Multiple sequence alignment - TraesCS7B01G388200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G388200 chr7B 100.000 3136 0 0 434 3569 654253449 654250314 0.000000e+00 5792.0
1 TraesCS7B01G388200 chr7B 90.057 1760 145 15 976 2728 502908442 502910178 0.000000e+00 2254.0
2 TraesCS7B01G388200 chr7B 89.802 1667 152 12 976 2635 503106661 503108316 0.000000e+00 2121.0
3 TraesCS7B01G388200 chr7B 89.306 346 30 3 2884 3226 654215293 654214952 9.160000e-116 427.0
4 TraesCS7B01G388200 chr7B 100.000 228 0 0 1 228 654253882 654253655 4.260000e-114 422.0
5 TraesCS7B01G388200 chr7B 85.135 148 17 3 503 648 115472800 115472944 2.870000e-31 147.0
6 TraesCS7B01G388200 chr7D 94.500 2000 85 8 625 2606 585537705 585539697 0.000000e+00 3061.0
7 TraesCS7B01G388200 chr7D 90.182 1762 140 15 976 2725 477865496 477867236 0.000000e+00 2265.0
8 TraesCS7B01G388200 chr7D 89.796 1666 152 12 977 2635 477968747 477970401 0.000000e+00 2119.0
9 TraesCS7B01G388200 chr7D 87.838 148 12 5 503 648 11245539 11245682 6.130000e-38 169.0
10 TraesCS7B01G388200 chr7A 91.562 2240 116 31 683 2882 675573809 675576015 0.000000e+00 3022.0
11 TraesCS7B01G388200 chr7A 89.483 1759 146 17 982 2728 518505676 518503945 0.000000e+00 2187.0
12 TraesCS7B01G388200 chr7A 89.369 1665 158 10 976 2633 517895607 517893955 0.000000e+00 2076.0
13 TraesCS7B01G388200 chr7A 83.254 209 18 10 454 648 734194497 734194292 3.660000e-40 176.0
14 TraesCS7B01G388200 chr3A 76.123 1336 287 30 1231 2550 33137290 33138609 0.000000e+00 671.0
15 TraesCS7B01G388200 chr3A 86.395 147 15 4 503 648 49314556 49314414 4.770000e-34 156.0
16 TraesCS7B01G388200 chr5B 84.250 673 85 14 2911 3565 705946089 705945420 1.400000e-178 636.0
17 TraesCS7B01G388200 chr5B 82.311 701 101 17 2883 3565 573413651 573414346 1.430000e-163 586.0
18 TraesCS7B01G388200 chrUn 83.929 672 88 16 2911 3565 347789791 347789123 3.030000e-175 625.0
19 TraesCS7B01G388200 chrUn 86.486 148 15 3 503 648 224516180 224516036 1.330000e-34 158.0
20 TraesCS7B01G388200 chrUn 86.486 148 15 3 503 648 397217941 397217797 1.330000e-34 158.0
21 TraesCS7B01G388200 chr4B 83.929 672 88 16 2911 3565 63790278 63789610 3.030000e-175 625.0
22 TraesCS7B01G388200 chr4B 83.780 672 89 16 2911 3565 63785529 63784861 1.410000e-173 619.0
23 TraesCS7B01G388200 chr5D 75.309 1377 276 52 1215 2553 371862276 371863626 5.100000e-168 601.0
24 TraesCS7B01G388200 chr2A 83.082 662 101 8 2912 3565 50379077 50379735 3.070000e-165 592.0
25 TraesCS7B01G388200 chr2A 84.043 188 15 7 447 619 769506144 769505957 2.200000e-37 167.0
26 TraesCS7B01G388200 chr2A 81.731 208 22 5 454 648 557312891 557313095 3.690000e-35 159.0
27 TraesCS7B01G388200 chr2A 100.000 28 0 0 455 482 384235284 384235257 6.000000e-03 52.8
28 TraesCS7B01G388200 chr1B 82.764 673 97 16 2909 3565 200372637 200371968 1.850000e-162 582.0
29 TraesCS7B01G388200 chr2B 75.074 1360 280 52 1231 2553 111359791 111361128 2.390000e-161 579.0
30 TraesCS7B01G388200 chr2B 82.547 636 96 10 2943 3565 43371559 43370926 2.420000e-151 545.0
31 TraesCS7B01G388200 chr2B 84.848 330 31 14 2911 3224 43366756 43366430 7.440000e-82 315.0
32 TraesCS7B01G388200 chr2B 83.028 218 18 13 447 648 396178910 396179124 2.830000e-41 180.0
33 TraesCS7B01G388200 chr6B 87.333 150 14 3 503 650 172024907 172025053 2.200000e-37 167.0
34 TraesCS7B01G388200 chr6B 82.524 206 19 10 456 648 643271246 643271045 7.930000e-37 165.0
35 TraesCS7B01G388200 chr3D 86.486 148 15 3 503 648 587195855 587195711 1.330000e-34 158.0
36 TraesCS7B01G388200 chr5A 100.000 28 0 0 455 482 69184107 69184080 6.000000e-03 52.8
37 TraesCS7B01G388200 chr5A 96.875 32 0 1 455 485 688912464 688912495 6.000000e-03 52.8
38 TraesCS7B01G388200 chr4A 100.000 28 0 0 455 482 576577178 576577151 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G388200 chr7B 654250314 654253882 3568 True 3107 5792 100.000 1 3569 2 chr7B.!!$R2 3568
1 TraesCS7B01G388200 chr7B 502908442 502910178 1736 False 2254 2254 90.057 976 2728 1 chr7B.!!$F2 1752
2 TraesCS7B01G388200 chr7B 503106661 503108316 1655 False 2121 2121 89.802 976 2635 1 chr7B.!!$F3 1659
3 TraesCS7B01G388200 chr7D 585537705 585539697 1992 False 3061 3061 94.500 625 2606 1 chr7D.!!$F4 1981
4 TraesCS7B01G388200 chr7D 477865496 477867236 1740 False 2265 2265 90.182 976 2725 1 chr7D.!!$F2 1749
5 TraesCS7B01G388200 chr7D 477968747 477970401 1654 False 2119 2119 89.796 977 2635 1 chr7D.!!$F3 1658
6 TraesCS7B01G388200 chr7A 675573809 675576015 2206 False 3022 3022 91.562 683 2882 1 chr7A.!!$F1 2199
7 TraesCS7B01G388200 chr7A 518503945 518505676 1731 True 2187 2187 89.483 982 2728 1 chr7A.!!$R2 1746
8 TraesCS7B01G388200 chr7A 517893955 517895607 1652 True 2076 2076 89.369 976 2633 1 chr7A.!!$R1 1657
9 TraesCS7B01G388200 chr3A 33137290 33138609 1319 False 671 671 76.123 1231 2550 1 chr3A.!!$F1 1319
10 TraesCS7B01G388200 chr5B 705945420 705946089 669 True 636 636 84.250 2911 3565 1 chr5B.!!$R1 654
11 TraesCS7B01G388200 chr5B 573413651 573414346 695 False 586 586 82.311 2883 3565 1 chr5B.!!$F1 682
12 TraesCS7B01G388200 chrUn 347789123 347789791 668 True 625 625 83.929 2911 3565 1 chrUn.!!$R2 654
13 TraesCS7B01G388200 chr4B 63789610 63790278 668 True 625 625 83.929 2911 3565 1 chr4B.!!$R2 654
14 TraesCS7B01G388200 chr4B 63784861 63785529 668 True 619 619 83.780 2911 3565 1 chr4B.!!$R1 654
15 TraesCS7B01G388200 chr5D 371862276 371863626 1350 False 601 601 75.309 1215 2553 1 chr5D.!!$F1 1338
16 TraesCS7B01G388200 chr2A 50379077 50379735 658 False 592 592 83.082 2912 3565 1 chr2A.!!$F1 653
17 TraesCS7B01G388200 chr1B 200371968 200372637 669 True 582 582 82.764 2909 3565 1 chr1B.!!$R1 656
18 TraesCS7B01G388200 chr2B 111359791 111361128 1337 False 579 579 75.074 1231 2553 1 chr2B.!!$F1 1322
19 TraesCS7B01G388200 chr2B 43370926 43371559 633 True 545 545 82.547 2943 3565 1 chr2B.!!$R2 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.035317 TTTGCTGACCGCTCACTGAT 59.965 50.0 0.00 0.0 40.11 2.90 F
142 143 0.179037 ACACTGCACTGCACTCACAT 60.179 50.0 0.00 0.0 33.79 3.21 F
667 668 0.321298 TAACTCCCGCACTTTCCAGC 60.321 55.0 0.00 0.0 0.00 4.85 F
798 807 1.493950 CTGCTGCAATCCCGTCGATC 61.494 60.0 3.02 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1206 0.968901 ACCACCGCGAGTTCCTGATA 60.969 55.000 8.23 0.00 0.00 2.15 R
2127 2154 0.176680 AGACGAAGATCTGCGCCAAT 59.823 50.000 23.40 2.97 0.00 3.16 R
2129 2156 1.153765 CAGACGAAGATCTGCGCCA 60.154 57.895 23.40 0.00 39.77 5.69 R
2774 2857 0.590195 ACGCAGAGCAAGAAAAGCAG 59.410 50.000 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.597568 TTTGAGGCATGTTTGAGGCG 59.402 50.000 0.00 0.00 35.18 5.52
20 21 0.537143 TTGAGGCATGTTTGAGGCGT 60.537 50.000 0.00 0.00 35.18 5.68
21 22 0.955428 TGAGGCATGTTTGAGGCGTC 60.955 55.000 0.00 0.00 44.53 5.19
22 23 1.648467 GAGGCATGTTTGAGGCGTCC 61.648 60.000 3.56 0.00 39.72 4.79
23 24 2.480555 GCATGTTTGAGGCGTCCG 59.519 61.111 3.56 0.00 0.00 4.79
24 25 2.480555 CATGTTTGAGGCGTCCGC 59.519 61.111 2.45 2.45 41.06 5.54
36 37 3.073101 GTCCGCCTAGGTCGGGTT 61.073 66.667 31.29 0.00 46.43 4.11
37 38 2.284112 TCCGCCTAGGTCGGGTTT 60.284 61.111 31.29 0.00 46.43 3.27
38 39 1.914764 TCCGCCTAGGTCGGGTTTT 60.915 57.895 31.29 0.00 46.43 2.43
39 40 1.743995 CCGCCTAGGTCGGGTTTTG 60.744 63.158 27.32 8.95 42.99 2.44
40 41 2.396157 CGCCTAGGTCGGGTTTTGC 61.396 63.158 11.31 0.00 0.00 3.68
41 42 1.002502 GCCTAGGTCGGGTTTTGCT 60.003 57.895 11.31 0.00 0.00 3.91
42 43 1.305930 GCCTAGGTCGGGTTTTGCTG 61.306 60.000 11.31 0.00 0.00 4.41
43 44 0.323629 CCTAGGTCGGGTTTTGCTGA 59.676 55.000 0.00 0.00 0.00 4.26
44 45 1.439679 CTAGGTCGGGTTTTGCTGAC 58.560 55.000 0.00 0.00 0.00 3.51
45 46 3.351450 GGTCGGGTTTTGCTGACC 58.649 61.111 0.00 0.00 43.60 4.02
47 48 2.975799 TCGGGTTTTGCTGACCGC 60.976 61.111 0.00 0.00 45.58 5.68
48 49 2.978010 CGGGTTTTGCTGACCGCT 60.978 61.111 0.00 0.00 39.85 5.52
49 50 2.954611 GGGTTTTGCTGACCGCTC 59.045 61.111 0.00 0.00 38.08 5.03
50 51 1.896660 GGGTTTTGCTGACCGCTCA 60.897 57.895 0.00 0.00 38.08 4.26
51 52 1.282875 GGTTTTGCTGACCGCTCAC 59.717 57.895 0.00 0.00 40.11 3.51
52 53 1.166531 GGTTTTGCTGACCGCTCACT 61.167 55.000 0.00 0.00 40.11 3.41
53 54 0.040958 GTTTTGCTGACCGCTCACTG 60.041 55.000 0.00 0.00 40.11 3.66
54 55 0.179059 TTTTGCTGACCGCTCACTGA 60.179 50.000 0.00 0.00 40.11 3.41
55 56 0.035317 TTTGCTGACCGCTCACTGAT 59.965 50.000 0.00 0.00 40.11 2.90
56 57 0.035317 TTGCTGACCGCTCACTGATT 59.965 50.000 0.00 0.00 40.11 2.57
57 58 0.671472 TGCTGACCGCTCACTGATTG 60.671 55.000 0.00 0.00 40.11 2.67
58 59 1.975363 GCTGACCGCTCACTGATTGC 61.975 60.000 0.00 0.00 35.14 3.56
62 63 3.869272 CGCTCACTGATTGCGGGC 61.869 66.667 5.05 0.00 45.07 6.13
63 64 2.437359 GCTCACTGATTGCGGGCT 60.437 61.111 0.00 0.00 0.00 5.19
64 65 2.042831 GCTCACTGATTGCGGGCTT 61.043 57.895 0.00 0.00 0.00 4.35
65 66 0.744414 GCTCACTGATTGCGGGCTTA 60.744 55.000 0.00 0.00 0.00 3.09
66 67 1.009829 CTCACTGATTGCGGGCTTAC 58.990 55.000 0.00 0.00 0.00 2.34
67 68 0.739462 TCACTGATTGCGGGCTTACG 60.739 55.000 0.00 0.00 0.00 3.18
68 69 0.739462 CACTGATTGCGGGCTTACGA 60.739 55.000 0.00 0.00 35.47 3.43
69 70 0.460284 ACTGATTGCGGGCTTACGAG 60.460 55.000 0.00 0.00 35.47 4.18
70 71 1.153449 TGATTGCGGGCTTACGAGG 60.153 57.895 0.00 0.00 35.47 4.63
71 72 1.887707 GATTGCGGGCTTACGAGGG 60.888 63.158 0.00 0.00 35.47 4.30
72 73 3.400599 ATTGCGGGCTTACGAGGGG 62.401 63.158 0.00 0.00 35.47 4.79
74 75 4.222847 GCGGGCTTACGAGGGGAG 62.223 72.222 0.00 0.00 35.47 4.30
75 76 3.537874 CGGGCTTACGAGGGGAGG 61.538 72.222 0.00 0.00 35.47 4.30
76 77 3.162154 GGGCTTACGAGGGGAGGG 61.162 72.222 0.00 0.00 0.00 4.30
77 78 3.162154 GGCTTACGAGGGGAGGGG 61.162 72.222 0.00 0.00 0.00 4.79
78 79 2.365237 GCTTACGAGGGGAGGGGT 60.365 66.667 0.00 0.00 0.00 4.95
79 80 2.732619 GCTTACGAGGGGAGGGGTG 61.733 68.421 0.00 0.00 0.00 4.61
80 81 2.039951 TTACGAGGGGAGGGGTGG 59.960 66.667 0.00 0.00 0.00 4.61
81 82 2.525284 CTTACGAGGGGAGGGGTGGA 62.525 65.000 0.00 0.00 0.00 4.02
82 83 2.525284 TTACGAGGGGAGGGGTGGAG 62.525 65.000 0.00 0.00 0.00 3.86
84 85 4.026357 GAGGGGAGGGGTGGAGGT 62.026 72.222 0.00 0.00 0.00 3.85
85 86 3.552911 AGGGGAGGGGTGGAGGTT 61.553 66.667 0.00 0.00 0.00 3.50
86 87 3.015753 GGGGAGGGGTGGAGGTTC 61.016 72.222 0.00 0.00 0.00 3.62
87 88 3.400054 GGGAGGGGTGGAGGTTCG 61.400 72.222 0.00 0.00 0.00 3.95
88 89 2.284405 GGAGGGGTGGAGGTTCGA 60.284 66.667 0.00 0.00 0.00 3.71
89 90 2.359967 GGAGGGGTGGAGGTTCGAG 61.360 68.421 0.00 0.00 0.00 4.04
90 91 2.284699 AGGGGTGGAGGTTCGAGG 60.285 66.667 0.00 0.00 0.00 4.63
91 92 4.097361 GGGGTGGAGGTTCGAGGC 62.097 72.222 0.00 0.00 0.00 4.70
92 93 3.319198 GGGTGGAGGTTCGAGGCA 61.319 66.667 0.00 0.00 0.00 4.75
93 94 2.047179 GGTGGAGGTTCGAGGCAC 60.047 66.667 0.00 0.00 0.00 5.01
94 95 2.047179 GTGGAGGTTCGAGGCACC 60.047 66.667 0.00 0.00 34.06 5.01
106 107 1.576356 GAGGCACCTCGCTTTAGATG 58.424 55.000 0.00 0.00 41.91 2.90
107 108 1.137086 GAGGCACCTCGCTTTAGATGA 59.863 52.381 0.00 0.00 41.91 2.92
108 109 1.765314 AGGCACCTCGCTTTAGATGAT 59.235 47.619 0.00 0.00 41.91 2.45
109 110 2.965831 AGGCACCTCGCTTTAGATGATA 59.034 45.455 0.00 0.00 41.91 2.15
110 111 3.580458 AGGCACCTCGCTTTAGATGATAT 59.420 43.478 0.00 0.00 41.91 1.63
111 112 4.772624 AGGCACCTCGCTTTAGATGATATA 59.227 41.667 0.00 0.00 41.91 0.86
112 113 5.423610 AGGCACCTCGCTTTAGATGATATAT 59.576 40.000 0.00 0.00 41.91 0.86
113 114 6.607600 AGGCACCTCGCTTTAGATGATATATA 59.392 38.462 0.00 0.00 41.91 0.86
114 115 7.124298 AGGCACCTCGCTTTAGATGATATATAA 59.876 37.037 0.00 0.00 41.91 0.98
115 116 7.222999 GGCACCTCGCTTTAGATGATATATAAC 59.777 40.741 0.00 0.00 41.91 1.89
116 117 7.976734 GCACCTCGCTTTAGATGATATATAACT 59.023 37.037 0.00 0.00 37.77 2.24
117 118 9.862371 CACCTCGCTTTAGATGATATATAACTT 57.138 33.333 0.00 0.00 0.00 2.66
135 136 5.766150 AACTTAAAATACACTGCACTGCA 57.234 34.783 3.11 3.11 36.92 4.41
136 137 5.108385 ACTTAAAATACACTGCACTGCAC 57.892 39.130 0.00 0.00 33.79 4.57
137 138 4.821805 ACTTAAAATACACTGCACTGCACT 59.178 37.500 0.00 0.00 33.79 4.40
138 139 3.904136 AAAATACACTGCACTGCACTC 57.096 42.857 0.00 0.00 33.79 3.51
139 140 2.549064 AATACACTGCACTGCACTCA 57.451 45.000 0.00 0.00 33.79 3.41
140 141 1.800805 ATACACTGCACTGCACTCAC 58.199 50.000 0.00 0.00 33.79 3.51
141 142 0.463620 TACACTGCACTGCACTCACA 59.536 50.000 0.00 0.00 33.79 3.58
142 143 0.179037 ACACTGCACTGCACTCACAT 60.179 50.000 0.00 0.00 33.79 3.21
143 144 1.070601 ACACTGCACTGCACTCACATA 59.929 47.619 0.00 0.00 33.79 2.29
144 145 2.289882 ACACTGCACTGCACTCACATAT 60.290 45.455 0.00 0.00 33.79 1.78
145 146 2.745821 CACTGCACTGCACTCACATATT 59.254 45.455 0.00 0.00 33.79 1.28
146 147 3.005554 ACTGCACTGCACTCACATATTC 58.994 45.455 0.00 0.00 33.79 1.75
147 148 3.268330 CTGCACTGCACTCACATATTCT 58.732 45.455 0.00 0.00 33.79 2.40
148 149 4.081476 ACTGCACTGCACTCACATATTCTA 60.081 41.667 0.00 0.00 33.79 2.10
149 150 4.831107 TGCACTGCACTCACATATTCTAA 58.169 39.130 0.00 0.00 31.71 2.10
150 151 5.244755 TGCACTGCACTCACATATTCTAAA 58.755 37.500 0.00 0.00 31.71 1.85
151 152 5.882000 TGCACTGCACTCACATATTCTAAAT 59.118 36.000 0.00 0.00 31.71 1.40
152 153 6.037500 TGCACTGCACTCACATATTCTAAATC 59.962 38.462 0.00 0.00 31.71 2.17
153 154 6.037500 GCACTGCACTCACATATTCTAAATCA 59.962 38.462 0.00 0.00 0.00 2.57
154 155 7.414429 GCACTGCACTCACATATTCTAAATCAA 60.414 37.037 0.00 0.00 0.00 2.57
155 156 8.618677 CACTGCACTCACATATTCTAAATCAAT 58.381 33.333 0.00 0.00 0.00 2.57
156 157 9.182214 ACTGCACTCACATATTCTAAATCAATT 57.818 29.630 0.00 0.00 0.00 2.32
188 189 8.568732 AAACCAACCAAATATATTAATTCGCG 57.431 30.769 0.00 0.00 0.00 5.87
189 190 7.266922 ACCAACCAAATATATTAATTCGCGT 57.733 32.000 5.77 0.00 0.00 6.01
190 191 8.380743 ACCAACCAAATATATTAATTCGCGTA 57.619 30.769 5.77 0.00 0.00 4.42
191 192 8.284693 ACCAACCAAATATATTAATTCGCGTAC 58.715 33.333 5.77 0.00 0.00 3.67
192 193 8.500773 CCAACCAAATATATTAATTCGCGTACT 58.499 33.333 5.77 0.00 0.00 2.73
193 194 9.313323 CAACCAAATATATTAATTCGCGTACTG 57.687 33.333 5.77 0.00 0.00 2.74
194 195 7.515643 ACCAAATATATTAATTCGCGTACTGC 58.484 34.615 5.77 0.00 41.47 4.40
195 196 7.171848 ACCAAATATATTAATTCGCGTACTGCA 59.828 33.333 5.77 0.00 46.97 4.41
196 197 8.175069 CCAAATATATTAATTCGCGTACTGCAT 58.825 33.333 5.77 0.00 46.97 3.96
197 198 9.541724 CAAATATATTAATTCGCGTACTGCATT 57.458 29.630 5.77 0.00 46.97 3.56
202 203 2.798834 TTCGCGTACTGCATTTAAGC 57.201 45.000 5.77 0.00 46.97 3.09
203 204 1.715993 TCGCGTACTGCATTTAAGCA 58.284 45.000 5.77 0.00 46.97 3.91
204 205 2.070028 TCGCGTACTGCATTTAAGCAA 58.930 42.857 5.77 0.00 45.13 3.91
205 206 2.093625 TCGCGTACTGCATTTAAGCAAG 59.906 45.455 5.77 0.50 45.13 4.01
206 207 2.093625 CGCGTACTGCATTTAAGCAAGA 59.906 45.455 0.00 0.00 45.13 3.02
207 208 3.674423 GCGTACTGCATTTAAGCAAGAG 58.326 45.455 8.06 0.00 45.13 2.85
208 209 3.370978 GCGTACTGCATTTAAGCAAGAGA 59.629 43.478 8.06 0.00 45.13 3.10
209 210 4.142902 GCGTACTGCATTTAAGCAAGAGAA 60.143 41.667 8.06 0.00 45.13 2.87
210 211 5.616866 GCGTACTGCATTTAAGCAAGAGAAA 60.617 40.000 8.06 0.00 45.13 2.52
211 212 6.370593 CGTACTGCATTTAAGCAAGAGAAAA 58.629 36.000 0.00 0.00 45.13 2.29
212 213 7.023575 CGTACTGCATTTAAGCAAGAGAAAAT 58.976 34.615 0.00 0.00 45.13 1.82
213 214 7.007725 CGTACTGCATTTAAGCAAGAGAAAATG 59.992 37.037 0.00 0.00 45.13 2.32
219 220 8.746922 CATTTAAGCAAGAGAAAATGCAGTAA 57.253 30.769 0.00 0.00 44.95 2.24
220 221 8.642020 CATTTAAGCAAGAGAAAATGCAGTAAC 58.358 33.333 0.00 0.00 44.95 2.50
221 222 7.510549 TTAAGCAAGAGAAAATGCAGTAACT 57.489 32.000 0.00 0.00 44.95 2.24
222 223 6.396829 AAGCAAGAGAAAATGCAGTAACTT 57.603 33.333 0.00 0.00 44.95 2.66
223 224 6.396829 AGCAAGAGAAAATGCAGTAACTTT 57.603 33.333 0.00 0.00 44.95 2.66
224 225 6.809869 AGCAAGAGAAAATGCAGTAACTTTT 58.190 32.000 0.00 0.00 44.95 2.27
225 226 7.267857 AGCAAGAGAAAATGCAGTAACTTTTT 58.732 30.769 0.00 0.00 44.95 1.94
226 227 7.436376 AGCAAGAGAAAATGCAGTAACTTTTTC 59.564 33.333 11.31 11.31 44.95 2.29
227 228 7.222611 GCAAGAGAAAATGCAGTAACTTTTTCA 59.777 33.333 18.28 0.00 42.07 2.69
464 465 9.495572 AAAATTTGGTCAAAGTGTAAAGTTTGA 57.504 25.926 11.25 11.25 39.73 2.69
465 466 9.665719 AAATTTGGTCAAAGTGTAAAGTTTGAT 57.334 25.926 17.09 0.70 42.91 2.57
466 467 8.871686 ATTTGGTCAAAGTGTAAAGTTTGATC 57.128 30.769 17.09 16.87 42.91 2.92
467 468 7.397892 TTGGTCAAAGTGTAAAGTTTGATCA 57.602 32.000 20.74 20.74 46.91 2.92
468 469 7.397892 TGGTCAAAGTGTAAAGTTTGATCAA 57.602 32.000 21.88 3.38 46.07 2.57
469 470 8.006298 TGGTCAAAGTGTAAAGTTTGATCAAT 57.994 30.769 21.88 0.00 46.07 2.57
470 471 8.474025 TGGTCAAAGTGTAAAGTTTGATCAATT 58.526 29.630 21.88 3.46 46.07 2.32
471 472 9.313118 GGTCAAAGTGTAAAGTTTGATCAATTT 57.687 29.630 18.08 10.31 42.91 1.82
524 525 7.989826 ACTTATGAAAGTTAAGTCCATGATGC 58.010 34.615 0.00 0.00 43.60 3.91
525 526 7.611467 ACTTATGAAAGTTAAGTCCATGATGCA 59.389 33.333 0.00 0.00 43.60 3.96
526 527 8.523915 TTATGAAAGTTAAGTCCATGATGCAT 57.476 30.769 0.00 0.00 0.00 3.96
527 528 6.441093 TGAAAGTTAAGTCCATGATGCATC 57.559 37.500 20.14 20.14 0.00 3.91
528 529 6.182627 TGAAAGTTAAGTCCATGATGCATCT 58.817 36.000 26.32 10.21 0.00 2.90
529 530 7.337938 TGAAAGTTAAGTCCATGATGCATCTA 58.662 34.615 26.32 13.82 0.00 1.98
530 531 7.828717 TGAAAGTTAAGTCCATGATGCATCTAA 59.171 33.333 26.32 12.32 0.00 2.10
531 532 7.559590 AAGTTAAGTCCATGATGCATCTAAC 57.440 36.000 26.32 21.53 0.00 2.34
532 533 6.653020 AGTTAAGTCCATGATGCATCTAACA 58.347 36.000 26.32 8.26 0.00 2.41
533 534 7.112122 AGTTAAGTCCATGATGCATCTAACAA 58.888 34.615 26.32 7.19 0.00 2.83
534 535 7.776969 AGTTAAGTCCATGATGCATCTAACAAT 59.223 33.333 26.32 9.30 0.00 2.71
535 536 9.056005 GTTAAGTCCATGATGCATCTAACAATA 57.944 33.333 26.32 5.68 0.00 1.90
536 537 9.797642 TTAAGTCCATGATGCATCTAACAATAT 57.202 29.630 26.32 7.86 0.00 1.28
537 538 8.701908 AAGTCCATGATGCATCTAACAATATT 57.298 30.769 26.32 9.80 0.00 1.28
538 539 8.107399 AGTCCATGATGCATCTAACAATATTG 57.893 34.615 26.32 14.01 0.00 1.90
539 540 7.940688 AGTCCATGATGCATCTAACAATATTGA 59.059 33.333 26.32 9.01 0.00 2.57
540 541 8.737175 GTCCATGATGCATCTAACAATATTGAT 58.263 33.333 26.32 12.82 0.00 2.57
541 542 9.304335 TCCATGATGCATCTAACAATATTGATT 57.696 29.630 26.32 13.80 0.00 2.57
542 543 9.923143 CCATGATGCATCTAACAATATTGATTT 57.077 29.630 26.32 9.25 0.00 2.17
641 642 7.429636 TGTGGATTAGTAAAAAGAAACGGAG 57.570 36.000 0.00 0.00 0.00 4.63
642 643 6.428771 TGTGGATTAGTAAAAAGAAACGGAGG 59.571 38.462 0.00 0.00 0.00 4.30
643 644 5.941647 TGGATTAGTAAAAAGAAACGGAGGG 59.058 40.000 0.00 0.00 0.00 4.30
648 649 6.370186 AGTAAAAAGAAACGGAGGGAGTAT 57.630 37.500 0.00 0.00 0.00 2.12
667 668 0.321298 TAACTCCCGCACTTTCCAGC 60.321 55.000 0.00 0.00 0.00 4.85
759 768 1.787989 CGATAAACGCTGCTGCAGTTG 60.788 52.381 28.50 22.89 39.64 3.16
796 805 2.125552 CTGCTGCAATCCCGTCGA 60.126 61.111 3.02 0.00 0.00 4.20
797 806 1.522355 CTGCTGCAATCCCGTCGAT 60.522 57.895 3.02 0.00 0.00 3.59
798 807 1.493950 CTGCTGCAATCCCGTCGATC 61.494 60.000 3.02 0.00 0.00 3.69
799 808 1.521457 GCTGCAATCCCGTCGATCA 60.521 57.895 0.00 0.00 0.00 2.92
844 853 2.695646 GGTGCTCGATTTCGCGAC 59.304 61.111 9.15 0.00 39.60 5.19
888 897 2.058675 CCTGGTGAAACGGAGACCT 58.941 57.895 0.00 0.00 38.12 3.85
973 988 4.165180 TGCCTATATAAGTCCAGTGCCAAA 59.835 41.667 0.00 0.00 0.00 3.28
974 989 5.163099 TGCCTATATAAGTCCAGTGCCAAAT 60.163 40.000 0.00 0.00 0.00 2.32
979 994 1.609208 AGTCCAGTGCCAAATGACAC 58.391 50.000 0.00 0.00 37.05 3.67
1061 1076 2.738521 CGTCTTGTCCTGCCACGG 60.739 66.667 0.00 0.00 0.00 4.94
1686 1704 2.358737 GACCACTTCTGGGCCGTG 60.359 66.667 0.00 0.00 40.28 4.94
2127 2154 2.681064 CCCGTCCCCAAGACCGTA 60.681 66.667 0.00 0.00 43.08 4.02
2129 2156 1.619807 CCCGTCCCCAAGACCGTATT 61.620 60.000 0.00 0.00 43.08 1.89
2265 2298 1.610624 GGCGTCCTCTTCAACATCCAA 60.611 52.381 0.00 0.00 0.00 3.53
2286 2319 4.978083 ATACGTCAACTACTGGTTCGAT 57.022 40.909 0.00 0.00 35.74 3.59
2367 2403 1.371183 CGTGAGCAAGAACCCCAGA 59.629 57.895 0.00 0.00 0.00 3.86
2577 2619 6.780706 CTGCTAGAGAAGTAGCTAGTACTC 57.219 45.833 0.00 7.13 44.98 2.59
2578 2620 6.488769 TGCTAGAGAAGTAGCTAGTACTCT 57.511 41.667 19.95 19.95 44.98 3.24
2584 2639 6.434652 AGAGAAGTAGCTAGTACTCTTTGCAA 59.565 38.462 14.05 0.00 41.50 4.08
2635 2710 6.824958 TGCCCAACTAGTAGAATAAGGATT 57.175 37.500 3.59 0.00 0.00 3.01
2642 2717 6.926313 ACTAGTAGAATAAGGATTGATCGCC 58.074 40.000 3.59 0.00 0.00 5.54
2647 2722 6.126863 AGAATAAGGATTGATCGCCCATAA 57.873 37.500 1.51 0.00 0.00 1.90
2648 2723 5.940470 AGAATAAGGATTGATCGCCCATAAC 59.060 40.000 1.51 0.00 0.00 1.89
2673 2748 5.966742 AATTCTTAGTTGGAAGAGTTGCC 57.033 39.130 0.00 0.00 34.97 4.52
2675 2750 5.818678 TTCTTAGTTGGAAGAGTTGCCTA 57.181 39.130 0.00 0.00 36.80 3.93
2676 2751 5.818678 TCTTAGTTGGAAGAGTTGCCTAA 57.181 39.130 0.00 0.00 31.72 2.69
2677 2752 6.182507 TCTTAGTTGGAAGAGTTGCCTAAA 57.817 37.500 0.00 0.00 31.72 1.85
2707 2790 5.694458 GTGTTGGTTCTAATGGCGAAAATTT 59.306 36.000 0.00 0.00 0.00 1.82
2719 2802 4.981674 TGGCGAAAATTTAGCAAAGAACAG 59.018 37.500 12.51 0.00 0.00 3.16
2729 2812 2.173569 AGCAAAGAACAGAGGTGGAACT 59.826 45.455 0.00 0.00 36.74 3.01
2730 2813 2.952310 GCAAAGAACAGAGGTGGAACTT 59.048 45.455 0.00 0.00 36.74 2.66
2731 2814 3.243201 GCAAAGAACAGAGGTGGAACTTG 60.243 47.826 0.00 0.00 36.74 3.16
2732 2815 2.938956 AGAACAGAGGTGGAACTTGG 57.061 50.000 0.00 0.00 36.74 3.61
2733 2816 2.408565 AGAACAGAGGTGGAACTTGGA 58.591 47.619 0.00 0.00 36.74 3.53
2734 2817 2.777692 AGAACAGAGGTGGAACTTGGAA 59.222 45.455 0.00 0.00 36.74 3.53
2735 2818 2.938956 ACAGAGGTGGAACTTGGAAG 57.061 50.000 0.00 0.00 36.74 3.46
2736 2819 2.408565 ACAGAGGTGGAACTTGGAAGA 58.591 47.619 0.00 0.00 36.74 2.87
2737 2820 2.982488 ACAGAGGTGGAACTTGGAAGAT 59.018 45.455 0.00 0.00 36.74 2.40
2756 2839 2.340210 TAGTGGTTGCACTGCTCAAA 57.660 45.000 1.98 0.00 36.68 2.69
2759 2842 1.134946 GTGGTTGCACTGCTCAAACTT 59.865 47.619 1.98 0.00 32.62 2.66
2760 2843 1.134753 TGGTTGCACTGCTCAAACTTG 59.865 47.619 1.98 0.00 32.62 3.16
2761 2844 1.203065 GTTGCACTGCTCAAACTTGC 58.797 50.000 1.98 0.00 0.00 4.01
2762 2845 0.248580 TTGCACTGCTCAAACTTGCG 60.249 50.000 1.98 0.00 35.90 4.85
2763 2846 2.012948 GCACTGCTCAAACTTGCGC 61.013 57.895 0.00 0.00 39.24 6.09
2764 2847 1.356270 CACTGCTCAAACTTGCGCA 59.644 52.632 5.66 5.66 45.52 6.09
2765 2848 0.248580 CACTGCTCAAACTTGCGCAA 60.249 50.000 23.48 23.48 46.71 4.85
2766 2849 0.248621 ACTGCTCAAACTTGCGCAAC 60.249 50.000 21.02 8.30 46.71 4.17
2767 2850 0.248580 CTGCTCAAACTTGCGCAACA 60.249 50.000 21.02 12.83 46.71 3.33
2768 2851 0.248580 TGCTCAAACTTGCGCAACAG 60.249 50.000 21.02 13.70 44.84 3.16
2769 2852 1.543106 GCTCAAACTTGCGCAACAGC 61.543 55.000 21.02 16.58 38.67 4.40
2770 2853 0.029834 CTCAAACTTGCGCAACAGCT 59.970 50.000 21.02 0.00 38.13 4.24
2771 2854 0.455410 TCAAACTTGCGCAACAGCTT 59.545 45.000 21.02 5.21 38.13 3.74
2772 2855 1.135141 TCAAACTTGCGCAACAGCTTT 60.135 42.857 21.02 11.13 38.13 3.51
2773 2856 1.660104 CAAACTTGCGCAACAGCTTTT 59.340 42.857 21.02 10.44 38.13 2.27
2774 2857 1.559831 AACTTGCGCAACAGCTTTTC 58.440 45.000 21.02 0.00 38.13 2.29
2775 2858 0.740737 ACTTGCGCAACAGCTTTTCT 59.259 45.000 21.02 0.00 38.13 2.52
2777 2860 0.871163 TTGCGCAACAGCTTTTCTGC 60.871 50.000 21.02 0.00 46.76 4.26
2791 2874 3.360249 TTTCTGCTTTTCTTGCTCTGC 57.640 42.857 0.00 0.00 0.00 4.26
2800 2883 3.722555 TTCTTGCTCTGCGTTTATTCG 57.277 42.857 0.00 0.00 0.00 3.34
2816 2899 6.074195 CGTTTATTCGGACTACACAAGAAACA 60.074 38.462 0.00 0.00 0.00 2.83
2820 2904 3.133362 TCGGACTACACAAGAAACAGGTT 59.867 43.478 0.00 0.00 0.00 3.50
2821 2905 3.247648 CGGACTACACAAGAAACAGGTTG 59.752 47.826 0.00 0.00 0.00 3.77
2824 2908 3.877508 ACTACACAAGAAACAGGTTGAGC 59.122 43.478 0.00 0.00 0.00 4.26
2844 2928 4.063967 CCTGACACCGCGCCACTA 62.064 66.667 0.00 0.00 0.00 2.74
2845 2929 2.809601 CTGACACCGCGCCACTAC 60.810 66.667 0.00 0.00 0.00 2.73
2846 2930 4.710695 TGACACCGCGCCACTACG 62.711 66.667 0.00 0.00 0.00 3.51
2847 2931 4.409218 GACACCGCGCCACTACGA 62.409 66.667 0.00 0.00 34.06 3.43
2848 2932 3.695022 GACACCGCGCCACTACGAT 62.695 63.158 0.00 0.00 34.06 3.73
2849 2933 2.954868 CACCGCGCCACTACGATC 60.955 66.667 0.00 0.00 34.06 3.69
2850 2934 4.203076 ACCGCGCCACTACGATCC 62.203 66.667 0.00 0.00 34.06 3.36
2851 2935 4.201679 CCGCGCCACTACGATCCA 62.202 66.667 0.00 0.00 34.06 3.41
2852 2936 2.027605 CGCGCCACTACGATCCAT 59.972 61.111 0.00 0.00 34.06 3.41
2853 2937 2.016704 CGCGCCACTACGATCCATC 61.017 63.158 0.00 0.00 34.06 3.51
2854 2938 1.364171 GCGCCACTACGATCCATCT 59.636 57.895 0.00 0.00 34.06 2.90
2855 2939 0.596577 GCGCCACTACGATCCATCTA 59.403 55.000 0.00 0.00 34.06 1.98
2856 2940 1.401670 GCGCCACTACGATCCATCTAG 60.402 57.143 0.00 0.00 34.06 2.43
2857 2941 1.401670 CGCCACTACGATCCATCTAGC 60.402 57.143 0.00 0.00 34.06 3.42
2858 2942 1.889829 GCCACTACGATCCATCTAGCT 59.110 52.381 0.00 0.00 0.00 3.32
2859 2943 2.352225 GCCACTACGATCCATCTAGCTG 60.352 54.545 0.00 0.00 0.00 4.24
2860 2944 2.230025 CCACTACGATCCATCTAGCTGG 59.770 54.545 6.25 6.25 37.66 4.85
2861 2945 2.887783 CACTACGATCCATCTAGCTGGT 59.112 50.000 12.27 0.40 37.57 4.00
2862 2946 2.887783 ACTACGATCCATCTAGCTGGTG 59.112 50.000 12.27 6.61 37.57 4.17
2863 2947 0.390860 ACGATCCATCTAGCTGGTGC 59.609 55.000 12.27 5.21 37.57 5.01
2864 2948 0.320247 CGATCCATCTAGCTGGTGCC 60.320 60.000 12.27 2.81 40.80 5.01
2865 2949 0.761187 GATCCATCTAGCTGGTGCCA 59.239 55.000 12.27 0.00 40.80 4.92
2866 2950 0.471617 ATCCATCTAGCTGGTGCCAC 59.528 55.000 12.27 0.00 40.80 5.01
2867 2951 1.153086 CCATCTAGCTGGTGCCACC 60.153 63.158 7.01 7.01 40.80 4.61
2868 2952 1.153086 CATCTAGCTGGTGCCACCC 60.153 63.158 12.25 0.00 37.50 4.61
2869 2953 2.378634 ATCTAGCTGGTGCCACCCC 61.379 63.158 12.25 2.18 37.50 4.95
2870 2954 3.329889 CTAGCTGGTGCCACCCCA 61.330 66.667 12.25 0.00 37.50 4.96
2874 2958 4.039092 CTGGTGCCACCCCAGGAG 62.039 72.222 12.25 0.00 44.77 3.69
2880 2964 3.866582 CCACCCCAGGAGCGGATC 61.867 72.222 0.00 0.00 0.00 3.36
2881 2965 3.083349 CACCCCAGGAGCGGATCA 61.083 66.667 0.00 0.00 0.00 2.92
2890 2974 1.751924 AGGAGCGGATCAGTGTTAGTC 59.248 52.381 0.00 0.00 0.00 2.59
2891 2975 1.534175 GGAGCGGATCAGTGTTAGTCG 60.534 57.143 0.00 0.00 0.00 4.18
2892 2976 1.132643 GAGCGGATCAGTGTTAGTCGT 59.867 52.381 0.00 0.00 0.00 4.34
2893 2977 2.353889 GAGCGGATCAGTGTTAGTCGTA 59.646 50.000 0.00 0.00 0.00 3.43
2902 2986 7.227116 GGATCAGTGTTAGTCGTAGAACTAGAT 59.773 40.741 0.00 0.00 39.69 1.98
2905 2989 8.473219 TCAGTGTTAGTCGTAGAACTAGATAGA 58.527 37.037 0.00 0.00 39.69 1.98
2906 2990 9.263538 CAGTGTTAGTCGTAGAACTAGATAGAT 57.736 37.037 0.00 0.00 39.69 1.98
2915 2999 9.743581 TCGTAGAACTAGATAGATAGAGAGAGA 57.256 37.037 0.00 0.00 0.00 3.10
2936 3020 0.455410 TTTTTGTGCTGCGTGCTTCT 59.545 45.000 0.00 0.00 43.37 2.85
2938 3022 2.666715 TTTGTGCTGCGTGCTTCTGC 62.667 55.000 0.00 0.00 43.37 4.26
2939 3023 4.731503 GTGCTGCGTGCTTCTGCG 62.732 66.667 0.00 0.00 43.34 5.18
2950 3039 0.453449 GCTTCTGCGGCTTTTCTTCG 60.453 55.000 0.00 0.00 0.00 3.79
2966 3055 9.827411 GCTTTTCTTCGTTCTTCTTATTAACAT 57.173 29.630 0.00 0.00 0.00 2.71
2987 3082 7.644986 ACATCAAAACTGAAAACAAACGAAA 57.355 28.000 0.00 0.00 0.00 3.46
2994 3089 2.691011 TGAAAACAAACGAAAGAGGGGG 59.309 45.455 0.00 0.00 0.00 5.40
3078 3173 3.906718 ACGTTTGGTTCGTGCCAA 58.093 50.000 8.85 8.85 45.83 4.52
3097 3192 3.722295 CCACGAAACGCGCATGGT 61.722 61.111 5.73 0.00 46.04 3.55
3121 3216 3.506844 GCCTACACTACCTATCTGCTACC 59.493 52.174 0.00 0.00 0.00 3.18
3122 3217 4.726583 CCTACACTACCTATCTGCTACCA 58.273 47.826 0.00 0.00 0.00 3.25
3123 3218 4.762765 CCTACACTACCTATCTGCTACCAG 59.237 50.000 0.00 0.00 40.54 4.00
3190 3287 4.836125 TTGCTAAGCCTGAAACTGAAAG 57.164 40.909 0.00 0.00 42.29 2.62
3191 3288 4.085357 TGCTAAGCCTGAAACTGAAAGA 57.915 40.909 0.00 0.00 37.43 2.52
3193 3290 4.275936 TGCTAAGCCTGAAACTGAAAGAAC 59.724 41.667 0.00 0.00 37.43 3.01
3194 3291 4.517075 GCTAAGCCTGAAACTGAAAGAACT 59.483 41.667 0.00 0.00 37.43 3.01
3195 3292 4.907879 AAGCCTGAAACTGAAAGAACTG 57.092 40.909 0.00 0.00 37.43 3.16
3198 3295 5.136105 AGCCTGAAACTGAAAGAACTGAAT 58.864 37.500 0.00 0.00 37.43 2.57
3199 3296 5.009410 AGCCTGAAACTGAAAGAACTGAATG 59.991 40.000 0.00 0.00 37.43 2.67
3231 3332 7.004086 AGGATTACAAAGTCAACAATTCTCCA 58.996 34.615 0.00 0.00 0.00 3.86
3248 3349 1.077787 CACTTAATCCTGGCGCCCA 60.078 57.895 26.77 11.42 0.00 5.36
3257 3358 2.836154 TGGCGCCCAGAAGAAACT 59.164 55.556 26.77 0.00 0.00 2.66
3279 3380 1.609061 CCATGACACCGAGCTTCAGTT 60.609 52.381 0.00 0.00 0.00 3.16
3280 3381 1.462283 CATGACACCGAGCTTCAGTTG 59.538 52.381 0.00 0.00 0.00 3.16
3299 3400 2.783135 TGCATCTCCAAGAACTTGACC 58.217 47.619 14.99 0.00 42.93 4.02
3320 3421 2.618053 CGGCCTAGTGACTTGGTTAAG 58.382 52.381 14.29 0.89 39.86 1.85
3322 3423 3.118738 CGGCCTAGTGACTTGGTTAAGAT 60.119 47.826 14.29 0.00 37.36 2.40
3341 3442 0.179009 TATCAGCAAGCTGGCCATCC 60.179 55.000 20.78 0.00 43.75 3.51
3349 3450 2.821366 CTGGCCATCCGTGCTGAC 60.821 66.667 5.51 0.00 34.14 3.51
3353 3454 2.048222 CCATCCGTGCTGACGTGT 60.048 61.111 0.00 0.00 44.54 4.49
3354 3455 1.214325 CCATCCGTGCTGACGTGTA 59.786 57.895 0.00 0.00 44.54 2.90
3355 3456 0.389296 CCATCCGTGCTGACGTGTAA 60.389 55.000 0.00 0.00 44.54 2.41
3371 3472 1.985159 TGTAAGATGTCCACCTTGCCT 59.015 47.619 0.00 0.00 0.00 4.75
3383 3484 0.529378 CCTTGCCTTCCTCAATGCAC 59.471 55.000 0.00 0.00 33.37 4.57
3386 3487 0.694771 TGCCTTCCTCAATGCACTCT 59.305 50.000 0.00 0.00 29.08 3.24
3395 3496 3.686241 CCTCAATGCACTCTCGAATGAAA 59.314 43.478 0.00 0.00 0.00 2.69
3403 3504 4.154918 GCACTCTCGAATGAAATGAAACCT 59.845 41.667 0.00 0.00 0.00 3.50
3404 3505 5.672321 GCACTCTCGAATGAAATGAAACCTC 60.672 44.000 0.00 0.00 0.00 3.85
3413 3514 4.002982 TGAAATGAAACCTCAGGTCGATG 58.997 43.478 0.00 0.00 33.12 3.84
3419 3520 0.036952 ACCTCAGGTCGATGTGCTTG 60.037 55.000 0.00 0.00 0.00 4.01
3431 3532 3.989787 TGCTTGCTCCGCTCGTGA 61.990 61.111 0.00 0.00 0.00 4.35
3440 3541 2.125952 CGCTCGTGATGCACTGGA 60.126 61.111 0.00 0.00 31.34 3.86
3458 3559 1.224965 GATTCTTGGCCAGCTCGATC 58.775 55.000 5.11 3.31 0.00 3.69
3462 3563 3.604129 TTGGCCAGCTCGATCGCAA 62.604 57.895 11.09 4.04 0.00 4.85
3464 3565 2.401195 GCCAGCTCGATCGCAAAC 59.599 61.111 11.09 0.00 0.00 2.93
3479 3580 1.336755 GCAAACCTGTTGTCCACGAAT 59.663 47.619 0.00 0.00 0.00 3.34
3481 3582 3.003897 GCAAACCTGTTGTCCACGAATAA 59.996 43.478 0.00 0.00 0.00 1.40
3482 3583 4.533222 CAAACCTGTTGTCCACGAATAAC 58.467 43.478 0.00 0.00 0.00 1.89
3488 3589 3.810941 TGTTGTCCACGAATAACTTCACC 59.189 43.478 0.00 0.00 0.00 4.02
3494 3595 1.337823 ACGAATAACTTCACCGCTGCT 60.338 47.619 0.00 0.00 0.00 4.24
3508 3609 1.607178 CTGCTGGTGGCCATCCAAA 60.607 57.895 22.32 14.89 45.53 3.28
3511 3612 1.880819 GCTGGTGGCCATCCAAACAG 61.881 60.000 22.32 13.31 45.53 3.16
3512 3613 0.251297 CTGGTGGCCATCCAAACAGA 60.251 55.000 22.32 0.00 45.31 3.41
3515 3616 0.734889 GTGGCCATCCAAACAGATCG 59.265 55.000 9.72 0.00 45.53 3.69
3517 3618 0.749454 GGCCATCCAAACAGATCGCT 60.749 55.000 0.00 0.00 31.79 4.93
3521 3622 2.419159 CCATCCAAACAGATCGCTCAGA 60.419 50.000 0.00 0.00 0.00 3.27
3523 3624 2.964740 TCCAAACAGATCGCTCAGAAG 58.035 47.619 0.00 0.00 0.00 2.85
3528 3629 2.166829 ACAGATCGCTCAGAAGTCTGT 58.833 47.619 8.14 0.82 41.74 3.41
3530 3631 3.178267 CAGATCGCTCAGAAGTCTGTTC 58.822 50.000 8.14 1.37 44.12 3.18
3536 3637 2.808202 GCTCAGAAGTCTGTTCAGCCAA 60.808 50.000 8.14 0.00 44.12 4.52
3539 3640 2.945008 CAGAAGTCTGTTCAGCCAAACA 59.055 45.455 0.00 1.96 39.09 2.83
3548 3649 0.111061 TCAGCCAAACAGCCTGACAT 59.889 50.000 0.00 0.00 0.00 3.06
3558 3659 0.611062 AGCCTGACATGCAGCATTGT 60.611 50.000 4.69 7.66 43.50 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.597568 CGCCTCAAACATGCCTCAAA 59.402 50.000 0.00 0.00 0.00 2.69
1 2 0.537143 ACGCCTCAAACATGCCTCAA 60.537 50.000 0.00 0.00 0.00 3.02
2 3 0.955428 GACGCCTCAAACATGCCTCA 60.955 55.000 0.00 0.00 0.00 3.86
3 4 1.648467 GGACGCCTCAAACATGCCTC 61.648 60.000 0.00 0.00 0.00 4.70
4 5 1.675641 GGACGCCTCAAACATGCCT 60.676 57.895 0.00 0.00 0.00 4.75
5 6 2.877691 GGACGCCTCAAACATGCC 59.122 61.111 0.00 0.00 0.00 4.40
22 23 2.396157 GCAAAACCCGACCTAGGCG 61.396 63.158 9.30 13.43 0.00 5.52
23 24 1.002502 AGCAAAACCCGACCTAGGC 60.003 57.895 9.30 0.36 0.00 3.93
24 25 0.323629 TCAGCAAAACCCGACCTAGG 59.676 55.000 7.41 7.41 0.00 3.02
25 26 1.439679 GTCAGCAAAACCCGACCTAG 58.560 55.000 0.00 0.00 0.00 3.02
26 27 0.035739 GGTCAGCAAAACCCGACCTA 59.964 55.000 0.00 0.00 43.79 3.08
27 28 1.228154 GGTCAGCAAAACCCGACCT 60.228 57.895 0.00 0.00 43.79 3.85
28 29 2.613506 CGGTCAGCAAAACCCGACC 61.614 63.158 0.00 0.00 43.01 4.79
29 30 2.943653 CGGTCAGCAAAACCCGAC 59.056 61.111 0.00 0.00 43.01 4.79
40 41 2.084844 GCAATCAGTGAGCGGTCAG 58.915 57.895 19.24 7.59 31.53 3.51
41 42 4.284123 GCAATCAGTGAGCGGTCA 57.716 55.556 14.39 14.39 0.00 4.02
46 47 0.744414 TAAGCCCGCAATCAGTGAGC 60.744 55.000 0.00 0.00 0.00 4.26
47 48 1.009829 GTAAGCCCGCAATCAGTGAG 58.990 55.000 0.00 0.00 0.00 3.51
48 49 0.739462 CGTAAGCCCGCAATCAGTGA 60.739 55.000 0.00 0.00 0.00 3.41
49 50 0.739462 TCGTAAGCCCGCAATCAGTG 60.739 55.000 0.00 0.00 37.18 3.66
50 51 0.460284 CTCGTAAGCCCGCAATCAGT 60.460 55.000 0.00 0.00 37.18 3.41
51 52 1.154205 CCTCGTAAGCCCGCAATCAG 61.154 60.000 0.00 0.00 37.18 2.90
52 53 1.153449 CCTCGTAAGCCCGCAATCA 60.153 57.895 0.00 0.00 37.18 2.57
53 54 1.887707 CCCTCGTAAGCCCGCAATC 60.888 63.158 0.00 0.00 37.18 2.67
54 55 2.189521 CCCTCGTAAGCCCGCAAT 59.810 61.111 0.00 0.00 37.18 3.56
55 56 4.090588 CCCCTCGTAAGCCCGCAA 62.091 66.667 0.00 0.00 37.18 4.85
57 58 4.222847 CTCCCCTCGTAAGCCCGC 62.223 72.222 0.00 0.00 37.18 6.13
58 59 3.537874 CCTCCCCTCGTAAGCCCG 61.538 72.222 0.00 0.00 37.18 6.13
59 60 3.162154 CCCTCCCCTCGTAAGCCC 61.162 72.222 0.00 0.00 37.18 5.19
60 61 3.162154 CCCCTCCCCTCGTAAGCC 61.162 72.222 0.00 0.00 37.18 4.35
61 62 2.365237 ACCCCTCCCCTCGTAAGC 60.365 66.667 0.00 0.00 37.18 3.09
62 63 2.064581 CCACCCCTCCCCTCGTAAG 61.065 68.421 0.00 0.00 0.00 2.34
63 64 2.039951 CCACCCCTCCCCTCGTAA 59.960 66.667 0.00 0.00 0.00 3.18
64 65 2.948354 TCCACCCCTCCCCTCGTA 60.948 66.667 0.00 0.00 0.00 3.43
65 66 4.400251 CTCCACCCCTCCCCTCGT 62.400 72.222 0.00 0.00 0.00 4.18
67 68 3.581141 AACCTCCACCCCTCCCCTC 62.581 68.421 0.00 0.00 0.00 4.30
68 69 3.552911 AACCTCCACCCCTCCCCT 61.553 66.667 0.00 0.00 0.00 4.79
69 70 3.015753 GAACCTCCACCCCTCCCC 61.016 72.222 0.00 0.00 0.00 4.81
70 71 3.400054 CGAACCTCCACCCCTCCC 61.400 72.222 0.00 0.00 0.00 4.30
71 72 2.284405 TCGAACCTCCACCCCTCC 60.284 66.667 0.00 0.00 0.00 4.30
72 73 2.359967 CCTCGAACCTCCACCCCTC 61.360 68.421 0.00 0.00 0.00 4.30
73 74 2.284699 CCTCGAACCTCCACCCCT 60.285 66.667 0.00 0.00 0.00 4.79
74 75 4.097361 GCCTCGAACCTCCACCCC 62.097 72.222 0.00 0.00 0.00 4.95
75 76 3.319198 TGCCTCGAACCTCCACCC 61.319 66.667 0.00 0.00 0.00 4.61
76 77 2.047179 GTGCCTCGAACCTCCACC 60.047 66.667 0.00 0.00 0.00 4.61
77 78 2.047179 GGTGCCTCGAACCTCCAC 60.047 66.667 0.00 0.00 34.66 4.02
78 79 2.203788 AGGTGCCTCGAACCTCCA 60.204 61.111 1.23 0.00 45.13 3.86
90 91 7.976734 AGTTATATATCATCTAAAGCGAGGTGC 59.023 37.037 0.00 0.00 46.98 5.01
91 92 9.862371 AAGTTATATATCATCTAAAGCGAGGTG 57.138 33.333 0.00 0.00 0.00 4.00
109 110 9.173021 TGCAGTGCAGTGTATTTTAAGTTATAT 57.827 29.630 22.22 0.00 33.32 0.86
110 111 8.447833 GTGCAGTGCAGTGTATTTTAAGTTATA 58.552 33.333 20.42 0.00 40.08 0.98
111 112 7.174946 AGTGCAGTGCAGTGTATTTTAAGTTAT 59.825 33.333 24.51 0.00 41.01 1.89
112 113 6.485313 AGTGCAGTGCAGTGTATTTTAAGTTA 59.515 34.615 24.51 0.00 41.01 2.24
113 114 5.299279 AGTGCAGTGCAGTGTATTTTAAGTT 59.701 36.000 24.51 0.00 41.01 2.66
114 115 4.821805 AGTGCAGTGCAGTGTATTTTAAGT 59.178 37.500 24.51 0.00 41.01 2.24
115 116 5.049474 TGAGTGCAGTGCAGTGTATTTTAAG 60.049 40.000 29.69 0.00 42.74 1.85
116 117 4.819088 TGAGTGCAGTGCAGTGTATTTTAA 59.181 37.500 29.69 2.66 42.74 1.52
117 118 4.213270 GTGAGTGCAGTGCAGTGTATTTTA 59.787 41.667 29.69 6.23 42.74 1.52
118 119 3.003689 GTGAGTGCAGTGCAGTGTATTTT 59.996 43.478 29.69 8.43 42.74 1.82
119 120 2.549754 GTGAGTGCAGTGCAGTGTATTT 59.450 45.455 29.69 10.81 42.74 1.40
120 121 2.146342 GTGAGTGCAGTGCAGTGTATT 58.854 47.619 29.69 15.08 42.74 1.89
121 122 1.070601 TGTGAGTGCAGTGCAGTGTAT 59.929 47.619 29.69 8.24 42.74 2.29
122 123 0.463620 TGTGAGTGCAGTGCAGTGTA 59.536 50.000 29.69 15.87 42.74 2.90
123 124 0.179037 ATGTGAGTGCAGTGCAGTGT 60.179 50.000 29.69 12.22 42.74 3.55
124 125 1.799544 TATGTGAGTGCAGTGCAGTG 58.200 50.000 29.69 17.56 42.74 3.66
125 126 2.775911 ATATGTGAGTGCAGTGCAGT 57.224 45.000 25.33 25.33 45.60 4.40
126 127 3.268330 AGAATATGTGAGTGCAGTGCAG 58.732 45.455 20.42 0.00 40.08 4.41
127 128 3.339253 AGAATATGTGAGTGCAGTGCA 57.661 42.857 15.37 15.37 35.60 4.57
128 129 5.801350 TTTAGAATATGTGAGTGCAGTGC 57.199 39.130 8.58 8.58 0.00 4.40
129 130 7.543947 TGATTTAGAATATGTGAGTGCAGTG 57.456 36.000 0.00 0.00 0.00 3.66
130 131 8.743085 ATTGATTTAGAATATGTGAGTGCAGT 57.257 30.769 0.00 0.00 0.00 4.40
162 163 9.026074 CGCGAATTAATATATTTGGTTGGTTTT 57.974 29.630 0.00 0.00 0.00 2.43
163 164 8.192110 ACGCGAATTAATATATTTGGTTGGTTT 58.808 29.630 15.93 0.00 0.00 3.27
164 165 7.708998 ACGCGAATTAATATATTTGGTTGGTT 58.291 30.769 15.93 0.00 0.00 3.67
165 166 7.266922 ACGCGAATTAATATATTTGGTTGGT 57.733 32.000 15.93 0.00 0.00 3.67
166 167 8.500773 AGTACGCGAATTAATATATTTGGTTGG 58.499 33.333 15.93 0.22 0.00 3.77
167 168 9.313323 CAGTACGCGAATTAATATATTTGGTTG 57.687 33.333 15.93 0.00 0.00 3.77
168 169 8.013378 GCAGTACGCGAATTAATATATTTGGTT 58.987 33.333 15.93 0.00 0.00 3.67
169 170 7.171848 TGCAGTACGCGAATTAATATATTTGGT 59.828 33.333 15.93 0.00 46.97 3.67
170 171 7.514805 TGCAGTACGCGAATTAATATATTTGG 58.485 34.615 15.93 0.00 46.97 3.28
171 172 9.541724 AATGCAGTACGCGAATTAATATATTTG 57.458 29.630 15.93 0.00 46.97 2.32
176 177 7.744715 GCTTAAATGCAGTACGCGAATTAATAT 59.255 33.333 15.93 0.00 46.97 1.28
177 178 7.067116 GCTTAAATGCAGTACGCGAATTAATA 58.933 34.615 15.93 0.00 46.97 0.98
178 179 5.907391 GCTTAAATGCAGTACGCGAATTAAT 59.093 36.000 15.93 0.00 46.97 1.40
179 180 5.163844 TGCTTAAATGCAGTACGCGAATTAA 60.164 36.000 15.93 0.00 46.97 1.40
180 181 4.330347 TGCTTAAATGCAGTACGCGAATTA 59.670 37.500 15.93 0.00 46.97 1.40
181 182 3.126171 TGCTTAAATGCAGTACGCGAATT 59.874 39.130 15.93 0.00 46.97 2.17
182 183 2.675844 TGCTTAAATGCAGTACGCGAAT 59.324 40.909 15.93 0.00 46.97 3.34
183 184 2.070028 TGCTTAAATGCAGTACGCGAA 58.930 42.857 15.93 0.00 46.97 4.70
184 185 1.715993 TGCTTAAATGCAGTACGCGA 58.284 45.000 15.93 0.00 46.97 5.87
185 186 2.093625 TCTTGCTTAAATGCAGTACGCG 59.906 45.455 3.53 3.53 46.97 6.01
186 187 3.370978 TCTCTTGCTTAAATGCAGTACGC 59.629 43.478 0.00 0.00 44.27 4.42
187 188 5.530519 TTCTCTTGCTTAAATGCAGTACG 57.469 39.130 0.00 0.00 44.27 3.67
188 189 8.166367 CATTTTCTCTTGCTTAAATGCAGTAC 57.834 34.615 0.00 0.00 44.27 2.73
194 195 8.642020 GTTACTGCATTTTCTCTTGCTTAAATG 58.358 33.333 0.00 0.00 39.68 2.32
195 196 8.579863 AGTTACTGCATTTTCTCTTGCTTAAAT 58.420 29.630 0.00 0.00 39.60 1.40
196 197 7.940850 AGTTACTGCATTTTCTCTTGCTTAAA 58.059 30.769 0.00 0.00 39.60 1.52
197 198 7.510549 AGTTACTGCATTTTCTCTTGCTTAA 57.489 32.000 0.00 0.00 39.60 1.85
198 199 7.510549 AAGTTACTGCATTTTCTCTTGCTTA 57.489 32.000 0.00 0.00 39.60 3.09
199 200 6.396829 AAGTTACTGCATTTTCTCTTGCTT 57.603 33.333 0.00 0.00 39.60 3.91
200 201 6.396829 AAAGTTACTGCATTTTCTCTTGCT 57.603 33.333 0.00 0.00 39.60 3.91
201 202 7.222611 TGAAAAAGTTACTGCATTTTCTCTTGC 59.777 33.333 17.31 0.00 40.61 4.01
202 203 8.633075 TGAAAAAGTTACTGCATTTTCTCTTG 57.367 30.769 17.31 0.00 40.61 3.02
438 439 9.495572 TCAAACTTTACACTTTGACCAAATTTT 57.504 25.926 0.00 0.00 32.62 1.82
439 440 9.665719 ATCAAACTTTACACTTTGACCAAATTT 57.334 25.926 0.00 0.00 38.80 1.82
440 441 9.313118 GATCAAACTTTACACTTTGACCAAATT 57.687 29.630 0.00 0.00 38.80 1.82
441 442 8.474025 TGATCAAACTTTACACTTTGACCAAAT 58.526 29.630 0.00 0.00 38.80 2.32
442 443 7.831753 TGATCAAACTTTACACTTTGACCAAA 58.168 30.769 0.00 0.00 38.80 3.28
443 444 7.397892 TGATCAAACTTTACACTTTGACCAA 57.602 32.000 0.00 0.00 38.80 3.67
444 445 7.397892 TTGATCAAACTTTACACTTTGACCA 57.602 32.000 5.45 0.00 38.80 4.02
445 446 8.871686 AATTGATCAAACTTTACACTTTGACC 57.128 30.769 13.09 0.00 38.80 4.02
498 499 9.109393 GCATCATGGACTTAACTTTCATAAGTA 57.891 33.333 0.00 0.00 43.74 2.24
499 500 7.611467 TGCATCATGGACTTAACTTTCATAAGT 59.389 33.333 0.00 0.00 46.44 2.24
500 501 7.988737 TGCATCATGGACTTAACTTTCATAAG 58.011 34.615 0.00 0.00 36.62 1.73
501 502 7.936496 TGCATCATGGACTTAACTTTCATAA 57.064 32.000 0.00 0.00 0.00 1.90
502 503 7.994911 AGATGCATCATGGACTTAACTTTCATA 59.005 33.333 27.81 0.00 0.00 2.15
503 504 6.832384 AGATGCATCATGGACTTAACTTTCAT 59.168 34.615 27.81 0.00 0.00 2.57
504 505 6.182627 AGATGCATCATGGACTTAACTTTCA 58.817 36.000 27.81 0.00 0.00 2.69
505 506 6.690194 AGATGCATCATGGACTTAACTTTC 57.310 37.500 27.81 0.00 0.00 2.62
506 507 7.611467 TGTTAGATGCATCATGGACTTAACTTT 59.389 33.333 27.81 5.10 0.00 2.66
507 508 7.112122 TGTTAGATGCATCATGGACTTAACTT 58.888 34.615 27.81 5.53 0.00 2.66
508 509 6.653020 TGTTAGATGCATCATGGACTTAACT 58.347 36.000 27.81 5.73 0.00 2.24
509 510 6.925610 TGTTAGATGCATCATGGACTTAAC 57.074 37.500 27.81 22.34 0.00 2.01
510 511 9.797642 ATATTGTTAGATGCATCATGGACTTAA 57.202 29.630 27.81 12.89 0.00 1.85
511 512 9.797642 AATATTGTTAGATGCATCATGGACTTA 57.202 29.630 27.81 11.50 0.00 2.24
512 513 8.573885 CAATATTGTTAGATGCATCATGGACTT 58.426 33.333 27.81 8.45 0.00 3.01
513 514 7.940688 TCAATATTGTTAGATGCATCATGGACT 59.059 33.333 27.81 9.18 0.00 3.85
514 515 8.102800 TCAATATTGTTAGATGCATCATGGAC 57.897 34.615 27.81 18.74 0.00 4.02
515 516 8.873186 ATCAATATTGTTAGATGCATCATGGA 57.127 30.769 27.81 13.81 0.00 3.41
516 517 9.923143 AAATCAATATTGTTAGATGCATCATGG 57.077 29.630 27.81 8.97 0.00 3.66
614 615 9.675464 TCCGTTTCTTTTTACTAATCCACATAT 57.325 29.630 0.00 0.00 0.00 1.78
615 616 9.158233 CTCCGTTTCTTTTTACTAATCCACATA 57.842 33.333 0.00 0.00 0.00 2.29
616 617 7.120726 CCTCCGTTTCTTTTTACTAATCCACAT 59.879 37.037 0.00 0.00 0.00 3.21
617 618 6.428771 CCTCCGTTTCTTTTTACTAATCCACA 59.571 38.462 0.00 0.00 0.00 4.17
618 619 6.128090 CCCTCCGTTTCTTTTTACTAATCCAC 60.128 42.308 0.00 0.00 0.00 4.02
619 620 5.941647 CCCTCCGTTTCTTTTTACTAATCCA 59.058 40.000 0.00 0.00 0.00 3.41
620 621 6.175471 TCCCTCCGTTTCTTTTTACTAATCC 58.825 40.000 0.00 0.00 0.00 3.01
621 622 6.877855 ACTCCCTCCGTTTCTTTTTACTAATC 59.122 38.462 0.00 0.00 0.00 1.75
622 623 6.776744 ACTCCCTCCGTTTCTTTTTACTAAT 58.223 36.000 0.00 0.00 0.00 1.73
623 624 6.178607 ACTCCCTCCGTTTCTTTTTACTAA 57.821 37.500 0.00 0.00 0.00 2.24
629 630 6.370186 AGTTATACTCCCTCCGTTTCTTTT 57.630 37.500 0.00 0.00 0.00 2.27
643 644 3.118884 TGGAAAGTGCGGGAGTTATACTC 60.119 47.826 0.00 0.00 44.32 2.59
648 649 0.321298 GCTGGAAAGTGCGGGAGTTA 60.321 55.000 0.00 0.00 0.00 2.24
662 663 0.882484 TGCAAATGACGTTCGCTGGA 60.882 50.000 0.00 0.00 0.00 3.86
667 668 1.253116 CTGCATGCAAATGACGTTCG 58.747 50.000 22.88 1.53 0.00 3.95
740 749 1.887320 CAACTGCAGCAGCGTTTATC 58.113 50.000 23.05 0.00 46.23 1.75
765 774 1.097547 CAGCAGTGCCCTTATTCCGG 61.098 60.000 12.58 0.00 0.00 5.14
796 805 2.653726 TGGTTCAAGCACACAACTGAT 58.346 42.857 0.00 0.00 0.00 2.90
797 806 2.121291 TGGTTCAAGCACACAACTGA 57.879 45.000 0.00 0.00 0.00 3.41
798 807 2.923020 GTTTGGTTCAAGCACACAACTG 59.077 45.455 0.92 0.00 0.00 3.16
799 808 2.415357 CGTTTGGTTCAAGCACACAACT 60.415 45.455 6.68 0.00 0.00 3.16
867 876 2.742372 CTCCGTTTCACCAGGCCG 60.742 66.667 0.00 0.00 0.00 6.13
877 886 2.807108 GCTGAGTCAAAGGTCTCCGTTT 60.807 50.000 0.00 0.00 0.00 3.60
888 897 4.415881 TGGAGTGTTTAGCTGAGTCAAA 57.584 40.909 0.00 0.00 0.00 2.69
973 988 1.827344 TGATCGAGCTTGGAGTGTCAT 59.173 47.619 0.90 0.00 0.00 3.06
974 989 1.203287 CTGATCGAGCTTGGAGTGTCA 59.797 52.381 0.90 0.00 0.00 3.58
1191 1206 0.968901 ACCACCGCGAGTTCCTGATA 60.969 55.000 8.23 0.00 0.00 2.15
2127 2154 0.176680 AGACGAAGATCTGCGCCAAT 59.823 50.000 23.40 2.97 0.00 3.16
2129 2156 1.153765 CAGACGAAGATCTGCGCCA 60.154 57.895 23.40 0.00 39.77 5.69
2265 2298 4.397103 TCATCGAACCAGTAGTTGACGTAT 59.603 41.667 0.00 0.00 39.40 3.06
2559 2601 5.946972 TGCAAAGAGTACTAGCTACTTCTCT 59.053 40.000 0.00 9.61 35.66 3.10
2577 2619 4.479619 GCACTACAAATCTCCTTGCAAAG 58.520 43.478 0.00 0.00 45.69 2.77
2578 2620 3.058293 CGCACTACAAATCTCCTTGCAAA 60.058 43.478 0.00 0.00 0.00 3.68
2584 2639 2.490903 ACGTACGCACTACAAATCTCCT 59.509 45.455 16.72 0.00 0.00 3.69
2635 2710 7.450074 ACTAAGAATTATGTTATGGGCGATCA 58.550 34.615 0.00 0.00 0.00 2.92
2647 2722 7.121315 GGCAACTCTTCCAACTAAGAATTATGT 59.879 37.037 0.00 0.00 35.14 2.29
2648 2723 7.475840 GGCAACTCTTCCAACTAAGAATTATG 58.524 38.462 0.00 0.00 35.14 1.90
2673 2748 7.361799 GCCATTAGAACCAACACCTAAGTTTAG 60.362 40.741 0.00 0.00 0.00 1.85
2675 2750 5.243060 GCCATTAGAACCAACACCTAAGTTT 59.757 40.000 0.00 0.00 0.00 2.66
2676 2751 4.765339 GCCATTAGAACCAACACCTAAGTT 59.235 41.667 0.00 0.00 0.00 2.66
2677 2752 4.332828 GCCATTAGAACCAACACCTAAGT 58.667 43.478 0.00 0.00 0.00 2.24
2707 2790 3.391296 AGTTCCACCTCTGTTCTTTGCTA 59.609 43.478 0.00 0.00 0.00 3.49
2719 2802 4.508662 CACTATCTTCCAAGTTCCACCTC 58.491 47.826 0.00 0.00 0.00 3.85
2756 2839 0.740737 AGAAAAGCTGTTGCGCAAGT 59.259 45.000 25.78 5.68 45.42 3.16
2759 2842 1.299316 GCAGAAAAGCTGTTGCGCA 60.299 52.632 5.66 5.66 46.62 6.09
2760 2843 0.595825 AAGCAGAAAAGCTGTTGCGC 60.596 50.000 0.00 0.00 45.89 6.09
2761 2844 1.843992 AAAGCAGAAAAGCTGTTGCG 58.156 45.000 0.00 0.00 45.89 4.85
2762 2845 3.451526 AGAAAAGCAGAAAAGCTGTTGC 58.548 40.909 0.00 0.00 45.89 4.17
2763 2846 4.260091 GCAAGAAAAGCAGAAAAGCTGTTG 60.260 41.667 0.00 0.00 45.89 3.33
2764 2847 3.867493 GCAAGAAAAGCAGAAAAGCTGTT 59.133 39.130 0.00 0.00 45.89 3.16
2765 2848 3.131755 AGCAAGAAAAGCAGAAAAGCTGT 59.868 39.130 0.00 0.00 45.89 4.40
2766 2849 3.714391 AGCAAGAAAAGCAGAAAAGCTG 58.286 40.909 0.00 0.00 45.89 4.24
2768 2851 3.734735 CAGAGCAAGAAAAGCAGAAAAGC 59.265 43.478 0.00 0.00 0.00 3.51
2769 2852 3.734735 GCAGAGCAAGAAAAGCAGAAAAG 59.265 43.478 0.00 0.00 0.00 2.27
2770 2853 3.709987 GCAGAGCAAGAAAAGCAGAAAA 58.290 40.909 0.00 0.00 0.00 2.29
2771 2854 2.287188 CGCAGAGCAAGAAAAGCAGAAA 60.287 45.455 0.00 0.00 0.00 2.52
2772 2855 1.265095 CGCAGAGCAAGAAAAGCAGAA 59.735 47.619 0.00 0.00 0.00 3.02
2773 2856 0.870393 CGCAGAGCAAGAAAAGCAGA 59.130 50.000 0.00 0.00 0.00 4.26
2774 2857 0.590195 ACGCAGAGCAAGAAAAGCAG 59.410 50.000 0.00 0.00 0.00 4.24
2775 2858 1.024271 AACGCAGAGCAAGAAAAGCA 58.976 45.000 0.00 0.00 0.00 3.91
2776 2859 2.125461 AAACGCAGAGCAAGAAAAGC 57.875 45.000 0.00 0.00 0.00 3.51
2777 2860 4.551126 CGAATAAACGCAGAGCAAGAAAAG 59.449 41.667 0.00 0.00 0.00 2.27
2791 2874 6.074195 TGTTTCTTGTGTAGTCCGAATAAACG 60.074 38.462 0.00 0.00 0.00 3.60
2800 2883 4.448210 TCAACCTGTTTCTTGTGTAGTCC 58.552 43.478 0.00 0.00 0.00 3.85
2816 2899 2.121963 TGTCAGGGGGCTCAACCT 60.122 61.111 0.00 0.00 39.10 3.50
2830 2914 3.695022 ATCGTAGTGGCGCGGTGTC 62.695 63.158 8.83 0.00 0.00 3.67
2837 2921 1.401670 GCTAGATGGATCGTAGTGGCG 60.402 57.143 0.00 0.00 0.00 5.69
2838 2922 1.889829 AGCTAGATGGATCGTAGTGGC 59.110 52.381 0.00 0.00 0.00 5.01
2839 2923 2.230025 CCAGCTAGATGGATCGTAGTGG 59.770 54.545 22.93 0.00 43.57 4.00
2840 2924 2.887783 ACCAGCTAGATGGATCGTAGTG 59.112 50.000 33.03 3.77 43.57 2.74
2841 2925 2.887783 CACCAGCTAGATGGATCGTAGT 59.112 50.000 33.03 6.10 43.57 2.73
2842 2926 2.352225 GCACCAGCTAGATGGATCGTAG 60.352 54.545 33.03 15.03 43.57 3.51
2843 2927 1.613925 GCACCAGCTAGATGGATCGTA 59.386 52.381 33.03 0.00 43.57 3.43
2844 2928 0.390860 GCACCAGCTAGATGGATCGT 59.609 55.000 33.03 8.13 43.57 3.73
2845 2929 0.320247 GGCACCAGCTAGATGGATCG 60.320 60.000 33.03 20.20 43.57 3.69
2846 2930 0.761187 TGGCACCAGCTAGATGGATC 59.239 55.000 33.03 21.43 43.57 3.36
2847 2931 0.471617 GTGGCACCAGCTAGATGGAT 59.528 55.000 33.03 14.59 43.57 3.41
2848 2932 1.626356 GGTGGCACCAGCTAGATGGA 61.626 60.000 33.03 8.13 43.57 3.41
2849 2933 1.153086 GGTGGCACCAGCTAGATGG 60.153 63.158 31.26 25.39 46.47 3.51
2850 2934 1.153086 GGGTGGCACCAGCTAGATG 60.153 63.158 35.69 0.00 41.02 2.90
2851 2935 2.378634 GGGGTGGCACCAGCTAGAT 61.379 63.158 35.69 0.00 41.02 1.98
2852 2936 3.009115 GGGGTGGCACCAGCTAGA 61.009 66.667 35.69 0.00 41.02 2.43
2853 2937 3.329889 TGGGGTGGCACCAGCTAG 61.330 66.667 35.69 0.00 41.02 3.42
2863 2947 3.866582 GATCCGCTCCTGGGGTGG 61.867 72.222 20.53 20.53 45.40 4.61
2864 2948 3.083349 TGATCCGCTCCTGGGGTG 61.083 66.667 0.00 0.00 45.40 4.61
2865 2949 2.765807 CTGATCCGCTCCTGGGGT 60.766 66.667 0.00 0.00 45.40 4.95
2866 2950 2.765807 ACTGATCCGCTCCTGGGG 60.766 66.667 0.00 0.00 46.42 4.96
2867 2951 1.903877 AACACTGATCCGCTCCTGGG 61.904 60.000 0.00 0.00 0.00 4.45
2868 2952 0.824109 TAACACTGATCCGCTCCTGG 59.176 55.000 0.00 0.00 0.00 4.45
2869 2953 1.478510 ACTAACACTGATCCGCTCCTG 59.521 52.381 0.00 0.00 0.00 3.86
2870 2954 1.751924 GACTAACACTGATCCGCTCCT 59.248 52.381 0.00 0.00 0.00 3.69
2871 2955 1.534175 CGACTAACACTGATCCGCTCC 60.534 57.143 0.00 0.00 0.00 4.70
2872 2956 1.132643 ACGACTAACACTGATCCGCTC 59.867 52.381 0.00 0.00 0.00 5.03
2873 2957 1.174783 ACGACTAACACTGATCCGCT 58.825 50.000 0.00 0.00 0.00 5.52
2874 2958 2.353889 TCTACGACTAACACTGATCCGC 59.646 50.000 0.00 0.00 0.00 5.54
2875 2959 4.094590 AGTTCTACGACTAACACTGATCCG 59.905 45.833 0.00 0.00 0.00 4.18
2876 2960 5.564048 AGTTCTACGACTAACACTGATCC 57.436 43.478 0.00 0.00 0.00 3.36
2877 2961 7.536895 TCTAGTTCTACGACTAACACTGATC 57.463 40.000 0.00 0.00 32.10 2.92
2878 2962 9.263538 CTATCTAGTTCTACGACTAACACTGAT 57.736 37.037 0.00 0.00 32.10 2.90
2879 2963 8.473219 TCTATCTAGTTCTACGACTAACACTGA 58.527 37.037 0.00 0.00 32.10 3.41
2880 2964 8.645730 TCTATCTAGTTCTACGACTAACACTG 57.354 38.462 0.00 0.00 32.10 3.66
2902 2986 7.542890 CAGCACAAAAACTCTCTCTCTATCTA 58.457 38.462 0.00 0.00 0.00 1.98
2905 2989 4.934602 GCAGCACAAAAACTCTCTCTCTAT 59.065 41.667 0.00 0.00 0.00 1.98
2906 2990 4.310769 GCAGCACAAAAACTCTCTCTCTA 58.689 43.478 0.00 0.00 0.00 2.43
2915 2999 4.400410 GCACGCAGCACAAAAACT 57.600 50.000 0.00 0.00 44.79 2.66
2936 3020 1.263217 GAAGAACGAAGAAAAGCCGCA 59.737 47.619 0.00 0.00 0.00 5.69
2938 3022 3.879932 AAGAAGAACGAAGAAAAGCCG 57.120 42.857 0.00 0.00 0.00 5.52
2939 3023 8.287503 TGTTAATAAGAAGAACGAAGAAAAGCC 58.712 33.333 0.00 0.00 0.00 4.35
2966 3055 6.584563 CCTCTTTCGTTTGTTTTCAGTTTTGA 59.415 34.615 0.00 0.00 0.00 2.69
2982 3077 3.057337 CACGACCCCCTCTTTCGT 58.943 61.111 0.00 0.00 46.57 3.85
2983 3078 2.434359 GCACGACCCCCTCTTTCG 60.434 66.667 0.00 0.00 38.73 3.46
2984 3079 2.046217 GGCACGACCCCCTCTTTC 60.046 66.667 0.00 0.00 0.00 2.62
2994 3089 1.944676 CGAATAGCTCGGGCACGAC 60.945 63.158 7.15 4.66 45.59 4.34
3078 3173 3.722295 CATGCGCGTTTCGTGGGT 61.722 61.111 8.43 0.00 41.07 4.51
3097 3192 2.158652 AGCAGATAGGTAGTGTAGGCGA 60.159 50.000 0.00 0.00 0.00 5.54
3104 3199 4.465886 ACTCTGGTAGCAGATAGGTAGTG 58.534 47.826 24.03 12.58 0.00 2.74
3121 3216 0.868406 GTGCCTTGACCGAAACTCTG 59.132 55.000 0.00 0.00 0.00 3.35
3122 3217 0.468226 TGTGCCTTGACCGAAACTCT 59.532 50.000 0.00 0.00 0.00 3.24
3123 3218 1.305201 TTGTGCCTTGACCGAAACTC 58.695 50.000 0.00 0.00 0.00 3.01
3126 3221 1.403679 CTGTTTGTGCCTTGACCGAAA 59.596 47.619 0.00 0.00 0.00 3.46
3190 3287 2.370281 TCCTGTCGCTCATTCAGTTC 57.630 50.000 0.00 0.00 0.00 3.01
3191 3288 3.340814 AATCCTGTCGCTCATTCAGTT 57.659 42.857 0.00 0.00 0.00 3.16
3193 3290 3.785486 TGTAATCCTGTCGCTCATTCAG 58.215 45.455 0.00 0.00 0.00 3.02
3194 3291 3.885724 TGTAATCCTGTCGCTCATTCA 57.114 42.857 0.00 0.00 0.00 2.57
3195 3292 4.631813 ACTTTGTAATCCTGTCGCTCATTC 59.368 41.667 0.00 0.00 0.00 2.67
3198 3295 3.006430 TGACTTTGTAATCCTGTCGCTCA 59.994 43.478 0.00 0.00 0.00 4.26
3199 3296 3.585862 TGACTTTGTAATCCTGTCGCTC 58.414 45.455 0.00 0.00 0.00 5.03
3231 3332 3.410541 TGGGCGCCAGGATTAAGT 58.589 55.556 30.85 0.00 0.00 2.24
3248 3349 3.071023 TCGGTGTCATGGAAGTTTCTTCT 59.929 43.478 8.96 0.00 0.00 2.85
3254 3355 0.687354 AGCTCGGTGTCATGGAAGTT 59.313 50.000 0.00 0.00 0.00 2.66
3257 3358 0.684535 TGAAGCTCGGTGTCATGGAA 59.315 50.000 0.00 0.00 0.00 3.53
3279 3380 2.553028 GGGTCAAGTTCTTGGAGATGCA 60.553 50.000 11.82 0.00 0.00 3.96
3280 3381 2.087646 GGGTCAAGTTCTTGGAGATGC 58.912 52.381 11.82 0.00 0.00 3.91
3299 3400 0.899720 TAACCAAGTCACTAGGCCGG 59.100 55.000 0.00 0.00 0.00 6.13
3320 3421 1.811359 GATGGCCAGCTTGCTGATATC 59.189 52.381 22.50 17.04 0.00 1.63
3322 3423 0.179009 GGATGGCCAGCTTGCTGATA 60.179 55.000 22.39 9.45 0.00 2.15
3349 3450 1.732259 GCAAGGTGGACATCTTACACG 59.268 52.381 0.00 0.00 36.02 4.49
3353 3454 2.026262 GGAAGGCAAGGTGGACATCTTA 60.026 50.000 0.00 0.00 29.11 2.10
3354 3455 1.272147 GGAAGGCAAGGTGGACATCTT 60.272 52.381 0.00 0.00 30.48 2.40
3355 3456 0.329596 GGAAGGCAAGGTGGACATCT 59.670 55.000 0.00 0.00 0.00 2.90
3371 3472 3.055891 TCATTCGAGAGTGCATTGAGGAA 60.056 43.478 0.00 0.00 0.00 3.36
3383 3484 5.064452 CCTGAGGTTTCATTTCATTCGAGAG 59.936 44.000 0.00 0.00 31.68 3.20
3386 3487 4.651778 ACCTGAGGTTTCATTTCATTCGA 58.348 39.130 0.00 0.00 27.29 3.71
3395 3496 2.936993 GCACATCGACCTGAGGTTTCAT 60.937 50.000 5.21 0.00 38.78 2.57
3403 3504 0.390340 GAGCAAGCACATCGACCTGA 60.390 55.000 0.00 0.00 0.00 3.86
3404 3505 1.364626 GGAGCAAGCACATCGACCTG 61.365 60.000 0.00 0.00 0.00 4.00
3431 3532 0.040058 TGGCCAAGAATCCAGTGCAT 59.960 50.000 0.61 0.00 0.00 3.96
3440 3541 0.531532 CGATCGAGCTGGCCAAGAAT 60.532 55.000 10.26 0.00 0.00 2.40
3458 3559 1.010125 CGTGGACAACAGGTTTGCG 60.010 57.895 0.00 0.00 0.00 4.85
3462 3563 4.081322 AGTTATTCGTGGACAACAGGTT 57.919 40.909 0.00 0.00 36.39 3.50
3464 3565 4.062293 TGAAGTTATTCGTGGACAACAGG 58.938 43.478 0.00 0.00 38.34 4.00
3479 3580 1.752198 ACCAGCAGCGGTGAAGTTA 59.248 52.632 20.69 0.00 38.07 2.24
3494 3595 0.409092 ATCTGTTTGGATGGCCACCA 59.591 50.000 19.44 19.44 45.94 4.17
3501 3602 2.897436 TCTGAGCGATCTGTTTGGATG 58.103 47.619 0.90 0.00 0.00 3.51
3502 3603 3.055530 ACTTCTGAGCGATCTGTTTGGAT 60.056 43.478 0.90 0.00 0.00 3.41
3508 3609 2.166829 ACAGACTTCTGAGCGATCTGT 58.833 47.619 13.27 6.52 46.59 3.41
3511 3612 3.178267 CTGAACAGACTTCTGAGCGATC 58.822 50.000 13.27 0.00 46.59 3.69
3512 3613 2.673610 GCTGAACAGACTTCTGAGCGAT 60.674 50.000 13.27 0.00 46.59 4.58
3515 3616 1.270518 TGGCTGAACAGACTTCTGAGC 60.271 52.381 13.27 10.85 46.59 4.26
3517 3618 3.206150 GTTTGGCTGAACAGACTTCTGA 58.794 45.455 13.27 0.00 46.59 3.27
3536 3637 0.611062 ATGCTGCATGTCAGGCTGTT 60.611 50.000 15.44 3.78 43.06 3.16
3539 3640 0.611062 ACAATGCTGCATGTCAGGCT 60.611 50.000 17.00 0.00 43.06 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.