Multiple sequence alignment - TraesCS7B01G387900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G387900 chr7B 100.000 3843 0 0 1 3843 653891893 653895735 0.000000e+00 7097
1 TraesCS7B01G387900 chr7A 91.449 1567 82 19 2317 3841 675395742 675397298 0.000000e+00 2104
2 TraesCS7B01G387900 chr7A 87.647 1449 96 44 885 2289 675394223 675395632 0.000000e+00 1607
3 TraesCS7B01G387900 chr7A 81.985 655 76 22 1 617 675392290 675392940 5.690000e-143 518
4 TraesCS7B01G387900 chr7D 93.434 792 25 5 3079 3843 585303284 585304075 0.000000e+00 1149
5 TraesCS7B01G387900 chr7D 87.518 697 53 12 2392 3085 585302561 585303226 0.000000e+00 774
6 TraesCS7B01G387900 chr7D 87.676 641 59 12 1652 2289 585301620 585302243 0.000000e+00 728
7 TraesCS7B01G387900 chr7D 85.484 620 26 24 861 1436 585300855 585301454 4.280000e-164 588
8 TraesCS7B01G387900 chr7D 93.410 349 21 2 1 349 585300371 585300717 2.050000e-142 516
9 TraesCS7B01G387900 chr5D 94.389 499 26 2 3345 3843 532655139 532655635 0.000000e+00 765
10 TraesCS7B01G387900 chr5D 91.886 456 19 8 2904 3348 532654667 532655115 4.220000e-174 621


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G387900 chr7B 653891893 653895735 3842 False 7097.000000 7097 100.0000 1 3843 1 chr7B.!!$F1 3842
1 TraesCS7B01G387900 chr7A 675392290 675397298 5008 False 1409.666667 2104 87.0270 1 3841 3 chr7A.!!$F1 3840
2 TraesCS7B01G387900 chr7D 585300371 585304075 3704 False 751.000000 1149 89.5044 1 3843 5 chr7D.!!$F1 3842
3 TraesCS7B01G387900 chr5D 532654667 532655635 968 False 693.000000 765 93.1375 2904 3843 2 chr5D.!!$F1 939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 484 0.029035 GCAGAATCATGCTTGAGCCG 59.971 55.0 8.4 0.0 43.07 5.52 F
1016 2129 0.600255 GCCATGACGTTATCCCCTCG 60.600 60.0 0.0 0.0 0.00 4.63 F
2305 3466 0.033011 AGTAGGGCTCGACAGGACAT 60.033 55.0 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 3453 0.390340 TCTGCAATGTCCTGTCGAGC 60.390 55.000 0.0 0.0 0.0 5.03 R
2602 3986 0.605319 GGTTCATTGCGACTCCACCA 60.605 55.000 0.0 0.0 0.0 4.17 R
3413 4902 2.281484 TGTCGTTTGCCTCCCTGC 60.281 61.111 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.521906 TTATCTCCACTTAGCTGCTACAG 57.478 43.478 9.27 12.06 34.12 2.74
76 77 1.066573 ACTTAGCTGCTACAGTGCCAG 60.067 52.381 9.27 4.86 33.43 4.85
79 80 0.321122 AGCTGCTACAGTGCCAGTTC 60.321 55.000 0.00 0.00 33.43 3.01
151 152 4.993705 AAAAGGTATCTGACTTGGGTGA 57.006 40.909 0.00 0.00 0.00 4.02
162 163 6.644347 TCTGACTTGGGTGATTTAAGATCTC 58.356 40.000 0.00 0.00 0.00 2.75
171 172 7.087639 GGGTGATTTAAGATCTCTATCACTCG 58.912 42.308 26.83 0.00 42.79 4.18
189 190 1.621317 TCGAAACATACTCCTGTGGCA 59.379 47.619 0.00 0.00 0.00 4.92
217 218 0.748005 ACATGCACGGTAGGATTGGC 60.748 55.000 0.00 0.00 0.00 4.52
317 346 4.123497 AGAAACAAGCCAGTTTTCAACC 57.877 40.909 5.69 0.00 41.48 3.77
348 377 6.507958 TTATTTCGTGGAAGCATTTCATCA 57.492 33.333 0.00 0.00 34.90 3.07
349 378 5.587388 ATTTCGTGGAAGCATTTCATCAT 57.413 34.783 0.00 0.00 34.90 2.45
350 379 5.389859 TTTCGTGGAAGCATTTCATCATT 57.610 34.783 0.00 0.00 34.90 2.57
351 380 5.389859 TTCGTGGAAGCATTTCATCATTT 57.610 34.783 0.00 0.00 34.90 2.32
352 381 4.985413 TCGTGGAAGCATTTCATCATTTC 58.015 39.130 0.00 0.00 34.90 2.17
353 382 4.458642 TCGTGGAAGCATTTCATCATTTCA 59.541 37.500 0.00 0.00 34.90 2.69
354 383 5.125900 TCGTGGAAGCATTTCATCATTTCAT 59.874 36.000 0.00 0.00 34.90 2.57
355 384 5.457799 CGTGGAAGCATTTCATCATTTCATC 59.542 40.000 0.00 0.00 34.90 2.92
367 396 2.102084 TCATTTCATCAGGGAGCTCTCG 59.898 50.000 14.64 6.39 0.00 4.04
380 409 0.106894 GCTCTCGTGGGAATTAGGGG 59.893 60.000 0.00 0.00 0.00 4.79
386 415 1.472728 CGTGGGAATTAGGGGTTCTCG 60.473 57.143 0.00 0.00 0.00 4.04
394 423 2.467566 TAGGGGTTCTCGAGTTTTGC 57.532 50.000 13.13 0.00 0.00 3.68
395 424 0.602905 AGGGGTTCTCGAGTTTTGCG 60.603 55.000 13.13 0.00 0.00 4.85
415 445 2.079925 GAGAAGCGGCTGTTGAAGAAT 58.920 47.619 1.81 0.00 0.00 2.40
418 448 1.609208 AGCGGCTGTTGAAGAATTGT 58.391 45.000 0.00 0.00 0.00 2.71
421 451 2.664916 CGGCTGTTGAAGAATTGTTGG 58.335 47.619 0.00 0.00 0.00 3.77
425 455 5.564651 CGGCTGTTGAAGAATTGTTGGTATT 60.565 40.000 0.00 0.00 0.00 1.89
453 483 3.940723 GCAGAATCATGCTTGAGCC 57.059 52.632 8.40 2.72 43.07 4.70
454 484 0.029035 GCAGAATCATGCTTGAGCCG 59.971 55.000 8.40 0.00 43.07 5.52
455 485 1.660167 CAGAATCATGCTTGAGCCGA 58.340 50.000 8.40 0.00 41.18 5.54
456 486 2.011947 CAGAATCATGCTTGAGCCGAA 58.988 47.619 8.40 0.00 41.18 4.30
457 487 2.031807 CAGAATCATGCTTGAGCCGAAG 59.968 50.000 8.40 0.00 41.18 3.79
462 495 4.215349 GCTTGAGCCGAAGCAGAT 57.785 55.556 11.49 0.00 46.46 2.90
469 502 1.596477 GCCGAAGCAGATAGGCCAG 60.596 63.158 5.01 0.00 43.54 4.85
478 511 2.658285 CAGATAGGCCAGCCATGAAAA 58.342 47.619 12.03 0.00 38.92 2.29
487 520 4.176271 GCCAGCCATGAAAAAGATGTAAC 58.824 43.478 0.00 0.00 0.00 2.50
488 521 4.321899 GCCAGCCATGAAAAAGATGTAACA 60.322 41.667 0.00 0.00 0.00 2.41
489 522 5.163513 CCAGCCATGAAAAAGATGTAACAC 58.836 41.667 0.00 0.00 0.00 3.32
490 523 5.163513 CAGCCATGAAAAAGATGTAACACC 58.836 41.667 0.00 0.00 0.00 4.16
491 524 4.082787 AGCCATGAAAAAGATGTAACACCG 60.083 41.667 0.00 0.00 0.00 4.94
493 526 5.768317 CCATGAAAAAGATGTAACACCGTT 58.232 37.500 0.00 0.00 0.00 4.44
494 527 5.856455 CCATGAAAAAGATGTAACACCGTTC 59.144 40.000 0.00 0.00 0.00 3.95
495 528 6.434596 CATGAAAAAGATGTAACACCGTTCA 58.565 36.000 0.00 0.00 0.00 3.18
496 529 5.812652 TGAAAAAGATGTAACACCGTTCAC 58.187 37.500 0.00 0.00 0.00 3.18
497 530 5.354513 TGAAAAAGATGTAACACCGTTCACA 59.645 36.000 0.00 0.00 0.00 3.58
498 531 4.806342 AAAGATGTAACACCGTTCACAC 57.194 40.909 0.00 0.00 0.00 3.82
500 533 4.067972 AGATGTAACACCGTTCACACTT 57.932 40.909 0.00 0.00 0.00 3.16
501 534 3.807622 AGATGTAACACCGTTCACACTTG 59.192 43.478 0.00 0.00 0.00 3.16
502 535 2.975266 TGTAACACCGTTCACACTTGT 58.025 42.857 0.00 0.00 0.00 3.16
503 536 4.120792 TGTAACACCGTTCACACTTGTA 57.879 40.909 0.00 0.00 0.00 2.41
505 538 1.578583 ACACCGTTCACACTTGTAGC 58.421 50.000 0.00 0.00 0.00 3.58
517 551 5.986741 TCACACTTGTAGCGAACAATTTCTA 59.013 36.000 7.93 0.00 46.81 2.10
520 554 5.408604 CACTTGTAGCGAACAATTTCTACCT 59.591 40.000 7.93 0.00 46.81 3.08
531 565 6.824305 ACAATTTCTACCTCTTTCATGGTG 57.176 37.500 0.00 0.00 37.74 4.17
532 566 5.711976 ACAATTTCTACCTCTTTCATGGTGG 59.288 40.000 0.00 0.00 37.74 4.61
533 567 4.993705 TTTCTACCTCTTTCATGGTGGT 57.006 40.909 0.00 0.00 37.74 4.16
534 568 4.993705 TTCTACCTCTTTCATGGTGGTT 57.006 40.909 0.00 0.00 37.74 3.67
579 624 5.220854 GCTATTGACGCAATACCATCAGTTT 60.221 40.000 7.81 0.00 35.54 2.66
581 626 3.006940 TGACGCAATACCATCAGTTTCC 58.993 45.455 0.00 0.00 0.00 3.13
589 634 1.701847 ACCATCAGTTTCCTCAGCAGT 59.298 47.619 0.00 0.00 0.00 4.40
617 662 1.699083 TGCACTGACTTGAGAATCCCA 59.301 47.619 0.00 0.00 0.00 4.37
618 663 2.079925 GCACTGACTTGAGAATCCCAC 58.920 52.381 0.00 0.00 0.00 4.61
619 664 2.704572 CACTGACTTGAGAATCCCACC 58.295 52.381 0.00 0.00 0.00 4.61
620 665 1.276421 ACTGACTTGAGAATCCCACCG 59.724 52.381 0.00 0.00 0.00 4.94
622 667 1.001974 TGACTTGAGAATCCCACCGTG 59.998 52.381 0.00 0.00 0.00 4.94
623 668 1.002087 GACTTGAGAATCCCACCGTGT 59.998 52.381 0.00 0.00 0.00 4.49
624 669 2.232941 GACTTGAGAATCCCACCGTGTA 59.767 50.000 0.00 0.00 0.00 2.90
625 670 2.838202 ACTTGAGAATCCCACCGTGTAT 59.162 45.455 0.00 0.00 0.00 2.29
626 671 4.028131 ACTTGAGAATCCCACCGTGTATA 58.972 43.478 0.00 0.00 0.00 1.47
627 672 4.654262 ACTTGAGAATCCCACCGTGTATAT 59.346 41.667 0.00 0.00 0.00 0.86
628 673 5.130477 ACTTGAGAATCCCACCGTGTATATT 59.870 40.000 0.00 0.00 0.00 1.28
632 677 2.875087 TCCCACCGTGTATATTGACG 57.125 50.000 0.00 0.00 35.31 4.35
636 1676 5.069318 TCCCACCGTGTATATTGACGTATA 58.931 41.667 0.00 0.00 33.66 1.47
652 1692 6.608610 TGACGTATATATGGAAGATCACACG 58.391 40.000 6.89 0.00 0.00 4.49
654 1694 7.040961 TGACGTATATATGGAAGATCACACGAA 60.041 37.037 6.89 0.00 0.00 3.85
656 1696 7.808381 ACGTATATATGGAAGATCACACGAAAG 59.192 37.037 6.89 0.00 0.00 2.62
664 1704 5.064071 GGAAGATCACACGAAAGAATTCTCC 59.936 44.000 8.78 3.18 33.17 3.71
666 1706 5.551233 AGATCACACGAAAGAATTCTCCAA 58.449 37.500 8.78 0.00 33.17 3.53
681 1721 2.568956 TCTCCAATTCCACTGACCTCTG 59.431 50.000 0.00 0.00 0.00 3.35
747 1787 4.176752 GGCGACCCAGGACCCATC 62.177 72.222 0.00 0.00 0.00 3.51
810 1850 3.685214 CTCGAACTCCGCCACGAGG 62.685 68.421 0.00 0.00 45.22 4.63
811 1851 4.052229 CGAACTCCGCCACGAGGT 62.052 66.667 0.00 0.00 37.19 3.85
843 1883 3.803162 GGGAGGAGGAGGCTTGGC 61.803 72.222 0.00 0.00 0.00 4.52
844 1884 2.690510 GGAGGAGGAGGCTTGGCT 60.691 66.667 0.00 0.00 0.00 4.75
845 1885 2.741055 GGAGGAGGAGGCTTGGCTC 61.741 68.421 14.71 14.71 0.00 4.70
846 1886 2.690510 AGGAGGAGGCTTGGCTCC 60.691 66.667 28.85 28.85 39.93 4.70
847 1887 4.168291 GGAGGAGGCTTGGCTCCG 62.168 72.222 29.21 0.00 44.09 4.63
865 1905 1.692173 CGGCCTCCGGGGATAGAAAA 61.692 60.000 0.37 0.00 44.15 2.29
934 2025 2.507324 GAACGTGCGGAGGAGAGC 60.507 66.667 2.87 0.00 0.00 4.09
992 2083 0.900182 TCAGTCATCGAGCACCACCT 60.900 55.000 0.00 0.00 0.00 4.00
1016 2129 0.600255 GCCATGACGTTATCCCCTCG 60.600 60.000 0.00 0.00 0.00 4.63
1138 2266 3.184683 GCAGCAGCGTTCTCCTCG 61.185 66.667 0.00 0.00 0.00 4.63
1407 2541 2.175811 GAATTGTCGGTGCGTGCC 59.824 61.111 0.00 0.00 0.00 5.01
1424 2559 1.599797 CCGCTTCCTCCGGTGTTTT 60.600 57.895 0.00 0.00 40.84 2.43
1456 2591 5.047306 TGTCGTACTGAGGTTGATTCTGAAT 60.047 40.000 1.81 1.81 0.00 2.57
1459 2594 5.869344 CGTACTGAGGTTGATTCTGAATGAA 59.131 40.000 7.78 2.55 39.24 2.57
1469 2604 6.829229 TGATTCTGAATGAATGAACTGCTT 57.171 33.333 7.78 0.00 44.70 3.91
1475 2610 7.105588 TCTGAATGAATGAACTGCTTTAGCTA 58.894 34.615 3.10 0.00 42.66 3.32
1477 2612 6.881065 TGAATGAATGAACTGCTTTAGCTACT 59.119 34.615 3.10 0.00 42.66 2.57
1480 2615 7.170393 TGAATGAACTGCTTTAGCTACTAGA 57.830 36.000 0.00 0.00 42.66 2.43
1481 2616 7.786030 TGAATGAACTGCTTTAGCTACTAGAT 58.214 34.615 0.00 0.00 42.66 1.98
1482 2617 8.260818 TGAATGAACTGCTTTAGCTACTAGATT 58.739 33.333 0.00 0.00 42.66 2.40
1483 2618 8.655651 AATGAACTGCTTTAGCTACTAGATTC 57.344 34.615 0.00 1.13 42.66 2.52
1511 2649 3.084039 TCTGAATTGGCGAGCTGAATTT 58.916 40.909 0.00 0.00 0.00 1.82
1517 2655 2.083774 TGGCGAGCTGAATTTTGTAGG 58.916 47.619 0.00 0.00 0.00 3.18
1559 2708 9.884636 TGTGAAATGCTTTAGCTACTAGATTTA 57.115 29.630 0.00 0.00 42.66 1.40
1611 2768 9.045223 AGATTAGTTTGCTTCATTTCAAAAACC 57.955 29.630 0.00 0.00 34.44 3.27
1646 2803 2.104111 AGAATGACCGTCAGTTTCCACA 59.896 45.455 7.41 0.00 0.00 4.17
1675 2832 5.484173 TCACTGTTTTTGCTCTTACTGTG 57.516 39.130 0.00 0.00 39.98 3.66
1732 2889 5.333645 GGCATGAATAACAGCAGTAGATTCG 60.334 44.000 0.00 2.15 34.95 3.34
1733 2890 5.235186 GCATGAATAACAGCAGTAGATTCGT 59.765 40.000 0.00 8.23 34.95 3.85
1949 3106 5.163723 TGGAACGATATTCGGGATATACGAC 60.164 44.000 12.17 7.61 45.59 4.34
2015 3172 1.136147 CAATTCACTGCAGAGCGGC 59.864 57.895 23.35 0.00 38.71 6.53
2060 3217 2.159043 CGTCCTGTATTCATCTGCCACT 60.159 50.000 0.00 0.00 0.00 4.00
2081 3238 2.704725 TTTTCTGCATCAGTTTCGGC 57.295 45.000 0.00 0.00 32.61 5.54
2096 3253 4.424711 GGCGCAGGAACCCATGGA 62.425 66.667 15.22 0.00 0.00 3.41
2102 3259 1.616725 GCAGGAACCCATGGATTCACA 60.617 52.381 20.89 0.00 0.00 3.58
2114 3271 6.482524 CCATGGATTCACATTGGATAGATCT 58.517 40.000 5.56 0.00 0.00 2.75
2197 3357 9.456147 AGATGTAGTATATCAGTATTTCTCGCT 57.544 33.333 9.31 0.00 0.00 4.93
2202 3362 8.850007 AGTATATCAGTATTTCTCGCTACAGA 57.150 34.615 0.00 0.00 0.00 3.41
2207 3367 7.582435 TCAGTATTTCTCGCTACAGAAAAAG 57.418 36.000 6.48 0.13 43.88 2.27
2209 3369 7.542477 TCAGTATTTCTCGCTACAGAAAAAGAG 59.458 37.037 6.48 0.00 43.88 2.85
2222 3382 9.751542 CTACAGAAAAAGAGATGTATATCGGTT 57.248 33.333 0.00 0.00 38.38 4.44
2223 3383 8.649973 ACAGAAAAAGAGATGTATATCGGTTC 57.350 34.615 0.00 0.00 38.38 3.62
2289 3450 7.786046 TGATGTTCTTTACCTAGTTCCAGTA 57.214 36.000 0.00 0.00 0.00 2.74
2291 3452 6.600882 TGTTCTTTACCTAGTTCCAGTAGG 57.399 41.667 3.44 3.44 44.97 3.18
2292 3453 5.482878 TGTTCTTTACCTAGTTCCAGTAGGG 59.517 44.000 9.10 0.00 43.98 3.53
2295 3456 2.162264 ACCTAGTTCCAGTAGGGCTC 57.838 55.000 9.10 0.00 43.98 4.70
2297 3458 1.409802 CCTAGTTCCAGTAGGGCTCGA 60.410 57.143 0.00 0.00 37.58 4.04
2298 3459 1.677052 CTAGTTCCAGTAGGGCTCGAC 59.323 57.143 0.00 0.00 36.21 4.20
2299 3460 0.251653 AGTTCCAGTAGGGCTCGACA 60.252 55.000 0.00 0.00 36.21 4.35
2300 3461 0.173708 GTTCCAGTAGGGCTCGACAG 59.826 60.000 0.00 0.00 36.21 3.51
2301 3462 0.970937 TTCCAGTAGGGCTCGACAGG 60.971 60.000 1.52 1.52 36.21 4.00
2305 3466 0.033011 AGTAGGGCTCGACAGGACAT 60.033 55.000 0.00 0.00 0.00 3.06
2306 3467 0.824759 GTAGGGCTCGACAGGACATT 59.175 55.000 0.00 0.00 0.00 2.71
2307 3468 0.824109 TAGGGCTCGACAGGACATTG 59.176 55.000 0.00 0.00 0.00 2.82
2308 3469 2.109126 GGGCTCGACAGGACATTGC 61.109 63.158 0.00 0.00 0.00 3.56
2309 3470 1.375908 GGCTCGACAGGACATTGCA 60.376 57.895 0.00 0.00 0.00 4.08
2310 3471 1.364626 GGCTCGACAGGACATTGCAG 61.365 60.000 0.00 0.00 0.00 4.41
2312 3473 1.941209 GCTCGACAGGACATTGCAGAA 60.941 52.381 0.00 0.00 0.00 3.02
2313 3474 2.625737 CTCGACAGGACATTGCAGAAT 58.374 47.619 0.00 0.00 0.00 2.40
2351 3627 3.648339 TTCAAATTGTGCCTTCTCTGC 57.352 42.857 0.00 0.00 0.00 4.26
2360 3636 1.003580 TGCCTTCTCTGCCTTTAGGTG 59.996 52.381 0.00 0.00 37.57 4.00
2367 3643 2.039084 CTCTGCCTTTAGGTGTCCAGTT 59.961 50.000 0.00 0.00 37.57 3.16
2372 3648 2.554564 CCTTTAGGTGTCCAGTTTCCCC 60.555 54.545 0.00 0.00 0.00 4.81
2373 3649 2.127651 TTAGGTGTCCAGTTTCCCCT 57.872 50.000 0.00 0.00 0.00 4.79
2374 3650 1.358152 TAGGTGTCCAGTTTCCCCTG 58.642 55.000 0.00 0.00 0.00 4.45
2375 3651 0.697854 AGGTGTCCAGTTTCCCCTGT 60.698 55.000 0.00 0.00 0.00 4.00
2376 3652 0.537371 GGTGTCCAGTTTCCCCTGTG 60.537 60.000 0.00 0.00 0.00 3.66
2377 3653 0.472471 GTGTCCAGTTTCCCCTGTGA 59.528 55.000 0.00 0.00 0.00 3.58
2379 3655 2.304761 GTGTCCAGTTTCCCCTGTGATA 59.695 50.000 0.00 0.00 0.00 2.15
2382 3658 4.975147 TGTCCAGTTTCCCCTGTGATATAT 59.025 41.667 0.00 0.00 0.00 0.86
2383 3659 5.163205 TGTCCAGTTTCCCCTGTGATATATG 60.163 44.000 0.00 0.00 0.00 1.78
2384 3660 4.350816 TCCAGTTTCCCCTGTGATATATGG 59.649 45.833 0.00 0.00 0.00 2.74
2386 3662 5.065914 CAGTTTCCCCTGTGATATATGGTG 58.934 45.833 0.00 0.00 0.00 4.17
2390 3666 3.721575 TCCCCTGTGATATATGGTGCTTT 59.278 43.478 0.00 0.00 0.00 3.51
2402 3786 8.807948 ATATATGGTGCTTTAACAGTCACTTT 57.192 30.769 0.00 0.00 32.87 2.66
2406 3790 6.966021 TGGTGCTTTAACAGTCACTTTTATC 58.034 36.000 0.00 0.00 32.87 1.75
2423 3807 7.967303 CACTTTTATCTTCCTCTCAAAATCTGC 59.033 37.037 0.00 0.00 0.00 4.26
2429 3813 4.445452 TCCTCTCAAAATCTGCAATTGC 57.555 40.909 23.69 23.69 42.50 3.56
2602 3986 7.223582 GCTGATTTTCATCGGACGATCATATAT 59.776 37.037 3.94 0.00 37.97 0.86
2623 4007 0.605319 GTGGAGTCGCAATGAACCCA 60.605 55.000 0.00 0.00 0.00 4.51
2653 4037 0.945265 TTCGGTTGGTTTACGAGGCG 60.945 55.000 0.00 0.00 37.95 5.52
2707 4091 2.178890 GCGAGGCTCAGATGGCAAG 61.179 63.158 15.95 0.00 34.73 4.01
2728 4112 4.107072 AGACCAGAATCCTCTCCATTCAA 58.893 43.478 0.00 0.00 33.34 2.69
2848 4232 9.793259 AATCCTGGATACGATGTTTAATGTTAT 57.207 29.630 10.13 0.00 42.51 1.89
2851 4235 6.883129 TGGATACGATGTTTAATGTTATGCG 58.117 36.000 0.00 0.00 42.51 4.73
2860 4244 5.470437 TGTTTAATGTTATGCGTGAGGTGAA 59.530 36.000 0.00 0.00 0.00 3.18
2862 4246 6.751514 TTAATGTTATGCGTGAGGTGAAAT 57.248 33.333 0.00 0.00 0.00 2.17
2894 4280 7.597743 GGTATTGTAATGAGGTAACCGATGTAG 59.402 40.741 0.00 0.00 37.17 2.74
2937 4323 8.397906 GCAAGCACAATATTGTCTCTGTATTTA 58.602 33.333 18.25 0.00 39.91 1.40
2990 4385 3.449018 CAGAGTACTGCATAGTGGAGGTT 59.551 47.826 0.00 0.00 40.38 3.50
3038 4435 9.531942 CTGAAAACAAAATATGCAATATGGCTA 57.468 29.630 3.19 0.00 38.94 3.93
3282 4744 2.332063 ATAAACCCTGCAGATGACCG 57.668 50.000 17.39 0.00 0.00 4.79
3358 4847 1.644509 ACAGGCATACAGGTCACAGA 58.355 50.000 0.00 0.00 0.00 3.41
3413 4902 5.879223 AGAAATGACACCTTAGATCAGCAAG 59.121 40.000 0.00 0.00 0.00 4.01
3494 4983 1.087501 GAAAGCGGGAGGATCACAAC 58.912 55.000 0.00 0.00 39.81 3.32
3763 5252 5.120830 AGTTTACAGTGTTCATTCTGCGATC 59.879 40.000 0.00 0.00 35.37 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.204146 TCCCTATGGAGAACTGGCAC 58.796 55.000 0.00 0.00 35.03 5.01
76 77 5.684704 TGATTTGACATCCCTATGGAGAAC 58.315 41.667 0.00 0.00 46.08 3.01
79 80 4.070716 GCTGATTTGACATCCCTATGGAG 58.929 47.826 0.00 0.00 46.08 3.86
130 131 4.993705 TCACCCAAGTCAGATACCTTTT 57.006 40.909 0.00 0.00 0.00 2.27
162 163 5.974158 CACAGGAGTATGTTTCGAGTGATAG 59.026 44.000 0.00 0.00 0.00 2.08
171 172 3.146066 TGTTGCCACAGGAGTATGTTTC 58.854 45.455 0.00 0.00 0.00 2.78
189 190 3.438781 CCTACCGTGCATGTACAATTGTT 59.561 43.478 17.78 0.00 0.00 2.83
205 206 3.635373 TGTCTAAGTAGCCAATCCTACCG 59.365 47.826 0.00 0.00 38.74 4.02
217 218 8.185505 GTCAGTTCATACTCCTTGTCTAAGTAG 58.814 40.741 0.00 0.00 30.26 2.57
317 346 4.576053 TGCTTCCACGAAATAATGAGATGG 59.424 41.667 0.00 0.00 0.00 3.51
348 377 2.114616 ACGAGAGCTCCCTGATGAAAT 58.885 47.619 10.93 0.00 0.00 2.17
349 378 1.205655 CACGAGAGCTCCCTGATGAAA 59.794 52.381 10.93 0.00 0.00 2.69
350 379 0.820226 CACGAGAGCTCCCTGATGAA 59.180 55.000 10.93 0.00 0.00 2.57
351 380 1.039785 CCACGAGAGCTCCCTGATGA 61.040 60.000 10.93 0.00 0.00 2.92
352 381 1.440893 CCACGAGAGCTCCCTGATG 59.559 63.158 10.93 2.11 0.00 3.07
353 382 1.760086 CCCACGAGAGCTCCCTGAT 60.760 63.158 10.93 0.00 0.00 2.90
354 383 2.363018 CCCACGAGAGCTCCCTGA 60.363 66.667 10.93 0.00 0.00 3.86
355 384 1.333636 ATTCCCACGAGAGCTCCCTG 61.334 60.000 10.93 2.74 0.00 4.45
367 396 1.835531 TCGAGAACCCCTAATTCCCAC 59.164 52.381 0.00 0.00 0.00 4.61
386 415 1.154395 GCCGCTTCTCGCAAAACTC 60.154 57.895 0.00 0.00 39.08 3.01
394 423 0.667487 TCTTCAACAGCCGCTTCTCG 60.667 55.000 0.00 0.00 38.08 4.04
395 424 1.512926 TTCTTCAACAGCCGCTTCTC 58.487 50.000 0.00 0.00 0.00 2.87
402 431 3.733443 ACCAACAATTCTTCAACAGCC 57.267 42.857 0.00 0.00 0.00 4.85
403 432 5.119125 GCAATACCAACAATTCTTCAACAGC 59.881 40.000 0.00 0.00 0.00 4.40
404 433 6.215121 TGCAATACCAACAATTCTTCAACAG 58.785 36.000 0.00 0.00 0.00 3.16
406 435 6.867816 TGATGCAATACCAACAATTCTTCAAC 59.132 34.615 0.00 0.00 0.00 3.18
408 437 6.587206 TGATGCAATACCAACAATTCTTCA 57.413 33.333 0.00 0.00 0.00 3.02
409 438 9.241317 CTATTGATGCAATACCAACAATTCTTC 57.759 33.333 0.00 0.00 38.57 2.87
415 445 5.651576 TCTGCTATTGATGCAATACCAACAA 59.348 36.000 0.00 0.00 40.13 2.83
418 448 6.546772 TGATTCTGCTATTGATGCAATACCAA 59.453 34.615 0.00 0.00 40.13 3.67
421 451 6.527023 GCATGATTCTGCTATTGATGCAATAC 59.473 38.462 0.00 0.00 40.13 1.89
425 455 4.499037 GCATGATTCTGCTATTGATGCA 57.501 40.909 0.00 0.00 39.12 3.96
452 482 1.596477 GCTGGCCTATCTGCTTCGG 60.596 63.158 3.32 0.00 0.00 4.30
453 483 1.596477 GGCTGGCCTATCTGCTTCG 60.596 63.158 3.32 0.00 33.09 3.79
454 484 0.110104 ATGGCTGGCCTATCTGCTTC 59.890 55.000 13.05 0.00 36.94 3.86
455 485 0.178998 CATGGCTGGCCTATCTGCTT 60.179 55.000 13.05 0.00 36.94 3.91
456 486 1.058428 TCATGGCTGGCCTATCTGCT 61.058 55.000 13.05 0.00 36.94 4.24
457 487 0.179009 TTCATGGCTGGCCTATCTGC 60.179 55.000 13.05 0.22 36.94 4.26
458 488 2.353357 TTTCATGGCTGGCCTATCTG 57.647 50.000 13.05 5.65 36.94 2.90
459 489 3.053395 TCTTTTTCATGGCTGGCCTATCT 60.053 43.478 13.05 0.00 36.94 1.98
462 495 2.897271 TCTTTTTCATGGCTGGCCTA 57.103 45.000 13.05 0.04 36.94 3.93
469 502 4.165779 CGGTGTTACATCTTTTTCATGGC 58.834 43.478 0.00 0.00 0.00 4.40
478 511 4.067972 AGTGTGAACGGTGTTACATCTT 57.932 40.909 0.00 0.00 0.00 2.40
487 520 0.506932 CGCTACAAGTGTGAACGGTG 59.493 55.000 0.00 0.00 0.00 4.94
488 521 0.386476 TCGCTACAAGTGTGAACGGT 59.614 50.000 0.00 0.00 0.00 4.83
489 522 1.191647 GTTCGCTACAAGTGTGAACGG 59.808 52.381 0.00 0.00 42.42 4.44
490 523 2.555220 GTTCGCTACAAGTGTGAACG 57.445 50.000 0.00 0.00 42.42 3.95
500 533 5.401531 AGAGGTAGAAATTGTTCGCTACA 57.598 39.130 0.00 0.00 38.90 2.74
501 534 6.367969 TGAAAGAGGTAGAAATTGTTCGCTAC 59.632 38.462 0.00 0.00 38.90 3.58
502 535 6.460781 TGAAAGAGGTAGAAATTGTTCGCTA 58.539 36.000 0.00 0.00 38.90 4.26
503 536 5.305585 TGAAAGAGGTAGAAATTGTTCGCT 58.694 37.500 0.00 0.00 38.90 4.93
505 538 6.149474 ACCATGAAAGAGGTAGAAATTGTTCG 59.851 38.462 0.00 0.00 38.90 3.95
517 551 1.271379 CCGAACCACCATGAAAGAGGT 60.271 52.381 0.00 0.00 39.10 3.85
520 554 2.649531 AACCGAACCACCATGAAAGA 57.350 45.000 0.00 0.00 0.00 2.52
531 565 6.691388 GCATAATCATACTTGAAAACCGAACC 59.309 38.462 0.00 0.00 34.96 3.62
532 566 7.472543 AGCATAATCATACTTGAAAACCGAAC 58.527 34.615 0.00 0.00 34.96 3.95
533 567 7.624360 AGCATAATCATACTTGAAAACCGAA 57.376 32.000 0.00 0.00 34.96 4.30
534 568 8.902540 ATAGCATAATCATACTTGAAAACCGA 57.097 30.769 0.00 0.00 34.96 4.69
563 608 3.270027 TGAGGAAACTGATGGTATTGCG 58.730 45.455 0.00 0.00 44.43 4.85
602 647 1.001974 CACGGTGGGATTCTCAAGTCA 59.998 52.381 0.00 0.00 0.00 3.41
617 662 8.510243 TCCATATATACGTCAATATACACGGT 57.490 34.615 10.26 2.89 40.43 4.83
618 663 9.447040 CTTCCATATATACGTCAATATACACGG 57.553 37.037 10.26 0.00 40.43 4.94
626 671 7.755373 CGTGTGATCTTCCATATATACGTCAAT 59.245 37.037 0.00 0.00 0.00 2.57
627 672 7.040961 TCGTGTGATCTTCCATATATACGTCAA 60.041 37.037 0.00 0.00 0.00 3.18
628 673 6.428771 TCGTGTGATCTTCCATATATACGTCA 59.571 38.462 0.00 0.00 0.00 4.35
632 677 9.692749 TTCTTTCGTGTGATCTTCCATATATAC 57.307 33.333 0.00 0.00 0.00 1.47
636 1676 7.989741 AGAATTCTTTCGTGTGATCTTCCATAT 59.010 33.333 0.88 0.00 36.93 1.78
652 1692 6.349694 GGTCAGTGGAATTGGAGAATTCTTTC 60.350 42.308 9.87 9.05 44.81 2.62
654 1694 5.012893 GGTCAGTGGAATTGGAGAATTCTT 58.987 41.667 9.87 0.00 44.81 2.52
656 1696 4.593956 AGGTCAGTGGAATTGGAGAATTC 58.406 43.478 0.00 0.00 44.74 2.17
664 1704 1.457346 GCCAGAGGTCAGTGGAATTG 58.543 55.000 0.00 0.00 35.67 2.32
666 1706 1.903877 CGGCCAGAGGTCAGTGGAAT 61.904 60.000 2.24 0.00 35.67 3.01
850 1890 0.532196 GGCGTTTTCTATCCCCGGAG 60.532 60.000 0.73 0.00 0.00 4.63
851 1891 1.266160 TGGCGTTTTCTATCCCCGGA 61.266 55.000 0.73 0.00 0.00 5.14
852 1892 0.179029 ATGGCGTTTTCTATCCCCGG 60.179 55.000 0.00 0.00 0.00 5.73
853 1893 0.944386 CATGGCGTTTTCTATCCCCG 59.056 55.000 0.00 0.00 0.00 5.73
854 1894 1.318576 CCATGGCGTTTTCTATCCCC 58.681 55.000 0.00 0.00 0.00 4.81
855 1895 1.133915 TCCCATGGCGTTTTCTATCCC 60.134 52.381 6.09 0.00 0.00 3.85
856 1896 2.222027 CTCCCATGGCGTTTTCTATCC 58.778 52.381 6.09 0.00 0.00 2.59
859 1899 1.209504 CTCCTCCCATGGCGTTTTCTA 59.790 52.381 6.09 0.00 0.00 2.10
862 1902 0.404040 TTCTCCTCCCATGGCGTTTT 59.596 50.000 6.09 0.00 0.00 2.43
865 1905 0.035056 CTTTTCTCCTCCCATGGCGT 60.035 55.000 6.09 0.00 0.00 5.68
909 1993 2.432628 CCGCACGTTCTCCACTCC 60.433 66.667 0.00 0.00 0.00 3.85
911 1995 2.651361 CTCCGCACGTTCTCCACT 59.349 61.111 0.00 0.00 0.00 4.00
934 2025 1.192793 GAGAAACGCTCCTTCGATCG 58.807 55.000 9.36 9.36 37.69 3.69
973 2064 0.900182 AGGTGGTGCTCGATGACTGA 60.900 55.000 0.00 0.00 0.00 3.41
992 2083 0.390124 GGATAACGTCATGGCCGGTA 59.610 55.000 1.90 6.03 31.20 4.02
1414 2548 3.003482 CGACACCAAAATAAAACACCGGA 59.997 43.478 9.46 0.00 0.00 5.14
1416 2550 3.954999 ACGACACCAAAATAAAACACCG 58.045 40.909 0.00 0.00 0.00 4.94
1417 2551 5.910723 CAGTACGACACCAAAATAAAACACC 59.089 40.000 0.00 0.00 0.00 4.16
1424 2559 4.877378 ACCTCAGTACGACACCAAAATA 57.123 40.909 0.00 0.00 0.00 1.40
1456 2591 7.170393 TCTAGTAGCTAAAGCAGTTCATTCA 57.830 36.000 4.54 0.00 45.16 2.57
1459 2594 8.017418 AGAATCTAGTAGCTAAAGCAGTTCAT 57.983 34.615 4.54 0.00 45.16 2.57
1469 2604 8.768501 TCAGAATCCAAGAATCTAGTAGCTAA 57.231 34.615 0.00 0.00 0.00 3.09
1475 2610 6.545298 GCCAATTCAGAATCCAAGAATCTAGT 59.455 38.462 0.00 0.00 31.21 2.57
1477 2612 5.528690 CGCCAATTCAGAATCCAAGAATCTA 59.471 40.000 0.00 0.00 31.21 1.98
1480 2615 4.272489 TCGCCAATTCAGAATCCAAGAAT 58.728 39.130 0.00 0.00 33.68 2.40
1481 2616 3.684908 TCGCCAATTCAGAATCCAAGAA 58.315 40.909 0.00 0.00 0.00 2.52
1482 2617 3.273434 CTCGCCAATTCAGAATCCAAGA 58.727 45.455 0.00 0.00 0.00 3.02
1483 2618 2.223433 GCTCGCCAATTCAGAATCCAAG 60.223 50.000 0.00 0.00 0.00 3.61
1511 2649 3.139397 AGTCCACAATCCAAACCCTACAA 59.861 43.478 0.00 0.00 0.00 2.41
1517 2655 2.582052 TCACAGTCCACAATCCAAACC 58.418 47.619 0.00 0.00 0.00 3.27
1559 2708 8.798859 AGTAGCAGAAATTTGTGAATGTAGAT 57.201 30.769 18.79 0.00 0.00 1.98
1609 2766 6.159693 GTCATTCTTGAGACGAGGTACGGT 62.160 50.000 0.00 0.00 38.30 4.83
1611 2768 3.427243 GTCATTCTTGAGACGAGGTACG 58.573 50.000 0.00 0.00 39.27 3.67
1675 2832 5.344743 TGTTCCATTGGAGATACTCAGAC 57.655 43.478 5.36 0.00 31.21 3.51
1759 2916 4.056740 CAGGATGATCTCGTTCTGGATTG 58.943 47.826 0.37 0.00 39.69 2.67
1763 2920 2.542618 CGACAGGATGATCTCGTTCTGG 60.543 54.545 11.50 0.00 41.72 3.86
1949 3106 1.374758 GTCGAGTTCCACCAGCCTG 60.375 63.158 0.00 0.00 0.00 4.85
2015 3172 3.184683 GCAGCGACCAAGCGAGAG 61.185 66.667 0.00 0.00 43.00 3.20
2060 3217 3.181511 CGCCGAAACTGATGCAGAAAATA 60.182 43.478 0.82 0.00 35.18 1.40
2081 3238 0.394216 TGAATCCATGGGTTCCTGCG 60.394 55.000 30.63 0.00 0.00 5.18
2096 3253 7.732140 TCTCCTGTAGATCTATCCAATGTGAAT 59.268 37.037 5.57 0.00 0.00 2.57
2102 3259 8.943085 ACAAATTCTCCTGTAGATCTATCCAAT 58.057 33.333 5.57 0.00 33.05 3.16
2114 3271 3.994392 GCGTCAGAACAAATTCTCCTGTA 59.006 43.478 0.00 0.00 43.69 2.74
2197 3357 9.745880 GAACCGATATACATCTCTTTTTCTGTA 57.254 33.333 0.00 0.00 0.00 2.74
2199 3359 8.879342 AGAACCGATATACATCTCTTTTTCTG 57.121 34.615 0.00 0.00 0.00 3.02
2222 3382 6.668283 ACTAAGGTGGTCAGAAGCTAATAAGA 59.332 38.462 0.00 0.00 0.00 2.10
2223 3383 6.879400 ACTAAGGTGGTCAGAAGCTAATAAG 58.121 40.000 0.00 0.00 0.00 1.73
2261 3422 6.043938 TGGAACTAGGTAAAGAACATCAACCT 59.956 38.462 0.00 0.00 43.00 3.50
2267 3428 6.156429 CCCTACTGGAACTAGGTAAAGAACAT 59.844 42.308 0.00 0.00 35.39 2.71
2272 3433 4.031611 AGCCCTACTGGAACTAGGTAAAG 58.968 47.826 0.00 0.00 35.39 1.85
2289 3450 1.599047 CAATGTCCTGTCGAGCCCT 59.401 57.895 0.00 0.00 0.00 5.19
2291 3452 1.364626 CTGCAATGTCCTGTCGAGCC 61.365 60.000 0.00 0.00 0.00 4.70
2292 3453 0.390340 TCTGCAATGTCCTGTCGAGC 60.390 55.000 0.00 0.00 0.00 5.03
2295 3456 5.490139 AATTATTCTGCAATGTCCTGTCG 57.510 39.130 0.00 0.00 0.00 4.35
2297 3458 7.472334 AAGAAATTATTCTGCAATGTCCTGT 57.528 32.000 0.00 0.00 45.19 4.00
2298 3459 9.674824 GATAAGAAATTATTCTGCAATGTCCTG 57.325 33.333 0.00 0.00 45.19 3.86
2299 3460 8.854117 GGATAAGAAATTATTCTGCAATGTCCT 58.146 33.333 0.00 0.00 45.19 3.85
2300 3461 8.854117 AGGATAAGAAATTATTCTGCAATGTCC 58.146 33.333 0.00 0.00 45.19 4.02
2331 3575 2.297033 GGCAGAGAAGGCACAATTTGAA 59.703 45.455 2.79 0.00 0.00 2.69
2333 3577 1.891150 AGGCAGAGAAGGCACAATTTG 59.109 47.619 0.00 0.00 36.37 2.32
2341 3617 1.003696 ACACCTAAAGGCAGAGAAGGC 59.996 52.381 0.00 0.00 39.32 4.35
2351 3627 2.554564 GGGGAAACTGGACACCTAAAGG 60.555 54.545 0.00 0.00 42.17 3.11
2360 3636 3.933861 ATATCACAGGGGAAACTGGAC 57.066 47.619 0.00 0.00 42.75 4.02
2367 3643 3.326521 AGCACCATATATCACAGGGGAA 58.673 45.455 0.00 0.00 0.00 3.97
2372 3648 7.495606 TGACTGTTAAAGCACCATATATCACAG 59.504 37.037 0.00 0.00 35.18 3.66
2373 3649 7.279981 GTGACTGTTAAAGCACCATATATCACA 59.720 37.037 0.00 0.00 32.46 3.58
2374 3650 7.495934 AGTGACTGTTAAAGCACCATATATCAC 59.504 37.037 0.00 0.00 35.04 3.06
2375 3651 7.564793 AGTGACTGTTAAAGCACCATATATCA 58.435 34.615 0.00 0.00 35.04 2.15
2376 3652 8.438676 AAGTGACTGTTAAAGCACCATATATC 57.561 34.615 0.00 0.00 35.04 1.63
2377 3653 8.807948 AAAGTGACTGTTAAAGCACCATATAT 57.192 30.769 0.00 0.00 35.04 0.86
2379 3655 7.524717 AAAAGTGACTGTTAAAGCACCATAT 57.475 32.000 0.00 0.00 35.04 1.78
2382 3658 6.770785 AGATAAAAGTGACTGTTAAAGCACCA 59.229 34.615 0.00 0.00 35.04 4.17
2383 3659 7.203255 AGATAAAAGTGACTGTTAAAGCACC 57.797 36.000 0.00 0.00 35.04 5.01
2384 3660 7.803659 GGAAGATAAAAGTGACTGTTAAAGCAC 59.196 37.037 0.00 0.00 34.83 4.40
2386 3662 8.100508 AGGAAGATAAAAGTGACTGTTAAAGC 57.899 34.615 0.00 0.00 0.00 3.51
2390 3666 8.190326 TGAGAGGAAGATAAAAGTGACTGTTA 57.810 34.615 0.00 0.00 0.00 2.41
2402 3786 8.464404 CAATTGCAGATTTTGAGAGGAAGATAA 58.536 33.333 0.00 0.00 0.00 1.75
2406 3790 4.863131 GCAATTGCAGATTTTGAGAGGAAG 59.137 41.667 25.36 0.00 41.59 3.46
2423 3807 5.124297 TCTGTCCTGACATTGTATGCAATTG 59.876 40.000 6.26 0.00 42.91 2.32
2429 3813 9.933723 TGAATATATCTGTCCTGACATTGTATG 57.066 33.333 0.00 0.00 41.01 2.39
2602 3986 0.605319 GGTTCATTGCGACTCCACCA 60.605 55.000 0.00 0.00 0.00 4.17
2653 4037 3.013219 GGCAAGGAAACTGAGAGGATTC 58.987 50.000 0.00 0.00 42.68 2.52
2707 4091 4.195416 GTTGAATGGAGAGGATTCTGGTC 58.805 47.826 0.00 0.00 32.53 4.02
2728 4112 1.228063 CTGGTGCAGCTTCACAGGT 60.228 57.895 18.29 0.00 38.66 4.00
2848 4232 2.416747 CTGAAGATTTCACCTCACGCA 58.583 47.619 0.00 0.00 35.46 5.24
2851 4235 5.940470 ACAATACCTGAAGATTTCACCTCAC 59.060 40.000 0.00 0.00 35.46 3.51
2860 4244 9.614792 GTTACCTCATTACAATACCTGAAGATT 57.385 33.333 0.00 0.00 0.00 2.40
2862 4246 7.562135 GGTTACCTCATTACAATACCTGAAGA 58.438 38.462 0.00 0.00 0.00 2.87
2937 4323 5.539955 CCTAGGCAAGGTGGCATAAATAAAT 59.460 40.000 0.00 0.00 46.46 1.40
2941 4327 2.949447 CCTAGGCAAGGTGGCATAAAT 58.051 47.619 0.00 0.00 46.46 1.40
2990 4385 7.441836 TCAGTGAACTACAGCAAATTCTTCTA 58.558 34.615 0.00 0.00 0.00 2.10
3358 4847 5.183713 CCAATGGTCACTGTATGTTGTGATT 59.816 40.000 0.00 0.00 43.75 2.57
3413 4902 2.281484 TGTCGTTTGCCTCCCTGC 60.281 61.111 0.00 0.00 0.00 4.85
3494 4983 6.864560 TTTTGTACATCGTGACTATCTTCG 57.135 37.500 0.00 0.00 0.00 3.79
3550 5039 4.798433 TGCGTTGGAGCAGTGAAT 57.202 50.000 0.00 0.00 42.92 2.57
3606 5095 3.440872 GTGATTCAGAGGACTACACTCGT 59.559 47.826 0.00 0.00 39.90 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.