 93.880 915 45 6 6529 7434 585558886 585559798 0.000000e+00 1369.0
35 TraesCS7B01G388600 chr7D 89.889 633 44 9 1 629 585555794 585556410 0.000000e+00 797.0
36 TraesCS7B01G388600 chr7D 86.618 411 28 18 8026 8417 585559785 585560187 6.040000e-116 429.0
37 TraesCS7B01G388600 chr7D 95.536 112 5 0 627 738 42694857 42694746 6.710000e-41 180.0
38 TraesCS7B01G388600 chr7D 95.161 62 3 0 7973 8034 585559791 585559852 1.930000e-16 99.0
39 TraesCS7B01G388600 chr7D 100.000 31 0 0 794 824 585556530 585556560 3.280000e-04 58.4
40 TraesCS7B01G388600 chr7A 94.311 2496 111 17 741 3233 675587024 675589491 0.000000e+00 3794.0
41 TraesCS7B01G388600 chr7A 89.867 1500 112 20 6529 8013 675589465 675590939 0.000000e+00 1892.0
42 TraesCS7B01G388600 chr7A 88.908 568 54 6 66 629 675586455 675587017 0.000000e+00 691.0
43 TraesCS7B01G388600 chr7A 91.250 320 14 4 8106 8417 675592485 675592798 2.810000e-114 424.0
44 TraesCS7B01G388600 chr7A 100.000 81 0 0 8029 8109 675590928 675591008 5.260000e-32 150.0
45 TraesCS7B01G388600 chr7A 100.000 51 0 0 8022 8072 675590889 675590939 2.500000e-15 95.3
46 TraesCS7B01G388600 chr7A 100.000 34 0 0 8001 8034 675590959 675590992 7.050000e-06 63.9
47 TraesCS7B01G388600 chr7A 100.000 31 0 0 794 824 675587127 675587157 3.280000e-04 58.4
48 TraesCS7B01G388600 chr2B 76.515 792 156 24 6551 7336 707671247 707670480 1.020000e-108 405.0
49 TraesCS7B01G388600 chr2B 76.196 794 163 22 6549 7336 707415120 707414347 6.120000e-106 396.0
50 TraesCS7B01G388600 chr2B 78.723 470 88 9 2662 3122 707415688 707415222 3.820000e-78 303.0
51 TraesCS7B01G388600 chr2B 74.830 735 147 27 6559 7287 759441481 759442183 1.780000e-76 298.0
52 TraesCS7B01G388600 chr2B 74.133 750 158 26 6540 7279 707239976 707239253 2.310000e-70 278.0
53 TraesCS7B01G388600 chr2B 82.422 256 40 5 2875 3129 756622283 756622534 1.420000e-52 219.0
54 TraesCS7B01G388600 chr2B 82.692 208 36 0 2918 3125 706731247 706731040 1.440000e-42 185.0
55 TraesCS7B01G388600 chr2B 94.167 120 6 1 625 743 682917326 682917445 1.870000e-41 182.0
56 TraesCS7B01G388600 chr2B 94.118 119 6 1 626 743 99152088 99152206 6.710000e-41 180.0
57 TraesCS7B01G388600 chr2B 79.279 222 37 8 844 1060 707956666 707956449 6.810000e-31 147.0
58 TraesCS7B01G388600 chr2B 78.495 186 39 1 2617 2801 758800445 758800260 4.130000e-23 121.0
59 TraesCS7B01G388600 chr2D 76.280 586 125 12 840 1420 586151542 586152118 4.940000e-77 300.0
60 TraesCS7B01G388600 chr2D 77.935 494 90 12 6549 7039 585687008 585686531 2.970000e-74 291.0
61 TraesCS7B01G388600 chr2D 77.872 470 93 9 2662 3122 585894547 585894080 1.790000e-71 281.0
62 TraesCS7B01G388600 chr2D 73.725 765 166 26 6561 7320 619568675 619569409 5.010000e-67 267.0
63 TraesCS7B01G388600 chr2D 77.386 482 87 16 6559 7038 619703310 619703771 5.010000e-67 267.0
64 TraesCS7B01G388600 chr2D 85.833 240 34 0 6549 6788 585893977 585893738 1.080000e-63 255.0
65 TraesCS7B01G388600 chr2D 79.006 181 36 2 2617 2796 619404572 619404751 1.150000e-23 122.0
66 TraesCS7B01G388600 chr6A 74.884 430 94 12 858 1278 593442505 593442081 5.190000e-42 183.0
67 TraesCS7B01G388600 chr6A 93.443 122 8 0 631 752 91886018 91886139 1.870000e-41 182.0
68 TraesCS7B01G388600 chr6A 89.831 59 1 4 252 308 72524486 72524431 4.220000e-08 71.3
69 TraesCS7B01G388600 chr4D 82.840 169 29 0 6569 6737 508341909 508342077 1.460000e-32 152.0
70 TraesCS7B01G388600 chr5D 89.831 59 1 3 257 313 396452393 396452338 4.220000e-08 71.3
71 TraesCS7B01G388600 chr3A 83.562 73 5 4 234 306 238688700 238688635 2.540000e-05 62.1
72 TraesCS7B01G388600 chr3D 100.000 28 0 0 229 256 406500687 406500660 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G388600 chr7B 654915137 654923553 8416 False 5254.666667 15544 95.495333 1 8417 3 chr7B.!!$F2 8416
1 TraesCS7B01G388600 chr6B 339383037 339386344 3307 True 5982.000000 5982 99.305000 3232 6539 1 chr6B.!!$R3 3307
2 TraesCS7B01G388600 chr1A 517045164 517048469 3305 True 5978.000000 5978 99.305000 3232 6538 1 chr1A.!!$R2 3306
3 TraesCS7B01G388600 chr3B 695915045 695918352 3307 True 5975.000000 5975 99.274000 3232 6538 1 chr3B.!!$R2 3306
4 TraesCS7B01G388600 chr3B 25290548 25293853 3305 True 5967.000000 5967 99.244000 3232 6538 1 chr3B.!!$R1 3306
5 TraesCS7B01G388600 chr5A 259066400 259069714 3314 False 5973.000000 5973 99.186000 3223 6538 1 chr5A.!!$F1 3315
6 TraesCS7B01G388600 chr4B 291324611 291327916 3305 True 5973.000000 5973 99.274000 3233 6538 1 chr4B.!!$R1 3305
7 TraesCS7B01G388600 chr2A 216529697 216533005 3308 False 5971.000000 5971 99.244000 3231 6538 1 chr2A.!!$F1 3307
8 TraesCS7B01G388600 chr2A 676076328 676079635 3307 False 5969.000000 5969 99.244000 3232 6538 1 chr2A.!!$F2 3306
9 TraesCS7B01G388600 chr2A 720059577 720062674 3097 True 352.000000 394 77.786333 831 7327 3 chr2A.!!$R4 6496
10 TraesCS7B01G388600 chr1B 357012564 357015874 3310 True 5965.000000 5965 99.185000 3232 6542 1 chr1B.!!$R1 3310
11 TraesCS7B01G388600 chr7D 585555794 585560187 4393 False 1106.066667 3884 93.380500 1 8417 6 chr7D.!!$F1 8416
12 TraesCS7B01G388600 chr7A 675586455 675592798 6343 False 896.075000 3794 95.542000 66 8417 8 chr7A.!!$F1 8351
13 TraesCS7B01G388600 chr2B 707670480 707671247 767 True 405.000000 405 76.515000 6551 7336 1 chr2B.!!$R3 785
14 TraesCS7B01G388600 chr2B 707414347 707415688 1341 True 349.500000 396 77.459500 2662 7336 2 chr2B.!!$R6 4674
15 TraesCS7B01G388600 chr2B 759441481 759442183 702 False 298.000000 298 74.830000 6559 7287 1 chr2B.!!$F4 728
16 TraesCS7B01G388600 chr2B 707239253 707239976 723 True 278.000000 278 74.133000 6540 7279 1 chr2B.!!$R2 739
17 TraesCS7B01G388600 chr2D 586151542 586152118 576 False 300.000000 300 76.280000 840 1420 1 chr2D.!!$F1 580
18 TraesCS7B01G388600 chr2D 585893738 585894547 809 True 268.000000 281 81.852500 2662 6788 2 chr2D.!!$R2 4126
19 TraesCS7B01G388600 chr2D 619568675 619569409 734 False 267.000000 267 73.725000 6561 7320 1 chr2D.!!$F3 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 658 0.037303 TCAGTCGTACTCCCTCCGTT 59.963 55.000 0.00 0.00 0.00 4.44 F
1330 1350 0.180642 TGTGGTTGGGCGTCTTGTTA 59.819 50.000 0.00 0.00 0.00 2.41 F
1648 1668 1.202200 CCTCGTCTTCATCGACAGTCC 60.202 57.143 0.00 0.00 33.54 3.85 F
2001 2021 1.203187 AGGTGCTTAGTCTGGACAGGA 60.203 52.381 3.51 0.00 0.00 3.86 F
2309 2329 2.690497 TGAGAGGGAGACGCTATTTCAG 59.310 50.000 0.00 0.00 0.00 3.02 F
3660 3705 1.066502 GTCTCTGACAGGGAAGCTTCC 60.067 57.143 33.67 33.67 38.32 3.46 F
4071 4116 5.067954 GGGTACATCTAACACAGGTTTTGT 58.932 41.667 0.00 0.00 41.94 2.83 F
4708 4753 0.236711 CAAAGCGAGCTGTTGGTGAG 59.763 55.000 0.00 0.00 0.00 3.51 F
4842 4887 3.057969 AGTCAAATGCATCAAGGACGA 57.942 42.857 0.00 0.00 0.00 4.20 F
6443 6491 2.025981 TGGAAGCTTGCTATCCATGTGT 60.026 45.455 19.34 0.00 38.30 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 1863 0.036306 AAGTTGTCCGGGACCATCAC 59.964 55.000 23.81 14.57 0.00 3.06 R
3222 3267 0.037326 TAGGCGGAGTTGTCTTGCAG 60.037 55.000 0.00 0.00 0.00 4.41 R
3223 3268 0.613260 ATAGGCGGAGTTGTCTTGCA 59.387 50.000 0.00 0.00 0.00 4.08 R
3660 3705 0.460811 TGCTGCATCAACTAGCTCCG 60.461 55.000 0.00 0.00 38.25 4.63 R
4368 4413 0.460284 CGTTCTAGCGACCTTGGCAT 60.460 55.000 0.00 0.00 0.00 4.40 R
4708 4753 3.133365 ATATGCCCGACCCCTTGCC 62.133 63.158 0.00 0.00 0.00 4.52 R
5801 5847 3.407698 TGAAACCGCACATCATGTACTT 58.592 40.909 0.00 0.00 0.00 2.24 R
6337 6383 0.740737 CCTCCCATGTCAAAATCGGC 59.259 55.000 0.00 0.00 0.00 5.54 R
6555 6603 1.740025 GTAGGCCAATCAAGCACAGAC 59.260 52.381 5.01 0.00 0.00 3.51 R
7809 7907 0.040781 GCTGCACGCGTAAAGGAAAA 60.041 50.000 13.44 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.422577 AATAGCTAAAACAAGACAAATTCCCT 57.577 30.769 0.00 0.00 0.00 4.20
62 63 7.918562 TGCTAAAATAAGCCAAAAATACGGATC 59.081 33.333 0.00 0.00 42.05 3.36
63 64 8.135529 GCTAAAATAAGCCAAAAATACGGATCT 58.864 33.333 0.00 0.00 36.45 2.75
64 65 9.450807 CTAAAATAAGCCAAAAATACGGATCTG 57.549 33.333 0.00 0.00 0.00 2.90
78 79 2.418471 CGGATCTGCTGAGAAAGAAGCT 60.418 50.000 0.00 0.00 40.21 3.74
80 81 4.009002 GGATCTGCTGAGAAAGAAGCTTT 58.991 43.478 0.00 0.00 40.21 3.51
81 82 4.458642 GGATCTGCTGAGAAAGAAGCTTTT 59.541 41.667 0.00 0.00 40.21 2.27
88 89 5.409643 TGAGAAAGAAGCTTTTGTTCTCG 57.590 39.130 26.15 0.00 44.62 4.04
110 111 4.330074 CGAGAAGCAGGATCAACGTTAATT 59.670 41.667 0.00 0.00 0.00 1.40
139 143 1.559682 ACGGCTAATTGATGGGTGACT 59.440 47.619 0.00 0.00 0.00 3.41
178 182 1.938585 AGCACCTGAGCAGTAGGTAA 58.061 50.000 6.28 0.00 46.55 2.85
181 185 2.432510 GCACCTGAGCAGTAGGTAATCT 59.567 50.000 6.28 0.00 46.55 2.40
182 186 3.118592 GCACCTGAGCAGTAGGTAATCTT 60.119 47.826 6.28 0.00 46.55 2.40
203 207 7.400599 TCTTAAAGTATAAGAGGCAGTTCGA 57.599 36.000 0.00 0.00 0.00 3.71
204 208 7.481642 TCTTAAAGTATAAGAGGCAGTTCGAG 58.518 38.462 0.00 0.00 0.00 4.04
227 231 2.988010 TGGTCAGACCATCTATGCAC 57.012 50.000 19.21 0.00 44.79 4.57
228 232 2.470990 TGGTCAGACCATCTATGCACT 58.529 47.619 19.21 0.00 44.79 4.40
229 233 2.169144 TGGTCAGACCATCTATGCACTG 59.831 50.000 19.21 0.00 44.79 3.66
230 234 2.169352 GGTCAGACCATCTATGCACTGT 59.831 50.000 15.43 0.00 38.42 3.55
231 235 3.384789 GGTCAGACCATCTATGCACTGTA 59.615 47.826 15.43 0.00 38.42 2.74
232 236 4.039730 GGTCAGACCATCTATGCACTGTAT 59.960 45.833 15.43 0.00 38.42 2.29
233 237 5.453903 GGTCAGACCATCTATGCACTGTATT 60.454 44.000 15.43 0.00 38.42 1.89
234 238 5.694006 GTCAGACCATCTATGCACTGTATTC 59.306 44.000 0.00 0.00 34.03 1.75
235 239 4.993584 CAGACCATCTATGCACTGTATTCC 59.006 45.833 0.00 0.00 0.00 3.01
236 240 4.040952 AGACCATCTATGCACTGTATTCCC 59.959 45.833 0.00 0.00 0.00 3.97
237 241 3.976654 ACCATCTATGCACTGTATTCCCT 59.023 43.478 0.00 0.00 0.00 4.20
238 242 4.040952 ACCATCTATGCACTGTATTCCCTC 59.959 45.833 0.00 0.00 0.00 4.30
303 318 7.781324 AAATCAGTGACACTTATTTTGGGAT 57.219 32.000 18.03 8.05 30.30 3.85
370 385 3.004734 GTCACCTCCAAGAAACAATGGTG 59.995 47.826 0.00 0.00 43.22 4.17
388 403 8.723365 ACAATGGTGGAAATATAGTCTGGATTA 58.277 33.333 0.00 0.00 0.00 1.75
404 419 5.130477 TCTGGATTAGATTGGTACCTTGACC 59.870 44.000 14.36 6.54 40.21 4.02
421 436 3.033909 TGACCGAGACTGATGGATGAAT 58.966 45.455 0.00 0.00 0.00 2.57
422 437 3.181472 TGACCGAGACTGATGGATGAATG 60.181 47.826 0.00 0.00 0.00 2.67
429 444 1.263484 CTGATGGATGAATGCAGCGAC 59.737 52.381 0.00 0.00 37.34 5.19
436 451 1.291184 TGAATGCAGCGACGACTTGG 61.291 55.000 0.00 0.00 0.00 3.61
496 512 1.333619 TCTGGCGCTTGTTGAAACTTC 59.666 47.619 7.64 0.00 0.00 3.01
550 566 3.438088 GTCGACTTCACAGCGACG 58.562 61.111 8.70 0.00 43.76 5.12
553 569 1.797933 CGACTTCACAGCGACGGAG 60.798 63.158 0.00 0.00 0.00 4.63
583 599 2.632028 CCCCAACCACACATTCATTCAA 59.368 45.455 0.00 0.00 0.00 2.69
618 634 0.603569 TGTGTTGGCAAAAACCGTGT 59.396 45.000 0.00 0.00 0.00 4.49
621 637 1.135257 TGTTGGCAAAAACCGTGTCTG 60.135 47.619 0.00 0.00 0.00 3.51
629 645 0.249322 AAACCGTGTCTGGTCAGTCG 60.249 55.000 0.00 2.89 42.89 4.18
630 646 1.389609 AACCGTGTCTGGTCAGTCGT 61.390 55.000 0.00 0.00 42.89 4.34
631 647 0.535780 ACCGTGTCTGGTCAGTCGTA 60.536 55.000 0.00 0.00 37.91 3.43
632 648 0.109873 CCGTGTCTGGTCAGTCGTAC 60.110 60.000 0.00 0.00 0.00 3.67
633 649 0.873054 CGTGTCTGGTCAGTCGTACT 59.127 55.000 0.00 0.00 0.00 2.73
634 650 1.136029 CGTGTCTGGTCAGTCGTACTC 60.136 57.143 0.00 0.00 0.00 2.59
635 651 1.199558 GTGTCTGGTCAGTCGTACTCC 59.800 57.143 0.00 0.00 0.00 3.85
636 652 0.810016 GTCTGGTCAGTCGTACTCCC 59.190 60.000 0.00 0.00 0.00 4.30
637 653 0.697079 TCTGGTCAGTCGTACTCCCT 59.303 55.000 0.00 0.00 0.00 4.20
638 654 1.096416 CTGGTCAGTCGTACTCCCTC 58.904 60.000 0.00 0.00 0.00 4.30
639 655 0.323178 TGGTCAGTCGTACTCCCTCC 60.323 60.000 0.00 0.00 0.00 4.30
640 656 1.375098 GGTCAGTCGTACTCCCTCCG 61.375 65.000 0.00 0.00 0.00 4.63
641 657 0.676151 GTCAGTCGTACTCCCTCCGT 60.676 60.000 0.00 0.00 0.00 4.69
642 658 0.037303 TCAGTCGTACTCCCTCCGTT 59.963 55.000 0.00 0.00 0.00 4.44
643 659 0.450983 CAGTCGTACTCCCTCCGTTC 59.549 60.000 0.00 0.00 0.00 3.95
644 660 0.679321 AGTCGTACTCCCTCCGTTCC 60.679 60.000 0.00 0.00 0.00 3.62
645 661 0.962356 GTCGTACTCCCTCCGTTCCA 60.962 60.000 0.00 0.00 0.00 3.53
646 662 0.251297 TCGTACTCCCTCCGTTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
647 663 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
648 664 1.206371 CGTACTCCCTCCGTTCCAAAT 59.794 52.381 0.00 0.00 0.00 2.32
649 665 2.354403 CGTACTCCCTCCGTTCCAAATT 60.354 50.000 0.00 0.00 0.00 1.82
650 666 3.119029 CGTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
651 667 4.442472 CGTACTCCCTCCGTTCCAAATTAT 60.442 45.833 0.00 0.00 0.00 1.28
652 668 4.586306 ACTCCCTCCGTTCCAAATTATT 57.414 40.909 0.00 0.00 0.00 1.40
653 669 4.524053 ACTCCCTCCGTTCCAAATTATTC 58.476 43.478 0.00 0.00 0.00 1.75
654 670 4.018779 ACTCCCTCCGTTCCAAATTATTCA 60.019 41.667 0.00 0.00 0.00 2.57
655 671 5.124036 TCCCTCCGTTCCAAATTATTCAT 57.876 39.130 0.00 0.00 0.00 2.57
656 672 5.130350 TCCCTCCGTTCCAAATTATTCATC 58.870 41.667 0.00 0.00 0.00 2.92
657 673 4.024048 CCCTCCGTTCCAAATTATTCATCG 60.024 45.833 0.00 0.00 0.00 3.84
658 674 4.527564 CTCCGTTCCAAATTATTCATCGC 58.472 43.478 0.00 0.00 0.00 4.58
659 675 4.196193 TCCGTTCCAAATTATTCATCGCT 58.804 39.130 0.00 0.00 0.00 4.93
660 676 4.035091 TCCGTTCCAAATTATTCATCGCTG 59.965 41.667 0.00 0.00 0.00 5.18
661 677 4.035091 CCGTTCCAAATTATTCATCGCTGA 59.965 41.667 0.00 0.00 0.00 4.26
662 678 5.448496 CCGTTCCAAATTATTCATCGCTGAA 60.448 40.000 3.88 3.88 45.15 3.02
663 679 6.027131 CGTTCCAAATTATTCATCGCTGAAA 58.973 36.000 5.70 0.00 44.29 2.69
664 680 6.692681 CGTTCCAAATTATTCATCGCTGAAAT 59.307 34.615 5.70 0.00 44.29 2.17
665 681 7.305590 CGTTCCAAATTATTCATCGCTGAAATG 60.306 37.037 5.70 1.47 44.29 2.32
666 682 6.506147 TCCAAATTATTCATCGCTGAAATGG 58.494 36.000 5.70 9.49 44.29 3.16
667 683 6.320926 TCCAAATTATTCATCGCTGAAATGGA 59.679 34.615 5.70 11.34 44.29 3.41
668 684 7.014518 TCCAAATTATTCATCGCTGAAATGGAT 59.985 33.333 5.70 0.00 44.29 3.41
669 685 7.115805 CCAAATTATTCATCGCTGAAATGGATG 59.884 37.037 5.70 3.68 44.29 3.51
670 686 6.889301 ATTATTCATCGCTGAAATGGATGT 57.111 33.333 5.70 0.00 44.29 3.06
671 687 7.984422 ATTATTCATCGCTGAAATGGATGTA 57.016 32.000 5.70 0.00 44.29 2.29
672 688 7.984422 TTATTCATCGCTGAAATGGATGTAT 57.016 32.000 5.70 0.17 44.29 2.29
673 689 5.929697 TTCATCGCTGAAATGGATGTATC 57.070 39.130 0.00 0.00 38.43 2.24
674 690 5.219343 TCATCGCTGAAATGGATGTATCT 57.781 39.130 0.00 0.00 38.86 1.98
675 691 6.345096 TCATCGCTGAAATGGATGTATCTA 57.655 37.500 0.00 0.00 38.86 1.98
676 692 6.758254 TCATCGCTGAAATGGATGTATCTAA 58.242 36.000 0.00 0.00 38.86 2.10
677 693 7.216494 TCATCGCTGAAATGGATGTATCTAAA 58.784 34.615 0.00 0.00 38.86 1.85
678 694 7.714813 TCATCGCTGAAATGGATGTATCTAAAA 59.285 33.333 0.00 0.00 38.86 1.52
679 695 7.246674 TCGCTGAAATGGATGTATCTAAAAC 57.753 36.000 0.00 0.00 0.00 2.43
680 696 7.047891 TCGCTGAAATGGATGTATCTAAAACT 58.952 34.615 0.00 0.00 0.00 2.66
681 697 8.201464 TCGCTGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
682 698 8.826710 CGCTGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
709 725 8.703604 ATACATTTAGATACATCCATACGTGC 57.296 34.615 0.00 0.00 0.00 5.34
710 726 5.633601 ACATTTAGATACATCCATACGTGCG 59.366 40.000 0.00 0.00 0.00 5.34
711 727 5.441709 TTTAGATACATCCATACGTGCGA 57.558 39.130 0.00 0.00 0.00 5.10
712 728 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
713 729 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
714 730 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
715 731 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
716 732 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
717 733 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
718 734 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
719 735 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
720 736 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
721 737 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
722 738 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
723 739 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
724 740 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
725 741 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
726 742 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
856 875 6.128172 GCATCCCCATTTTGATTCTACTATCG 60.128 42.308 0.00 0.00 0.00 2.92
1075 1094 2.040412 ACCAATCACCTCCTCTGTTTCC 59.960 50.000 0.00 0.00 0.00 3.13
1122 1141 0.250513 GGCCTGATCTTGTCCGACTT 59.749 55.000 0.00 0.00 0.00 3.01
1185 1205 0.872021 GAGATACCGGAGTTGCTGCG 60.872 60.000 9.46 3.11 44.57 5.18
1196 1216 3.664025 TTGCTGCGGTGATCCTCGG 62.664 63.158 0.00 0.00 0.00 4.63
1197 1217 4.899239 GCTGCGGTGATCCTCGGG 62.899 72.222 0.00 0.00 0.00 5.14
1280 1300 2.671682 GGACACCCTCCTTCCTGC 59.328 66.667 0.00 0.00 35.89 4.85
1330 1350 0.180642 TGTGGTTGGGCGTCTTGTTA 59.819 50.000 0.00 0.00 0.00 2.41
1425 1445 6.157994 AGGTAGTAATTTGGCATGGAACTAGA 59.842 38.462 0.00 0.00 0.00 2.43
1458 1478 2.677836 CACCATGGTTCGGAACAGTATG 59.322 50.000 16.84 19.15 46.00 2.39
1533 1553 1.476891 GTCACTGGCATAGGAGACGAA 59.523 52.381 0.00 0.00 0.00 3.85
1546 1566 2.353889 GGAGACGAATACTACGCTGTGA 59.646 50.000 0.00 0.00 0.00 3.58
1616 1636 7.294017 ACACTGGAAAAATGAAGACATTGAT 57.706 32.000 0.00 0.00 44.67 2.57
1648 1668 1.202200 CCTCGTCTTCATCGACAGTCC 60.202 57.143 0.00 0.00 33.54 3.85
1657 1677 3.432588 CGACAGTCCTCGGCGAGT 61.433 66.667 32.41 16.90 0.00 4.18
1658 1678 2.104859 CGACAGTCCTCGGCGAGTA 61.105 63.158 32.41 17.68 0.00 2.59
1671 1691 2.283529 CGAGTACCCCACTGCCTGT 61.284 63.158 0.00 0.00 37.72 4.00
1818 1838 1.470098 CCTCTGAAATGTGGAAAGCCG 59.530 52.381 0.00 0.00 36.79 5.52
1830 1850 4.202202 TGTGGAAAGCCGAATCATTTTGTT 60.202 37.500 0.00 0.00 36.79 2.83
1843 1863 2.021355 TTTTGTTGCTTTGCCTGTGG 57.979 45.000 0.00 0.00 0.00 4.17
2001 2021 1.203187 AGGTGCTTAGTCTGGACAGGA 60.203 52.381 3.51 0.00 0.00 3.86
2018 2038 3.144506 CAGGAGAGCTTGTTGACACATT 58.855 45.455 0.00 0.00 31.06 2.71
2023 2043 3.004106 AGAGCTTGTTGACACATTGAAGC 59.996 43.478 0.00 0.00 34.47 3.86
2109 2129 4.789802 GCCCTAGCATTATTTTCTTCGTGC 60.790 45.833 0.00 0.00 39.53 5.34
2241 2261 8.439993 TGTGAACTTAACAGCATAACAGTAAA 57.560 30.769 0.00 0.00 0.00 2.01
2284 2304 4.767928 TGGGTAAATTTGCAAGTATTCGGT 59.232 37.500 8.59 0.00 0.00 4.69
2295 2315 5.047306 TGCAAGTATTCGGTATATGAGAGGG 60.047 44.000 0.00 0.00 0.00 4.30
2307 2327 5.652994 ATATGAGAGGGAGACGCTATTTC 57.347 43.478 0.00 0.00 0.00 2.17
2309 2329 2.690497 TGAGAGGGAGACGCTATTTCAG 59.310 50.000 0.00 0.00 0.00 3.02
2310 2330 2.691011 GAGAGGGAGACGCTATTTCAGT 59.309 50.000 0.00 0.00 0.00 3.41
2415 2443 6.721318 TGTCTATCCCTGAAAAAGTAATGCT 58.279 36.000 0.00 0.00 0.00 3.79
2416 2444 6.599244 TGTCTATCCCTGAAAAAGTAATGCTG 59.401 38.462 0.00 0.00 0.00 4.41
2458 2486 9.945904 AAAAGAACAACAATTTGGTAAAGGTTA 57.054 25.926 0.78 0.00 37.00 2.85
2545 2578 5.930135 ACAGAGGTAGAACAAACATGAGTT 58.070 37.500 0.00 0.75 40.40 3.01
2566 2599 7.604164 TGAGTTCCTGATTACAGAATTCAACTC 59.396 37.037 8.44 13.07 46.03 3.01
2660 2693 8.412608 ACAAAGACAGATGTTAAGATATGTCG 57.587 34.615 25.63 17.78 45.32 4.35
2690 2723 7.111247 TCAAATGAAATTGGAGGCGAATATT 57.889 32.000 0.00 0.00 36.10 1.28
2819 2852 7.129109 ACATAAAGTTTTACATCCACGACAG 57.871 36.000 0.00 0.00 0.00 3.51
2849 2890 7.026631 TGCTCATTTTAAGGATAATTGTCCG 57.973 36.000 14.83 0.30 43.27 4.79
3225 3270 9.748708 TTGATATTTATTATTGAAAGGTGCTGC 57.251 29.630 0.00 0.00 0.00 5.25
3226 3271 8.911965 TGATATTTATTATTGAAAGGTGCTGCA 58.088 29.630 0.00 0.00 0.00 4.41
3227 3272 9.748708 GATATTTATTATTGAAAGGTGCTGCAA 57.251 29.630 2.77 0.00 0.00 4.08
3228 3273 9.754382 ATATTTATTATTGAAAGGTGCTGCAAG 57.246 29.630 2.77 0.00 0.00 4.01
3229 3274 6.832520 TTATTATTGAAAGGTGCTGCAAGA 57.167 33.333 2.77 0.00 34.07 3.02
3355 3400 5.982890 TGGAGATGAAACCCAAAAGATTC 57.017 39.130 0.00 0.00 0.00 2.52
3660 3705 1.066502 GTCTCTGACAGGGAAGCTTCC 60.067 57.143 33.67 33.67 38.32 3.46
4071 4116 5.067954 GGGTACATCTAACACAGGTTTTGT 58.932 41.667 0.00 0.00 41.94 2.83
4708 4753 0.236711 CAAAGCGAGCTGTTGGTGAG 59.763 55.000 0.00 0.00 0.00 3.51
4842 4887 3.057969 AGTCAAATGCATCAAGGACGA 57.942 42.857 0.00 0.00 0.00 4.20
5422 5468 5.449588 GGACTTGCATATGGTGTTCATTGAG 60.450 44.000 4.56 0.00 37.30 3.02
5801 5847 7.879677 GGTTTAGGCTTAGTAGAACTAAAACCA 59.120 37.037 17.49 6.27 39.89 3.67
6443 6491 2.025981 TGGAAGCTTGCTATCCATGTGT 60.026 45.455 19.34 0.00 38.30 3.72
6686 6734 9.206870 CAAAGCAAGTAACATTTTGTTGGATAT 57.793 29.630 3.22 0.00 41.30 1.63
6806 6857 2.969821 ACCAAATGTCCTAGCCAACA 57.030 45.000 0.00 0.00 0.00 3.33
6909 6981 2.212652 TGTCGCCAGAATATGTGATGC 58.787 47.619 0.00 0.00 0.00 3.91
7263 7346 0.321671 ATGATCGCCCCCTAATGTCG 59.678 55.000 0.00 0.00 0.00 4.35
7353 7436 4.683832 CTCTAGGTAATTGTGAAGTCGGG 58.316 47.826 0.00 0.00 0.00 5.14
7359 7445 2.698855 ATTGTGAAGTCGGGGAGATG 57.301 50.000 0.00 0.00 0.00 2.90
7472 7558 5.946942 ACTGTGATCTATTCTGTGTGGAT 57.053 39.130 0.00 0.00 0.00 3.41
7474 7560 5.660417 ACTGTGATCTATTCTGTGTGGATCT 59.340 40.000 0.00 0.00 35.30 2.75
7506 7592 6.537301 TGTCGGTTTGGACATCAGTATTATTC 59.463 38.462 0.00 0.00 41.76 1.75
7509 7595 6.074302 CGGTTTGGACATCAGTATTATTCTCG 60.074 42.308 0.00 0.00 0.00 4.04
7510 7596 6.202954 GGTTTGGACATCAGTATTATTCTCGG 59.797 42.308 0.00 0.00 0.00 4.63
7516 7602 7.755822 GGACATCAGTATTATTCTCGGTATGTC 59.244 40.741 0.00 0.00 39.00 3.06
7517 7603 8.410673 ACATCAGTATTATTCTCGGTATGTCT 57.589 34.615 0.00 0.00 0.00 3.41
7518 7604 8.861086 ACATCAGTATTATTCTCGGTATGTCTT 58.139 33.333 0.00 0.00 0.00 3.01
7524 7610 4.553330 ATTCTCGGTATGTCTTGGTTGT 57.447 40.909 0.00 0.00 0.00 3.32
7547 7633 9.624697 TTGTTCTTATCTTTGATGTGCAAATAC 57.375 29.630 0.00 0.00 44.90 1.89
7554 7640 0.734889 GATGTGCAAATACGCCTGCT 59.265 50.000 0.00 0.00 39.38 4.24
7564 7650 0.661552 TACGCCTGCTAGAAGCTACG 59.338 55.000 0.00 0.00 42.97 3.51
7572 7658 0.592754 CTAGAAGCTACGGCGAGCAC 60.593 60.000 25.27 19.56 45.43 4.40
7586 7672 0.470341 GAGCACCATCCTAACTCCCC 59.530 60.000 0.00 0.00 0.00 4.81
7601 7687 2.576648 ACTCCCCAGTCCTAAATCCAAC 59.423 50.000 0.00 0.00 0.00 3.77
7603 7689 1.379527 CCCAGTCCTAAATCCAACGC 58.620 55.000 0.00 0.00 0.00 4.84
7604 7690 1.379527 CCAGTCCTAAATCCAACGCC 58.620 55.000 0.00 0.00 0.00 5.68
7620 7706 2.668280 GCCGCTGGAGTTTGTCGTC 61.668 63.158 0.00 0.00 0.00 4.20
7625 7711 1.996191 GCTGGAGTTTGTCGTCAGATC 59.004 52.381 0.00 0.00 0.00 2.75
7630 7716 2.662156 GAGTTTGTCGTCAGATCCGTTC 59.338 50.000 0.00 0.00 0.00 3.95
7633 7719 0.109272 TGTCGTCAGATCCGTTCAGC 60.109 55.000 0.00 0.00 0.00 4.26
7643 7729 0.874390 TCCGTTCAGCAGCAAATCAC 59.126 50.000 0.00 0.00 0.00 3.06
7644 7730 0.109597 CCGTTCAGCAGCAAATCACC 60.110 55.000 0.00 0.00 0.00 4.02
7645 7731 0.592637 CGTTCAGCAGCAAATCACCA 59.407 50.000 0.00 0.00 0.00 4.17
7648 7734 2.796593 GTTCAGCAGCAAATCACCAAAC 59.203 45.455 0.00 0.00 0.00 2.93
7649 7735 2.030371 TCAGCAGCAAATCACCAAACA 58.970 42.857 0.00 0.00 0.00 2.83
7650 7736 2.429971 TCAGCAGCAAATCACCAAACAA 59.570 40.909 0.00 0.00 0.00 2.83
7651 7737 3.069872 TCAGCAGCAAATCACCAAACAAT 59.930 39.130 0.00 0.00 0.00 2.71
7652 7738 3.185594 CAGCAGCAAATCACCAAACAATG 59.814 43.478 0.00 0.00 0.00 2.82
7653 7739 2.096119 GCAGCAAATCACCAAACAATGC 60.096 45.455 0.00 0.00 0.00 3.56
7654 7740 2.156117 CAGCAAATCACCAAACAATGCG 59.844 45.455 0.00 0.00 37.40 4.73
7655 7741 1.460359 GCAAATCACCAAACAATGCGG 59.540 47.619 0.00 0.00 0.00 5.69
7656 7742 2.067766 CAAATCACCAAACAATGCGGG 58.932 47.619 0.00 0.00 0.00 6.13
7657 7743 0.037419 AATCACCAAACAATGCGGGC 60.037 50.000 0.00 0.00 0.00 6.13
7658 7744 1.887344 ATCACCAAACAATGCGGGCC 61.887 55.000 0.00 0.00 0.00 5.80
7659 7745 2.522923 ACCAAACAATGCGGGCCA 60.523 55.556 4.39 0.00 0.00 5.36
7660 7746 2.048316 CCAAACAATGCGGGCCAC 60.048 61.111 4.39 0.00 0.00 5.01
7661 7747 2.573083 CCAAACAATGCGGGCCACT 61.573 57.895 4.39 0.00 0.00 4.00
7662 7748 1.367102 CAAACAATGCGGGCCACTT 59.633 52.632 4.39 0.00 0.00 3.16
7663 7749 0.667184 CAAACAATGCGGGCCACTTC 60.667 55.000 4.39 0.00 0.00 3.01
7664 7750 0.827507 AAACAATGCGGGCCACTTCT 60.828 50.000 4.39 0.00 0.00 2.85
7665 7751 1.526575 AACAATGCGGGCCACTTCTG 61.527 55.000 4.39 0.00 0.00 3.02
7690 7776 1.522092 CTTCAGTAGGCGGCATGGA 59.478 57.895 13.08 0.18 0.00 3.41
7691 7777 0.811616 CTTCAGTAGGCGGCATGGAC 60.812 60.000 13.08 3.34 0.00 4.02
7730 7828 0.677098 AGCCTCTCAACGACTAGCGA 60.677 55.000 12.46 0.00 44.57 4.93
7745 7843 2.127118 CGAAAGTGCAGCTTGCCG 60.127 61.111 5.82 0.00 44.23 5.69
7768 7866 1.228154 GTTTCCCTGTCGCCCTGTT 60.228 57.895 0.00 0.00 0.00 3.16
7779 7877 3.259876 TGTCGCCCTGTTAAGTCTTACAT 59.740 43.478 0.00 0.00 0.00 2.29
7797 7895 6.765036 TCTTACATCAAGCTCCAATCTGAATC 59.235 38.462 0.00 0.00 33.94 2.52
7798 7896 4.205587 ACATCAAGCTCCAATCTGAATCC 58.794 43.478 0.00 0.00 0.00 3.01
7806 7904 5.305644 AGCTCCAATCTGAATCCGTAGTAAT 59.694 40.000 0.00 0.00 0.00 1.89
7808 7906 5.853936 TCCAATCTGAATCCGTAGTAATGG 58.146 41.667 0.00 0.00 0.00 3.16
7809 7907 5.365605 TCCAATCTGAATCCGTAGTAATGGT 59.634 40.000 0.00 0.00 33.06 3.55
7823 7921 4.408993 GTAATGGTTTTCCTTTACGCGT 57.591 40.909 19.17 19.17 44.65 6.01
7852 7950 2.168728 GGTTGGAGAGTCATGAGGTACC 59.831 54.545 2.73 2.73 0.00 3.34
7859 7957 3.846588 AGAGTCATGAGGTACCCATTGTT 59.153 43.478 8.74 0.00 0.00 2.83
7904 8002 8.316640 AGTATAAGCTTCAGTTCAAGAAGTTG 57.683 34.615 0.00 0.00 43.36 3.16
7905 8003 7.934120 AGTATAAGCTTCAGTTCAAGAAGTTGT 59.066 33.333 0.00 0.00 43.36 3.32
7906 8004 5.491635 AAGCTTCAGTTCAAGAAGTTGTC 57.508 39.130 0.00 0.00 43.36 3.18
7907 8005 4.517285 AGCTTCAGTTCAAGAAGTTGTCA 58.483 39.130 0.00 0.00 43.36 3.58
7908 8006 4.574013 AGCTTCAGTTCAAGAAGTTGTCAG 59.426 41.667 0.00 0.00 43.36 3.51
7909 8007 4.572389 GCTTCAGTTCAAGAAGTTGTCAGA 59.428 41.667 0.00 0.00 43.36 3.27
7910 8008 5.503194 GCTTCAGTTCAAGAAGTTGTCAGAC 60.503 44.000 0.00 0.00 43.36 3.51
7911 8009 4.442706 TCAGTTCAAGAAGTTGTCAGACC 58.557 43.478 0.00 0.00 34.98 3.85
7912 8010 4.081142 TCAGTTCAAGAAGTTGTCAGACCA 60.081 41.667 0.00 0.00 34.98 4.02
7913 8011 4.034510 CAGTTCAAGAAGTTGTCAGACCAC 59.965 45.833 0.00 0.00 34.98 4.16
7914 8012 3.194005 TCAAGAAGTTGTCAGACCACC 57.806 47.619 1.08 0.00 34.98 4.61
7915 8013 2.771943 TCAAGAAGTTGTCAGACCACCT 59.228 45.455 1.08 0.00 34.98 4.00
7916 8014 3.964688 TCAAGAAGTTGTCAGACCACCTA 59.035 43.478 1.08 0.00 34.98 3.08
7917 8015 4.058817 CAAGAAGTTGTCAGACCACCTAC 58.941 47.826 1.08 0.00 0.00 3.18
7918 8016 3.577919 AGAAGTTGTCAGACCACCTACT 58.422 45.455 1.08 0.00 0.00 2.57
7919 8017 3.322254 AGAAGTTGTCAGACCACCTACTG 59.678 47.826 1.08 0.00 35.72 2.74
7928 8026 5.869888 GTCAGACCACCTACTGTAAGAAATG 59.130 44.000 0.00 0.00 37.43 2.32
7938 8036 5.424121 ACTGTAAGAAATGTGTGCTTCAC 57.576 39.130 5.83 5.83 41.90 3.18
7939 8037 5.126067 ACTGTAAGAAATGTGTGCTTCACT 58.874 37.500 12.23 0.00 42.00 3.41
7948 8046 4.556942 TGTGTGCTTCACTCTTGAAATG 57.443 40.909 12.23 0.00 46.27 2.32
7956 8054 6.369890 TGCTTCACTCTTGAAATGATGTACTC 59.630 38.462 0.00 0.00 41.34 2.59
7958 8056 6.611613 TCACTCTTGAAATGATGTACTCCT 57.388 37.500 0.00 0.00 0.00 3.69
7961 8059 5.485353 ACTCTTGAAATGATGTACTCCTGGA 59.515 40.000 0.00 0.00 0.00 3.86
7962 8060 5.734720 TCTTGAAATGATGTACTCCTGGAC 58.265 41.667 0.00 0.00 0.00 4.02
7963 8061 5.248248 TCTTGAAATGATGTACTCCTGGACA 59.752 40.000 0.00 0.00 0.00 4.02
7964 8062 5.698741 TGAAATGATGTACTCCTGGACAT 57.301 39.130 0.00 0.00 38.99 3.06
7965 8063 6.806668 TGAAATGATGTACTCCTGGACATA 57.193 37.500 0.00 0.00 36.42 2.29
7966 8064 7.379059 TGAAATGATGTACTCCTGGACATAT 57.621 36.000 0.00 0.00 36.42 1.78
7967 8065 8.491045 TGAAATGATGTACTCCTGGACATATA 57.509 34.615 0.00 0.00 36.42 0.86
7968 8066 8.367911 TGAAATGATGTACTCCTGGACATATAC 58.632 37.037 0.00 0.00 36.42 1.47
7969 8067 8.497910 AAATGATGTACTCCTGGACATATACT 57.502 34.615 0.00 0.00 36.42 2.12
7970 8068 8.497910 AATGATGTACTCCTGGACATATACTT 57.502 34.615 0.00 0.00 36.42 2.24
7971 8069 7.914427 TGATGTACTCCTGGACATATACTTT 57.086 36.000 0.00 0.00 36.42 2.66
7972 8070 7.952671 TGATGTACTCCTGGACATATACTTTC 58.047 38.462 0.00 0.00 36.42 2.62
7973 8071 7.785028 TGATGTACTCCTGGACATATACTTTCT 59.215 37.037 0.00 0.00 36.42 2.52
7974 8072 7.348080 TGTACTCCTGGACATATACTTTCTG 57.652 40.000 0.00 0.00 0.00 3.02
7975 8073 5.283457 ACTCCTGGACATATACTTTCTGC 57.717 43.478 0.00 0.00 0.00 4.26
7976 8074 4.965532 ACTCCTGGACATATACTTTCTGCT 59.034 41.667 0.00 0.00 0.00 4.24
7977 8075 5.426833 ACTCCTGGACATATACTTTCTGCTT 59.573 40.000 0.00 0.00 0.00 3.91
7978 8076 6.069963 ACTCCTGGACATATACTTTCTGCTTT 60.070 38.462 0.00 0.00 0.00 3.51
7979 8077 7.125811 ACTCCTGGACATATACTTTCTGCTTTA 59.874 37.037 0.00 0.00 0.00 1.85
7980 8078 7.272978 TCCTGGACATATACTTTCTGCTTTAC 58.727 38.462 0.00 0.00 0.00 2.01
7981 8079 7.125811 TCCTGGACATATACTTTCTGCTTTACT 59.874 37.037 0.00 0.00 0.00 2.24
7982 8080 8.421784 CCTGGACATATACTTTCTGCTTTACTA 58.578 37.037 0.00 0.00 0.00 1.82
7983 8081 9.250624 CTGGACATATACTTTCTGCTTTACTAC 57.749 37.037 0.00 0.00 0.00 2.73
7984 8082 8.978472 TGGACATATACTTTCTGCTTTACTACT 58.022 33.333 0.00 0.00 0.00 2.57
7985 8083 9.250624 GGACATATACTTTCTGCTTTACTACTG 57.749 37.037 0.00 0.00 0.00 2.74
7989 8087 9.988815 ATATACTTTCTGCTTTACTACTGATGG 57.011 33.333 0.00 0.00 0.00 3.51
7990 8088 6.360370 ACTTTCTGCTTTACTACTGATGGA 57.640 37.500 0.00 0.00 0.00 3.41
7991 8089 6.402222 ACTTTCTGCTTTACTACTGATGGAG 58.598 40.000 0.00 0.00 0.00 3.86
7992 8090 6.014156 ACTTTCTGCTTTACTACTGATGGAGT 60.014 38.462 0.00 0.00 38.88 3.85
7993 8091 7.178628 ACTTTCTGCTTTACTACTGATGGAGTA 59.821 37.037 0.00 0.00 35.96 2.59
7994 8092 6.452494 TCTGCTTTACTACTGATGGAGTAC 57.548 41.667 0.00 0.00 35.96 2.73
7995 8093 6.188407 TCTGCTTTACTACTGATGGAGTACT 58.812 40.000 0.00 0.00 35.96 2.73
7996 8094 7.344134 TCTGCTTTACTACTGATGGAGTACTA 58.656 38.462 0.00 0.00 35.96 1.82
7997 8095 7.282675 TCTGCTTTACTACTGATGGAGTACTAC 59.717 40.741 0.00 0.00 35.96 2.73
7998 8096 7.117397 TGCTTTACTACTGATGGAGTACTACT 58.883 38.462 6.66 0.00 35.96 2.57
7999 8097 7.614583 TGCTTTACTACTGATGGAGTACTACTT 59.385 37.037 6.66 0.00 35.96 2.24
8000 8098 9.118300 GCTTTACTACTGATGGAGTACTACTTA 57.882 37.037 6.66 0.00 35.96 2.24
8004 8102 8.680039 ACTACTGATGGAGTACTACTTATGTC 57.320 38.462 6.66 0.00 35.96 3.06
8005 8103 8.496088 ACTACTGATGGAGTACTACTTATGTCT 58.504 37.037 6.66 0.00 35.96 3.41
8006 8104 7.575414 ACTGATGGAGTACTACTTATGTCTG 57.425 40.000 6.66 4.11 30.86 3.51
8007 8105 7.120051 ACTGATGGAGTACTACTTATGTCTGT 58.880 38.462 6.66 4.65 30.86 3.41
8008 8106 7.616150 ACTGATGGAGTACTACTTATGTCTGTT 59.384 37.037 6.66 0.00 30.86 3.16
8009 8107 8.362464 TGATGGAGTACTACTTATGTCTGTTT 57.638 34.615 6.66 0.00 0.00 2.83
8010 8108 8.812972 TGATGGAGTACTACTTATGTCTGTTTT 58.187 33.333 6.66 0.00 0.00 2.43
8013 8111 8.526147 TGGAGTACTACTTATGTCTGTTTTACC 58.474 37.037 6.66 0.00 0.00 2.85
8014 8112 8.747471 GGAGTACTACTTATGTCTGTTTTACCT 58.253 37.037 0.00 0.00 0.00 3.08
8015 8113 9.570488 GAGTACTACTTATGTCTGTTTTACCTG 57.430 37.037 0.00 0.00 0.00 4.00
8016 8114 8.529476 AGTACTACTTATGTCTGTTTTACCTGG 58.471 37.037 0.00 0.00 0.00 4.45
8017 8115 7.549147 ACTACTTATGTCTGTTTTACCTGGA 57.451 36.000 0.00 0.00 0.00 3.86
8018 8116 7.970102 ACTACTTATGTCTGTTTTACCTGGAA 58.030 34.615 0.00 0.00 0.00 3.53
8019 8117 8.095169 ACTACTTATGTCTGTTTTACCTGGAAG 58.905 37.037 0.00 0.00 0.00 3.46
8020 8118 7.074653 ACTTATGTCTGTTTTACCTGGAAGA 57.925 36.000 0.00 0.00 34.07 2.87
8118 9742 2.227388 CTGGATTGAGACAGCAACAACC 59.773 50.000 0.00 0.00 0.00 3.77
8128 9752 0.470766 AGCAACAACCTGGACCGTAA 59.529 50.000 0.00 0.00 0.00 3.18
8135 9759 1.640917 ACCTGGACCGTAACACTGAT 58.359 50.000 0.00 0.00 0.00 2.90
8302 9928 6.518208 AGTACTCTACTGTTTTAGCTCCAG 57.482 41.667 0.00 0.00 37.69 3.86
8352 9985 1.996191 GGATGAAGACAGCAACGACTC 59.004 52.381 0.00 0.00 33.73 3.36
8382 10015 2.153401 ACTAACCCTGCTGCACCCA 61.153 57.895 0.00 0.00 0.00 4.51
8386 10019 2.987547 CCCTGCTGCACCCACAAG 60.988 66.667 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.254508 TCCGTATTTTTGGCTTATTTTAGCAAT 58.745 29.630 0.00 0.00 43.02 3.56
35 36 7.603651 TCCGTATTTTTGGCTTATTTTAGCAA 58.396 30.769 0.00 0.00 43.02 3.91
62 63 4.564940 ACAAAAGCTTCTTTCTCAGCAG 57.435 40.909 0.00 0.00 38.61 4.24
63 64 4.641989 AGAACAAAAGCTTCTTTCTCAGCA 59.358 37.500 0.00 0.00 38.61 4.41
64 65 5.180367 AGAACAAAAGCTTCTTTCTCAGC 57.820 39.130 0.00 0.00 36.16 4.26
78 79 3.469008 TCCTGCTTCTCGAGAACAAAA 57.531 42.857 23.74 13.33 0.00 2.44
80 81 2.562738 TGATCCTGCTTCTCGAGAACAA 59.437 45.455 23.74 13.40 0.00 2.83
81 82 2.171003 TGATCCTGCTTCTCGAGAACA 58.829 47.619 23.74 22.21 0.00 3.18
88 89 5.803020 AATTAACGTTGATCCTGCTTCTC 57.197 39.130 11.99 0.00 0.00 2.87
110 111 6.660094 ACCCATCAATTAGCCGTTAGTTTTTA 59.340 34.615 0.00 0.00 0.00 1.52
159 163 1.938585 TTACCTACTGCTCAGGTGCT 58.061 50.000 12.88 0.00 46.08 4.40
178 182 8.008513 TCGAACTGCCTCTTATACTTTAAGAT 57.991 34.615 0.00 0.00 33.61 2.40
181 185 7.400599 TCTCGAACTGCCTCTTATACTTTAA 57.599 36.000 0.00 0.00 0.00 1.52
182 186 7.122353 ACTTCTCGAACTGCCTCTTATACTTTA 59.878 37.037 0.00 0.00 0.00 1.85
193 197 0.318762 GACCACTTCTCGAACTGCCT 59.681 55.000 0.00 0.00 0.00 4.75
227 231 7.611855 ACTTATTTTGGAACAGAGGGAATACAG 59.388 37.037 0.00 0.00 42.39 2.74
228 232 7.393234 CACTTATTTTGGAACAGAGGGAATACA 59.607 37.037 0.00 0.00 42.39 2.29
229 233 7.393515 ACACTTATTTTGGAACAGAGGGAATAC 59.606 37.037 0.00 0.00 42.39 1.89
230 234 7.466804 ACACTTATTTTGGAACAGAGGGAATA 58.533 34.615 0.00 0.00 42.39 1.75
231 235 6.314917 ACACTTATTTTGGAACAGAGGGAAT 58.685 36.000 0.00 0.00 42.39 3.01
232 236 5.701224 ACACTTATTTTGGAACAGAGGGAA 58.299 37.500 0.00 0.00 42.39 3.97
233 237 5.319043 ACACTTATTTTGGAACAGAGGGA 57.681 39.130 0.00 0.00 42.39 4.20
234 238 7.703058 AATACACTTATTTTGGAACAGAGGG 57.297 36.000 0.00 0.00 42.39 4.30
303 318 9.515226 AACTAAGCAATAATTTTGTACTCTCCA 57.485 29.630 0.00 0.00 0.00 3.86
335 350 4.890088 TGGAGGTGACAGTTGTACATTAC 58.110 43.478 0.00 0.00 0.00 1.89
388 403 2.496470 GTCTCGGTCAAGGTACCAATCT 59.504 50.000 15.94 0.00 39.71 2.40
404 419 2.801111 CTGCATTCATCCATCAGTCTCG 59.199 50.000 0.00 0.00 0.00 4.04
421 436 2.049156 CTCCAAGTCGTCGCTGCA 60.049 61.111 0.00 0.00 0.00 4.41
422 437 3.482783 GCTCCAAGTCGTCGCTGC 61.483 66.667 0.00 0.00 0.00 5.25
429 444 0.647410 CAATGCTACGCTCCAAGTCG 59.353 55.000 0.00 0.00 0.00 4.18
436 451 1.141019 TCCGGTCAATGCTACGCTC 59.859 57.895 0.00 0.00 0.00 5.03
470 486 1.333619 TCAACAAGCGCCAGAAACTTC 59.666 47.619 2.29 0.00 0.00 3.01
525 541 0.173935 TGTGAAGTCGACGTGGTTGT 59.826 50.000 9.23 0.00 0.00 3.32
529 545 2.365068 CGCTGTGAAGTCGACGTGG 61.365 63.158 9.23 0.00 0.00 4.94
583 599 4.290622 CAGTTGGGCTGCAGGGGT 62.291 66.667 17.12 0.00 38.52 4.95
602 618 1.555477 CAGACACGGTTTTTGCCAAC 58.445 50.000 0.00 0.00 0.00 3.77
603 619 0.457851 CCAGACACGGTTTTTGCCAA 59.542 50.000 0.00 0.00 0.00 4.52
606 622 0.736053 TGACCAGACACGGTTTTTGC 59.264 50.000 0.00 0.00 40.22 3.68
618 634 0.697079 AGGGAGTACGACTGACCAGA 59.303 55.000 3.76 0.00 0.00 3.86
621 637 1.375098 CGGAGGGAGTACGACTGACC 61.375 65.000 0.00 0.00 0.00 4.02
629 645 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
630 646 5.190132 TGAATAATTTGGAACGGAGGGAGTA 59.810 40.000 0.00 0.00 0.00 2.59
631 647 4.018779 TGAATAATTTGGAACGGAGGGAGT 60.019 41.667 0.00 0.00 0.00 3.85
632 648 4.523083 TGAATAATTTGGAACGGAGGGAG 58.477 43.478 0.00 0.00 0.00 4.30
633 649 4.577988 TGAATAATTTGGAACGGAGGGA 57.422 40.909 0.00 0.00 0.00 4.20
634 650 4.024048 CGATGAATAATTTGGAACGGAGGG 60.024 45.833 0.00 0.00 0.00 4.30
635 651 4.554723 GCGATGAATAATTTGGAACGGAGG 60.555 45.833 0.00 0.00 0.00 4.30
636 652 4.273480 AGCGATGAATAATTTGGAACGGAG 59.727 41.667 0.00 0.00 0.00 4.63
637 653 4.035091 CAGCGATGAATAATTTGGAACGGA 59.965 41.667 0.00 0.00 0.00 4.69
638 654 4.035091 TCAGCGATGAATAATTTGGAACGG 59.965 41.667 0.00 0.00 0.00 4.44
639 655 5.155509 TCAGCGATGAATAATTTGGAACG 57.844 39.130 0.00 0.00 0.00 3.95
640 656 7.043192 CCATTTCAGCGATGAATAATTTGGAAC 60.043 37.037 17.94 0.00 0.00 3.62
641 657 6.979817 CCATTTCAGCGATGAATAATTTGGAA 59.020 34.615 17.94 0.00 0.00 3.53
642 658 6.320926 TCCATTTCAGCGATGAATAATTTGGA 59.679 34.615 17.94 18.97 0.00 3.53
643 659 6.506147 TCCATTTCAGCGATGAATAATTTGG 58.494 36.000 17.94 17.25 0.00 3.28
644 660 7.650504 ACATCCATTTCAGCGATGAATAATTTG 59.349 33.333 17.94 14.19 37.44 2.32
645 661 7.719483 ACATCCATTTCAGCGATGAATAATTT 58.281 30.769 17.94 0.00 37.44 1.82
646 662 7.281040 ACATCCATTTCAGCGATGAATAATT 57.719 32.000 17.94 0.00 37.44 1.40
647 663 6.889301 ACATCCATTTCAGCGATGAATAAT 57.111 33.333 17.94 5.82 37.44 1.28
648 664 7.879677 AGATACATCCATTTCAGCGATGAATAA 59.120 33.333 17.94 3.26 37.44 1.40
649 665 7.389232 AGATACATCCATTTCAGCGATGAATA 58.611 34.615 17.94 8.70 37.44 1.75
650 666 6.236409 AGATACATCCATTTCAGCGATGAAT 58.764 36.000 17.94 2.65 37.44 2.57
651 667 5.614308 AGATACATCCATTTCAGCGATGAA 58.386 37.500 12.91 12.91 37.44 2.57
652 668 5.219343 AGATACATCCATTTCAGCGATGA 57.781 39.130 0.00 0.00 37.44 2.92
653 669 7.425577 TTTAGATACATCCATTTCAGCGATG 57.574 36.000 0.00 0.00 39.44 3.84
654 670 7.716998 AGTTTTAGATACATCCATTTCAGCGAT 59.283 33.333 0.00 0.00 0.00 4.58
655 671 7.047891 AGTTTTAGATACATCCATTTCAGCGA 58.952 34.615 0.00 0.00 0.00 4.93
656 672 7.251704 AGTTTTAGATACATCCATTTCAGCG 57.748 36.000 0.00 0.00 0.00 5.18
683 699 9.151471 GCACGTATGGATGTATCTAAATGTATT 57.849 33.333 0.00 0.00 0.00 1.89
684 700 7.488150 CGCACGTATGGATGTATCTAAATGTAT 59.512 37.037 0.00 0.00 0.00 2.29
685 701 6.804783 CGCACGTATGGATGTATCTAAATGTA 59.195 38.462 0.00 0.00 0.00 2.29
686 702 5.633601 CGCACGTATGGATGTATCTAAATGT 59.366 40.000 0.00 0.00 0.00 2.71
687 703 5.861787 TCGCACGTATGGATGTATCTAAATG 59.138 40.000 0.00 0.00 0.00 2.32
688 704 5.862323 GTCGCACGTATGGATGTATCTAAAT 59.138 40.000 0.00 0.00 0.00 1.40
689 705 5.217393 GTCGCACGTATGGATGTATCTAAA 58.783 41.667 0.00 0.00 0.00 1.85
690 706 4.276431 TGTCGCACGTATGGATGTATCTAA 59.724 41.667 0.00 0.00 0.00 2.10
691 707 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
692 708 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
693 709 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
694 710 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
695 711 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
696 712 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
697 713 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
698 714 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
699 715 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
700 716 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
701 717 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
702 718 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
703 719 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
704 720 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
705 721 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
706 722 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
707 723 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
708 724 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
709 725 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
710 726 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
711 727 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
712 728 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
713 729 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
714 730 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
715 731 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
716 732 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
717 733 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
718 734 1.962100 GATACTCCCTCCGTTCCGAAT 59.038 52.381 0.00 0.00 0.00 3.34
719 735 1.064166 AGATACTCCCTCCGTTCCGAA 60.064 52.381 0.00 0.00 0.00 4.30
720 736 0.549950 AGATACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
721 737 2.267174 TAGATACTCCCTCCGTTCCG 57.733 55.000 0.00 0.00 0.00 4.30
722 738 6.095720 CAGATAATAGATACTCCCTCCGTTCC 59.904 46.154 0.00 0.00 0.00 3.62
723 739 6.660094 ACAGATAATAGATACTCCCTCCGTTC 59.340 42.308 0.00 0.00 0.00 3.95
724 740 6.553857 ACAGATAATAGATACTCCCTCCGTT 58.446 40.000 0.00 0.00 0.00 4.44
725 741 6.142259 ACAGATAATAGATACTCCCTCCGT 57.858 41.667 0.00 0.00 0.00 4.69
726 742 7.340256 AGTACAGATAATAGATACTCCCTCCG 58.660 42.308 0.00 0.00 0.00 4.63
727 743 8.554011 AGAGTACAGATAATAGATACTCCCTCC 58.446 40.741 6.18 0.00 41.71 4.30
728 744 9.391006 CAGAGTACAGATAATAGATACTCCCTC 57.609 40.741 6.18 0.00 41.71 4.30
729 745 7.832187 GCAGAGTACAGATAATAGATACTCCCT 59.168 40.741 6.18 0.00 41.71 4.20
730 746 7.832187 AGCAGAGTACAGATAATAGATACTCCC 59.168 40.741 6.18 0.00 41.71 4.30
731 747 8.801882 AGCAGAGTACAGATAATAGATACTCC 57.198 38.462 6.18 0.00 41.71 3.85
739 755 8.228464 CGACGAAATAGCAGAGTACAGATAATA 58.772 37.037 0.00 0.00 0.00 0.98
856 875 4.083324 TCGGATTTGCAGAATGAACTCAAC 60.083 41.667 0.00 0.00 39.69 3.18
1185 1205 3.537874 CCCGTCCCGAGGATCACC 61.538 72.222 0.00 0.00 32.73 4.02
1196 1216 2.181445 GAGGACCAAGTTCCCCGTCC 62.181 65.000 0.00 0.00 44.31 4.79
1197 1217 1.295746 GAGGACCAAGTTCCCCGTC 59.704 63.158 0.00 0.00 36.12 4.79
1280 1300 0.036952 ACTCAGCACGAACCTCATGG 60.037 55.000 0.00 0.00 39.83 3.66
1330 1350 1.285078 GTCATTAGGGCCCTTCCAAGT 59.715 52.381 34.04 5.31 36.21 3.16
1425 1445 1.031571 CCATGGTGCGGCAGTACAAT 61.032 55.000 1.18 0.00 34.50 2.71
1458 1478 2.568623 ATGTTCCTCCACCAACAGTC 57.431 50.000 0.00 0.00 35.99 3.51
1464 1484 2.039418 CTCCGATATGTTCCTCCACCA 58.961 52.381 0.00 0.00 0.00 4.17
1514 1534 1.847328 TTCGTCTCCTATGCCAGTGA 58.153 50.000 0.00 0.00 0.00 3.41
1546 1566 0.749649 GAGCCATCGGAGACTGTGAT 59.250 55.000 0.00 0.00 42.51 3.06
1671 1691 1.204704 CCACACGAGGCATAGAAGTCA 59.795 52.381 0.00 0.00 0.00 3.41
1818 1838 4.512571 ACAGGCAAAGCAACAAAATGATTC 59.487 37.500 0.00 0.00 0.00 2.52
1830 1850 1.180456 CCATCACCACAGGCAAAGCA 61.180 55.000 0.00 0.00 0.00 3.91
1843 1863 0.036306 AAGTTGTCCGGGACCATCAC 59.964 55.000 23.81 14.57 0.00 3.06
1913 1933 1.155889 TGCTGTACACGAGCAATTGG 58.844 50.000 7.72 0.00 43.47 3.16
1965 1985 2.420129 GCACCTTGACGGGTCTTCATAT 60.420 50.000 0.00 0.00 37.52 1.78
2001 2021 3.004106 GCTTCAATGTGTCAACAAGCTCT 59.996 43.478 0.00 0.00 40.46 4.09
2018 2038 1.199789 CGCCATTGTTGCTAAGCTTCA 59.800 47.619 0.00 0.00 0.00 3.02
2023 2043 3.624861 AGATTCTCGCCATTGTTGCTAAG 59.375 43.478 0.00 0.00 0.00 2.18
2109 2129 3.074412 CAGTTACACAGCACCTTAAGGG 58.926 50.000 25.31 14.87 40.27 3.95
2211 2231 7.990917 TGTTATGCTGTTAAGTTCACAAGAAA 58.009 30.769 0.00 0.00 35.08 2.52
2263 2283 9.607285 CATATACCGAATACTTGCAAATTTACC 57.393 33.333 0.00 0.00 0.00 2.85
2284 2304 6.246163 TGAAATAGCGTCTCCCTCTCATATA 58.754 40.000 0.00 0.00 0.00 0.86
2295 2315 7.938563 ATGAGATTTACTGAAATAGCGTCTC 57.061 36.000 0.00 0.00 35.33 3.36
2309 2329 9.013490 GCACATGAAAACATGTATGAGATTTAC 57.987 33.333 14.06 0.00 43.24 2.01
2310 2330 8.738106 TGCACATGAAAACATGTATGAGATTTA 58.262 29.630 14.06 0.00 43.24 1.40
2330 2350 5.654209 TGATCTCTACTAACTGAGTGCACAT 59.346 40.000 21.04 3.82 39.39 3.21
2458 2486 3.397955 AGGCTTCCAATAATCGGGGTTAT 59.602 43.478 0.00 0.00 0.00 1.89
2660 2693 4.752146 CCTCCAATTTCATTTGAAGAGCC 58.248 43.478 0.00 0.00 35.21 4.70
2690 2723 4.178956 AGCTAACAAAGGGAAACTCCAA 57.821 40.909 0.00 0.00 38.64 3.53
2849 2890 2.616842 TGAAAGGGAGCGTTTTTCACTC 59.383 45.455 5.13 0.00 36.28 3.51
3042 3084 3.365472 TCTCTCATCTCCGTGAATGGAA 58.635 45.455 0.00 0.00 37.64 3.53
3216 3261 1.312815 GAGTTGTCTTGCAGCACCTT 58.687 50.000 0.00 0.00 0.00 3.50
3217 3262 0.536006 GGAGTTGTCTTGCAGCACCT 60.536 55.000 0.00 0.00 36.45 4.00
3218 3263 1.845809 CGGAGTTGTCTTGCAGCACC 61.846 60.000 0.00 0.00 36.14 5.01
3219 3264 1.571460 CGGAGTTGTCTTGCAGCAC 59.429 57.895 0.00 0.00 0.00 4.40
3220 3265 2.253758 GCGGAGTTGTCTTGCAGCA 61.254 57.895 0.00 0.00 0.00 4.41
3221 3266 2.558313 GCGGAGTTGTCTTGCAGC 59.442 61.111 0.00 0.00 0.00 5.25
3222 3267 0.037326 TAGGCGGAGTTGTCTTGCAG 60.037 55.000 0.00 0.00 0.00 4.41
3223 3268 0.613260 ATAGGCGGAGTTGTCTTGCA 59.387 50.000 0.00 0.00 0.00 4.08
3224 3269 1.009829 CATAGGCGGAGTTGTCTTGC 58.990 55.000 0.00 0.00 0.00 4.01
3225 3270 2.386661 ACATAGGCGGAGTTGTCTTG 57.613 50.000 0.00 0.00 0.00 3.02
3226 3271 2.699954 CAACATAGGCGGAGTTGTCTT 58.300 47.619 9.70 0.00 38.20 3.01
3227 3272 2.386661 CAACATAGGCGGAGTTGTCT 57.613 50.000 9.70 0.00 38.20 3.41
3501 3546 1.134788 GTAGCACGCCACTAAGGATGT 60.135 52.381 0.00 0.00 41.22 3.06
3660 3705 0.460811 TGCTGCATCAACTAGCTCCG 60.461 55.000 0.00 0.00 38.25 4.63
4368 4413 0.460284 CGTTCTAGCGACCTTGGCAT 60.460 55.000 0.00 0.00 0.00 4.40
4708 4753 3.133365 ATATGCCCGACCCCTTGCC 62.133 63.158 0.00 0.00 0.00 4.52
4842 4887 4.507969 CCAAGAGTTGGCCTGCTT 57.492 55.556 3.32 0.00 45.17 3.91
5422 5468 5.552870 TCTTATCATAGGCCTTCTCCAAC 57.447 43.478 12.58 0.00 0.00 3.77
5801 5847 3.407698 TGAAACCGCACATCATGTACTT 58.592 40.909 0.00 0.00 0.00 2.24
6306 6352 2.158986 CCTCTCTTGACATTCTCCGCAT 60.159 50.000 0.00 0.00 0.00 4.73
6337 6383 0.740737 CCTCCCATGTCAAAATCGGC 59.259 55.000 0.00 0.00 0.00 5.54
6555 6603 1.740025 GTAGGCCAATCAAGCACAGAC 59.260 52.381 5.01 0.00 0.00 3.51
6843 6914 3.287222 ACACCAATAAGTGCACAGTGTT 58.713 40.909 21.04 8.14 41.67 3.32
6909 6981 4.215399 TGATTTTACAGAAAAGGCACCTCG 59.785 41.667 0.00 0.00 37.94 4.63
7188 7271 1.352156 CGCACCGTACAGCTTCTTCC 61.352 60.000 0.00 0.00 0.00 3.46
7263 7346 6.685403 CGTTTTCCAACATGAATATAACGGAC 59.315 38.462 0.00 0.00 34.65 4.79
7353 7436 5.890419 AGAATTTTCCATCTGTTCCATCTCC 59.110 40.000 0.00 0.00 0.00 3.71
7472 7558 4.452825 TGTCCAAACCGACACATTAAAGA 58.547 39.130 0.00 0.00 37.85 2.52
7474 7560 4.822350 TGATGTCCAAACCGACACATTAAA 59.178 37.500 0.00 0.00 45.19 1.52
7506 7592 3.926616 AGAACAACCAAGACATACCGAG 58.073 45.455 0.00 0.00 0.00 4.63
7509 7595 7.923414 AAGATAAGAACAACCAAGACATACC 57.077 36.000 0.00 0.00 0.00 2.73
7510 7596 8.999431 TCAAAGATAAGAACAACCAAGACATAC 58.001 33.333 0.00 0.00 0.00 2.39
7516 7602 6.583806 GCACATCAAAGATAAGAACAACCAAG 59.416 38.462 0.00 0.00 0.00 3.61
7517 7603 6.040278 TGCACATCAAAGATAAGAACAACCAA 59.960 34.615 0.00 0.00 0.00 3.67
7518 7604 5.534278 TGCACATCAAAGATAAGAACAACCA 59.466 36.000 0.00 0.00 0.00 3.67
7524 7610 6.966632 GCGTATTTGCACATCAAAGATAAGAA 59.033 34.615 0.00 0.00 46.68 2.52
7547 7633 1.299468 CCGTAGCTTCTAGCAGGCG 60.299 63.158 0.00 2.68 45.56 5.52
7554 7640 1.432251 GTGCTCGCCGTAGCTTCTA 59.568 57.895 0.00 0.00 43.19 2.10
7564 7650 0.530870 GAGTTAGGATGGTGCTCGCC 60.531 60.000 0.00 0.00 0.00 5.54
7572 7658 1.132500 GGACTGGGGAGTTAGGATGG 58.868 60.000 0.00 0.00 0.00 3.51
7586 7672 1.006832 CGGCGTTGGATTTAGGACTG 58.993 55.000 0.00 0.00 0.00 3.51
7601 7687 3.777925 CGACAAACTCCAGCGGCG 61.778 66.667 0.51 0.51 0.00 6.46
7603 7689 1.284982 CTGACGACAAACTCCAGCGG 61.285 60.000 0.00 0.00 0.00 5.52
7604 7690 0.318699 TCTGACGACAAACTCCAGCG 60.319 55.000 0.00 0.00 0.00 5.18
7620 7706 1.159285 TTTGCTGCTGAACGGATCTG 58.841 50.000 0.00 0.00 0.00 2.90
7625 7711 0.109597 GGTGATTTGCTGCTGAACGG 60.110 55.000 0.00 0.00 0.00 4.44
7630 7716 2.512485 TGTTTGGTGATTTGCTGCTG 57.488 45.000 0.00 0.00 0.00 4.41
7633 7719 2.156117 CGCATTGTTTGGTGATTTGCTG 59.844 45.455 0.00 0.00 0.00 4.41
7643 7729 2.048316 GTGGCCCGCATTGTTTGG 60.048 61.111 0.00 0.00 0.00 3.28
7644 7730 0.667184 GAAGTGGCCCGCATTGTTTG 60.667 55.000 0.00 0.00 0.00 2.93
7645 7731 0.827507 AGAAGTGGCCCGCATTGTTT 60.828 50.000 0.00 0.00 0.00 2.83
7648 7734 2.703798 CCAGAAGTGGCCCGCATTG 61.704 63.158 0.00 0.00 36.89 2.82
7649 7735 2.361610 CCAGAAGTGGCCCGCATT 60.362 61.111 0.00 0.00 36.89 3.56
7650 7736 4.431131 CCCAGAAGTGGCCCGCAT 62.431 66.667 0.00 0.00 43.44 4.73
7657 7743 1.676967 GAAGCTGCCCCAGAAGTGG 60.677 63.158 0.00 0.00 44.56 4.00
7658 7744 0.959372 CTGAAGCTGCCCCAGAAGTG 60.959 60.000 11.91 0.00 32.44 3.16
7659 7745 1.377994 CTGAAGCTGCCCCAGAAGT 59.622 57.895 11.91 0.00 32.44 3.01
7660 7746 0.615331 TACTGAAGCTGCCCCAGAAG 59.385 55.000 20.81 3.98 32.44 2.85
7661 7747 0.615331 CTACTGAAGCTGCCCCAGAA 59.385 55.000 20.81 0.00 32.44 3.02
7662 7748 1.267574 CCTACTGAAGCTGCCCCAGA 61.268 60.000 20.81 7.83 32.44 3.86
7663 7749 1.222936 CCTACTGAAGCTGCCCCAG 59.777 63.158 14.71 14.71 34.12 4.45
7664 7750 2.971598 GCCTACTGAAGCTGCCCCA 61.972 63.158 0.00 0.00 0.00 4.96
7665 7751 2.124529 GCCTACTGAAGCTGCCCC 60.125 66.667 0.00 0.00 0.00 5.80
7670 7756 1.153289 CATGCCGCCTACTGAAGCT 60.153 57.895 0.00 0.00 0.00 3.74
7690 7776 3.616721 AAGCTGCACTCCCGTCGT 61.617 61.111 1.02 0.00 0.00 4.34
7691 7777 3.114616 CAAGCTGCACTCCCGTCG 61.115 66.667 1.02 0.00 0.00 5.12
7695 7781 2.331132 GCTGTCAAGCTGCACTCCC 61.331 63.158 1.02 0.00 46.60 4.30
7715 7813 2.921069 GCACTTTCGCTAGTCGTTGAGA 60.921 50.000 6.49 0.00 39.67 3.27
7717 7815 1.269361 TGCACTTTCGCTAGTCGTTGA 60.269 47.619 6.49 0.00 39.67 3.18
7768 7866 7.044181 CAGATTGGAGCTTGATGTAAGACTTA 58.956 38.462 0.00 0.00 38.76 2.24
7779 7877 2.237143 ACGGATTCAGATTGGAGCTTGA 59.763 45.455 0.00 0.00 0.00 3.02
7797 7895 5.446340 GCGTAAAGGAAAACCATTACTACGG 60.446 44.000 10.92 0.00 32.42 4.02
7798 7896 5.553721 GCGTAAAGGAAAACCATTACTACG 58.446 41.667 10.92 0.00 34.32 3.51
7806 7904 0.308376 GCACGCGTAAAGGAAAACCA 59.692 50.000 13.44 0.00 0.00 3.67
7808 7906 1.670326 CTGCACGCGTAAAGGAAAAC 58.330 50.000 13.44 0.00 0.00 2.43
7809 7907 0.040781 GCTGCACGCGTAAAGGAAAA 60.041 50.000 13.44 0.00 0.00 2.29
7819 7917 4.764336 CCAACCATGCTGCACGCG 62.764 66.667 3.57 3.53 43.27 6.01
7823 7921 0.321919 GACTCTCCAACCATGCTGCA 60.322 55.000 4.13 4.13 0.00 4.41
7832 7930 3.528597 GGTACCTCATGACTCTCCAAC 57.471 52.381 4.06 0.00 0.00 3.77
7879 7977 7.934120 ACAACTTCTTGAACTGAAGCTTATACT 59.066 33.333 0.00 0.00 43.23 2.12
7904 8002 5.464030 TTTCTTACAGTAGGTGGTCTGAC 57.536 43.478 0.00 0.00 35.84 3.51
7905 8003 5.542635 ACATTTCTTACAGTAGGTGGTCTGA 59.457 40.000 0.00 0.00 35.84 3.27
7906 8004 5.639506 CACATTTCTTACAGTAGGTGGTCTG 59.360 44.000 0.00 0.00 37.65 3.51
7907 8005 5.307196 ACACATTTCTTACAGTAGGTGGTCT 59.693 40.000 0.00 0.00 0.00 3.85
7908 8006 5.408604 CACACATTTCTTACAGTAGGTGGTC 59.591 44.000 0.00 0.00 0.00 4.02
7909 8007 5.305585 CACACATTTCTTACAGTAGGTGGT 58.694 41.667 0.00 0.00 0.00 4.16
7910 8008 4.154195 GCACACATTTCTTACAGTAGGTGG 59.846 45.833 0.00 0.00 0.00 4.61
7911 8009 4.997395 AGCACACATTTCTTACAGTAGGTG 59.003 41.667 0.00 0.00 0.00 4.00
7912 8010 5.228945 AGCACACATTTCTTACAGTAGGT 57.771 39.130 0.00 0.00 0.00 3.08
7913 8011 5.700832 TGAAGCACACATTTCTTACAGTAGG 59.299 40.000 0.00 0.00 0.00 3.18
7914 8012 6.785488 TGAAGCACACATTTCTTACAGTAG 57.215 37.500 0.00 0.00 0.00 2.57
7928 8026 4.818534 TCATTTCAAGAGTGAAGCACAC 57.181 40.909 6.03 6.03 44.49 3.82
7938 8036 5.814705 GTCCAGGAGTACATCATTTCAAGAG 59.185 44.000 0.00 0.00 0.00 2.85
7939 8037 5.248248 TGTCCAGGAGTACATCATTTCAAGA 59.752 40.000 0.00 0.00 0.00 3.02
7948 8046 8.085296 CAGAAAGTATATGTCCAGGAGTACATC 58.915 40.741 0.00 0.00 37.50 3.06
7956 8054 7.275920 AGTAAAGCAGAAAGTATATGTCCAGG 58.724 38.462 0.00 0.00 0.00 4.45
7958 8056 8.978472 AGTAGTAAAGCAGAAAGTATATGTCCA 58.022 33.333 0.00 0.00 0.00 4.02
7963 8061 9.988815 CCATCAGTAGTAAAGCAGAAAGTATAT 57.011 33.333 0.00 0.00 0.00 0.86
7964 8062 9.197306 TCCATCAGTAGTAAAGCAGAAAGTATA 57.803 33.333 0.00 0.00 0.00 1.47
7965 8063 8.079211 TCCATCAGTAGTAAAGCAGAAAGTAT 57.921 34.615 0.00 0.00 0.00 2.12
7966 8064 7.178628 ACTCCATCAGTAGTAAAGCAGAAAGTA 59.821 37.037 0.00 0.00 31.37 2.24
7967 8065 6.014156 ACTCCATCAGTAGTAAAGCAGAAAGT 60.014 38.462 0.00 0.00 31.37 2.66
7968 8066 6.402222 ACTCCATCAGTAGTAAAGCAGAAAG 58.598 40.000 0.00 0.00 31.37 2.62
7969 8067 6.360370 ACTCCATCAGTAGTAAAGCAGAAA 57.640 37.500 0.00 0.00 31.37 2.52
7970 8068 6.663953 AGTACTCCATCAGTAGTAAAGCAGAA 59.336 38.462 0.00 0.00 39.21 3.02
7971 8069 6.188407 AGTACTCCATCAGTAGTAAAGCAGA 58.812 40.000 0.00 0.00 39.21 4.26
7972 8070 6.458232 AGTACTCCATCAGTAGTAAAGCAG 57.542 41.667 0.00 0.00 39.21 4.24
7973 8071 7.117397 AGTAGTACTCCATCAGTAGTAAAGCA 58.883 38.462 0.00 0.00 42.72 3.91
7974 8072 7.571080 AGTAGTACTCCATCAGTAGTAAAGC 57.429 40.000 0.00 0.00 42.72 3.51
7978 8076 9.775854 GACATAAGTAGTACTCCATCAGTAGTA 57.224 37.037 2.58 0.00 41.03 1.82
7979 8077 8.496088 AGACATAAGTAGTACTCCATCAGTAGT 58.504 37.037 2.58 0.00 42.91 2.73
7980 8078 8.779303 CAGACATAAGTAGTACTCCATCAGTAG 58.221 40.741 2.58 0.00 38.35 2.57
7981 8079 8.272889 ACAGACATAAGTAGTACTCCATCAGTA 58.727 37.037 2.58 0.00 36.43 2.74
7982 8080 7.120051 ACAGACATAAGTAGTACTCCATCAGT 58.880 38.462 2.58 0.54 39.41 3.41
7983 8081 7.575414 ACAGACATAAGTAGTACTCCATCAG 57.425 40.000 2.58 0.00 0.00 2.90
7984 8082 7.956328 AACAGACATAAGTAGTACTCCATCA 57.044 36.000 2.58 0.00 0.00 3.07
7987 8085 8.526147 GGTAAAACAGACATAAGTAGTACTCCA 58.474 37.037 2.58 0.00 0.00 3.86
7988 8086 8.747471 AGGTAAAACAGACATAAGTAGTACTCC 58.253 37.037 2.58 0.00 0.00 3.85
7989 8087 9.570488 CAGGTAAAACAGACATAAGTAGTACTC 57.430 37.037 2.58 0.00 0.00 2.59
7990 8088 8.529476 CCAGGTAAAACAGACATAAGTAGTACT 58.471 37.037 0.00 0.00 0.00 2.73
7991 8089 8.526147 TCCAGGTAAAACAGACATAAGTAGTAC 58.474 37.037 0.00 0.00 0.00 2.73
7992 8090 8.654485 TCCAGGTAAAACAGACATAAGTAGTA 57.346 34.615 0.00 0.00 0.00 1.82
7993 8091 7.549147 TCCAGGTAAAACAGACATAAGTAGT 57.451 36.000 0.00 0.00 0.00 2.73
7994 8092 8.311836 TCTTCCAGGTAAAACAGACATAAGTAG 58.688 37.037 0.00 0.00 0.00 2.57
7995 8093 8.092687 GTCTTCCAGGTAAAACAGACATAAGTA 58.907 37.037 0.00 0.00 32.52 2.24
7996 8094 6.935208 GTCTTCCAGGTAAAACAGACATAAGT 59.065 38.462 0.00 0.00 32.52 2.24
7997 8095 6.934645 TGTCTTCCAGGTAAAACAGACATAAG 59.065 38.462 0.00 0.00 36.57 1.73
7998 8096 6.833041 TGTCTTCCAGGTAAAACAGACATAA 58.167 36.000 0.00 0.00 36.57 1.90
7999 8097 6.428083 TGTCTTCCAGGTAAAACAGACATA 57.572 37.500 0.00 0.00 36.57 2.29
8000 8098 5.304686 TGTCTTCCAGGTAAAACAGACAT 57.695 39.130 0.00 0.00 36.57 3.06
8001 8099 4.764050 TGTCTTCCAGGTAAAACAGACA 57.236 40.909 0.00 0.00 38.61 3.41
8002 8100 9.614792 AATATATGTCTTCCAGGTAAAACAGAC 57.385 33.333 0.00 0.00 32.81 3.51
8003 8101 9.613428 CAATATATGTCTTCCAGGTAAAACAGA 57.387 33.333 0.00 0.00 0.00 3.41
8004 8102 9.396022 ACAATATATGTCTTCCAGGTAAAACAG 57.604 33.333 0.00 0.00 37.96 3.16
8118 9742 1.469251 CCGATCAGTGTTACGGTCCAG 60.469 57.143 13.82 0.00 40.42 3.86
8128 9752 0.898320 CTTGGAGTCCCGATCAGTGT 59.102 55.000 6.74 0.00 34.29 3.55
8135 9759 2.111999 CTGCCAACTTGGAGTCCCGA 62.112 60.000 12.37 0.00 40.96 5.14
8302 9928 6.981559 GTCTCAGTCCAGACTTGTATATTTCC 59.018 42.308 0.00 0.00 40.20 3.13
8352 9985 1.204941 AGGGTTAGTGCTACGCTCAAG 59.795 52.381 0.00 0.00 34.10 3.02
8382 10015 7.064229 TCTGTAGTAACAAAATTTCCCCTTGT 58.936 34.615 0.00 0.00 34.49 3.16
8386 10019 8.117813 TGAATCTGTAGTAACAAAATTTCCCC 57.882 34.615 0.00 0.00 34.49 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.