Multiple sequence alignment - TraesCS7B01G387100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G387100 chr7B 100.000 5985 0 0 1 5985 653022361 653016377 0.000000e+00 11053.0
1 TraesCS7B01G387100 chr7B 89.878 899 66 19 3236 4127 660062065 660062945 0.000000e+00 1133.0
2 TraesCS7B01G387100 chr7D 89.941 4066 227 81 1615 5589 584856881 584852907 0.000000e+00 5075.0
3 TraesCS7B01G387100 chr7D 91.266 1248 62 24 2722 3947 92810146 92808924 0.000000e+00 1657.0
4 TraesCS7B01G387100 chr7D 82.787 1435 93 66 101 1445 584858399 584857029 0.000000e+00 1140.0
5 TraesCS7B01G387100 chr7D 91.339 381 22 7 5606 5985 584852799 584852429 1.490000e-140 510.0
6 TraesCS7B01G387100 chr7D 89.634 328 17 6 1122 1445 92811399 92811085 9.340000e-108 401.0
7 TraesCS7B01G387100 chr7D 89.247 93 6 3 1442 1534 92810961 92810873 4.900000e-21 113.0
8 TraesCS7B01G387100 chr7D 89.247 93 6 3 1442 1534 584857000 584856912 4.900000e-21 113.0
9 TraesCS7B01G387100 chr7D 93.750 48 1 2 3970 4016 92808925 92808879 2.990000e-08 71.3
10 TraesCS7B01G387100 chr7D 97.368 38 1 0 1062 1099 92811432 92811395 1.390000e-06 65.8
11 TraesCS7B01G387100 chr7A 89.363 2510 136 68 2572 5004 675229669 675232124 0.000000e+00 3035.0
12 TraesCS7B01G387100 chr7A 88.663 1032 91 17 1615 2634 675228634 675229651 0.000000e+00 1234.0
13 TraesCS7B01G387100 chr7A 90.487 904 62 17 3234 4130 630247594 630246708 0.000000e+00 1171.0
14 TraesCS7B01G387100 chr7A 88.803 902 81 16 3234 4130 305700483 305699597 0.000000e+00 1088.0
15 TraesCS7B01G387100 chr7A 93.548 434 20 4 5156 5589 675232242 675232667 1.820000e-179 640.0
16 TraesCS7B01G387100 chr7A 92.760 442 15 6 1013 1445 675227966 675228399 1.830000e-174 623.0
17 TraesCS7B01G387100 chr7A 92.424 396 22 5 5591 5985 675232764 675233152 5.240000e-155 558.0
18 TraesCS7B01G387100 chr7A 84.229 279 22 13 101 373 675223265 675223527 9.960000e-63 252.0
19 TraesCS7B01G387100 chr6A 89.556 900 77 13 3234 4130 546621492 546620607 0.000000e+00 1125.0
20 TraesCS7B01G387100 chr6A 90.727 399 36 1 3305 3703 376681316 376680919 1.140000e-146 531.0
21 TraesCS7B01G387100 chr6A 89.418 378 30 5 1072 1445 376682730 376682359 9.080000e-128 468.0
22 TraesCS7B01G387100 chr6A 89.011 91 6 3 1444 1534 376682233 376682147 6.340000e-20 110.0
23 TraesCS7B01G387100 chr2D 90.398 729 42 17 2986 3703 87982324 87981613 0.000000e+00 933.0
24 TraesCS7B01G387100 chr2D 92.857 378 17 5 1072 1445 87983356 87982985 1.900000e-149 540.0
25 TraesCS7B01G387100 chr2D 90.323 93 5 2 1442 1534 87982861 87982773 1.050000e-22 119.0
26 TraesCS7B01G387100 chr6B 90.440 659 34 13 2909 3555 173904643 173905284 0.000000e+00 841.0
27 TraesCS7B01G387100 chr1B 89.628 376 28 5 1074 1445 621200633 621201001 9.080000e-128 468.0
28 TraesCS7B01G387100 chr1B 95.714 70 3 0 1442 1511 621201125 621201194 4.900000e-21 113.0
29 TraesCS7B01G387100 chr2B 79.210 481 85 12 2744 3215 638971189 638970715 2.690000e-83 320.0
30 TraesCS7B01G387100 chr2B 80.645 248 44 4 2975 3220 89555882 89556127 7.920000e-44 189.0
31 TraesCS7B01G387100 chr2A 79.002 481 83 16 2744 3215 679512407 679511936 4.500000e-81 313.0
32 TraesCS7B01G387100 chr2A 81.452 248 42 4 2975 3220 58003168 58003413 3.660000e-47 200.0
33 TraesCS7B01G387100 chr2A 84.677 124 7 6 553 676 97848607 97848496 4.900000e-21 113.0
34 TraesCS7B01G387100 chr5B 97.143 70 2 0 607 676 678674658 678674589 1.050000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G387100 chr7B 653016377 653022361 5984 True 11053.000000 11053 100.000000 1 5985 1 chr7B.!!$R1 5984
1 TraesCS7B01G387100 chr7B 660062065 660062945 880 False 1133.000000 1133 89.878000 3236 4127 1 chr7B.!!$F1 891
2 TraesCS7B01G387100 chr7D 584852429 584858399 5970 True 1709.500000 5075 88.328500 101 5985 4 chr7D.!!$R2 5884
3 TraesCS7B01G387100 chr7D 92808879 92811432 2553 True 461.620000 1657 92.253000 1062 4016 5 chr7D.!!$R1 2954
4 TraesCS7B01G387100 chr7A 675227966 675233152 5186 False 1218.000000 3035 91.351600 1013 5985 5 chr7A.!!$F2 4972
5 TraesCS7B01G387100 chr7A 630246708 630247594 886 True 1171.000000 1171 90.487000 3234 4130 1 chr7A.!!$R2 896
6 TraesCS7B01G387100 chr7A 305699597 305700483 886 True 1088.000000 1088 88.803000 3234 4130 1 chr7A.!!$R1 896
7 TraesCS7B01G387100 chr6A 546620607 546621492 885 True 1125.000000 1125 89.556000 3234 4130 1 chr6A.!!$R1 896
8 TraesCS7B01G387100 chr6A 376680919 376682730 1811 True 369.666667 531 89.718667 1072 3703 3 chr6A.!!$R2 2631
9 TraesCS7B01G387100 chr2D 87981613 87983356 1743 True 530.666667 933 91.192667 1072 3703 3 chr2D.!!$R1 2631
10 TraesCS7B01G387100 chr6B 173904643 173905284 641 False 841.000000 841 90.440000 2909 3555 1 chr6B.!!$F1 646
11 TraesCS7B01G387100 chr1B 621200633 621201194 561 False 290.500000 468 92.671000 1074 1511 2 chr1B.!!$F1 437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 548 0.035439 GCTTTCCTGACCCGATTCCA 60.035 55.0 0.00 0.00 0.00 3.53 F
604 635 0.253044 ATACATCCGCCAACAGCAGT 59.747 50.0 0.00 0.00 44.04 4.40 F
605 636 0.391130 TACATCCGCCAACAGCAGTC 60.391 55.0 0.00 0.00 44.04 3.51 F
986 1059 0.529337 CGCAGCTCCATTCGACTGAT 60.529 55.0 4.04 0.00 31.67 2.90 F
1323 1400 0.531090 GAGGTACACACGCCACACAA 60.531 55.0 0.00 0.00 0.00 3.33 F
3216 3611 0.321919 AGTCGCAGTGCATCAACCAT 60.322 50.0 16.83 0.00 0.00 3.55 F
3257 3670 0.249398 TTGCCGGTCTAGGAAGCTTC 59.751 55.0 18.54 18.54 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 2148 0.034896 ATCGTCGGCAAGGTCAAACT 59.965 50.0 0.00 0.00 0.00 2.66 R
1910 2155 0.307760 GCCATAAATCGTCGGCAAGG 59.692 55.0 0.00 0.00 44.25 3.61 R
1955 2200 0.894835 TCAATAGCACGGCTCTGACA 59.105 50.0 1.46 0.00 40.44 3.58 R
2717 3104 0.746063 TGGGACAGTACAAACGTCGT 59.254 50.0 0.00 0.00 33.06 4.34 R
3257 3670 0.179000 GCCATGACAGGTACCAGAGG 59.821 60.0 15.94 9.63 0.00 3.69 R
4163 4646 0.036010 AGGGGAGAAACATGAGCACG 60.036 55.0 0.00 0.00 0.00 5.34 R
5149 5678 0.322997 CCCGGTATGGTTGAAGCCAA 60.323 55.0 0.00 0.00 42.48 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.868757 TGATAGAACAAGACCAGGTCG 57.131 47.619 14.32 3.38 37.67 4.79
24 25 3.162666 TGATAGAACAAGACCAGGTCGT 58.837 45.455 14.32 8.23 37.67 4.34
25 26 3.056821 TGATAGAACAAGACCAGGTCGTG 60.057 47.826 28.35 28.35 44.94 4.35
41 42 3.312718 TGGCCCACCATTGCAAGC 61.313 61.111 4.94 0.89 42.67 4.01
42 43 3.312718 GGCCCACCATTGCAAGCA 61.313 61.111 4.94 0.00 35.26 3.91
43 44 2.263540 GCCCACCATTGCAAGCAG 59.736 61.111 4.94 0.00 0.00 4.24
44 45 2.263540 CCCACCATTGCAAGCAGC 59.736 61.111 4.94 0.00 45.96 5.25
45 46 2.263540 CCACCATTGCAAGCAGCC 59.736 61.111 4.94 0.00 44.83 4.85
46 47 2.575893 CCACCATTGCAAGCAGCCA 61.576 57.895 4.94 0.00 44.83 4.75
47 48 1.368209 CACCATTGCAAGCAGCCAA 59.632 52.632 4.94 0.00 44.83 4.52
48 49 0.669318 CACCATTGCAAGCAGCCAAG 60.669 55.000 4.94 0.00 44.83 3.61
49 50 1.740296 CCATTGCAAGCAGCCAAGC 60.740 57.895 4.94 0.00 44.83 4.01
50 51 1.005512 CATTGCAAGCAGCCAAGCA 60.006 52.632 4.94 0.20 44.83 3.91
51 52 0.391130 CATTGCAAGCAGCCAAGCAT 60.391 50.000 4.94 0.00 44.83 3.79
52 53 0.323629 ATTGCAAGCAGCCAAGCATT 59.676 45.000 4.94 0.00 44.83 3.56
66 67 1.999648 AGCATTGAAAAGTGGAGGCA 58.000 45.000 0.00 0.00 0.00 4.75
67 68 2.318908 AGCATTGAAAAGTGGAGGCAA 58.681 42.857 0.00 0.00 0.00 4.52
68 69 2.298163 AGCATTGAAAAGTGGAGGCAAG 59.702 45.455 0.00 0.00 0.00 4.01
69 70 2.611224 GCATTGAAAAGTGGAGGCAAGG 60.611 50.000 0.00 0.00 0.00 3.61
70 71 1.039856 TTGAAAAGTGGAGGCAAGGC 58.960 50.000 0.00 0.00 0.00 4.35
71 72 0.106268 TGAAAAGTGGAGGCAAGGCA 60.106 50.000 0.00 0.00 0.00 4.75
72 73 1.260544 GAAAAGTGGAGGCAAGGCAT 58.739 50.000 0.00 0.00 0.00 4.40
73 74 0.971386 AAAAGTGGAGGCAAGGCATG 59.029 50.000 0.00 0.00 0.00 4.06
74 75 0.901580 AAAGTGGAGGCAAGGCATGG 60.902 55.000 0.00 0.00 0.00 3.66
125 126 0.968405 GGCATGGCCTTGAGAACAAA 59.032 50.000 22.21 0.00 46.69 2.83
128 129 3.557686 GGCATGGCCTTGAGAACAAAAAT 60.558 43.478 22.21 0.00 46.69 1.82
129 130 4.067192 GCATGGCCTTGAGAACAAAAATT 58.933 39.130 22.21 0.00 35.49 1.82
131 132 5.876460 GCATGGCCTTGAGAACAAAAATTAT 59.124 36.000 22.21 0.00 35.49 1.28
133 134 6.418057 TGGCCTTGAGAACAAAAATTATGT 57.582 33.333 3.32 0.00 35.49 2.29
134 135 7.531857 TGGCCTTGAGAACAAAAATTATGTA 57.468 32.000 3.32 0.00 35.49 2.29
135 136 7.375053 TGGCCTTGAGAACAAAAATTATGTAC 58.625 34.615 3.32 0.00 35.49 2.90
136 137 7.232534 TGGCCTTGAGAACAAAAATTATGTACT 59.767 33.333 3.32 0.00 35.49 2.73
170 174 1.427020 CTTTAAGCAGAGGCAGCGC 59.573 57.895 0.00 0.00 44.61 5.92
241 245 4.961511 GCGCCTCACACCGTCACA 62.962 66.667 0.00 0.00 0.00 3.58
284 288 3.345808 GCGACTTTGCTGTGCCGA 61.346 61.111 0.00 0.00 0.00 5.54
321 325 2.863740 TGATGTACCGTACCGTACTACG 59.136 50.000 20.36 7.51 39.51 3.51
324 328 4.049546 TGTACCGTACCGTACTACGTAT 57.950 45.455 20.36 4.66 40.58 3.06
361 365 2.760385 ACCCGCAGCCTACTCCTC 60.760 66.667 0.00 0.00 0.00 3.71
364 368 2.196925 CCGCAGCCTACTCCTCGAT 61.197 63.158 0.00 0.00 0.00 3.59
368 372 0.589223 CAGCCTACTCCTCGATCGTC 59.411 60.000 15.94 0.00 0.00 4.20
387 391 1.000993 TGAGGTCCAGAGGAGGCTC 59.999 63.158 5.78 5.78 29.39 4.70
388 392 1.000993 GAGGTCCAGAGGAGGCTCA 59.999 63.158 17.69 0.00 29.39 4.26
393 397 2.125753 CAGAGGAGGCTCACACGC 60.126 66.667 17.69 0.61 0.00 5.34
394 398 2.601666 AGAGGAGGCTCACACGCA 60.602 61.111 17.69 0.00 0.00 5.24
396 400 3.941657 GAGGAGGCTCACACGCACC 62.942 68.421 17.69 0.00 0.00 5.01
416 421 0.821711 CCGGCCAAAACCAAGACTCA 60.822 55.000 2.24 0.00 0.00 3.41
425 430 1.302511 CCAAGACTCAACCGTGGGG 60.303 63.158 0.00 0.00 40.11 4.96
435 440 2.361357 CCGTGGGGTCTCGAGACT 60.361 66.667 36.98 0.00 44.20 3.24
436 441 2.701780 CCGTGGGGTCTCGAGACTG 61.702 68.421 36.98 23.36 44.20 3.51
437 442 1.674651 CGTGGGGTCTCGAGACTGA 60.675 63.158 36.98 22.03 44.20 3.41
438 443 1.884444 GTGGGGTCTCGAGACTGAC 59.116 63.158 36.98 27.26 44.20 3.51
441 446 4.298009 GGTCTCGAGACTGACCGA 57.702 61.111 36.98 4.03 42.51 4.69
442 447 1.795507 GGTCTCGAGACTGACCGAC 59.204 63.158 36.98 19.79 42.51 4.79
443 448 0.674269 GGTCTCGAGACTGACCGACT 60.674 60.000 36.98 0.00 42.51 4.18
444 449 0.722848 GTCTCGAGACTGACCGACTC 59.277 60.000 33.28 7.41 41.65 3.36
445 450 0.320697 TCTCGAGACTGACCGACTCA 59.679 55.000 12.08 0.00 34.67 3.41
446 451 1.157585 CTCGAGACTGACCGACTCAA 58.842 55.000 6.58 0.00 34.67 3.02
447 452 0.873054 TCGAGACTGACCGACTCAAC 59.127 55.000 0.00 0.00 34.67 3.18
454 459 0.311790 TGACCGACTCAACACGTACC 59.688 55.000 0.00 0.00 0.00 3.34
456 461 1.080298 CCGACTCAACACGTACCCC 60.080 63.158 0.00 0.00 0.00 4.95
466 471 0.459585 CACGTACCCCAATCTCACGG 60.460 60.000 0.00 0.00 36.95 4.94
469 474 0.179081 GTACCCCAATCTCACGGCTC 60.179 60.000 0.00 0.00 0.00 4.70
471 476 2.669133 CCCCAATCTCACGGCTCCA 61.669 63.158 0.00 0.00 0.00 3.86
472 477 1.299648 CCCAATCTCACGGCTCCAA 59.700 57.895 0.00 0.00 0.00 3.53
473 478 0.745845 CCCAATCTCACGGCTCCAAG 60.746 60.000 0.00 0.00 0.00 3.61
474 479 1.372087 CCAATCTCACGGCTCCAAGC 61.372 60.000 0.00 0.00 41.46 4.01
491 505 1.343069 AGCCCAAAAGTCTCGAGTCT 58.657 50.000 13.13 9.61 0.00 3.24
493 507 1.000955 GCCCAAAAGTCTCGAGTCTCA 59.999 52.381 13.13 0.00 0.00 3.27
499 513 1.448985 AGTCTCGAGTCTCACTCTGC 58.551 55.000 13.13 0.00 42.92 4.26
509 523 1.620819 TCTCACTCTGCTTTCCTGACC 59.379 52.381 0.00 0.00 0.00 4.02
517 548 0.035439 GCTTTCCTGACCCGATTCCA 60.035 55.000 0.00 0.00 0.00 3.53
527 558 5.365025 CCTGACCCGATTCCATCTCATATAT 59.635 44.000 0.00 0.00 0.00 0.86
531 562 7.824289 TGACCCGATTCCATCTCATATATTTTC 59.176 37.037 0.00 0.00 0.00 2.29
533 564 8.386264 ACCCGATTCCATCTCATATATTTTCTT 58.614 33.333 0.00 0.00 0.00 2.52
535 566 8.887717 CCGATTCCATCTCATATATTTTCTTCC 58.112 37.037 0.00 0.00 0.00 3.46
536 567 8.887717 CGATTCCATCTCATATATTTTCTTCCC 58.112 37.037 0.00 0.00 0.00 3.97
537 568 8.798859 ATTCCATCTCATATATTTTCTTCCCG 57.201 34.615 0.00 0.00 0.00 5.14
538 569 6.711277 TCCATCTCATATATTTTCTTCCCGG 58.289 40.000 0.00 0.00 0.00 5.73
561 592 0.890996 AGGAAAAAGGTGCGCCTCTG 60.891 55.000 21.49 0.00 46.33 3.35
567 598 2.359230 GGTGCGCCTCTGCTTTCT 60.359 61.111 9.68 0.00 35.36 2.52
576 607 1.478510 CCTCTGCTTTCTCGCTCCTAA 59.521 52.381 0.00 0.00 0.00 2.69
583 614 1.035932 TTCTCGCTCCTAACCCCGAG 61.036 60.000 2.78 2.78 46.11 4.63
587 618 1.421268 TCGCTCCTAACCCCGAGTATA 59.579 52.381 0.00 0.00 0.00 1.47
597 628 0.677288 CCCGAGTATACATCCGCCAA 59.323 55.000 5.50 0.00 0.00 4.52
604 635 0.253044 ATACATCCGCCAACAGCAGT 59.747 50.000 0.00 0.00 44.04 4.40
605 636 0.391130 TACATCCGCCAACAGCAGTC 60.391 55.000 0.00 0.00 44.04 3.51
606 637 2.045926 ATCCGCCAACAGCAGTCC 60.046 61.111 0.00 0.00 44.04 3.85
607 638 2.894257 ATCCGCCAACAGCAGTCCA 61.894 57.895 0.00 0.00 44.04 4.02
608 639 2.809861 ATCCGCCAACAGCAGTCCAG 62.810 60.000 0.00 0.00 44.04 3.86
610 641 2.595463 GCCAACAGCAGTCCAGCA 60.595 61.111 0.00 0.00 42.97 4.41
611 642 2.623915 GCCAACAGCAGTCCAGCAG 61.624 63.158 0.00 0.00 42.97 4.24
612 643 2.623915 CCAACAGCAGTCCAGCAGC 61.624 63.158 0.00 0.00 36.85 5.25
613 644 1.600076 CAACAGCAGTCCAGCAGCT 60.600 57.895 0.00 0.00 40.78 4.24
643 674 2.740055 GCTCCCACGCACACAGAG 60.740 66.667 0.00 0.00 0.00 3.35
656 695 1.683917 ACACAGAGAGACAGACACACC 59.316 52.381 0.00 0.00 0.00 4.16
657 696 0.955178 ACAGAGAGACAGACACACCG 59.045 55.000 0.00 0.00 0.00 4.94
658 697 0.955178 CAGAGAGACAGACACACCGT 59.045 55.000 0.00 0.00 0.00 4.83
668 707 2.989824 CACACCGTCCTCCTCCGT 60.990 66.667 0.00 0.00 0.00 4.69
671 710 3.975591 ACCGTCCTCCTCCGTCCA 61.976 66.667 0.00 0.00 0.00 4.02
674 713 3.075641 GTCCTCCTCCGTCCACCC 61.076 72.222 0.00 0.00 0.00 4.61
675 714 4.393778 TCCTCCTCCGTCCACCCC 62.394 72.222 0.00 0.00 0.00 4.95
700 742 3.855853 GCCTTCCCGCCTCTCCTC 61.856 72.222 0.00 0.00 0.00 3.71
701 743 3.157949 CCTTCCCGCCTCTCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
702 744 3.157949 CTTCCCGCCTCTCCTCCC 61.158 72.222 0.00 0.00 0.00 4.30
728 770 2.163818 TCCCTTGCACGTCACTTAAG 57.836 50.000 0.00 0.00 0.00 1.85
729 771 1.689813 TCCCTTGCACGTCACTTAAGA 59.310 47.619 10.09 0.00 0.00 2.10
731 773 2.548067 CCCTTGCACGTCACTTAAGACT 60.548 50.000 10.09 0.00 36.38 3.24
732 774 3.131396 CCTTGCACGTCACTTAAGACTT 58.869 45.455 10.09 0.00 36.38 3.01
733 775 4.304110 CCTTGCACGTCACTTAAGACTTA 58.696 43.478 10.09 0.00 36.38 2.24
734 776 4.748102 CCTTGCACGTCACTTAAGACTTAA 59.252 41.667 10.09 7.42 36.38 1.85
735 777 5.333111 CCTTGCACGTCACTTAAGACTTAAC 60.333 44.000 10.09 0.00 36.38 2.01
736 778 4.053295 TGCACGTCACTTAAGACTTAACC 58.947 43.478 10.09 0.00 36.38 2.85
737 779 3.431233 GCACGTCACTTAAGACTTAACCC 59.569 47.826 10.09 0.00 36.38 4.11
738 780 4.624015 CACGTCACTTAAGACTTAACCCA 58.376 43.478 10.09 0.00 36.38 4.51
742 784 5.061179 GTCACTTAAGACTTAACCCAAGCA 58.939 41.667 10.09 0.00 37.83 3.91
744 786 5.529800 TCACTTAAGACTTAACCCAAGCAAC 59.470 40.000 10.09 0.00 37.83 4.17
746 788 3.306472 AAGACTTAACCCAAGCAACCA 57.694 42.857 0.00 0.00 37.83 3.67
771 830 3.136750 CTCCATCAGCCTCCTCCG 58.863 66.667 0.00 0.00 0.00 4.63
772 831 3.157252 TCCATCAGCCTCCTCCGC 61.157 66.667 0.00 0.00 0.00 5.54
775 834 3.474570 ATCAGCCTCCTCCGCACC 61.475 66.667 0.00 0.00 0.00 5.01
798 857 1.140852 AGCAGTACACTCCAAGCAACA 59.859 47.619 0.00 0.00 0.00 3.33
891 958 2.095212 GGCAAGAACCGAACCATTTCTC 60.095 50.000 0.00 0.00 0.00 2.87
893 960 3.120165 GCAAGAACCGAACCATTTCTCTC 60.120 47.826 0.00 0.00 0.00 3.20
898 965 1.471676 CCGAACCATTTCTCTCCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
934 1007 2.357517 CGCTCTCACCAAACGCCT 60.358 61.111 0.00 0.00 0.00 5.52
940 1013 3.423154 CACCAAACGCCTCCTCGC 61.423 66.667 0.00 0.00 0.00 5.03
943 1016 4.697756 CAAACGCCTCCTCGCCCA 62.698 66.667 0.00 0.00 0.00 5.36
949 1022 1.077429 GCCTCCTCGCCCAAATTCT 60.077 57.895 0.00 0.00 0.00 2.40
953 1026 1.453928 CCTCGCCCAAATTCTCCCC 60.454 63.158 0.00 0.00 0.00 4.81
970 1043 3.443925 CCTCTCTCGACAGCCGCA 61.444 66.667 0.00 0.00 38.37 5.69
982 1055 3.567797 GCCGCAGCTCCATTCGAC 61.568 66.667 0.00 0.00 35.50 4.20
983 1056 2.185350 CCGCAGCTCCATTCGACT 59.815 61.111 0.00 0.00 0.00 4.18
984 1057 2.169789 CCGCAGCTCCATTCGACTG 61.170 63.158 0.00 0.00 0.00 3.51
985 1058 1.153765 CGCAGCTCCATTCGACTGA 60.154 57.895 4.04 0.00 31.67 3.41
986 1059 0.529337 CGCAGCTCCATTCGACTGAT 60.529 55.000 4.04 0.00 31.67 2.90
987 1060 1.216122 GCAGCTCCATTCGACTGATC 58.784 55.000 4.04 0.00 31.67 2.92
1322 1399 1.068417 GAGGTACACACGCCACACA 59.932 57.895 0.00 0.00 0.00 3.72
1323 1400 0.531090 GAGGTACACACGCCACACAA 60.531 55.000 0.00 0.00 0.00 3.33
1353 1434 6.568081 GCTCAGCAATTATCTTCAGCCATTAG 60.568 42.308 0.00 0.00 0.00 1.73
1383 1473 7.136772 GCTGATTTGATCGATTGATTCATTCA 58.863 34.615 0.00 0.00 34.09 2.57
1461 1694 9.892130 AGCTTGAATTTAGTGCTAGTAGTATTT 57.108 29.630 0.00 0.00 31.71 1.40
1513 1746 9.605275 TCTCCAACTTAGATATGAAAGATTGTG 57.395 33.333 1.57 0.00 0.00 3.33
1516 1749 8.616076 CCAACTTAGATATGAAAGATTGTGACC 58.384 37.037 1.57 0.00 0.00 4.02
1527 1760 5.859205 AAGATTGTGACCAAAGCTTCTTT 57.141 34.783 0.00 0.00 33.44 2.52
1528 1761 5.859205 AGATTGTGACCAAAGCTTCTTTT 57.141 34.783 0.00 0.00 33.44 2.27
1529 1762 6.959639 AGATTGTGACCAAAGCTTCTTTTA 57.040 33.333 0.00 0.00 33.44 1.52
1530 1763 7.346751 AGATTGTGACCAAAGCTTCTTTTAA 57.653 32.000 0.00 0.00 33.44 1.52
1532 1765 8.084684 AGATTGTGACCAAAGCTTCTTTTAATC 58.915 33.333 0.00 5.26 33.44 1.75
1533 1766 6.959639 TGTGACCAAAGCTTCTTTTAATCT 57.040 33.333 0.00 0.00 0.00 2.40
1534 1767 7.346751 TGTGACCAAAGCTTCTTTTAATCTT 57.653 32.000 0.00 0.00 0.00 2.40
1535 1768 7.781056 TGTGACCAAAGCTTCTTTTAATCTTT 58.219 30.769 0.00 0.00 0.00 2.52
1537 1770 9.098355 GTGACCAAAGCTTCTTTTAATCTTTTT 57.902 29.630 0.00 0.00 0.00 1.94
1566 1799 9.449719 TTCAAGAAACTGAACTTCTTTTAGTCT 57.550 29.630 0.00 0.00 40.37 3.24
1567 1800 8.883731 TCAAGAAACTGAACTTCTTTTAGTCTG 58.116 33.333 0.00 0.00 40.37 3.51
1568 1801 7.252965 AGAAACTGAACTTCTTTTAGTCTGC 57.747 36.000 0.00 0.00 32.96 4.26
1569 1802 5.659048 AACTGAACTTCTTTTAGTCTGCG 57.341 39.130 0.00 0.00 32.96 5.18
1570 1803 4.058817 ACTGAACTTCTTTTAGTCTGCGG 58.941 43.478 0.00 0.00 27.75 5.69
1571 1804 4.058817 CTGAACTTCTTTTAGTCTGCGGT 58.941 43.478 0.00 0.00 0.00 5.68
1572 1805 3.807622 TGAACTTCTTTTAGTCTGCGGTG 59.192 43.478 0.00 0.00 0.00 4.94
1600 1833 4.993705 AGGGACTTTACAATTCTGGACA 57.006 40.909 0.00 0.00 27.25 4.02
1601 1834 4.911390 AGGGACTTTACAATTCTGGACAG 58.089 43.478 0.00 0.00 27.25 3.51
1602 1835 3.440522 GGGACTTTACAATTCTGGACAGC 59.559 47.826 0.00 0.00 0.00 4.40
1603 1836 4.327680 GGACTTTACAATTCTGGACAGCT 58.672 43.478 0.00 0.00 0.00 4.24
1604 1837 5.488341 GGACTTTACAATTCTGGACAGCTA 58.512 41.667 0.00 0.00 0.00 3.32
1605 1838 5.582665 GGACTTTACAATTCTGGACAGCTAG 59.417 44.000 0.00 0.00 0.00 3.42
1606 1839 6.115448 ACTTTACAATTCTGGACAGCTAGT 57.885 37.500 0.00 0.00 0.00 2.57
1607 1840 5.934625 ACTTTACAATTCTGGACAGCTAGTG 59.065 40.000 0.00 0.00 0.00 2.74
1608 1841 3.340814 ACAATTCTGGACAGCTAGTGG 57.659 47.619 0.00 0.00 0.00 4.00
1609 1842 2.906389 ACAATTCTGGACAGCTAGTGGA 59.094 45.455 0.00 0.00 0.00 4.02
1610 1843 3.521126 ACAATTCTGGACAGCTAGTGGAT 59.479 43.478 0.00 0.00 0.00 3.41
1611 1844 4.716784 ACAATTCTGGACAGCTAGTGGATA 59.283 41.667 0.00 0.00 0.00 2.59
1612 1845 5.163364 ACAATTCTGGACAGCTAGTGGATAG 60.163 44.000 0.00 0.00 34.31 2.08
1613 1846 3.671740 TCTGGACAGCTAGTGGATAGT 57.328 47.619 0.00 0.00 33.65 2.12
1626 1859 7.665974 AGCTAGTGGATAGTATAAATTTTGCCC 59.334 37.037 0.00 0.00 33.65 5.36
1627 1860 6.877611 AGTGGATAGTATAAATTTTGCCCG 57.122 37.500 0.00 0.00 0.00 6.13
1643 1876 1.026718 CCCGGTTCCATTCAGTCAGC 61.027 60.000 0.00 0.00 0.00 4.26
1678 1915 4.710375 AGGTAGAATCAGGCGACTTTTCTA 59.290 41.667 13.93 13.93 39.68 2.10
1692 1929 6.673316 GCGACTTTTCTAGGTTGAATGTCATC 60.673 42.308 0.00 0.00 33.56 2.92
1718 1955 4.990426 AGTGGCCAAAAATTCGAATTCAAG 59.010 37.500 22.93 14.65 0.00 3.02
1719 1956 4.749598 GTGGCCAAAAATTCGAATTCAAGT 59.250 37.500 22.93 5.43 0.00 3.16
1758 1997 5.959652 AAGTACCAAATTCAAACGCAAAC 57.040 34.783 0.00 0.00 0.00 2.93
1793 2035 3.508762 CGTGGAGGTACATACACACTTC 58.491 50.000 21.90 0.00 33.62 3.01
1808 2050 4.118410 CACACTTCTGATGATGCTAGTCC 58.882 47.826 0.00 0.00 0.00 3.85
1809 2051 3.181482 ACACTTCTGATGATGCTAGTCCG 60.181 47.826 0.00 0.00 0.00 4.79
1825 2067 5.526111 GCTAGTCCGTGATTTGCCTTATTAA 59.474 40.000 0.00 0.00 0.00 1.40
1844 2089 3.824414 AACGGTTTTGGCTAATTCTCG 57.176 42.857 0.00 0.00 0.00 4.04
1852 2097 3.526931 TGGCTAATTCTCGTGAGGAAG 57.473 47.619 0.00 0.00 0.00 3.46
1864 2109 3.118555 TCGTGAGGAAGGAACTGTTGAAA 60.119 43.478 0.00 0.00 40.86 2.69
1876 2121 7.205297 AGGAACTGTTGAAATTCATGTCAAAG 58.795 34.615 0.00 0.00 37.18 2.77
1888 2133 8.955061 AATTCATGTCAAAGTGAAATTACTCG 57.045 30.769 0.00 0.00 37.82 4.18
1894 2139 7.406553 TGTCAAAGTGAAATTACTCGAGTTTG 58.593 34.615 25.44 17.60 0.00 2.93
1898 2143 8.895845 CAAAGTGAAATTACTCGAGTTTGATTG 58.104 33.333 25.44 12.32 0.00 2.67
1899 2144 6.603095 AGTGAAATTACTCGAGTTTGATTGC 58.397 36.000 25.44 18.80 0.00 3.56
1900 2145 5.504755 GTGAAATTACTCGAGTTTGATTGCG 59.495 40.000 25.44 0.00 0.00 4.85
1901 2146 3.658351 ATTACTCGAGTTTGATTGCGC 57.342 42.857 25.44 0.00 0.00 6.09
1902 2147 2.073117 TACTCGAGTTTGATTGCGCA 57.927 45.000 25.44 5.66 0.00 6.09
1903 2148 1.225855 ACTCGAGTTTGATTGCGCAA 58.774 45.000 27.24 27.24 0.00 4.85
1904 2149 1.195448 ACTCGAGTTTGATTGCGCAAG 59.805 47.619 28.62 12.74 43.44 4.01
1905 2150 1.195448 CTCGAGTTTGATTGCGCAAGT 59.805 47.619 28.62 16.12 41.68 3.16
1906 2151 1.601903 TCGAGTTTGATTGCGCAAGTT 59.398 42.857 28.62 12.98 41.68 2.66
1908 2153 2.151736 CGAGTTTGATTGCGCAAGTTTG 59.848 45.455 28.62 9.54 41.68 2.93
1909 2154 3.371168 GAGTTTGATTGCGCAAGTTTGA 58.629 40.909 28.62 10.19 41.68 2.69
1910 2155 3.115554 AGTTTGATTGCGCAAGTTTGAC 58.884 40.909 28.62 20.37 41.68 3.18
1911 2156 2.132740 TTGATTGCGCAAGTTTGACC 57.867 45.000 28.62 10.98 41.68 4.02
1919 2164 3.845625 CAAGTTTGACCTTGCCGAC 57.154 52.632 0.00 0.00 35.80 4.79
1937 2182 4.219033 CCGACGATTTATGGCTATTTTGC 58.781 43.478 0.00 0.00 0.00 3.68
1944 2189 6.086765 CGATTTATGGCTATTTTGCGTCAATC 59.913 38.462 0.00 0.00 0.00 2.67
1955 2200 5.957842 TTTGCGTCAATCTCTTGGTAAAT 57.042 34.783 0.00 0.00 32.95 1.40
1964 2209 4.207891 TCTCTTGGTAAATGTCAGAGCC 57.792 45.455 0.00 0.00 0.00 4.70
1965 2210 2.932614 CTCTTGGTAAATGTCAGAGCCG 59.067 50.000 0.00 0.00 0.00 5.52
2008 2253 7.995488 AGTCAATGTGCTAATCTTAAATAGGCT 59.005 33.333 0.00 0.00 0.00 4.58
2038 2283 5.163754 GCCAATTACTTTAGTGCCACTAGTG 60.164 44.000 16.34 16.34 31.47 2.74
2098 2349 9.788889 TCCAACTTAGATATACGAGAGACATTA 57.211 33.333 0.00 0.00 0.00 1.90
2141 2392 1.665137 GGTAGGGGAAGGGAGTTCAA 58.335 55.000 0.00 0.00 36.82 2.69
2143 2394 2.290768 GGTAGGGGAAGGGAGTTCAAAC 60.291 54.545 0.00 0.00 36.82 2.93
2183 2436 6.317391 GGTCATTGAAAAGGTAGAATCAGGAG 59.683 42.308 0.00 0.00 0.00 3.69
2184 2437 6.317391 GTCATTGAAAAGGTAGAATCAGGAGG 59.683 42.308 0.00 0.00 0.00 4.30
2196 2449 3.532641 ATCAGGAGGCTTTTCTTGGTT 57.467 42.857 0.00 0.00 0.00 3.67
2202 2457 4.767409 AGGAGGCTTTTCTTGGTTGAATAC 59.233 41.667 0.00 0.00 0.00 1.89
2236 2491 4.493547 TCAAAAATTTGAATAGCTGGCGG 58.506 39.130 6.13 0.00 43.62 6.13
2290 2547 4.318974 GCAAATCTGTGGAAACATGCAAAC 60.319 41.667 0.00 0.00 46.14 2.93
2297 2554 5.724328 TGTGGAAACATGCAAACTAAAACA 58.276 33.333 0.00 0.00 46.14 2.83
2395 2682 2.103094 CCTGACCTGACAGTTCTGAACA 59.897 50.000 21.50 1.08 36.30 3.18
2430 2717 5.349061 TGAGTAGATTCAGACATGCATGT 57.651 39.130 31.82 31.82 45.16 3.21
2470 2757 0.791422 CCATTGCATTTGTTGGTGCG 59.209 50.000 0.00 0.00 44.11 5.34
2493 2781 5.421277 GCATTTCATTTGATCCAACCATCA 58.579 37.500 0.00 0.00 0.00 3.07
2534 2822 4.141251 ACACTTCCACTACCAACTCCAATT 60.141 41.667 0.00 0.00 0.00 2.32
2615 2996 5.245301 TCTGTCTCGTCCTTCCTTGATTAAA 59.755 40.000 0.00 0.00 0.00 1.52
2616 2997 5.235516 TGTCTCGTCCTTCCTTGATTAAAC 58.764 41.667 0.00 0.00 0.00 2.01
2617 2998 4.630505 GTCTCGTCCTTCCTTGATTAAACC 59.369 45.833 0.00 0.00 0.00 3.27
2635 3016 5.372343 AAACCCCAAGCAAAGAAAGAAAT 57.628 34.783 0.00 0.00 0.00 2.17
2646 3027 7.154656 AGCAAAGAAAGAAATAATTCCACACC 58.845 34.615 0.00 0.00 36.12 4.16
2650 3031 8.477419 AAGAAAGAAATAATTCCACACCTTCA 57.523 30.769 0.00 0.00 36.12 3.02
2679 3066 9.445786 TTCAAGAAACATAAAAGATGAACGAAC 57.554 29.630 0.00 0.00 0.00 3.95
2682 3069 8.378172 AGAAACATAAAAGATGAACGAACTCA 57.622 30.769 0.00 0.00 0.00 3.41
2694 3081 4.569162 TGAACGAACTCAGGTACAAAACTG 59.431 41.667 0.00 0.00 36.07 3.16
2716 3103 1.421382 GCTGTAAAACTGACGGCGTA 58.579 50.000 14.74 0.20 39.29 4.42
2717 3104 1.794116 GCTGTAAAACTGACGGCGTAA 59.206 47.619 14.74 4.02 39.29 3.18
2718 3105 2.410646 GCTGTAAAACTGACGGCGTAAC 60.411 50.000 14.74 1.09 39.29 2.50
2719 3106 1.786004 TGTAAAACTGACGGCGTAACG 59.214 47.619 14.74 6.85 40.31 3.18
3216 3611 0.321919 AGTCGCAGTGCATCAACCAT 60.322 50.000 16.83 0.00 0.00 3.55
3225 3620 1.063792 TGCATCAACCATGGCAGGTAT 60.064 47.619 13.04 0.00 42.25 2.73
3232 3645 0.884704 CCATGGCAGGTATGTACGCC 60.885 60.000 0.00 0.68 45.11 5.68
3257 3670 0.249398 TTGCCGGTCTAGGAAGCTTC 59.751 55.000 18.54 18.54 0.00 3.86
3298 3711 1.411977 TGGCAAGGAACAATGTGGTTG 59.588 47.619 0.00 0.00 43.64 3.77
3299 3712 1.270252 GGCAAGGAACAATGTGGTTGG 60.270 52.381 0.00 0.00 42.28 3.77
3300 3713 1.412343 GCAAGGAACAATGTGGTTGGT 59.588 47.619 0.00 0.00 41.48 3.67
3301 3714 2.158971 GCAAGGAACAATGTGGTTGGTT 60.159 45.455 0.00 0.00 38.03 3.67
3302 3715 3.068873 GCAAGGAACAATGTGGTTGGTTA 59.931 43.478 0.00 0.00 38.03 2.85
3471 3884 0.811616 CCATGGACTACAAGCTCCGC 60.812 60.000 5.56 0.00 0.00 5.54
3546 3959 4.803426 CTGGGGCTGTCGCTCGAC 62.803 72.222 14.77 14.77 44.77 4.20
3612 4025 1.597854 CGTGCTGTCCAAGGAGCAA 60.598 57.895 4.79 0.00 46.49 3.91
3724 4154 4.415332 CGGCTGTCGCTGTACCGT 62.415 66.667 0.00 0.00 39.05 4.83
3771 4211 3.748048 CGAAGGAACTGACATGATTGTGT 59.252 43.478 0.00 0.00 40.86 3.72
3838 4278 4.760047 GCGCCGGCTTCAAGGAGA 62.760 66.667 26.68 0.00 35.83 3.71
3939 4398 4.982916 GTGAACTTCTGACGAGCTTTTCTA 59.017 41.667 0.00 0.00 0.00 2.10
4107 4590 2.487625 GGTACACCCACTGCAAAGGTAA 60.488 50.000 1.89 0.00 30.98 2.85
4108 4591 2.445682 ACACCCACTGCAAAGGTAAA 57.554 45.000 1.89 0.00 30.98 2.01
4163 4646 2.401351 CGCTAGGAAAATACTACCGGC 58.599 52.381 0.00 0.00 0.00 6.13
4202 4694 3.381045 CTGTTTGTTCGTCTCAGCTGTA 58.619 45.455 14.67 0.00 0.00 2.74
4292 4789 1.218316 CTGCTCGGTACAACCTCCC 59.782 63.158 0.00 0.00 35.66 4.30
4293 4790 1.229082 TGCTCGGTACAACCTCCCT 60.229 57.895 0.00 0.00 35.66 4.20
4294 4791 0.834687 TGCTCGGTACAACCTCCCTT 60.835 55.000 0.00 0.00 35.66 3.95
4296 4793 0.535797 CTCGGTACAACCTCCCTTCC 59.464 60.000 0.00 0.00 35.66 3.46
4299 4796 0.549413 GGTACAACCTCCCTTCCCCT 60.549 60.000 0.00 0.00 34.73 4.79
4305 4802 0.637743 ACCTCCCTTCCCCTCTACTC 59.362 60.000 0.00 0.00 0.00 2.59
4310 4807 2.145298 CCCTTCCCCTCTACTCCTAGA 58.855 57.143 0.00 0.00 0.00 2.43
4318 4815 4.457466 CCCTCTACTCCTAGACTTCAGAC 58.543 52.174 0.00 0.00 0.00 3.51
4319 4816 4.080243 CCCTCTACTCCTAGACTTCAGACA 60.080 50.000 0.00 0.00 0.00 3.41
4320 4817 4.879545 CCTCTACTCCTAGACTTCAGACAC 59.120 50.000 0.00 0.00 0.00 3.67
4321 4818 5.492895 CTCTACTCCTAGACTTCAGACACA 58.507 45.833 0.00 0.00 0.00 3.72
4322 4819 5.492895 TCTACTCCTAGACTTCAGACACAG 58.507 45.833 0.00 0.00 0.00 3.66
4323 4820 4.107127 ACTCCTAGACTTCAGACACAGT 57.893 45.455 0.00 0.00 0.00 3.55
4324 4821 4.475345 ACTCCTAGACTTCAGACACAGTT 58.525 43.478 0.00 0.00 0.00 3.16
4325 4822 4.521256 ACTCCTAGACTTCAGACACAGTTC 59.479 45.833 0.00 0.00 0.00 3.01
4326 4823 3.827302 TCCTAGACTTCAGACACAGTTCC 59.173 47.826 0.00 0.00 0.00 3.62
4328 4825 3.460857 AGACTTCAGACACAGTTCCAC 57.539 47.619 0.00 0.00 0.00 4.02
4329 4826 3.034635 AGACTTCAGACACAGTTCCACT 58.965 45.455 0.00 0.00 0.00 4.00
4330 4827 3.068873 AGACTTCAGACACAGTTCCACTC 59.931 47.826 0.00 0.00 0.00 3.51
4331 4828 2.766263 ACTTCAGACACAGTTCCACTCA 59.234 45.455 0.00 0.00 0.00 3.41
4332 4829 3.389329 ACTTCAGACACAGTTCCACTCAT 59.611 43.478 0.00 0.00 0.00 2.90
4333 4830 4.141620 ACTTCAGACACAGTTCCACTCATT 60.142 41.667 0.00 0.00 0.00 2.57
4334 4831 5.070446 ACTTCAGACACAGTTCCACTCATTA 59.930 40.000 0.00 0.00 0.00 1.90
4335 4832 4.883083 TCAGACACAGTTCCACTCATTAC 58.117 43.478 0.00 0.00 0.00 1.89
4336 4833 4.343814 TCAGACACAGTTCCACTCATTACA 59.656 41.667 0.00 0.00 0.00 2.41
4337 4834 4.449068 CAGACACAGTTCCACTCATTACAC 59.551 45.833 0.00 0.00 0.00 2.90
4348 4845 4.692625 CCACTCATTACACAACCTCTGAAG 59.307 45.833 0.00 0.00 0.00 3.02
4485 4987 2.145397 AGGTAAGATCTCGCTCCACA 57.855 50.000 0.00 0.00 0.00 4.17
4494 4996 0.820226 CTCGCTCCACAGATTCCTCA 59.180 55.000 0.00 0.00 0.00 3.86
4496 4998 0.534412 CGCTCCACAGATTCCTCACT 59.466 55.000 0.00 0.00 0.00 3.41
4517 5019 2.424956 TCGAGACTGACATGAGACATGG 59.575 50.000 14.70 1.94 0.00 3.66
4523 5025 1.134995 TGACATGAGACATGGTCGAGC 60.135 52.381 7.89 7.89 37.67 5.03
4524 5026 0.897621 ACATGAGACATGGTCGAGCA 59.102 50.000 21.02 21.02 37.67 4.26
4527 5029 1.256812 TGAGACATGGTCGAGCAAGA 58.743 50.000 24.81 0.81 37.67 3.02
4529 5031 1.474478 GAGACATGGTCGAGCAAGAGA 59.526 52.381 24.81 0.00 37.67 3.10
4530 5032 1.476085 AGACATGGTCGAGCAAGAGAG 59.524 52.381 24.81 13.25 37.67 3.20
4538 5041 3.129638 GGTCGAGCAAGAGAGTAACAGAT 59.870 47.826 10.30 0.00 0.00 2.90
4789 5296 2.834113 AGTACAGGCTCAGGGTATGTT 58.166 47.619 0.00 0.00 0.00 2.71
4790 5297 2.766828 AGTACAGGCTCAGGGTATGTTC 59.233 50.000 0.00 0.00 0.00 3.18
4797 5308 1.548719 CTCAGGGTATGTTCGTCACCA 59.451 52.381 0.00 0.00 33.78 4.17
4810 5321 0.991920 GTCACCATCCTTCTCCCCAA 59.008 55.000 0.00 0.00 0.00 4.12
4857 5373 5.277538 CCTCTAGTGCAACAAAAACTGACTC 60.278 44.000 0.00 0.00 41.43 3.36
4859 5375 5.880332 TCTAGTGCAACAAAAACTGACTCTT 59.120 36.000 0.00 0.00 41.43 2.85
4860 5376 4.737054 AGTGCAACAAAAACTGACTCTTG 58.263 39.130 0.00 0.00 41.43 3.02
4861 5377 3.859386 GTGCAACAAAAACTGACTCTTGG 59.141 43.478 0.00 0.00 36.32 3.61
4862 5378 3.509575 TGCAACAAAAACTGACTCTTGGT 59.490 39.130 0.00 0.00 0.00 3.67
4863 5379 3.859386 GCAACAAAAACTGACTCTTGGTG 59.141 43.478 0.00 0.00 39.08 4.17
4864 5380 4.618227 GCAACAAAAACTGACTCTTGGTGT 60.618 41.667 1.16 0.00 38.47 4.16
4865 5381 4.965119 ACAAAAACTGACTCTTGGTGTC 57.035 40.909 0.00 0.00 35.21 3.67
4894 5411 4.162888 TCCTACTAGTCGTACATGGACTCA 59.837 45.833 6.49 0.00 43.39 3.41
4906 5423 0.749049 TGGACTCAGAGATCATGGCG 59.251 55.000 3.79 0.00 0.00 5.69
4988 5505 0.685097 TGCTTCAGACGCCTAAAGGT 59.315 50.000 0.00 0.00 37.57 3.50
4990 5507 2.300723 TGCTTCAGACGCCTAAAGGTAA 59.699 45.455 0.00 0.00 37.57 2.85
5009 5526 8.697507 AAGGTAATAATAATCCTTCAGCCAAG 57.302 34.615 0.00 0.00 35.70 3.61
5014 5531 2.957402 AATCCTTCAGCCAAGTGTGA 57.043 45.000 0.00 0.00 0.00 3.58
5015 5532 2.486472 ATCCTTCAGCCAAGTGTGAG 57.514 50.000 0.00 0.00 0.00 3.51
5027 5544 3.833070 CCAAGTGTGAGTCCTAGTAGGTT 59.167 47.826 16.02 5.93 36.53 3.50
5038 5555 4.874396 GTCCTAGTAGGTTACCAATGCAAC 59.126 45.833 16.02 0.00 36.53 4.17
5040 5557 5.013287 TCCTAGTAGGTTACCAATGCAACAA 59.987 40.000 16.02 0.00 36.53 2.83
5042 5559 5.447624 AGTAGGTTACCAATGCAACAAAC 57.552 39.130 3.51 0.00 0.00 2.93
5072 5590 1.244816 GCACTAAACCACCCCTGAAC 58.755 55.000 0.00 0.00 0.00 3.18
5084 5612 0.738975 CCCTGAACATGCTGCATCTG 59.261 55.000 13.10 6.95 0.00 2.90
5126 5655 0.322997 TGGGTTTGGGTATGGAAGCG 60.323 55.000 0.00 0.00 0.00 4.68
5140 5669 1.502231 GAAGCGTGCAGAGTCTTCAA 58.498 50.000 15.00 0.00 36.04 2.69
5141 5670 1.193426 GAAGCGTGCAGAGTCTTCAAC 59.807 52.381 15.00 0.00 36.04 3.18
5142 5671 0.601311 AGCGTGCAGAGTCTTCAACC 60.601 55.000 0.00 0.00 0.00 3.77
5143 5672 1.891060 GCGTGCAGAGTCTTCAACCG 61.891 60.000 0.00 0.00 0.00 4.44
5144 5673 0.597637 CGTGCAGAGTCTTCAACCGT 60.598 55.000 0.00 0.00 0.00 4.83
5145 5674 1.335597 CGTGCAGAGTCTTCAACCGTA 60.336 52.381 0.00 0.00 0.00 4.02
5146 5675 2.059541 GTGCAGAGTCTTCAACCGTAC 58.940 52.381 0.00 0.00 0.00 3.67
5147 5676 1.961394 TGCAGAGTCTTCAACCGTACT 59.039 47.619 0.00 0.00 0.00 2.73
5148 5677 2.030185 TGCAGAGTCTTCAACCGTACTC 60.030 50.000 0.00 0.00 38.90 2.59
5150 5679 3.305471 GCAGAGTCTTCAACCGTACTCTT 60.305 47.826 0.00 0.00 44.81 2.85
5151 5680 4.230657 CAGAGTCTTCAACCGTACTCTTG 58.769 47.826 0.00 0.00 44.81 3.02
5152 5681 3.256136 AGAGTCTTCAACCGTACTCTTGG 59.744 47.826 0.00 0.00 44.81 3.61
5153 5682 2.067013 GTCTTCAACCGTACTCTTGGC 58.933 52.381 0.00 0.00 0.00 4.52
5154 5683 1.968493 TCTTCAACCGTACTCTTGGCT 59.032 47.619 0.00 0.00 0.00 4.75
5166 5695 2.009774 CTCTTGGCTTCAACCATACCG 58.990 52.381 0.00 0.00 40.13 4.02
5171 5700 0.963355 GCTTCAACCATACCGGGCAA 60.963 55.000 6.32 0.00 40.22 4.52
5196 5725 9.709495 AAATACTTTGCTATGATGCTTTTCAAA 57.291 25.926 0.00 0.00 0.00 2.69
5199 5728 7.609056 ACTTTGCTATGATGCTTTTCAAAGAT 58.391 30.769 15.80 0.00 40.50 2.40
5327 5857 1.887956 GCATTTCTGCTCCCCTTGTGA 60.888 52.381 0.00 0.00 45.32 3.58
5337 5867 0.391661 CCCCTTGTGACTGTGGATCG 60.392 60.000 0.00 0.00 0.00 3.69
5447 5977 8.966868 TCTGTCATTTTTAAGGTCTGTTTTCTT 58.033 29.630 0.00 0.00 0.00 2.52
5448 5978 8.925161 TGTCATTTTTAAGGTCTGTTTTCTTG 57.075 30.769 0.00 0.00 0.00 3.02
5449 5979 8.744652 TGTCATTTTTAAGGTCTGTTTTCTTGA 58.255 29.630 0.00 0.00 0.00 3.02
5450 5980 9.581099 GTCATTTTTAAGGTCTGTTTTCTTGAA 57.419 29.630 0.00 0.00 0.00 2.69
5462 5992 4.168760 GTTTTCTTGAATGAATGCCCTCG 58.831 43.478 0.00 0.00 0.00 4.63
5466 5996 0.534873 TGAATGAATGCCCTCGTCGA 59.465 50.000 0.00 0.00 0.00 4.20
5480 6010 3.562232 TCGAAACACCGGGGGCTT 61.562 61.111 9.50 0.00 0.00 4.35
5483 6013 0.678684 CGAAACACCGGGGGCTTTAT 60.679 55.000 9.50 0.00 0.00 1.40
5589 6127 1.595357 GTCCTCACTGGTAACCCGG 59.405 63.158 0.00 0.00 43.41 5.73
5626 6264 8.033178 TGATGTGATTCTGGTGATCCTATTTA 57.967 34.615 0.00 0.00 34.23 1.40
5666 6304 2.507484 CTGAAAACAGGACTCCATGCA 58.493 47.619 0.00 0.00 0.00 3.96
5669 6307 2.486472 AAACAGGACTCCATGCAGAG 57.514 50.000 0.00 1.57 39.91 3.35
5670 6308 1.649321 AACAGGACTCCATGCAGAGA 58.351 50.000 9.77 0.00 37.33 3.10
5671 6309 1.193323 ACAGGACTCCATGCAGAGAG 58.807 55.000 9.77 11.44 37.33 3.20
5673 6311 0.325484 AGGACTCCATGCAGAGAGCT 60.325 55.000 14.11 0.00 45.94 4.09
5674 6312 0.104671 GGACTCCATGCAGAGAGCTC 59.895 60.000 5.27 5.27 45.94 4.09
5675 6313 0.822811 GACTCCATGCAGAGAGCTCA 59.177 55.000 17.77 0.00 45.94 4.26
5676 6314 0.536260 ACTCCATGCAGAGAGCTCAC 59.464 55.000 17.77 10.21 45.94 3.51
5677 6315 0.825410 CTCCATGCAGAGAGCTCACT 59.175 55.000 17.77 12.80 45.94 3.41
5678 6316 2.030371 CTCCATGCAGAGAGCTCACTA 58.970 52.381 17.77 0.79 45.94 2.74
5679 6317 2.030371 TCCATGCAGAGAGCTCACTAG 58.970 52.381 17.77 10.78 45.94 2.57
5823 6461 0.396811 AGGGAGTTTCAGGGTTGTCG 59.603 55.000 0.00 0.00 0.00 4.35
5875 6514 8.737168 AATCAAATGACGATAGGAAAATCTCA 57.263 30.769 0.00 0.00 43.77 3.27
5940 6579 1.550976 CCAGCCCGTAGAAAGAAGACT 59.449 52.381 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.067936 ACGACCTGGTCTTGTTCTATCATAG 59.932 44.000 23.49 6.21 0.00 2.23
1 2 4.954202 ACGACCTGGTCTTGTTCTATCATA 59.046 41.667 23.49 0.00 0.00 2.15
2 3 3.769844 ACGACCTGGTCTTGTTCTATCAT 59.230 43.478 23.49 0.00 0.00 2.45
3 4 3.056821 CACGACCTGGTCTTGTTCTATCA 60.057 47.826 23.49 0.00 29.12 2.15
4 5 3.512680 CACGACCTGGTCTTGTTCTATC 58.487 50.000 23.49 0.00 29.12 2.08
5 6 2.233922 CCACGACCTGGTCTTGTTCTAT 59.766 50.000 25.86 1.49 34.90 1.98
6 7 1.616865 CCACGACCTGGTCTTGTTCTA 59.383 52.381 25.86 0.00 34.90 2.10
7 8 0.393077 CCACGACCTGGTCTTGTTCT 59.607 55.000 25.86 1.49 34.90 3.01
8 9 1.228657 GCCACGACCTGGTCTTGTTC 61.229 60.000 25.86 16.18 42.99 3.18
9 10 1.227853 GCCACGACCTGGTCTTGTT 60.228 57.895 25.86 6.88 42.99 2.83
10 11 2.426023 GCCACGACCTGGTCTTGT 59.574 61.111 25.86 15.15 42.99 3.16
11 12 2.358737 GGCCACGACCTGGTCTTG 60.359 66.667 22.55 22.55 42.12 3.02
12 13 3.637273 GGGCCACGACCTGGTCTT 61.637 66.667 23.49 12.70 45.18 3.01
13 14 4.954118 TGGGCCACGACCTGGTCT 62.954 66.667 23.49 8.88 45.18 3.85
14 15 4.699522 GTGGGCCACGACCTGGTC 62.700 72.222 22.83 16.99 45.10 4.02
25 26 3.305177 CTGCTTGCAATGGTGGGCC 62.305 63.158 0.00 0.00 0.00 5.80
26 27 2.263540 CTGCTTGCAATGGTGGGC 59.736 61.111 0.00 0.00 0.00 5.36
27 28 2.263540 GCTGCTTGCAATGGTGGG 59.736 61.111 0.00 0.00 42.31 4.61
28 29 2.102109 TTGGCTGCTTGCAATGGTGG 62.102 55.000 0.00 0.00 45.15 4.61
29 30 0.669318 CTTGGCTGCTTGCAATGGTG 60.669 55.000 0.00 0.00 45.15 4.17
30 31 1.669440 CTTGGCTGCTTGCAATGGT 59.331 52.632 0.00 0.00 45.15 3.55
31 32 1.740296 GCTTGGCTGCTTGCAATGG 60.740 57.895 0.00 0.00 45.15 3.16
32 33 0.391130 ATGCTTGGCTGCTTGCAATG 60.391 50.000 15.49 0.00 45.15 2.82
33 34 0.323629 AATGCTTGGCTGCTTGCAAT 59.676 45.000 15.49 7.52 45.15 3.56
34 35 0.601576 CAATGCTTGGCTGCTTGCAA 60.602 50.000 15.49 0.00 45.15 4.08
35 36 1.005512 CAATGCTTGGCTGCTTGCA 60.006 52.632 14.36 14.36 45.15 4.08
36 37 0.320073 TTCAATGCTTGGCTGCTTGC 60.320 50.000 0.00 2.41 41.94 4.01
37 38 2.157834 TTTCAATGCTTGGCTGCTTG 57.842 45.000 0.00 0.00 0.00 4.01
38 39 2.103601 ACTTTTCAATGCTTGGCTGCTT 59.896 40.909 0.00 0.00 0.00 3.91
39 40 1.690352 ACTTTTCAATGCTTGGCTGCT 59.310 42.857 0.00 0.00 0.00 4.24
40 41 1.796459 CACTTTTCAATGCTTGGCTGC 59.204 47.619 0.00 0.00 0.00 5.25
41 42 2.036217 TCCACTTTTCAATGCTTGGCTG 59.964 45.455 0.00 0.00 0.00 4.85
42 43 2.298163 CTCCACTTTTCAATGCTTGGCT 59.702 45.455 0.00 0.00 0.00 4.75
43 44 2.611224 CCTCCACTTTTCAATGCTTGGC 60.611 50.000 0.00 0.00 0.00 4.52
44 45 2.611224 GCCTCCACTTTTCAATGCTTGG 60.611 50.000 0.00 0.00 0.00 3.61
45 46 2.036217 TGCCTCCACTTTTCAATGCTTG 59.964 45.455 0.00 0.00 0.00 4.01
46 47 2.318908 TGCCTCCACTTTTCAATGCTT 58.681 42.857 0.00 0.00 0.00 3.91
47 48 1.999648 TGCCTCCACTTTTCAATGCT 58.000 45.000 0.00 0.00 0.00 3.79
48 49 2.611224 CCTTGCCTCCACTTTTCAATGC 60.611 50.000 0.00 0.00 0.00 3.56
49 50 2.611224 GCCTTGCCTCCACTTTTCAATG 60.611 50.000 0.00 0.00 0.00 2.82
50 51 1.620323 GCCTTGCCTCCACTTTTCAAT 59.380 47.619 0.00 0.00 0.00 2.57
51 52 1.039856 GCCTTGCCTCCACTTTTCAA 58.960 50.000 0.00 0.00 0.00 2.69
52 53 0.106268 TGCCTTGCCTCCACTTTTCA 60.106 50.000 0.00 0.00 0.00 2.69
53 54 1.067354 CATGCCTTGCCTCCACTTTTC 60.067 52.381 0.00 0.00 0.00 2.29
54 55 0.971386 CATGCCTTGCCTCCACTTTT 59.029 50.000 0.00 0.00 0.00 2.27
55 56 0.901580 CCATGCCTTGCCTCCACTTT 60.902 55.000 0.00 0.00 0.00 2.66
56 57 1.304713 CCATGCCTTGCCTCCACTT 60.305 57.895 0.00 0.00 0.00 3.16
57 58 2.357836 CCATGCCTTGCCTCCACT 59.642 61.111 0.00 0.00 0.00 4.00
58 59 3.455469 GCCATGCCTTGCCTCCAC 61.455 66.667 0.00 0.00 0.00 4.02
59 60 4.764771 GGCCATGCCTTGCCTCCA 62.765 66.667 0.00 0.00 46.69 3.86
83 84 2.431057 TGCCTAACCCGCAAAAGAAAAA 59.569 40.909 0.00 0.00 32.05 1.94
84 85 2.032620 TGCCTAACCCGCAAAAGAAAA 58.967 42.857 0.00 0.00 32.05 2.29
85 86 1.693627 TGCCTAACCCGCAAAAGAAA 58.306 45.000 0.00 0.00 32.05 2.52
86 87 1.611491 CTTGCCTAACCCGCAAAAGAA 59.389 47.619 0.00 0.00 45.11 2.52
87 88 1.243902 CTTGCCTAACCCGCAAAAGA 58.756 50.000 0.00 0.00 45.11 2.52
88 89 0.243636 CCTTGCCTAACCCGCAAAAG 59.756 55.000 0.00 0.00 45.11 2.27
89 90 1.811645 GCCTTGCCTAACCCGCAAAA 61.812 55.000 0.00 0.00 45.11 2.44
90 91 2.272447 GCCTTGCCTAACCCGCAAA 61.272 57.895 0.00 0.00 45.11 3.68
91 92 2.675075 GCCTTGCCTAACCCGCAA 60.675 61.111 0.00 0.00 43.71 4.85
92 93 3.280938 ATGCCTTGCCTAACCCGCA 62.281 57.895 0.00 0.00 0.00 5.69
93 94 2.440247 ATGCCTTGCCTAACCCGC 60.440 61.111 0.00 0.00 0.00 6.13
94 95 2.120909 CCATGCCTTGCCTAACCCG 61.121 63.158 0.00 0.00 0.00 5.28
95 96 2.426406 GCCATGCCTTGCCTAACCC 61.426 63.158 0.00 0.00 0.00 4.11
96 97 2.426406 GGCCATGCCTTGCCTAACC 61.426 63.158 0.00 0.00 46.69 2.85
97 98 3.210302 GGCCATGCCTTGCCTAAC 58.790 61.111 0.00 0.00 46.69 2.34
131 132 9.995003 TTAAAGGAAAAAGTACGGATTAGTACA 57.005 29.630 9.52 0.00 46.85 2.90
133 134 9.154847 GCTTAAAGGAAAAAGTACGGATTAGTA 57.845 33.333 0.00 0.00 0.00 1.82
134 135 7.662669 TGCTTAAAGGAAAAAGTACGGATTAGT 59.337 33.333 0.00 0.00 0.00 2.24
135 136 8.036273 TGCTTAAAGGAAAAAGTACGGATTAG 57.964 34.615 0.00 0.00 0.00 1.73
136 137 7.879160 TCTGCTTAAAGGAAAAAGTACGGATTA 59.121 33.333 0.00 0.00 0.00 1.75
138 139 6.235664 TCTGCTTAAAGGAAAAAGTACGGAT 58.764 36.000 0.00 0.00 0.00 4.18
139 140 5.613329 TCTGCTTAAAGGAAAAAGTACGGA 58.387 37.500 0.00 0.00 0.00 4.69
141 142 5.617087 GCCTCTGCTTAAAGGAAAAAGTACG 60.617 44.000 0.00 0.00 34.35 3.67
142 143 5.240844 TGCCTCTGCTTAAAGGAAAAAGTAC 59.759 40.000 0.00 0.00 38.71 2.73
144 145 4.215109 TGCCTCTGCTTAAAGGAAAAAGT 58.785 39.130 0.00 0.00 38.71 2.66
149 150 1.826385 GCTGCCTCTGCTTAAAGGAA 58.174 50.000 0.00 0.00 38.71 3.36
150 151 0.391661 CGCTGCCTCTGCTTAAAGGA 60.392 55.000 0.00 0.00 38.71 3.36
152 153 1.300971 TGCGCTGCCTCTGCTTAAAG 61.301 55.000 9.73 0.00 38.71 1.85
153 154 1.300971 CTGCGCTGCCTCTGCTTAAA 61.301 55.000 9.73 0.00 38.71 1.52
234 238 3.299977 TCCTGGACGGTGTGACGG 61.300 66.667 0.00 0.00 38.39 4.79
235 239 2.049433 GTCCTGGACGGTGTGACG 60.049 66.667 11.71 0.00 40.31 4.35
258 262 2.935955 CAAAGTCGCCACCGTGTC 59.064 61.111 0.00 0.00 35.54 3.67
284 288 6.532657 CGGTACATCATCCGTTTACTTTTACT 59.467 38.462 0.00 0.00 41.58 2.24
321 325 2.782615 GTGCGCGTTGGGTCATAC 59.217 61.111 8.43 0.00 0.00 2.39
350 354 0.470766 AGACGATCGAGGAGTAGGCT 59.529 55.000 24.34 0.00 0.00 4.58
361 365 0.660488 CTCTGGACCTCAGACGATCG 59.340 60.000 14.88 14.88 46.71 3.69
364 368 0.034960 CTCCTCTGGACCTCAGACGA 60.035 60.000 0.00 0.00 46.71 4.20
368 372 1.001503 AGCCTCCTCTGGACCTCAG 59.998 63.158 0.00 0.00 44.68 3.35
374 378 1.979155 CGTGTGAGCCTCCTCTGGA 60.979 63.158 0.00 0.00 38.93 3.86
393 397 2.840102 TTGGTTTTGGCCGGGGTG 60.840 61.111 2.18 0.00 0.00 4.61
394 398 2.523168 CTTGGTTTTGGCCGGGGT 60.523 61.111 2.18 0.00 0.00 4.95
396 400 1.524008 GAGTCTTGGTTTTGGCCGGG 61.524 60.000 2.18 0.00 0.00 5.73
399 403 1.068588 GGTTGAGTCTTGGTTTTGGCC 59.931 52.381 0.00 0.00 0.00 5.36
400 404 1.269051 CGGTTGAGTCTTGGTTTTGGC 60.269 52.381 0.00 0.00 0.00 4.52
401 405 2.021457 ACGGTTGAGTCTTGGTTTTGG 58.979 47.619 0.00 0.00 0.00 3.28
402 406 2.223479 CCACGGTTGAGTCTTGGTTTTG 60.223 50.000 0.00 0.00 0.00 2.44
403 407 2.021457 CCACGGTTGAGTCTTGGTTTT 58.979 47.619 0.00 0.00 0.00 2.43
404 408 1.675552 CCACGGTTGAGTCTTGGTTT 58.324 50.000 0.00 0.00 0.00 3.27
407 412 1.302511 CCCCACGGTTGAGTCTTGG 60.303 63.158 0.00 0.00 0.00 3.61
416 421 2.116772 TCTCGAGACCCCACGGTT 59.883 61.111 12.08 0.00 44.88 4.44
425 430 0.722848 GAGTCGGTCAGTCTCGAGAC 59.277 60.000 33.52 33.52 45.08 3.36
435 440 0.311790 GGTACGTGTTGAGTCGGTCA 59.688 55.000 0.00 0.00 0.00 4.02
436 441 0.387750 GGGTACGTGTTGAGTCGGTC 60.388 60.000 0.00 0.00 0.00 4.79
437 442 1.662044 GGGTACGTGTTGAGTCGGT 59.338 57.895 0.00 0.00 0.00 4.69
438 443 1.080298 GGGGTACGTGTTGAGTCGG 60.080 63.158 0.00 0.00 0.00 4.79
440 445 2.028385 AGATTGGGGTACGTGTTGAGTC 60.028 50.000 0.00 0.00 0.00 3.36
441 446 1.975680 AGATTGGGGTACGTGTTGAGT 59.024 47.619 0.00 0.00 0.00 3.41
442 447 2.028476 TGAGATTGGGGTACGTGTTGAG 60.028 50.000 0.00 0.00 0.00 3.02
443 448 1.972075 TGAGATTGGGGTACGTGTTGA 59.028 47.619 0.00 0.00 0.00 3.18
444 449 2.073816 GTGAGATTGGGGTACGTGTTG 58.926 52.381 0.00 0.00 0.00 3.33
445 450 1.337447 CGTGAGATTGGGGTACGTGTT 60.337 52.381 0.00 0.00 0.00 3.32
446 451 0.245539 CGTGAGATTGGGGTACGTGT 59.754 55.000 0.00 0.00 0.00 4.49
447 452 0.459585 CCGTGAGATTGGGGTACGTG 60.460 60.000 0.00 0.00 33.28 4.49
454 459 0.745845 CTTGGAGCCGTGAGATTGGG 60.746 60.000 0.00 0.00 0.00 4.12
456 461 2.093216 GCTTGGAGCCGTGAGATTG 58.907 57.895 0.00 0.00 34.48 2.67
466 471 0.884514 GAGACTTTTGGGCTTGGAGC 59.115 55.000 0.00 0.00 41.46 4.70
469 474 1.160137 CTCGAGACTTTTGGGCTTGG 58.840 55.000 6.58 0.00 0.00 3.61
471 476 1.694696 AGACTCGAGACTTTTGGGCTT 59.305 47.619 21.68 0.00 0.00 4.35
472 477 1.273886 GAGACTCGAGACTTTTGGGCT 59.726 52.381 21.68 0.00 0.00 5.19
473 478 1.000955 TGAGACTCGAGACTTTTGGGC 59.999 52.381 21.68 5.77 0.00 5.36
474 479 2.297597 AGTGAGACTCGAGACTTTTGGG 59.702 50.000 21.68 0.00 0.00 4.12
491 505 0.687354 GGGTCAGGAAAGCAGAGTGA 59.313 55.000 0.00 0.00 0.00 3.41
493 507 0.832135 TCGGGTCAGGAAAGCAGAGT 60.832 55.000 0.00 0.00 0.00 3.24
499 513 2.565841 GATGGAATCGGGTCAGGAAAG 58.434 52.381 0.00 0.00 31.13 2.62
517 548 6.730977 TCCTCCGGGAAGAAAATATATGAGAT 59.269 38.462 0.00 0.00 38.93 2.75
527 558 1.737199 TTCCTCCTCCGGGAAGAAAA 58.263 50.000 0.00 0.00 38.64 2.29
531 562 1.340114 CCTTTTTCCTCCTCCGGGAAG 60.340 57.143 0.00 0.00 42.79 3.46
533 564 0.475048 ACCTTTTTCCTCCTCCGGGA 60.475 55.000 0.00 0.00 39.70 5.14
535 566 0.960861 GCACCTTTTTCCTCCTCCGG 60.961 60.000 0.00 0.00 0.00 5.14
536 567 1.298859 CGCACCTTTTTCCTCCTCCG 61.299 60.000 0.00 0.00 0.00 4.63
537 568 1.587043 GCGCACCTTTTTCCTCCTCC 61.587 60.000 0.30 0.00 0.00 4.30
538 569 1.587043 GGCGCACCTTTTTCCTCCTC 61.587 60.000 10.83 0.00 0.00 3.71
561 592 0.462225 GGGGTTAGGAGCGAGAAAGC 60.462 60.000 0.00 0.00 37.41 3.51
567 598 0.184451 ATACTCGGGGTTAGGAGCGA 59.816 55.000 0.00 0.00 33.55 4.93
576 607 1.183676 GGCGGATGTATACTCGGGGT 61.184 60.000 4.17 0.00 0.00 4.95
583 614 1.948104 TGCTGTTGGCGGATGTATAC 58.052 50.000 0.00 0.00 45.43 1.47
640 671 1.240256 GACGGTGTGTCTGTCTCTCT 58.760 55.000 0.00 0.00 45.93 3.10
656 695 3.450115 GGTGGACGGAGGAGGACG 61.450 72.222 0.00 0.00 0.00 4.79
657 696 3.075641 GGGTGGACGGAGGAGGAC 61.076 72.222 0.00 0.00 0.00 3.85
658 697 4.393778 GGGGTGGACGGAGGAGGA 62.394 72.222 0.00 0.00 0.00 3.71
674 713 4.856801 CGGGAAGGCGACATGGGG 62.857 72.222 0.00 0.00 0.00 4.96
698 740 1.304617 GCAAGGGAAGGGAAGGGAG 59.695 63.158 0.00 0.00 0.00 4.30
699 741 1.465188 TGCAAGGGAAGGGAAGGGA 60.465 57.895 0.00 0.00 0.00 4.20
700 742 1.304464 GTGCAAGGGAAGGGAAGGG 60.304 63.158 0.00 0.00 0.00 3.95
701 743 1.675641 CGTGCAAGGGAAGGGAAGG 60.676 63.158 0.00 0.00 0.00 3.46
702 744 0.955919 GACGTGCAAGGGAAGGGAAG 60.956 60.000 4.26 0.00 0.00 3.46
728 770 1.269723 GCTGGTTGCTTGGGTTAAGTC 59.730 52.381 0.00 0.00 38.70 3.01
729 771 1.328279 GCTGGTTGCTTGGGTTAAGT 58.672 50.000 0.00 0.00 38.70 2.24
731 773 1.801309 GCGCTGGTTGCTTGGGTTAA 61.801 55.000 0.00 0.00 40.11 2.01
732 774 2.265182 GCGCTGGTTGCTTGGGTTA 61.265 57.895 0.00 0.00 40.11 2.85
733 775 3.605664 GCGCTGGTTGCTTGGGTT 61.606 61.111 0.00 0.00 40.11 4.11
736 778 4.093952 CTCGCGCTGGTTGCTTGG 62.094 66.667 5.56 0.00 40.11 3.61
737 779 4.748679 GCTCGCGCTGGTTGCTTG 62.749 66.667 5.56 0.00 40.11 4.01
738 780 4.996434 AGCTCGCGCTGGTTGCTT 62.996 61.111 5.56 0.00 46.86 3.91
771 830 2.357517 AGTGTACTGCTGCGGTGC 60.358 61.111 23.76 22.22 0.00 5.01
772 831 1.738099 GGAGTGTACTGCTGCGGTG 60.738 63.158 23.76 5.01 0.00 4.94
775 834 1.630244 GCTTGGAGTGTACTGCTGCG 61.630 60.000 5.16 0.00 35.18 5.18
804 863 1.109920 ATGATGACGACGGGAGGGAG 61.110 60.000 0.00 0.00 0.00 4.30
805 864 1.076265 ATGATGACGACGGGAGGGA 60.076 57.895 0.00 0.00 0.00 4.20
850 917 1.395826 GGGCTCCTACTGCTCGTGAT 61.396 60.000 0.00 0.00 0.00 3.06
851 918 2.052690 GGGCTCCTACTGCTCGTGA 61.053 63.158 0.00 0.00 0.00 4.35
898 965 1.957765 GAGGTTAGGTGGGCTCGGAC 61.958 65.000 0.00 0.00 0.00 4.79
934 1007 1.607612 GGGAGAATTTGGGCGAGGA 59.392 57.895 0.00 0.00 0.00 3.71
940 1013 1.492599 GAGAGAGGGGGAGAATTTGGG 59.507 57.143 0.00 0.00 0.00 4.12
943 1016 2.112190 GTCGAGAGAGGGGGAGAATTT 58.888 52.381 0.00 0.00 43.49 1.82
949 1022 2.043852 GCTGTCGAGAGAGGGGGA 60.044 66.667 14.74 0.00 43.49 4.81
953 1026 3.408501 CTGCGGCTGTCGAGAGAGG 62.409 68.421 14.74 4.85 43.49 3.69
984 1057 3.925238 ATTTCCGCGCGCACGATC 61.925 61.111 32.61 0.00 43.93 3.69
985 1058 4.222589 CATTTCCGCGCGCACGAT 62.223 61.111 32.61 15.72 43.93 3.73
1253 1326 1.264288 CGGACTTGGACTTGAACTTGC 59.736 52.381 0.00 0.00 0.00 4.01
1353 1434 1.602311 ATCGATCAAATCAGCAGGGC 58.398 50.000 0.00 0.00 0.00 5.19
1496 1729 8.049117 AGCTTTGGTCACAATCTTTCATATCTA 58.951 33.333 0.00 0.00 36.29 1.98
1505 1738 5.859205 AAAGAAGCTTTGGTCACAATCTT 57.141 34.783 0.00 0.00 35.06 2.40
1511 1744 8.648557 AAAAGATTAAAAGAAGCTTTGGTCAC 57.351 30.769 0.00 0.00 0.00 3.67
1540 1773 9.449719 AGACTAAAAGAAGTTCAGTTTCTTGAA 57.550 29.630 5.50 0.00 42.43 2.69
1541 1774 8.883731 CAGACTAAAAGAAGTTCAGTTTCTTGA 58.116 33.333 5.50 0.00 42.43 3.02
1542 1775 7.641802 GCAGACTAAAAGAAGTTCAGTTTCTTG 59.358 37.037 5.50 4.07 42.43 3.02
1543 1776 7.466050 CGCAGACTAAAAGAAGTTCAGTTTCTT 60.466 37.037 5.50 0.00 44.47 2.52
1544 1777 6.018669 CGCAGACTAAAAGAAGTTCAGTTTCT 60.019 38.462 5.50 0.00 36.49 2.52
1545 1778 6.130058 CGCAGACTAAAAGAAGTTCAGTTTC 58.870 40.000 5.50 0.00 0.00 2.78
1546 1779 5.007724 CCGCAGACTAAAAGAAGTTCAGTTT 59.992 40.000 5.50 7.60 0.00 2.66
1547 1780 4.511826 CCGCAGACTAAAAGAAGTTCAGTT 59.488 41.667 5.50 1.13 0.00 3.16
1548 1781 4.058817 CCGCAGACTAAAAGAAGTTCAGT 58.941 43.478 5.50 0.00 0.00 3.41
1549 1782 4.058817 ACCGCAGACTAAAAGAAGTTCAG 58.941 43.478 5.50 0.00 0.00 3.02
1550 1783 3.807622 CACCGCAGACTAAAAGAAGTTCA 59.192 43.478 5.50 0.00 0.00 3.18
1551 1784 3.186613 CCACCGCAGACTAAAAGAAGTTC 59.813 47.826 0.00 0.00 0.00 3.01
1552 1785 3.139077 CCACCGCAGACTAAAAGAAGTT 58.861 45.455 0.00 0.00 0.00 2.66
1553 1786 2.550208 CCCACCGCAGACTAAAAGAAGT 60.550 50.000 0.00 0.00 0.00 3.01
1554 1787 2.076863 CCCACCGCAGACTAAAAGAAG 58.923 52.381 0.00 0.00 0.00 2.85
1555 1788 1.271163 CCCCACCGCAGACTAAAAGAA 60.271 52.381 0.00 0.00 0.00 2.52
1556 1789 0.323629 CCCCACCGCAGACTAAAAGA 59.676 55.000 0.00 0.00 0.00 2.52
1557 1790 0.676782 CCCCCACCGCAGACTAAAAG 60.677 60.000 0.00 0.00 0.00 2.27
1558 1791 1.128809 TCCCCCACCGCAGACTAAAA 61.129 55.000 0.00 0.00 0.00 1.52
1559 1792 1.128809 TTCCCCCACCGCAGACTAAA 61.129 55.000 0.00 0.00 0.00 1.85
1560 1793 1.128809 TTTCCCCCACCGCAGACTAA 61.129 55.000 0.00 0.00 0.00 2.24
1561 1794 1.536907 TTTCCCCCACCGCAGACTA 60.537 57.895 0.00 0.00 0.00 2.59
1562 1795 2.852075 TTTCCCCCACCGCAGACT 60.852 61.111 0.00 0.00 0.00 3.24
1563 1796 2.359975 CTTTCCCCCACCGCAGAC 60.360 66.667 0.00 0.00 0.00 3.51
1564 1797 3.646715 CCTTTCCCCCACCGCAGA 61.647 66.667 0.00 0.00 0.00 4.26
1565 1798 4.740822 CCCTTTCCCCCACCGCAG 62.741 72.222 0.00 0.00 0.00 5.18
1567 1800 4.735358 GTCCCTTTCCCCCACCGC 62.735 72.222 0.00 0.00 0.00 5.68
1568 1801 2.076597 AAAGTCCCTTTCCCCCACCG 62.077 60.000 0.00 0.00 0.00 4.94
1569 1802 1.078115 TAAAGTCCCTTTCCCCCACC 58.922 55.000 0.00 0.00 35.21 4.61
1570 1803 1.426215 TGTAAAGTCCCTTTCCCCCAC 59.574 52.381 0.00 0.00 35.21 4.61
1571 1804 1.835895 TGTAAAGTCCCTTTCCCCCA 58.164 50.000 0.00 0.00 35.21 4.96
1572 1805 2.984435 TTGTAAAGTCCCTTTCCCCC 57.016 50.000 0.00 0.00 35.21 5.40
1592 1825 3.982516 ACTATCCACTAGCTGTCCAGAA 58.017 45.455 0.00 0.00 0.00 3.02
1594 1827 7.526142 TTTATACTATCCACTAGCTGTCCAG 57.474 40.000 0.00 0.00 0.00 3.86
1595 1828 8.492415 AATTTATACTATCCACTAGCTGTCCA 57.508 34.615 0.00 0.00 0.00 4.02
1596 1829 9.780186 AAAATTTATACTATCCACTAGCTGTCC 57.220 33.333 0.00 0.00 0.00 4.02
1598 1831 9.057089 GCAAAATTTATACTATCCACTAGCTGT 57.943 33.333 0.00 0.00 0.00 4.40
1599 1832 8.507249 GGCAAAATTTATACTATCCACTAGCTG 58.493 37.037 0.00 0.00 0.00 4.24
1600 1833 7.665974 GGGCAAAATTTATACTATCCACTAGCT 59.334 37.037 0.00 0.00 0.00 3.32
1601 1834 7.360946 CGGGCAAAATTTATACTATCCACTAGC 60.361 40.741 0.00 0.00 0.00 3.42
1602 1835 7.119262 CCGGGCAAAATTTATACTATCCACTAG 59.881 40.741 0.00 0.00 0.00 2.57
1603 1836 6.938030 CCGGGCAAAATTTATACTATCCACTA 59.062 38.462 0.00 0.00 0.00 2.74
1604 1837 5.768164 CCGGGCAAAATTTATACTATCCACT 59.232 40.000 0.00 0.00 0.00 4.00
1605 1838 5.533528 ACCGGGCAAAATTTATACTATCCAC 59.466 40.000 6.32 0.00 0.00 4.02
1606 1839 5.697067 ACCGGGCAAAATTTATACTATCCA 58.303 37.500 6.32 0.00 0.00 3.41
1607 1840 6.294342 GGAACCGGGCAAAATTTATACTATCC 60.294 42.308 6.32 0.00 0.00 2.59
1608 1841 6.263617 TGGAACCGGGCAAAATTTATACTATC 59.736 38.462 6.32 0.00 0.00 2.08
1609 1842 6.130569 TGGAACCGGGCAAAATTTATACTAT 58.869 36.000 6.32 0.00 0.00 2.12
1610 1843 5.507637 TGGAACCGGGCAAAATTTATACTA 58.492 37.500 6.32 0.00 0.00 1.82
1611 1844 4.345854 TGGAACCGGGCAAAATTTATACT 58.654 39.130 6.32 0.00 0.00 2.12
1612 1845 4.722361 TGGAACCGGGCAAAATTTATAC 57.278 40.909 6.32 0.00 0.00 1.47
1613 1846 5.422331 TGAATGGAACCGGGCAAAATTTATA 59.578 36.000 6.32 0.00 0.00 0.98
1626 1859 3.540211 AGCTGACTGAATGGAACCG 57.460 52.632 0.00 0.00 0.00 4.44
1643 1876 7.084486 GCCTGATTCTACCTTTTACAAAACAG 58.916 38.462 0.00 0.00 0.00 3.16
1678 1915 4.265073 GCCACTTAGATGACATTCAACCT 58.735 43.478 0.00 0.00 0.00 3.50
1692 1929 6.155827 TGAATTCGAATTTTTGGCCACTTAG 58.844 36.000 23.49 0.00 0.00 2.18
1737 1976 4.364860 GGTTTGCGTTTGAATTTGGTACT 58.635 39.130 0.00 0.00 0.00 2.73
1758 1997 2.805353 CACGGTCGAGCAAGACGG 60.805 66.667 15.89 14.41 44.01 4.79
1763 2002 1.604308 TACCTCCACGGTCGAGCAA 60.604 57.895 15.89 0.00 44.93 3.91
1793 2035 3.657015 ATCACGGACTAGCATCATCAG 57.343 47.619 0.00 0.00 0.00 2.90
1808 2050 4.609691 ACCGTTAATAAGGCAAATCACG 57.390 40.909 0.00 0.00 0.00 4.35
1809 2051 6.090223 CCAAAACCGTTAATAAGGCAAATCAC 59.910 38.462 0.00 0.00 0.00 3.06
1825 2067 2.482721 CACGAGAATTAGCCAAAACCGT 59.517 45.455 0.00 0.00 0.00 4.83
1844 2089 5.299279 TGAATTTCAACAGTTCCTTCCTCAC 59.701 40.000 0.00 0.00 0.00 3.51
1852 2097 6.980397 ACTTTGACATGAATTTCAACAGTTCC 59.020 34.615 0.00 0.00 31.42 3.62
1864 2109 8.322906 TCGAGTAATTTCACTTTGACATGAAT 57.677 30.769 0.00 0.00 34.87 2.57
1876 2121 5.504755 CGCAATCAAACTCGAGTAATTTCAC 59.495 40.000 20.39 6.22 0.00 3.18
1888 2133 3.180387 GTCAAACTTGCGCAATCAAACTC 59.820 43.478 25.26 8.24 0.00 3.01
1894 2139 2.053627 CAAGGTCAAACTTGCGCAATC 58.946 47.619 25.26 0.41 41.09 2.67
1902 2147 0.179067 TCGTCGGCAAGGTCAAACTT 60.179 50.000 0.00 0.00 0.00 2.66
1903 2148 0.034896 ATCGTCGGCAAGGTCAAACT 59.965 50.000 0.00 0.00 0.00 2.66
1904 2149 0.872388 AATCGTCGGCAAGGTCAAAC 59.128 50.000 0.00 0.00 0.00 2.93
1905 2150 1.600023 AAATCGTCGGCAAGGTCAAA 58.400 45.000 0.00 0.00 0.00 2.69
1906 2151 2.459060 TAAATCGTCGGCAAGGTCAA 57.541 45.000 0.00 0.00 0.00 3.18
1908 2153 1.597663 CCATAAATCGTCGGCAAGGTC 59.402 52.381 0.00 0.00 0.00 3.85
1909 2154 1.663695 CCATAAATCGTCGGCAAGGT 58.336 50.000 0.00 0.00 0.00 3.50
1910 2155 0.307760 GCCATAAATCGTCGGCAAGG 59.692 55.000 0.00 0.00 44.25 3.61
1911 2156 3.825812 GCCATAAATCGTCGGCAAG 57.174 52.632 0.00 0.00 44.25 4.01
1919 2164 4.843147 TGACGCAAAATAGCCATAAATCG 58.157 39.130 0.00 0.00 0.00 3.34
1930 2175 7.441890 TTTACCAAGAGATTGACGCAAAATA 57.558 32.000 0.00 0.00 0.00 1.40
1932 2177 5.759506 TTTACCAAGAGATTGACGCAAAA 57.240 34.783 0.00 0.00 0.00 2.44
1937 2182 5.869344 TCTGACATTTACCAAGAGATTGACG 59.131 40.000 0.00 0.00 0.00 4.35
1944 2189 2.932614 CGGCTCTGACATTTACCAAGAG 59.067 50.000 0.00 0.00 0.00 2.85
1955 2200 0.894835 TCAATAGCACGGCTCTGACA 59.105 50.000 1.46 0.00 40.44 3.58
1964 2209 4.188462 TGACTTAACCCATCAATAGCACG 58.812 43.478 0.00 0.00 0.00 5.34
1965 2210 6.095440 ACATTGACTTAACCCATCAATAGCAC 59.905 38.462 0.00 0.00 40.30 4.40
2008 2253 5.712446 TGGCACTAAAGTAATTGGCATGTTA 59.288 36.000 0.00 0.00 39.40 2.41
2016 2261 6.422776 CCACTAGTGGCACTAAAGTAATTG 57.577 41.667 28.48 15.03 44.73 2.32
2048 2293 6.248433 AGACCAATCCACATCATAAACAAGT 58.752 36.000 0.00 0.00 0.00 3.16
2050 2295 5.652014 GGAGACCAATCCACATCATAAACAA 59.348 40.000 0.00 0.00 39.34 2.83
2052 2297 5.192927 TGGAGACCAATCCACATCATAAAC 58.807 41.667 0.00 0.00 44.56 2.01
2098 2349 6.420604 CCGCAGTTTTAAAAAGTTGTGATCAT 59.579 34.615 16.96 0.00 0.00 2.45
2141 2392 3.435275 TGACCACTAGCAGATCAGAGTT 58.565 45.455 0.00 0.00 0.00 3.01
2143 2394 4.099113 TCAATGACCACTAGCAGATCAGAG 59.901 45.833 0.00 0.00 0.00 3.35
2196 2449 8.877864 ATTTTTGACTAGTTCCATGGTATTCA 57.122 30.769 12.58 4.32 0.00 2.57
2207 2462 9.346725 CCAGCTATTCAAATTTTTGACTAGTTC 57.653 33.333 21.54 12.23 45.99 3.01
2261 2516 3.808726 TGTTTCCACAGATTTGCATTTGC 59.191 39.130 0.00 0.00 42.50 3.68
2395 2682 6.166279 TGAATCTACTCATTTCGCTTTCTGT 58.834 36.000 0.00 0.00 0.00 3.41
2430 2717 9.758651 CAATGGCTGTATAATAAGTGTGTACTA 57.241 33.333 0.00 0.00 35.69 1.82
2470 2757 5.292589 GTGATGGTTGGATCAAATGAAATGC 59.707 40.000 0.00 0.00 34.11 3.56
2493 2781 0.944386 GTTGTGATCAGGTGCGTTGT 59.056 50.000 0.00 0.00 0.00 3.32
2599 2887 4.042271 TGGGGTTTAATCAAGGAAGGAC 57.958 45.455 0.00 0.00 0.00 3.85
2615 2996 6.686484 ATTATTTCTTTCTTTGCTTGGGGT 57.314 33.333 0.00 0.00 0.00 4.95
2616 2997 6.595326 GGAATTATTTCTTTCTTTGCTTGGGG 59.405 38.462 0.00 0.00 32.16 4.96
2617 2998 7.118245 GTGGAATTATTTCTTTCTTTGCTTGGG 59.882 37.037 0.00 0.00 32.16 4.12
2635 3016 7.831691 TCTTGAAATTGAAGGTGTGGAATTA 57.168 32.000 0.00 0.00 0.00 1.40
2679 3066 4.632153 ACAGCTACAGTTTTGTACCTGAG 58.368 43.478 13.91 0.07 42.34 3.35
2682 3069 7.012044 CAGTTTTACAGCTACAGTTTTGTACCT 59.988 37.037 0.00 0.00 38.76 3.08
2694 3081 1.389106 CGCCGTCAGTTTTACAGCTAC 59.611 52.381 0.00 0.00 0.00 3.58
2716 3103 1.136695 TGGGACAGTACAAACGTCGTT 59.863 47.619 4.40 4.40 33.06 3.85
2717 3104 0.746063 TGGGACAGTACAAACGTCGT 59.254 50.000 0.00 0.00 33.06 4.34
2718 3105 1.523934 GTTGGGACAGTACAAACGTCG 59.476 52.381 0.00 0.00 42.39 5.12
2719 3106 2.542595 CTGTTGGGACAGTACAAACGTC 59.457 50.000 0.00 0.00 46.57 4.34
2952 3342 4.677151 ACCACCACCTCCCCCTCC 62.677 72.222 0.00 0.00 0.00 4.30
3257 3670 0.179000 GCCATGACAGGTACCAGAGG 59.821 60.000 15.94 9.63 0.00 3.69
3298 3711 0.688487 TACCTGCACACCCAGTAACC 59.312 55.000 0.00 0.00 0.00 2.85
3299 3712 1.346722 AGTACCTGCACACCCAGTAAC 59.653 52.381 0.00 0.00 0.00 2.50
3300 3713 1.346395 CAGTACCTGCACACCCAGTAA 59.654 52.381 0.00 0.00 0.00 2.24
3301 3714 0.973632 CAGTACCTGCACACCCAGTA 59.026 55.000 0.00 0.00 0.00 2.74
3302 3715 1.754745 CAGTACCTGCACACCCAGT 59.245 57.895 0.00 0.00 0.00 4.00
3543 3956 3.716006 CACGCCAGCACCTTGTCG 61.716 66.667 0.00 0.00 0.00 4.35
3612 4025 2.835431 CGCCCGATCTGGTCCTCT 60.835 66.667 4.97 0.00 35.15 3.69
3719 4149 3.508793 AGAAATCAAAGAGACGGACGGTA 59.491 43.478 0.00 0.00 0.00 4.02
3721 4151 2.924290 GAGAAATCAAAGAGACGGACGG 59.076 50.000 0.00 0.00 0.00 4.79
3722 4152 2.924290 GGAGAAATCAAAGAGACGGACG 59.076 50.000 0.00 0.00 0.00 4.79
3723 4153 2.924290 CGGAGAAATCAAAGAGACGGAC 59.076 50.000 0.00 0.00 0.00 4.79
3724 4154 2.094182 CCGGAGAAATCAAAGAGACGGA 60.094 50.000 0.00 0.00 41.13 4.69
3753 4183 5.459762 CACAAAACACAATCATGTCAGTTCC 59.540 40.000 0.00 0.00 37.82 3.62
3771 4211 1.732917 CTTCCCTGCACGCACAAAA 59.267 52.632 0.00 0.00 0.00 2.44
3838 4278 4.070552 GACTTGCGGCTCGGTCCT 62.071 66.667 0.00 0.00 0.00 3.85
3939 4398 0.388649 GTTCGTCTCCATGTCTGCGT 60.389 55.000 0.00 0.00 0.00 5.24
4107 4590 6.742559 TGAAGAGAAAAGTGTAGGTAGGTT 57.257 37.500 0.00 0.00 0.00 3.50
4108 4591 6.936968 ATGAAGAGAAAAGTGTAGGTAGGT 57.063 37.500 0.00 0.00 0.00 3.08
4116 4599 5.006746 GTCGTGTGAATGAAGAGAAAAGTGT 59.993 40.000 0.00 0.00 0.00 3.55
4163 4646 0.036010 AGGGGAGAAACATGAGCACG 60.036 55.000 0.00 0.00 0.00 5.34
4292 4789 4.079672 TGAAGTCTAGGAGTAGAGGGGAAG 60.080 50.000 0.00 0.00 35.87 3.46
4293 4790 3.856813 TGAAGTCTAGGAGTAGAGGGGAA 59.143 47.826 0.00 0.00 35.87 3.97
4294 4791 3.460340 CTGAAGTCTAGGAGTAGAGGGGA 59.540 52.174 0.00 0.00 35.87 4.81
4296 4793 4.080243 TGTCTGAAGTCTAGGAGTAGAGGG 60.080 50.000 0.00 0.00 35.87 4.30
4299 4796 5.013287 ACTGTGTCTGAAGTCTAGGAGTAGA 59.987 44.000 0.00 0.00 32.47 2.59
4305 4802 3.574396 TGGAACTGTGTCTGAAGTCTAGG 59.426 47.826 0.00 0.00 0.00 3.02
4322 4819 4.452455 CAGAGGTTGTGTAATGAGTGGAAC 59.548 45.833 0.00 0.00 0.00 3.62
4323 4820 4.346709 TCAGAGGTTGTGTAATGAGTGGAA 59.653 41.667 0.00 0.00 0.00 3.53
4324 4821 3.901222 TCAGAGGTTGTGTAATGAGTGGA 59.099 43.478 0.00 0.00 0.00 4.02
4325 4822 4.271696 TCAGAGGTTGTGTAATGAGTGG 57.728 45.455 0.00 0.00 0.00 4.00
4326 4823 4.153117 GCTTCAGAGGTTGTGTAATGAGTG 59.847 45.833 0.00 0.00 0.00 3.51
4328 4825 4.573900 AGCTTCAGAGGTTGTGTAATGAG 58.426 43.478 0.00 0.00 0.00 2.90
4329 4826 4.040339 TGAGCTTCAGAGGTTGTGTAATGA 59.960 41.667 0.00 0.00 32.79 2.57
4330 4827 4.318332 TGAGCTTCAGAGGTTGTGTAATG 58.682 43.478 0.00 0.00 32.79 1.90
4331 4828 4.623932 TGAGCTTCAGAGGTTGTGTAAT 57.376 40.909 0.00 0.00 32.79 1.89
4332 4829 4.569943 GATGAGCTTCAGAGGTTGTGTAA 58.430 43.478 0.00 0.00 32.79 2.41
4333 4830 3.367395 CGATGAGCTTCAGAGGTTGTGTA 60.367 47.826 0.00 0.00 32.79 2.90
4334 4831 2.611473 CGATGAGCTTCAGAGGTTGTGT 60.611 50.000 0.00 0.00 32.79 3.72
4335 4832 1.998315 CGATGAGCTTCAGAGGTTGTG 59.002 52.381 0.00 0.00 32.79 3.33
4336 4833 1.620819 ACGATGAGCTTCAGAGGTTGT 59.379 47.619 0.00 0.00 32.79 3.32
4337 4834 2.094286 AGACGATGAGCTTCAGAGGTTG 60.094 50.000 0.00 0.00 32.79 3.77
4348 4845 3.690628 GGATAGGTAGGTAGACGATGAGC 59.309 52.174 0.00 0.00 0.00 4.26
4485 4987 3.013921 GTCAGTCTCGAGTGAGGAATCT 58.986 50.000 13.13 0.00 41.06 2.40
4494 4996 2.784347 TGTCTCATGTCAGTCTCGAGT 58.216 47.619 13.13 0.00 0.00 4.18
4496 4998 2.424956 CCATGTCTCATGTCAGTCTCGA 59.575 50.000 8.57 0.00 0.00 4.04
4517 5019 3.833545 TCTGTTACTCTCTTGCTCGAC 57.166 47.619 0.00 0.00 0.00 4.20
4523 5025 4.974368 ACTCGGATCTGTTACTCTCTTG 57.026 45.455 0.42 0.00 0.00 3.02
4524 5026 5.477291 TGAAACTCGGATCTGTTACTCTCTT 59.523 40.000 0.42 0.00 0.00 2.85
4527 5029 5.010933 TCTGAAACTCGGATCTGTTACTCT 58.989 41.667 0.42 0.00 0.00 3.24
4529 5031 4.082136 GGTCTGAAACTCGGATCTGTTACT 60.082 45.833 0.42 0.00 33.80 2.24
4530 5032 4.082136 AGGTCTGAAACTCGGATCTGTTAC 60.082 45.833 0.42 0.00 41.47 2.50
4538 5041 0.966920 GTCCAGGTCTGAAACTCGGA 59.033 55.000 0.00 0.00 0.00 4.55
4714 5217 3.119096 GCAGGAAACGGCGAGGAC 61.119 66.667 16.62 0.45 42.91 3.85
4789 5296 0.976073 GGGGAGAAGGATGGTGACGA 60.976 60.000 0.00 0.00 0.00 4.20
4790 5297 1.264749 TGGGGAGAAGGATGGTGACG 61.265 60.000 0.00 0.00 0.00 4.35
4797 5308 2.999185 TTTGCTTTGGGGAGAAGGAT 57.001 45.000 0.00 0.00 0.00 3.24
4810 5321 5.221441 GGTCTTCTTGGTTAACCATTTGCTT 60.221 40.000 27.57 0.00 46.97 3.91
4857 5373 6.287589 ACTAGTAGGAAATGAGACACCAAG 57.712 41.667 1.45 0.00 0.00 3.61
4859 5375 4.398358 CGACTAGTAGGAAATGAGACACCA 59.602 45.833 0.00 0.00 0.00 4.17
4860 5376 4.398673 ACGACTAGTAGGAAATGAGACACC 59.601 45.833 7.94 0.00 0.00 4.16
4861 5377 5.564048 ACGACTAGTAGGAAATGAGACAC 57.436 43.478 7.94 0.00 0.00 3.67
4862 5378 6.175471 TGTACGACTAGTAGGAAATGAGACA 58.825 40.000 7.94 0.00 35.72 3.41
4863 5379 6.674694 TGTACGACTAGTAGGAAATGAGAC 57.325 41.667 7.94 0.00 35.72 3.36
4864 5380 6.262496 CCATGTACGACTAGTAGGAAATGAGA 59.738 42.308 17.61 0.00 35.72 3.27
4865 5381 6.262496 TCCATGTACGACTAGTAGGAAATGAG 59.738 42.308 17.61 9.33 35.72 2.90
4915 5432 1.138883 GTCGAGCGGCATGTACTGA 59.861 57.895 1.45 0.00 0.00 3.41
4973 5490 8.092687 GGATTATTATTACCTTTAGGCGTCTGA 58.907 37.037 0.00 0.00 39.32 3.27
4988 5505 8.271458 TCACACTTGGCTGAAGGATTATTATTA 58.729 33.333 1.85 0.00 35.78 0.98
4990 5507 6.662755 TCACACTTGGCTGAAGGATTATTAT 58.337 36.000 1.85 0.00 35.78 1.28
5009 5526 4.338879 TGGTAACCTACTAGGACTCACAC 58.661 47.826 9.28 0.00 37.67 3.82
5014 5531 4.359105 TGCATTGGTAACCTACTAGGACT 58.641 43.478 9.28 0.00 37.67 3.85
5015 5532 4.748277 TGCATTGGTAACCTACTAGGAC 57.252 45.455 9.28 0.00 37.67 3.85
5027 5544 5.455056 AATAACCGTTTGTTGCATTGGTA 57.545 34.783 0.00 0.00 37.83 3.25
5038 5555 6.255887 TGGTTTAGTGCAAAAATAACCGTTTG 59.744 34.615 0.00 0.00 38.24 2.93
5040 5557 5.749588 GTGGTTTAGTGCAAAAATAACCGTT 59.250 36.000 0.00 0.00 38.24 4.44
5042 5559 4.682401 GGTGGTTTAGTGCAAAAATAACCG 59.318 41.667 11.11 0.00 38.24 4.44
5072 5590 2.033424 CCTGTTCATCAGATGCAGCATG 59.967 50.000 14.22 0.08 46.27 4.06
5084 5612 1.487976 TCCATCTGCTCCCTGTTCATC 59.512 52.381 0.00 0.00 0.00 2.92
5126 5655 2.059541 GTACGGTTGAAGACTCTGCAC 58.940 52.381 0.00 0.00 0.00 4.57
5140 5669 1.270678 GGTTGAAGCCAAGAGTACGGT 60.271 52.381 0.00 0.00 32.06 4.83
5141 5670 1.270625 TGGTTGAAGCCAAGAGTACGG 60.271 52.381 0.00 0.00 35.25 4.02
5142 5671 2.163818 TGGTTGAAGCCAAGAGTACG 57.836 50.000 0.00 0.00 35.25 3.67
5143 5672 3.939592 GGTATGGTTGAAGCCAAGAGTAC 59.060 47.826 0.00 0.00 42.48 2.73
5144 5673 3.369052 CGGTATGGTTGAAGCCAAGAGTA 60.369 47.826 0.00 0.00 42.48 2.59
5145 5674 2.615493 CGGTATGGTTGAAGCCAAGAGT 60.615 50.000 0.00 0.00 42.48 3.24
5146 5675 2.009774 CGGTATGGTTGAAGCCAAGAG 58.990 52.381 0.00 0.00 42.48 2.85
5147 5676 1.339631 CCGGTATGGTTGAAGCCAAGA 60.340 52.381 0.00 0.00 42.48 3.02
5148 5677 1.094785 CCGGTATGGTTGAAGCCAAG 58.905 55.000 0.00 0.00 42.48 3.61
5149 5678 0.322997 CCCGGTATGGTTGAAGCCAA 60.323 55.000 0.00 0.00 42.48 4.52
5150 5679 1.301623 CCCGGTATGGTTGAAGCCA 59.698 57.895 0.00 0.00 43.48 4.75
5151 5680 2.119029 GCCCGGTATGGTTGAAGCC 61.119 63.158 0.00 0.00 35.15 4.35
5152 5681 0.963355 TTGCCCGGTATGGTTGAAGC 60.963 55.000 0.00 0.00 35.15 3.86
5153 5682 1.540267 TTTGCCCGGTATGGTTGAAG 58.460 50.000 0.00 0.00 35.15 3.02
5154 5683 2.223803 ATTTGCCCGGTATGGTTGAA 57.776 45.000 0.00 0.00 35.15 2.69
5171 5700 9.362539 CTTTGAAAAGCATCATAGCAAAGTATT 57.637 29.630 0.00 0.00 37.20 1.89
5254 5783 1.336755 CGGCTTGCTTTGTACAAACCT 59.663 47.619 17.01 0.00 32.26 3.50
5285 5815 5.944599 TGCCTACCTAGCTATGTATCTACAC 59.055 44.000 9.03 0.00 39.30 2.90
5327 5857 1.896220 AATGTGTTGCGATCCACAGT 58.104 45.000 8.24 3.44 44.13 3.55
5337 5867 7.746475 GTGAAAGTATTCTGTCTAATGTGTTGC 59.254 37.037 0.00 0.00 36.48 4.17
5447 5977 0.534873 TCGACGAGGGCATTCATTCA 59.465 50.000 0.00 0.00 0.00 2.57
5448 5978 1.651987 TTCGACGAGGGCATTCATTC 58.348 50.000 0.00 0.00 0.00 2.67
5449 5979 1.737793 GTTTCGACGAGGGCATTCATT 59.262 47.619 0.00 0.00 0.00 2.57
5450 5980 1.338674 TGTTTCGACGAGGGCATTCAT 60.339 47.619 0.00 0.00 0.00 2.57
5462 5992 3.837570 AAGCCCCCGGTGTTTCGAC 62.838 63.158 0.00 0.00 0.00 4.20
5466 5996 1.262417 CAATAAAGCCCCCGGTGTTT 58.738 50.000 0.00 0.00 0.00 2.83
5483 6013 7.977789 ACAACAGTATTGATACATGTCACAA 57.022 32.000 16.19 16.19 35.74 3.33
5589 6127 2.173669 CACATCATGGACCCGTCGC 61.174 63.158 0.00 0.00 0.00 5.19
5694 6332 9.558396 TTTTGACCATTTTAGAAATGAAATGCT 57.442 25.926 13.42 0.00 40.30 3.79
5734 6372 3.576648 CGTGGTCTCTTTCCTCTTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
5823 6461 2.222445 AGTGTCGTCGCCATTTGTTTAC 59.778 45.455 0.00 0.00 0.00 2.01
5875 6514 6.782494 ACTGGGAAAGTGGATATTTCTTTTGT 59.218 34.615 0.00 0.00 37.88 2.83
5912 6551 2.062971 TCTACGGGCTGGTAGTTAGG 57.937 55.000 13.32 0.00 40.58 2.69
5940 6579 5.139001 TGTTATATTCAATCCATGCAGCCA 58.861 37.500 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.