Multiple sequence alignment - TraesCS7B01G387000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G387000 chr7B 100.000 2453 0 0 1 2453 653015234 653012782 0.000000e+00 4530
1 TraesCS7B01G387000 chr7A 94.346 2087 100 8 1 2082 675234564 675236637 0.000000e+00 3184
2 TraesCS7B01G387000 chr7A 88.235 255 20 9 2076 2328 5188534 5188780 1.840000e-76 296
3 TraesCS7B01G387000 chr7D 94.011 2087 86 11 1 2082 584851287 584849235 0.000000e+00 3125
4 TraesCS7B01G387000 chr6B 91.200 250 14 7 2079 2327 567881541 567881783 1.410000e-87 333
5 TraesCS7B01G387000 chr2B 91.739 230 15 3 2099 2327 23378702 23378476 1.420000e-82 316
6 TraesCS7B01G387000 chr2A 91.379 232 14 5 2099 2328 617761459 617761232 1.830000e-81 313
7 TraesCS7B01G387000 chr5A 90.870 230 17 4 2099 2327 90623189 90622963 3.060000e-79 305
8 TraesCS7B01G387000 chr5A 90.558 233 18 3 2096 2327 536150065 536150294 3.060000e-79 305
9 TraesCS7B01G387000 chr4B 90.213 235 19 4 2096 2329 138301126 138301357 1.100000e-78 303
10 TraesCS7B01G387000 chr5B 90.213 235 18 4 2099 2331 462292082 462291851 3.960000e-78 302
11 TraesCS7B01G387000 chr1A 90.171 234 19 3 2096 2328 287684688 287684918 3.960000e-78 302


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G387000 chr7B 653012782 653015234 2452 True 4530 4530 100.000 1 2453 1 chr7B.!!$R1 2452
1 TraesCS7B01G387000 chr7A 675234564 675236637 2073 False 3184 3184 94.346 1 2082 1 chr7A.!!$F2 2081
2 TraesCS7B01G387000 chr7D 584849235 584851287 2052 True 3125 3125 94.011 1 2082 1 chr7D.!!$R1 2081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 998 0.305922 GCAGAGCGCACCATGTTATC 59.694 55.0 11.47 0.0 41.79 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 2415 0.098552 CGATGCACCAAATAGCGCAA 59.901 50.0 11.47 0.0 38.01 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 1.129437 GAGACGTTCATGCCTTTCTGC 59.871 52.381 0.00 0.00 0.00 4.26
278 279 5.401531 TGTAAACCTCATACTGACTCCAC 57.598 43.478 0.00 0.00 0.00 4.02
293 294 8.181904 ACTGACTCCACATCATTTACAAAAAT 57.818 30.769 0.00 0.00 35.65 1.82
420 421 8.834004 ATGTATACTACTGGACAAAGTTAGGA 57.166 34.615 4.17 0.00 0.00 2.94
466 467 4.274950 ACGAGGATATAAATTGCAAACGGG 59.725 41.667 1.71 0.00 0.00 5.28
568 569 8.752254 CAAATATAGATATGTACCCATTACGCG 58.248 37.037 3.53 3.53 32.71 6.01
804 806 6.969473 GCAACTATGAATGGCTTTACTTTCTC 59.031 38.462 0.00 0.00 0.00 2.87
816 818 4.478206 TTACTTTCTCCAGCATCTCCTG 57.522 45.455 0.00 0.00 0.00 3.86
854 856 6.169800 GGCTTCTCCTCAATATCAGGATTAC 58.830 44.000 4.23 0.00 39.44 1.89
905 907 4.098349 ACTCAATCTGCACACACAAACATT 59.902 37.500 0.00 0.00 0.00 2.71
996 998 0.305922 GCAGAGCGCACCATGTTATC 59.694 55.000 11.47 0.00 41.79 1.75
1007 1009 5.580691 CGCACCATGTTATCGGTATGAATAT 59.419 40.000 0.00 0.00 32.98 1.28
1011 1013 7.009265 CACCATGTTATCGGTATGAATATCGTC 59.991 40.741 3.12 0.00 38.04 4.20
1019 1021 4.378563 CGGTATGAATATCGTCGAGAAGCT 60.379 45.833 0.00 0.00 32.49 3.74
1020 1022 5.462405 GGTATGAATATCGTCGAGAAGCTT 58.538 41.667 0.00 0.00 0.00 3.74
1026 1028 7.371159 TGAATATCGTCGAGAAGCTTATCATT 58.629 34.615 20.33 11.04 0.00 2.57
1027 1029 7.539022 TGAATATCGTCGAGAAGCTTATCATTC 59.461 37.037 20.33 18.14 0.00 2.67
1028 1030 4.902443 TCGTCGAGAAGCTTATCATTCT 57.098 40.909 20.33 2.26 38.46 2.40
1029 1031 4.849883 TCGTCGAGAAGCTTATCATTCTC 58.150 43.478 20.33 10.83 45.18 2.87
1033 1035 3.658709 GAGAAGCTTATCATTCTCCGGG 58.341 50.000 16.08 0.00 43.65 5.73
1035 1037 3.456277 AGAAGCTTATCATTCTCCGGGTT 59.544 43.478 0.00 0.00 29.80 4.11
1099 1101 3.744940 ATCTTCATTTTCTCAGGCCCA 57.255 42.857 0.00 0.00 0.00 5.36
1129 1131 0.737367 CGAGTTTCTCGCCATCAGCA 60.737 55.000 6.24 0.00 46.75 4.41
1146 1148 3.087031 CAGCATTGTCACCCAAGAAGAT 58.913 45.455 0.00 0.00 36.25 2.40
1154 1156 4.104738 TGTCACCCAAGAAGATCTTTTCCT 59.895 41.667 9.87 0.00 33.78 3.36
1162 1164 3.999663 AGAAGATCTTTTCCTGCTCGTTG 59.000 43.478 9.87 0.00 0.00 4.10
1295 1300 2.361610 CCTCCTGTGGCGCCAATT 60.362 61.111 34.66 0.00 0.00 2.32
1340 1345 2.751837 CCGGAGCTTTCCTTGCCC 60.752 66.667 0.00 0.00 0.00 5.36
1342 1347 2.440599 GGAGCTTTCCTTGCCCCA 59.559 61.111 0.00 0.00 0.00 4.96
1345 1350 2.282180 GCTTTCCTTGCCCCACGA 60.282 61.111 0.00 0.00 0.00 4.35
1463 1468 1.001631 TCGGATGAGGAGGAGGCAA 59.998 57.895 0.00 0.00 0.00 4.52
1723 1728 1.037493 CATTGTCGTCCTCGGGGATA 58.963 55.000 7.65 0.00 44.33 2.59
1726 1731 2.203451 TCGTCCTCGGGGATAGGC 60.203 66.667 7.65 0.00 44.33 3.93
1927 1932 0.776479 TGGTGGTGGGGATGGGTTTA 60.776 55.000 0.00 0.00 0.00 2.01
1928 1933 0.033503 GGTGGTGGGGATGGGTTTAG 60.034 60.000 0.00 0.00 0.00 1.85
1997 2003 4.729918 CTGTGGAGTGGGGCCTGC 62.730 72.222 0.84 0.00 0.00 4.85
2000 2006 3.506743 TGGAGTGGGGCCTGCAAA 61.507 61.111 0.84 0.00 29.10 3.68
2024 2030 0.381445 TTCGATCCGGCGTAAATCGA 59.619 50.000 25.16 25.16 46.75 3.59
2032 2038 3.825812 GCGTAAATCGAGGCCATTG 57.174 52.632 5.01 0.00 42.86 2.82
2043 2049 1.767681 GAGGCCATTGGATCTCAGTCT 59.232 52.381 5.01 0.00 0.00 3.24
2048 2054 3.072184 GCCATTGGATCTCAGTCTATGGT 59.928 47.826 6.95 0.00 35.06 3.55
2075 2081 0.813184 TAGCCGTCCGATCTTCGTTT 59.187 50.000 0.00 0.00 38.40 3.60
2082 2088 3.114065 GTCCGATCTTCGTTTTCGCTAT 58.886 45.455 0.00 0.00 43.73 2.97
2083 2089 3.550678 GTCCGATCTTCGTTTTCGCTATT 59.449 43.478 0.00 0.00 43.73 1.73
2084 2090 3.795101 TCCGATCTTCGTTTTCGCTATTC 59.205 43.478 0.00 0.00 43.73 1.75
2085 2091 3.060473 CCGATCTTCGTTTTCGCTATTCC 60.060 47.826 0.00 0.00 43.73 3.01
2086 2092 3.060473 CGATCTTCGTTTTCGCTATTCCC 60.060 47.826 0.00 0.00 43.73 3.97
2087 2093 2.624636 TCTTCGTTTTCGCTATTCCCC 58.375 47.619 0.00 0.00 43.73 4.81
2088 2094 2.235402 TCTTCGTTTTCGCTATTCCCCT 59.765 45.455 0.00 0.00 43.73 4.79
2089 2095 2.773993 TCGTTTTCGCTATTCCCCTT 57.226 45.000 0.00 0.00 43.73 3.95
2090 2096 2.624636 TCGTTTTCGCTATTCCCCTTC 58.375 47.619 0.00 0.00 43.73 3.46
2091 2097 1.669265 CGTTTTCGCTATTCCCCTTCC 59.331 52.381 0.00 0.00 36.22 3.46
2092 2098 2.718563 GTTTTCGCTATTCCCCTTCCA 58.281 47.619 0.00 0.00 0.00 3.53
2093 2099 3.288092 GTTTTCGCTATTCCCCTTCCAT 58.712 45.455 0.00 0.00 0.00 3.41
2094 2100 2.930826 TTCGCTATTCCCCTTCCATC 57.069 50.000 0.00 0.00 0.00 3.51
2095 2101 2.103153 TCGCTATTCCCCTTCCATCT 57.897 50.000 0.00 0.00 0.00 2.90
2096 2102 1.971357 TCGCTATTCCCCTTCCATCTC 59.029 52.381 0.00 0.00 0.00 2.75
2097 2103 1.694150 CGCTATTCCCCTTCCATCTCA 59.306 52.381 0.00 0.00 0.00 3.27
2098 2104 2.104792 CGCTATTCCCCTTCCATCTCAA 59.895 50.000 0.00 0.00 0.00 3.02
2099 2105 3.244700 CGCTATTCCCCTTCCATCTCAAT 60.245 47.826 0.00 0.00 0.00 2.57
2100 2106 4.331108 GCTATTCCCCTTCCATCTCAATC 58.669 47.826 0.00 0.00 0.00 2.67
2101 2107 4.042684 GCTATTCCCCTTCCATCTCAATCT 59.957 45.833 0.00 0.00 0.00 2.40
2102 2108 4.720775 ATTCCCCTTCCATCTCAATCTC 57.279 45.455 0.00 0.00 0.00 2.75
2103 2109 3.428063 TCCCCTTCCATCTCAATCTCT 57.572 47.619 0.00 0.00 0.00 3.10
2104 2110 4.559576 TCCCCTTCCATCTCAATCTCTA 57.440 45.455 0.00 0.00 0.00 2.43
2105 2111 5.098575 TCCCCTTCCATCTCAATCTCTAT 57.901 43.478 0.00 0.00 0.00 1.98
2106 2112 6.233045 TCCCCTTCCATCTCAATCTCTATA 57.767 41.667 0.00 0.00 0.00 1.31
2107 2113 6.259893 TCCCCTTCCATCTCAATCTCTATAG 58.740 44.000 0.00 0.00 0.00 1.31
2108 2114 5.424895 CCCCTTCCATCTCAATCTCTATAGG 59.575 48.000 0.00 0.00 0.00 2.57
2109 2115 5.104982 CCCTTCCATCTCAATCTCTATAGGC 60.105 48.000 0.00 0.00 0.00 3.93
2110 2116 5.104982 CCTTCCATCTCAATCTCTATAGGCC 60.105 48.000 0.00 0.00 0.00 5.19
2111 2117 5.282436 TCCATCTCAATCTCTATAGGCCT 57.718 43.478 11.78 11.78 0.00 5.19
2112 2118 6.408770 TCCATCTCAATCTCTATAGGCCTA 57.591 41.667 16.60 16.60 0.00 3.93
2113 2119 6.805150 TCCATCTCAATCTCTATAGGCCTAA 58.195 40.000 18.42 0.00 0.00 2.69
2114 2120 7.425834 TCCATCTCAATCTCTATAGGCCTAAT 58.574 38.462 18.42 8.20 0.00 1.73
2115 2121 7.344093 TCCATCTCAATCTCTATAGGCCTAATG 59.656 40.741 18.42 12.58 0.00 1.90
2116 2122 6.537453 TCTCAATCTCTATAGGCCTAATGC 57.463 41.667 18.42 0.00 40.16 3.56
2117 2123 5.126222 TCTCAATCTCTATAGGCCTAATGCG 59.874 44.000 18.42 7.75 42.61 4.73
2118 2124 4.772624 TCAATCTCTATAGGCCTAATGCGT 59.227 41.667 18.42 1.73 42.61 5.24
2119 2125 5.246203 TCAATCTCTATAGGCCTAATGCGTT 59.754 40.000 18.42 0.89 42.61 4.84
2120 2126 5.746990 ATCTCTATAGGCCTAATGCGTTT 57.253 39.130 18.42 0.05 42.61 3.60
2121 2127 5.546621 TCTCTATAGGCCTAATGCGTTTT 57.453 39.130 18.42 0.00 42.61 2.43
2122 2128 5.925509 TCTCTATAGGCCTAATGCGTTTTT 58.074 37.500 18.42 0.00 42.61 1.94
2123 2129 5.989777 TCTCTATAGGCCTAATGCGTTTTTC 59.010 40.000 18.42 0.00 42.61 2.29
2124 2130 5.676552 TCTATAGGCCTAATGCGTTTTTCA 58.323 37.500 18.42 0.00 42.61 2.69
2125 2131 6.116806 TCTATAGGCCTAATGCGTTTTTCAA 58.883 36.000 18.42 0.00 42.61 2.69
2126 2132 3.575965 AGGCCTAATGCGTTTTTCAAG 57.424 42.857 1.29 0.00 42.61 3.02
2127 2133 2.231235 AGGCCTAATGCGTTTTTCAAGG 59.769 45.455 1.29 0.00 42.61 3.61
2128 2134 2.029380 GGCCTAATGCGTTTTTCAAGGT 60.029 45.455 0.00 0.00 42.61 3.50
2129 2135 3.554129 GGCCTAATGCGTTTTTCAAGGTT 60.554 43.478 0.00 0.00 42.61 3.50
2130 2136 4.321378 GGCCTAATGCGTTTTTCAAGGTTA 60.321 41.667 0.00 0.00 42.61 2.85
2131 2137 5.224135 GCCTAATGCGTTTTTCAAGGTTAA 58.776 37.500 0.00 0.00 0.00 2.01
2132 2138 5.867174 GCCTAATGCGTTTTTCAAGGTTAAT 59.133 36.000 0.00 0.00 0.00 1.40
2133 2139 6.367695 GCCTAATGCGTTTTTCAAGGTTAATT 59.632 34.615 0.00 0.00 0.00 1.40
2134 2140 7.095397 GCCTAATGCGTTTTTCAAGGTTAATTT 60.095 33.333 0.00 0.00 0.00 1.82
2135 2141 8.769891 CCTAATGCGTTTTTCAAGGTTAATTTT 58.230 29.630 0.00 0.00 0.00 1.82
2136 2142 9.579610 CTAATGCGTTTTTCAAGGTTAATTTTG 57.420 29.630 0.00 0.00 0.00 2.44
2137 2143 7.778470 ATGCGTTTTTCAAGGTTAATTTTGA 57.222 28.000 1.72 1.72 0.00 2.69
2138 2144 6.994992 TGCGTTTTTCAAGGTTAATTTTGAC 58.005 32.000 4.62 0.00 33.36 3.18
2139 2145 6.036191 TGCGTTTTTCAAGGTTAATTTTGACC 59.964 34.615 4.62 0.00 37.11 4.02
2140 2146 6.036191 GCGTTTTTCAAGGTTAATTTTGACCA 59.964 34.615 6.97 0.00 39.14 4.02
2141 2147 7.413109 GCGTTTTTCAAGGTTAATTTTGACCAA 60.413 33.333 6.97 0.00 39.14 3.67
2142 2148 8.443937 CGTTTTTCAAGGTTAATTTTGACCAAA 58.556 29.630 6.97 0.00 39.14 3.28
2145 2151 9.454859 TTTTCAAGGTTAATTTTGACCAAATGT 57.545 25.926 6.97 0.00 39.14 2.71
2146 2152 9.454859 TTTCAAGGTTAATTTTGACCAAATGTT 57.545 25.926 6.97 0.00 39.14 2.71
2148 2154 9.757227 TCAAGGTTAATTTTGACCAAATGTTAG 57.243 29.630 6.97 0.00 39.14 2.34
2149 2155 9.757227 CAAGGTTAATTTTGACCAAATGTTAGA 57.243 29.630 6.97 0.00 39.14 2.10
2150 2156 9.981114 AAGGTTAATTTTGACCAAATGTTAGAG 57.019 29.630 6.97 0.00 39.14 2.43
2151 2157 8.088365 AGGTTAATTTTGACCAAATGTTAGAGC 58.912 33.333 6.97 0.00 39.14 4.09
2152 2158 7.870445 GGTTAATTTTGACCAAATGTTAGAGCA 59.130 33.333 0.00 0.00 36.86 4.26
2153 2159 9.255304 GTTAATTTTGACCAAATGTTAGAGCAA 57.745 29.630 0.00 0.00 35.09 3.91
2154 2160 9.995003 TTAATTTTGACCAAATGTTAGAGCAAT 57.005 25.926 0.00 0.00 35.09 3.56
2156 2162 9.995003 AATTTTGACCAAATGTTAGAGCAATAA 57.005 25.926 0.00 0.00 35.09 1.40
2169 2175 9.723601 TGTTAGAGCAATAATATATGACATGCA 57.276 29.630 10.78 0.00 34.89 3.96
2172 2178 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
2173 2179 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
2183 2189 5.956068 TGACATGCAACTTACATAAAGCA 57.044 34.783 0.00 0.00 38.93 3.91
2184 2190 6.513806 TGACATGCAACTTACATAAAGCAT 57.486 33.333 0.00 0.00 42.82 3.79
2185 2191 7.622893 TGACATGCAACTTACATAAAGCATA 57.377 32.000 0.00 0.00 40.38 3.14
2186 2192 7.471721 TGACATGCAACTTACATAAAGCATAC 58.528 34.615 0.00 0.00 40.38 2.39
2187 2193 6.795399 ACATGCAACTTACATAAAGCATACC 58.205 36.000 0.00 0.00 40.38 2.73
2188 2194 5.478233 TGCAACTTACATAAAGCATACCG 57.522 39.130 0.00 0.00 38.93 4.02
2189 2195 4.938832 TGCAACTTACATAAAGCATACCGT 59.061 37.500 0.00 0.00 38.93 4.83
2190 2196 5.064198 TGCAACTTACATAAAGCATACCGTC 59.936 40.000 0.00 0.00 38.93 4.79
2191 2197 5.064198 GCAACTTACATAAAGCATACCGTCA 59.936 40.000 0.00 0.00 38.93 4.35
2192 2198 6.402766 GCAACTTACATAAAGCATACCGTCAA 60.403 38.462 0.00 0.00 38.93 3.18
2193 2199 7.523219 CAACTTACATAAAGCATACCGTCAAA 58.477 34.615 0.00 0.00 38.93 2.69
2194 2200 7.068692 ACTTACATAAAGCATACCGTCAAAC 57.931 36.000 0.00 0.00 38.93 2.93
2195 2201 6.877322 ACTTACATAAAGCATACCGTCAAACT 59.123 34.615 0.00 0.00 38.93 2.66
2196 2202 5.796350 ACATAAAGCATACCGTCAAACTC 57.204 39.130 0.00 0.00 0.00 3.01
2197 2203 4.328983 ACATAAAGCATACCGTCAAACTCG 59.671 41.667 0.00 0.00 0.00 4.18
2198 2204 2.450609 AAGCATACCGTCAAACTCGT 57.549 45.000 0.00 0.00 0.00 4.18
2199 2205 3.581024 AAGCATACCGTCAAACTCGTA 57.419 42.857 0.00 0.00 0.00 3.43
2200 2206 3.795623 AGCATACCGTCAAACTCGTAT 57.204 42.857 0.00 0.00 0.00 3.06
2201 2207 3.444916 AGCATACCGTCAAACTCGTATG 58.555 45.455 0.00 0.00 0.00 2.39
2202 2208 2.034001 GCATACCGTCAAACTCGTATGC 60.034 50.000 13.41 13.41 38.96 3.14
2203 2209 1.898938 TACCGTCAAACTCGTATGCG 58.101 50.000 0.00 0.00 39.92 4.73
2204 2210 0.241749 ACCGTCAAACTCGTATGCGA 59.758 50.000 5.60 5.60 45.79 5.10
2214 2220 5.668558 AACTCGTATGCGAAAAGAGTTTT 57.331 34.783 7.45 0.00 46.23 2.43
2215 2221 5.676953 AACTCGTATGCGAAAAGAGTTTTC 58.323 37.500 7.45 2.60 46.23 2.29
2216 2222 5.235616 AACTCGTATGCGAAAAGAGTTTTCA 59.764 36.000 7.45 0.00 46.23 2.69
2217 2223 6.238266 AACTCGTATGCGAAAAGAGTTTTCAA 60.238 34.615 7.45 1.32 46.23 2.69
2218 2224 7.519970 AACTCGTATGCGAAAAGAGTTTTCAAT 60.520 33.333 7.45 7.42 46.23 2.57
2249 2255 8.780846 AATTTTCACATTATGCATTGTCATGT 57.219 26.923 3.54 6.11 32.28 3.21
2250 2256 9.872721 AATTTTCACATTATGCATTGTCATGTA 57.127 25.926 3.54 0.00 32.28 2.29
2251 2257 8.686397 TTTTCACATTATGCATTGTCATGTAC 57.314 30.769 3.54 0.00 32.28 2.90
2252 2258 7.628769 TTCACATTATGCATTGTCATGTACT 57.371 32.000 3.54 0.00 32.28 2.73
2253 2259 8.729805 TTCACATTATGCATTGTCATGTACTA 57.270 30.769 3.54 0.00 32.28 1.82
2254 2260 8.907222 TCACATTATGCATTGTCATGTACTAT 57.093 30.769 3.54 0.00 32.28 2.12
2255 2261 9.341078 TCACATTATGCATTGTCATGTACTATT 57.659 29.630 3.54 0.00 32.28 1.73
2284 2290 8.815141 TTTGTCAATTGTCAAATATGGTCTTG 57.185 30.769 21.72 0.00 30.47 3.02
2285 2291 7.757941 TGTCAATTGTCAAATATGGTCTTGA 57.242 32.000 5.13 0.00 0.00 3.02
2286 2292 8.175925 TGTCAATTGTCAAATATGGTCTTGAA 57.824 30.769 5.13 0.00 33.52 2.69
2287 2293 8.637099 TGTCAATTGTCAAATATGGTCTTGAAA 58.363 29.630 5.13 0.00 33.52 2.69
2288 2294 9.474920 GTCAATTGTCAAATATGGTCTTGAAAA 57.525 29.630 5.13 0.00 34.18 2.29
2291 2297 7.922505 TTGTCAAATATGGTCTTGAAAAACG 57.077 32.000 0.00 0.00 33.52 3.60
2292 2298 5.918011 TGTCAAATATGGTCTTGAAAAACGC 59.082 36.000 0.00 0.00 33.52 4.84
2293 2299 6.149633 GTCAAATATGGTCTTGAAAAACGCT 58.850 36.000 0.00 0.00 33.52 5.07
2294 2300 6.640907 GTCAAATATGGTCTTGAAAAACGCTT 59.359 34.615 0.00 0.00 33.52 4.68
2295 2301 7.169140 GTCAAATATGGTCTTGAAAAACGCTTT 59.831 33.333 0.00 0.00 33.52 3.51
2296 2302 8.353684 TCAAATATGGTCTTGAAAAACGCTTTA 58.646 29.630 0.00 0.00 0.00 1.85
2297 2303 8.638565 CAAATATGGTCTTGAAAAACGCTTTAG 58.361 33.333 0.00 0.00 0.00 1.85
2298 2304 4.561735 TGGTCTTGAAAAACGCTTTAGG 57.438 40.909 0.00 0.00 0.00 2.69
2299 2305 3.243267 TGGTCTTGAAAAACGCTTTAGGC 60.243 43.478 0.00 0.00 37.64 3.93
2300 2306 3.305964 GTCTTGAAAAACGCTTTAGGCC 58.694 45.455 0.00 0.00 37.74 5.19
2301 2307 2.295070 TCTTGAAAAACGCTTTAGGCCC 59.705 45.455 0.00 0.00 37.74 5.80
2302 2308 1.989706 TGAAAAACGCTTTAGGCCCT 58.010 45.000 0.00 0.00 37.74 5.19
2303 2309 3.143211 TGAAAAACGCTTTAGGCCCTA 57.857 42.857 0.00 0.00 37.74 3.53
2304 2310 3.692690 TGAAAAACGCTTTAGGCCCTAT 58.307 40.909 0.00 0.00 37.74 2.57
2305 2311 4.846040 TGAAAAACGCTTTAGGCCCTATA 58.154 39.130 0.00 0.00 37.74 1.31
2306 2312 5.442391 TGAAAAACGCTTTAGGCCCTATAT 58.558 37.500 0.00 0.00 37.74 0.86
2307 2313 6.593807 TGAAAAACGCTTTAGGCCCTATATA 58.406 36.000 0.00 0.00 37.74 0.86
2308 2314 7.228590 TGAAAAACGCTTTAGGCCCTATATAT 58.771 34.615 0.00 0.00 37.74 0.86
2309 2315 8.377034 TGAAAAACGCTTTAGGCCCTATATATA 58.623 33.333 0.00 0.00 37.74 0.86
2310 2316 8.788325 AAAAACGCTTTAGGCCCTATATATAG 57.212 34.615 12.18 12.18 37.74 1.31
2311 2317 7.729124 AAACGCTTTAGGCCCTATATATAGA 57.271 36.000 19.51 0.00 37.74 1.98
2312 2318 7.916077 AACGCTTTAGGCCCTATATATAGAT 57.084 36.000 19.51 6.64 37.74 1.98
2313 2319 7.291411 ACGCTTTAGGCCCTATATATAGATG 57.709 40.000 19.51 11.71 37.74 2.90
2314 2320 6.267928 ACGCTTTAGGCCCTATATATAGATGG 59.732 42.308 19.51 14.07 37.74 3.51
2315 2321 6.493802 CGCTTTAGGCCCTATATATAGATGGA 59.506 42.308 19.51 0.47 37.74 3.41
2316 2322 7.015292 CGCTTTAGGCCCTATATATAGATGGAA 59.985 40.741 19.51 5.87 37.74 3.53
2317 2323 8.371699 GCTTTAGGCCCTATATATAGATGGAAG 58.628 40.741 19.51 14.73 31.56 3.46
2318 2324 8.798975 TTTAGGCCCTATATATAGATGGAAGG 57.201 38.462 19.51 12.22 32.05 3.46
2319 2325 6.629950 AGGCCCTATATATAGATGGAAGGA 57.370 41.667 19.51 0.00 32.05 3.36
2320 2326 6.629156 AGGCCCTATATATAGATGGAAGGAG 58.371 44.000 19.51 1.54 32.05 3.69
2321 2327 5.782845 GGCCCTATATATAGATGGAAGGAGG 59.217 48.000 19.51 10.39 32.05 4.30
2322 2328 5.782845 GCCCTATATATAGATGGAAGGAGGG 59.217 48.000 19.51 12.22 42.44 4.30
2323 2329 6.413325 GCCCTATATATAGATGGAAGGAGGGA 60.413 46.154 19.51 0.00 42.19 4.20
2324 2330 7.245292 CCCTATATATAGATGGAAGGAGGGAG 58.755 46.154 19.51 0.00 42.19 4.30
2325 2331 7.146851 CCCTATATATAGATGGAAGGAGGGAGT 60.147 44.444 19.51 0.00 42.19 3.85
2326 2332 8.961134 CCTATATATAGATGGAAGGAGGGAGTA 58.039 40.741 19.51 0.00 32.05 2.59
2328 2334 6.996876 ATATAGATGGAAGGAGGGAGTAGA 57.003 41.667 0.00 0.00 0.00 2.59
2329 2335 5.688220 ATAGATGGAAGGAGGGAGTAGAA 57.312 43.478 0.00 0.00 0.00 2.10
2330 2336 3.922375 AGATGGAAGGAGGGAGTAGAAG 58.078 50.000 0.00 0.00 0.00 2.85
2331 2337 3.533907 AGATGGAAGGAGGGAGTAGAAGA 59.466 47.826 0.00 0.00 0.00 2.87
2332 2338 4.171841 AGATGGAAGGAGGGAGTAGAAGAT 59.828 45.833 0.00 0.00 0.00 2.40
2333 2339 4.354208 TGGAAGGAGGGAGTAGAAGATT 57.646 45.455 0.00 0.00 0.00 2.40
2334 2340 4.699994 TGGAAGGAGGGAGTAGAAGATTT 58.300 43.478 0.00 0.00 0.00 2.17
2335 2341 4.471386 TGGAAGGAGGGAGTAGAAGATTTG 59.529 45.833 0.00 0.00 0.00 2.32
2336 2342 4.717280 GGAAGGAGGGAGTAGAAGATTTGA 59.283 45.833 0.00 0.00 0.00 2.69
2337 2343 5.163353 GGAAGGAGGGAGTAGAAGATTTGAG 60.163 48.000 0.00 0.00 0.00 3.02
2338 2344 5.213868 AGGAGGGAGTAGAAGATTTGAGA 57.786 43.478 0.00 0.00 0.00 3.27
2339 2345 5.208121 AGGAGGGAGTAGAAGATTTGAGAG 58.792 45.833 0.00 0.00 0.00 3.20
2340 2346 4.202212 GGAGGGAGTAGAAGATTTGAGAGC 60.202 50.000 0.00 0.00 0.00 4.09
2341 2347 3.383185 AGGGAGTAGAAGATTTGAGAGCG 59.617 47.826 0.00 0.00 0.00 5.03
2342 2348 3.381908 GGGAGTAGAAGATTTGAGAGCGA 59.618 47.826 0.00 0.00 0.00 4.93
2343 2349 4.038642 GGGAGTAGAAGATTTGAGAGCGAT 59.961 45.833 0.00 0.00 0.00 4.58
2344 2350 5.241949 GGGAGTAGAAGATTTGAGAGCGATA 59.758 44.000 0.00 0.00 0.00 2.92
2345 2351 6.071616 GGGAGTAGAAGATTTGAGAGCGATAT 60.072 42.308 0.00 0.00 0.00 1.63
2346 2352 7.375053 GGAGTAGAAGATTTGAGAGCGATATT 58.625 38.462 0.00 0.00 0.00 1.28
2347 2353 7.540745 GGAGTAGAAGATTTGAGAGCGATATTC 59.459 40.741 0.00 0.00 0.00 1.75
2348 2354 7.375053 AGTAGAAGATTTGAGAGCGATATTCC 58.625 38.462 0.00 0.00 0.00 3.01
2349 2355 6.166984 AGAAGATTTGAGAGCGATATTCCA 57.833 37.500 0.00 0.00 0.00 3.53
2350 2356 5.988561 AGAAGATTTGAGAGCGATATTCCAC 59.011 40.000 0.00 0.00 0.00 4.02
2351 2357 5.543507 AGATTTGAGAGCGATATTCCACT 57.456 39.130 0.00 0.00 0.00 4.00
2352 2358 5.923204 AGATTTGAGAGCGATATTCCACTT 58.077 37.500 0.00 0.00 0.00 3.16
2353 2359 6.352516 AGATTTGAGAGCGATATTCCACTTT 58.647 36.000 0.00 0.00 0.00 2.66
2354 2360 7.500992 AGATTTGAGAGCGATATTCCACTTTA 58.499 34.615 0.00 0.00 0.00 1.85
2355 2361 7.987458 AGATTTGAGAGCGATATTCCACTTTAA 59.013 33.333 0.00 0.00 0.00 1.52
2356 2362 6.903883 TTGAGAGCGATATTCCACTTTAAC 57.096 37.500 0.00 0.00 0.00 2.01
2357 2363 5.041287 TGAGAGCGATATTCCACTTTAACG 58.959 41.667 0.00 0.00 0.00 3.18
2358 2364 5.007385 AGAGCGATATTCCACTTTAACGT 57.993 39.130 0.00 0.00 0.00 3.99
2359 2365 6.140303 AGAGCGATATTCCACTTTAACGTA 57.860 37.500 0.00 0.00 0.00 3.57
2360 2366 6.746120 AGAGCGATATTCCACTTTAACGTAT 58.254 36.000 0.00 0.00 0.00 3.06
2361 2367 6.641314 AGAGCGATATTCCACTTTAACGTATG 59.359 38.462 0.00 0.00 0.00 2.39
2362 2368 5.694910 AGCGATATTCCACTTTAACGTATGG 59.305 40.000 0.00 0.00 0.00 2.74
2363 2369 5.464389 GCGATATTCCACTTTAACGTATGGT 59.536 40.000 0.00 0.00 33.67 3.55
2364 2370 6.346359 GCGATATTCCACTTTAACGTATGGTC 60.346 42.308 0.00 0.00 33.67 4.02
2365 2371 6.698329 CGATATTCCACTTTAACGTATGGTCA 59.302 38.462 0.00 0.00 33.67 4.02
2366 2372 7.306399 CGATATTCCACTTTAACGTATGGTCAC 60.306 40.741 0.00 0.00 33.67 3.67
2367 2373 4.877378 TCCACTTTAACGTATGGTCACT 57.123 40.909 0.00 0.00 33.67 3.41
2368 2374 5.217978 TCCACTTTAACGTATGGTCACTT 57.782 39.130 0.00 0.00 33.67 3.16
2369 2375 4.992319 TCCACTTTAACGTATGGTCACTTG 59.008 41.667 0.00 0.00 33.67 3.16
2370 2376 4.753107 CCACTTTAACGTATGGTCACTTGT 59.247 41.667 0.00 0.00 0.00 3.16
2371 2377 5.107220 CCACTTTAACGTATGGTCACTTGTC 60.107 44.000 0.00 0.00 0.00 3.18
2372 2378 4.992951 ACTTTAACGTATGGTCACTTGTCC 59.007 41.667 0.00 0.00 0.00 4.02
2373 2379 4.877378 TTAACGTATGGTCACTTGTCCT 57.123 40.909 0.00 0.00 0.00 3.85
2374 2380 3.764237 AACGTATGGTCACTTGTCCTT 57.236 42.857 0.00 0.00 0.00 3.36
2375 2381 4.877378 AACGTATGGTCACTTGTCCTTA 57.123 40.909 0.00 0.00 0.00 2.69
2376 2382 5.416271 AACGTATGGTCACTTGTCCTTAT 57.584 39.130 0.00 0.00 0.00 1.73
2377 2383 6.534475 AACGTATGGTCACTTGTCCTTATA 57.466 37.500 0.00 0.00 0.00 0.98
2378 2384 6.534475 ACGTATGGTCACTTGTCCTTATAA 57.466 37.500 0.00 0.00 0.00 0.98
2379 2385 6.938507 ACGTATGGTCACTTGTCCTTATAAA 58.061 36.000 0.00 0.00 0.00 1.40
2380 2386 7.388437 ACGTATGGTCACTTGTCCTTATAAAA 58.612 34.615 0.00 0.00 0.00 1.52
2381 2387 8.044908 ACGTATGGTCACTTGTCCTTATAAAAT 58.955 33.333 0.00 0.00 0.00 1.82
2382 2388 8.548721 CGTATGGTCACTTGTCCTTATAAAATC 58.451 37.037 0.00 0.00 0.00 2.17
2383 2389 9.391006 GTATGGTCACTTGTCCTTATAAAATCA 57.609 33.333 0.00 0.00 0.00 2.57
2384 2390 7.921786 TGGTCACTTGTCCTTATAAAATCAG 57.078 36.000 0.00 0.00 0.00 2.90
2385 2391 7.458397 TGGTCACTTGTCCTTATAAAATCAGT 58.542 34.615 0.00 0.00 0.00 3.41
2386 2392 8.598916 TGGTCACTTGTCCTTATAAAATCAGTA 58.401 33.333 0.00 0.00 0.00 2.74
2387 2393 8.880750 GGTCACTTGTCCTTATAAAATCAGTAC 58.119 37.037 0.00 0.00 0.00 2.73
2388 2394 9.431887 GTCACTTGTCCTTATAAAATCAGTACA 57.568 33.333 0.00 0.00 0.00 2.90
2389 2395 9.653287 TCACTTGTCCTTATAAAATCAGTACAG 57.347 33.333 0.00 0.00 0.00 2.74
2390 2396 9.436957 CACTTGTCCTTATAAAATCAGTACAGT 57.563 33.333 0.00 0.00 0.00 3.55
2403 2409 3.170991 AGTACAGTTACTGAGCTCCCA 57.829 47.619 20.07 0.00 37.15 4.37
2404 2410 3.507411 AGTACAGTTACTGAGCTCCCAA 58.493 45.455 20.07 0.00 37.15 4.12
2405 2411 2.841442 ACAGTTACTGAGCTCCCAAC 57.159 50.000 20.07 12.08 35.18 3.77
2406 2412 2.047061 ACAGTTACTGAGCTCCCAACA 58.953 47.619 20.07 0.00 35.18 3.33
2407 2413 2.438021 ACAGTTACTGAGCTCCCAACAA 59.562 45.455 20.07 0.00 35.18 2.83
2408 2414 3.118038 ACAGTTACTGAGCTCCCAACAAA 60.118 43.478 20.07 0.00 35.18 2.83
2409 2415 4.074970 CAGTTACTGAGCTCCCAACAAAT 58.925 43.478 12.15 0.00 32.44 2.32
2410 2416 4.520492 CAGTTACTGAGCTCCCAACAAATT 59.480 41.667 12.15 0.00 32.44 1.82
2411 2417 4.520492 AGTTACTGAGCTCCCAACAAATTG 59.480 41.667 12.15 0.00 35.40 2.32
2412 2418 1.615392 ACTGAGCTCCCAACAAATTGC 59.385 47.619 12.15 0.00 34.17 3.56
2413 2419 0.597568 TGAGCTCCCAACAAATTGCG 59.402 50.000 12.15 0.00 34.17 4.85
2414 2420 0.733909 GAGCTCCCAACAAATTGCGC 60.734 55.000 0.87 0.00 34.17 6.09
2415 2421 1.181098 AGCTCCCAACAAATTGCGCT 61.181 50.000 9.73 0.00 34.17 5.92
2416 2422 0.525761 GCTCCCAACAAATTGCGCTA 59.474 50.000 9.73 0.00 34.17 4.26
2417 2423 1.134946 GCTCCCAACAAATTGCGCTAT 59.865 47.619 9.73 2.86 34.17 2.97
2418 2424 2.417243 GCTCCCAACAAATTGCGCTATT 60.417 45.455 11.38 11.38 34.17 1.73
2419 2425 3.848726 CTCCCAACAAATTGCGCTATTT 58.151 40.909 21.50 21.50 34.17 1.40
2420 2426 3.583806 TCCCAACAAATTGCGCTATTTG 58.416 40.909 37.94 37.94 46.20 2.32
2421 2427 2.672381 CCCAACAAATTGCGCTATTTGG 59.328 45.455 40.05 30.69 45.45 3.28
2422 2428 3.324993 CCAACAAATTGCGCTATTTGGT 58.675 40.909 40.05 36.69 44.14 3.67
2424 2430 2.336667 ACAAATTGCGCTATTTGGTGC 58.663 42.857 40.05 2.61 45.45 5.01
2428 2434 1.720894 TGCGCTATTTGGTGCATCG 59.279 52.632 9.73 0.00 45.91 3.84
2429 2435 0.742635 TGCGCTATTTGGTGCATCGA 60.743 50.000 9.73 0.00 45.91 3.59
2430 2436 0.588252 GCGCTATTTGGTGCATCGAT 59.412 50.000 0.00 0.00 41.71 3.59
2431 2437 1.661178 GCGCTATTTGGTGCATCGATG 60.661 52.381 21.27 21.27 41.71 3.84
2432 2438 1.069703 CGCTATTTGGTGCATCGATGG 60.070 52.381 26.00 8.82 0.00 3.51
2433 2439 2.221169 GCTATTTGGTGCATCGATGGA 58.779 47.619 26.00 21.56 0.00 3.41
2434 2440 2.816087 GCTATTTGGTGCATCGATGGAT 59.184 45.455 26.00 11.05 0.00 3.41
2435 2441 4.002982 GCTATTTGGTGCATCGATGGATA 58.997 43.478 26.00 14.14 0.00 2.59
2436 2442 4.637534 GCTATTTGGTGCATCGATGGATAT 59.362 41.667 26.00 16.59 0.00 1.63
2437 2443 5.817296 GCTATTTGGTGCATCGATGGATATA 59.183 40.000 26.00 16.79 0.00 0.86
2438 2444 6.018425 GCTATTTGGTGCATCGATGGATATAG 60.018 42.308 26.00 23.61 0.00 1.31
2439 2445 3.251479 TGGTGCATCGATGGATATAGC 57.749 47.619 26.00 11.30 0.00 2.97
2440 2446 2.566724 TGGTGCATCGATGGATATAGCA 59.433 45.455 26.00 13.38 29.60 3.49
2441 2447 3.193263 GGTGCATCGATGGATATAGCAG 58.807 50.000 26.00 0.00 31.94 4.24
2442 2448 3.193263 GTGCATCGATGGATATAGCAGG 58.807 50.000 26.00 0.00 31.94 4.85
2443 2449 2.208431 GCATCGATGGATATAGCAGGC 58.792 52.381 26.00 3.90 0.00 4.85
2444 2450 2.419159 GCATCGATGGATATAGCAGGCA 60.419 50.000 26.00 0.00 0.00 4.75
2445 2451 3.193263 CATCGATGGATATAGCAGGCAC 58.807 50.000 17.96 0.00 0.00 5.01
2446 2452 1.202348 TCGATGGATATAGCAGGCACG 59.798 52.381 0.00 0.00 0.00 5.34
2447 2453 1.067565 CGATGGATATAGCAGGCACGT 60.068 52.381 0.00 0.00 0.00 4.49
2448 2454 2.341257 GATGGATATAGCAGGCACGTG 58.659 52.381 12.28 12.28 0.00 4.49
2449 2455 0.392706 TGGATATAGCAGGCACGTGG 59.607 55.000 18.88 1.27 0.00 4.94
2450 2456 0.320771 GGATATAGCAGGCACGTGGG 60.321 60.000 18.88 0.00 0.00 4.61
2451 2457 0.679505 GATATAGCAGGCACGTGGGA 59.320 55.000 18.88 0.00 0.00 4.37
2452 2458 0.393077 ATATAGCAGGCACGTGGGAC 59.607 55.000 18.88 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.037382 TGTAGAAAGAAGCATCTCTGATTTTG 57.963 34.615 0.00 0.00 33.77 2.44
293 294 8.374743 TCTGGTGTTATAAGCTGATATGCATAA 58.625 33.333 11.13 0.00 34.99 1.90
420 421 6.215845 GTGTTATGTTGGCAATCAAACTTCT 58.784 36.000 1.92 0.00 37.08 2.85
556 557 3.569277 TGTTATAGCTCGCGTAATGGGTA 59.431 43.478 5.77 3.33 0.00 3.69
599 600 3.381908 CAGAGTAAGTCTATCGGGCAAGT 59.618 47.826 0.00 0.00 32.51 3.16
608 609 3.702045 GGAGTGTGCCAGAGTAAGTCTAT 59.298 47.826 0.00 0.00 32.51 1.98
701 703 1.678101 GCCATATCTGTTTCACCCTGC 59.322 52.381 0.00 0.00 0.00 4.85
816 818 0.308993 GAAGCCGCCTATGTCATTGC 59.691 55.000 0.00 0.00 0.00 3.56
854 856 3.438087 CCAGAGTACAATGTGAGCTTTGG 59.562 47.826 0.00 3.23 35.02 3.28
918 920 2.225091 TGCTTGTTGGATCCCTGATGTT 60.225 45.455 9.90 0.00 0.00 2.71
919 921 1.355381 TGCTTGTTGGATCCCTGATGT 59.645 47.619 9.90 0.00 0.00 3.06
996 998 3.846896 GCTTCTCGACGATATTCATACCG 59.153 47.826 0.00 0.00 0.00 4.02
1007 1009 4.261238 GGAGAATGATAAGCTTCTCGACGA 60.261 45.833 0.00 0.00 45.39 4.20
1011 1013 3.312828 CCGGAGAATGATAAGCTTCTCG 58.687 50.000 0.00 0.00 45.39 4.04
1019 1021 2.025793 TGCCAAACCCGGAGAATGATAA 60.026 45.455 0.73 0.00 0.00 1.75
1020 1022 1.562008 TGCCAAACCCGGAGAATGATA 59.438 47.619 0.73 0.00 0.00 2.15
1026 1028 2.429930 CACTGCCAAACCCGGAGA 59.570 61.111 0.73 0.00 0.00 3.71
1027 1029 3.365265 GCACTGCCAAACCCGGAG 61.365 66.667 0.73 0.00 0.00 4.63
1099 1101 0.318762 AGAAACTCGAGAAGCGGCTT 59.681 50.000 21.68 16.36 41.33 4.35
1120 1122 0.966875 TGGGTGACAATGCTGATGGC 60.967 55.000 0.00 0.00 42.22 4.40
1129 1131 5.478332 GGAAAAGATCTTCTTGGGTGACAAT 59.522 40.000 8.78 0.00 36.71 2.71
1146 1148 1.202486 ACGTCAACGAGCAGGAAAAGA 60.202 47.619 9.88 0.00 43.02 2.52
1154 1156 1.661509 CTGCTGACGTCAACGAGCA 60.662 57.895 23.59 23.59 43.66 4.26
1340 1345 1.773496 GCTTCGTTCGAAGTCGTGG 59.227 57.895 27.51 9.97 42.43 4.94
1342 1347 1.728426 CCGCTTCGTTCGAAGTCGT 60.728 57.895 28.92 0.00 42.43 4.34
1345 1350 0.031721 AGAACCGCTTCGTTCGAAGT 59.968 50.000 27.51 13.82 45.56 3.01
1600 1605 0.107606 TCTCGTCCTTCTCTAGCGCT 60.108 55.000 17.26 17.26 0.00 5.92
1605 1610 2.630158 CGTCCTTCTCGTCCTTCTCTA 58.370 52.381 0.00 0.00 0.00 2.43
1606 1611 1.455248 CGTCCTTCTCGTCCTTCTCT 58.545 55.000 0.00 0.00 0.00 3.10
1702 1707 2.186903 CCCGAGGACGACAATGGG 59.813 66.667 0.00 0.00 42.66 4.00
1822 1827 3.774959 CTATGCCGCCGCGTTCTCT 62.775 63.158 12.58 0.00 38.08 3.10
1837 1842 1.237458 GCACCTCCCCTCCTCCTAT 59.763 63.158 0.00 0.00 0.00 2.57
1997 2003 1.396996 ACGCCGGATCGAAATTCTTTG 59.603 47.619 5.05 0.00 0.00 2.77
2000 2006 2.589798 TTACGCCGGATCGAAATTCT 57.410 45.000 5.05 0.00 0.00 2.40
2024 2030 1.890552 AGACTGAGATCCAATGGCCT 58.109 50.000 3.32 0.00 0.00 5.19
2029 2035 5.965033 ACAACCATAGACTGAGATCCAAT 57.035 39.130 0.00 0.00 0.00 3.16
2032 2038 9.482627 CTAAAATACAACCATAGACTGAGATCC 57.517 37.037 0.00 0.00 0.00 3.36
2043 2049 4.121317 CGGACGGCTAAAATACAACCATA 58.879 43.478 0.00 0.00 0.00 2.74
2048 2054 4.395959 AGATCGGACGGCTAAAATACAA 57.604 40.909 0.00 0.00 0.00 2.41
2075 2081 2.368875 GAGATGGAAGGGGAATAGCGAA 59.631 50.000 0.00 0.00 0.00 4.70
2082 2088 3.740780 AGAGATTGAGATGGAAGGGGAA 58.259 45.455 0.00 0.00 0.00 3.97
2083 2089 3.428063 AGAGATTGAGATGGAAGGGGA 57.572 47.619 0.00 0.00 0.00 4.81
2084 2090 5.424895 CCTATAGAGATTGAGATGGAAGGGG 59.575 48.000 0.00 0.00 0.00 4.79
2085 2091 5.104982 GCCTATAGAGATTGAGATGGAAGGG 60.105 48.000 0.00 0.00 0.00 3.95
2086 2092 5.104982 GGCCTATAGAGATTGAGATGGAAGG 60.105 48.000 0.00 0.00 0.00 3.46
2087 2093 5.721000 AGGCCTATAGAGATTGAGATGGAAG 59.279 44.000 1.29 0.00 0.00 3.46
2088 2094 5.659503 AGGCCTATAGAGATTGAGATGGAA 58.340 41.667 1.29 0.00 0.00 3.53
2089 2095 5.282436 AGGCCTATAGAGATTGAGATGGA 57.718 43.478 1.29 0.00 0.00 3.41
2090 2096 7.499292 CATTAGGCCTATAGAGATTGAGATGG 58.501 42.308 14.74 0.00 0.00 3.51
2091 2097 6.985645 GCATTAGGCCTATAGAGATTGAGATG 59.014 42.308 14.74 10.50 36.11 2.90
2092 2098 6.183360 CGCATTAGGCCTATAGAGATTGAGAT 60.183 42.308 14.74 0.00 40.31 2.75
2093 2099 5.126222 CGCATTAGGCCTATAGAGATTGAGA 59.874 44.000 14.74 0.00 40.31 3.27
2094 2100 5.105554 ACGCATTAGGCCTATAGAGATTGAG 60.106 44.000 14.74 4.29 40.31 3.02
2095 2101 4.772624 ACGCATTAGGCCTATAGAGATTGA 59.227 41.667 14.74 0.00 40.31 2.57
2096 2102 5.078411 ACGCATTAGGCCTATAGAGATTG 57.922 43.478 14.74 0.76 40.31 2.67
2097 2103 5.746990 AACGCATTAGGCCTATAGAGATT 57.253 39.130 14.74 1.65 40.31 2.40
2098 2104 5.746990 AAACGCATTAGGCCTATAGAGAT 57.253 39.130 14.74 0.00 40.31 2.75
2099 2105 5.546621 AAAACGCATTAGGCCTATAGAGA 57.453 39.130 14.74 0.00 40.31 3.10
2100 2106 5.758296 TGAAAAACGCATTAGGCCTATAGAG 59.242 40.000 14.74 13.17 40.31 2.43
2101 2107 5.676552 TGAAAAACGCATTAGGCCTATAGA 58.323 37.500 14.74 0.00 40.31 1.98
2102 2108 6.371809 TTGAAAAACGCATTAGGCCTATAG 57.628 37.500 14.74 10.42 40.31 1.31
2103 2109 5.298276 CCTTGAAAAACGCATTAGGCCTATA 59.702 40.000 14.74 5.18 40.31 1.31
2104 2110 4.097892 CCTTGAAAAACGCATTAGGCCTAT 59.902 41.667 14.74 0.75 40.31 2.57
2105 2111 3.442273 CCTTGAAAAACGCATTAGGCCTA 59.558 43.478 8.91 8.91 40.31 3.93
2106 2112 2.231235 CCTTGAAAAACGCATTAGGCCT 59.769 45.455 11.78 11.78 40.31 5.19
2107 2113 2.029380 ACCTTGAAAAACGCATTAGGCC 60.029 45.455 0.00 0.00 40.31 5.19
2108 2114 3.297830 ACCTTGAAAAACGCATTAGGC 57.702 42.857 0.00 0.00 39.90 3.93
2109 2115 7.883229 AATTAACCTTGAAAAACGCATTAGG 57.117 32.000 0.00 0.00 0.00 2.69
2110 2116 9.579610 CAAAATTAACCTTGAAAAACGCATTAG 57.420 29.630 0.00 0.00 0.00 1.73
2111 2117 9.314321 TCAAAATTAACCTTGAAAAACGCATTA 57.686 25.926 0.00 0.00 0.00 1.90
2112 2118 8.119845 GTCAAAATTAACCTTGAAAAACGCATT 58.880 29.630 3.29 0.00 33.52 3.56
2113 2119 7.254624 GGTCAAAATTAACCTTGAAAAACGCAT 60.255 33.333 3.29 0.00 33.52 4.73
2114 2120 6.036191 GGTCAAAATTAACCTTGAAAAACGCA 59.964 34.615 3.29 0.00 33.52 5.24
2115 2121 6.036191 TGGTCAAAATTAACCTTGAAAAACGC 59.964 34.615 3.29 0.00 36.47 4.84
2116 2122 7.527084 TGGTCAAAATTAACCTTGAAAAACG 57.473 32.000 3.29 0.00 36.47 3.60
2119 2125 9.454859 ACATTTGGTCAAAATTAACCTTGAAAA 57.545 25.926 0.00 3.04 36.28 2.29
2120 2126 9.454859 AACATTTGGTCAAAATTAACCTTGAAA 57.545 25.926 0.00 0.86 36.28 2.69
2122 2128 9.757227 CTAACATTTGGTCAAAATTAACCTTGA 57.243 29.630 0.00 0.00 36.28 3.02
2123 2129 9.757227 TCTAACATTTGGTCAAAATTAACCTTG 57.243 29.630 0.00 0.00 36.28 3.61
2124 2130 9.981114 CTCTAACATTTGGTCAAAATTAACCTT 57.019 29.630 0.00 0.00 36.28 3.50
2125 2131 8.088365 GCTCTAACATTTGGTCAAAATTAACCT 58.912 33.333 0.00 0.00 36.28 3.50
2126 2132 7.870445 TGCTCTAACATTTGGTCAAAATTAACC 59.130 33.333 0.00 0.00 36.28 2.85
2127 2133 8.810652 TGCTCTAACATTTGGTCAAAATTAAC 57.189 30.769 0.00 0.00 36.28 2.01
2128 2134 9.995003 ATTGCTCTAACATTTGGTCAAAATTAA 57.005 25.926 0.00 0.00 36.28 1.40
2130 2136 9.995003 TTATTGCTCTAACATTTGGTCAAAATT 57.005 25.926 0.00 1.87 36.28 1.82
2143 2149 9.723601 TGCATGTCATATATTATTGCTCTAACA 57.276 29.630 0.00 0.00 0.00 2.41
2146 2152 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
2147 2153 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
2157 2163 9.336171 TGCTTTATGTAAGTTGCATGTCATATA 57.664 29.630 15.82 0.00 36.19 0.86
2158 2164 8.224389 TGCTTTATGTAAGTTGCATGTCATAT 57.776 30.769 15.82 0.00 36.19 1.78
2159 2165 7.622893 TGCTTTATGTAAGTTGCATGTCATA 57.377 32.000 15.82 0.00 36.19 2.15
2160 2166 6.513806 TGCTTTATGTAAGTTGCATGTCAT 57.486 33.333 15.82 0.00 36.19 3.06
2161 2167 5.956068 TGCTTTATGTAAGTTGCATGTCA 57.044 34.783 15.82 6.08 36.19 3.58
2162 2168 6.912591 GGTATGCTTTATGTAAGTTGCATGTC 59.087 38.462 15.82 3.87 40.65 3.06
2163 2169 6.458206 CGGTATGCTTTATGTAAGTTGCATGT 60.458 38.462 15.82 0.00 40.65 3.21
2164 2170 5.909054 CGGTATGCTTTATGTAAGTTGCATG 59.091 40.000 15.82 1.56 40.65 4.06
2165 2171 5.588648 ACGGTATGCTTTATGTAAGTTGCAT 59.411 36.000 11.37 11.37 42.64 3.96
2166 2172 4.938832 ACGGTATGCTTTATGTAAGTTGCA 59.061 37.500 0.00 0.00 36.19 4.08
2167 2173 5.064198 TGACGGTATGCTTTATGTAAGTTGC 59.936 40.000 0.00 0.00 36.19 4.17
2168 2174 6.656314 TGACGGTATGCTTTATGTAAGTTG 57.344 37.500 0.00 0.00 36.19 3.16
2169 2175 7.389607 AGTTTGACGGTATGCTTTATGTAAGTT 59.610 33.333 0.00 0.00 36.19 2.66
2170 2176 6.877322 AGTTTGACGGTATGCTTTATGTAAGT 59.123 34.615 0.00 0.00 36.19 2.24
2171 2177 7.303634 AGTTTGACGGTATGCTTTATGTAAG 57.696 36.000 0.00 0.00 36.90 2.34
2172 2178 6.035220 CGAGTTTGACGGTATGCTTTATGTAA 59.965 38.462 0.00 0.00 0.00 2.41
2173 2179 5.517411 CGAGTTTGACGGTATGCTTTATGTA 59.483 40.000 0.00 0.00 0.00 2.29
2174 2180 4.328983 CGAGTTTGACGGTATGCTTTATGT 59.671 41.667 0.00 0.00 0.00 2.29
2175 2181 4.328983 ACGAGTTTGACGGTATGCTTTATG 59.671 41.667 0.00 0.00 34.93 1.90
2176 2182 4.501071 ACGAGTTTGACGGTATGCTTTAT 58.499 39.130 0.00 0.00 34.93 1.40
2177 2183 3.916761 ACGAGTTTGACGGTATGCTTTA 58.083 40.909 0.00 0.00 34.93 1.85
2178 2184 2.762745 ACGAGTTTGACGGTATGCTTT 58.237 42.857 0.00 0.00 34.93 3.51
2179 2185 2.450609 ACGAGTTTGACGGTATGCTT 57.549 45.000 0.00 0.00 34.93 3.91
2180 2186 3.444916 CATACGAGTTTGACGGTATGCT 58.555 45.455 0.00 0.00 35.39 3.79
2181 2187 3.836229 CATACGAGTTTGACGGTATGC 57.164 47.619 0.00 0.00 35.39 3.14
2182 2188 2.215587 CGCATACGAGTTTGACGGTATG 59.784 50.000 15.01 15.01 43.93 2.39
2183 2189 2.097954 TCGCATACGAGTTTGACGGTAT 59.902 45.455 0.00 0.00 45.12 2.73
2184 2190 1.468127 TCGCATACGAGTTTGACGGTA 59.532 47.619 0.00 0.00 45.12 4.02
2185 2191 0.241749 TCGCATACGAGTTTGACGGT 59.758 50.000 0.00 0.00 45.12 4.83
2186 2192 3.024423 TCGCATACGAGTTTGACGG 57.976 52.632 0.00 0.00 45.12 4.79
2223 2229 9.872721 ACATGACAATGCATAATGTGAAAATTA 57.127 25.926 8.74 0.00 37.29 1.40
2224 2230 8.780846 ACATGACAATGCATAATGTGAAAATT 57.219 26.923 8.74 0.00 37.29 1.82
2225 2231 9.304731 GTACATGACAATGCATAATGTGAAAAT 57.695 29.630 19.53 4.60 37.29 1.82
2226 2232 8.522003 AGTACATGACAATGCATAATGTGAAAA 58.478 29.630 19.53 4.98 37.29 2.29
2227 2233 8.054152 AGTACATGACAATGCATAATGTGAAA 57.946 30.769 19.53 4.80 37.29 2.69
2228 2234 7.628769 AGTACATGACAATGCATAATGTGAA 57.371 32.000 19.53 6.69 37.29 3.18
2229 2235 8.907222 ATAGTACATGACAATGCATAATGTGA 57.093 30.769 19.53 9.47 37.29 3.58
2258 2264 9.258826 CAAGACCATATTTGACAATTGACAAAA 57.741 29.630 30.06 21.72 41.36 2.44
2259 2265 8.637099 TCAAGACCATATTTGACAATTGACAAA 58.363 29.630 29.07 29.07 41.98 2.83
2260 2266 8.175925 TCAAGACCATATTTGACAATTGACAA 57.824 30.769 17.47 17.47 0.00 3.18
2261 2267 7.757941 TCAAGACCATATTTGACAATTGACA 57.242 32.000 13.59 9.79 0.00 3.58
2262 2268 9.474920 TTTTCAAGACCATATTTGACAATTGAC 57.525 29.630 13.59 6.72 33.36 3.18
2265 2271 8.977505 CGTTTTTCAAGACCATATTTGACAATT 58.022 29.630 0.00 0.00 33.36 2.32
2266 2272 7.116233 GCGTTTTTCAAGACCATATTTGACAAT 59.884 33.333 0.00 0.00 33.36 2.71
2267 2273 6.419413 GCGTTTTTCAAGACCATATTTGACAA 59.581 34.615 0.00 0.00 33.36 3.18
2268 2274 5.918011 GCGTTTTTCAAGACCATATTTGACA 59.082 36.000 0.00 0.00 33.36 3.58
2269 2275 6.149633 AGCGTTTTTCAAGACCATATTTGAC 58.850 36.000 0.00 0.00 33.36 3.18
2270 2276 6.325919 AGCGTTTTTCAAGACCATATTTGA 57.674 33.333 0.00 0.00 0.00 2.69
2271 2277 7.406799 AAAGCGTTTTTCAAGACCATATTTG 57.593 32.000 0.00 0.00 0.00 2.32
2272 2278 7.812669 CCTAAAGCGTTTTTCAAGACCATATTT 59.187 33.333 1.60 0.00 0.00 1.40
2273 2279 7.312899 CCTAAAGCGTTTTTCAAGACCATATT 58.687 34.615 1.60 0.00 0.00 1.28
2274 2280 6.625081 GCCTAAAGCGTTTTTCAAGACCATAT 60.625 38.462 1.60 0.00 0.00 1.78
2275 2281 5.335348 GCCTAAAGCGTTTTTCAAGACCATA 60.335 40.000 1.60 0.00 0.00 2.74
2276 2282 4.558697 GCCTAAAGCGTTTTTCAAGACCAT 60.559 41.667 1.60 0.00 0.00 3.55
2277 2283 3.243267 GCCTAAAGCGTTTTTCAAGACCA 60.243 43.478 1.60 0.00 0.00 4.02
2278 2284 3.305964 GCCTAAAGCGTTTTTCAAGACC 58.694 45.455 1.60 0.00 0.00 3.85
2279 2285 3.305964 GGCCTAAAGCGTTTTTCAAGAC 58.694 45.455 1.60 0.00 45.17 3.01
2280 2286 2.295070 GGGCCTAAAGCGTTTTTCAAGA 59.705 45.455 0.84 0.00 45.17 3.02
2281 2287 2.296190 AGGGCCTAAAGCGTTTTTCAAG 59.704 45.455 2.82 0.00 45.17 3.02
2282 2288 2.312390 AGGGCCTAAAGCGTTTTTCAA 58.688 42.857 2.82 0.00 45.17 2.69
2283 2289 1.989706 AGGGCCTAAAGCGTTTTTCA 58.010 45.000 2.82 0.00 45.17 2.69
2284 2290 7.683437 ATATATAGGGCCTAAAGCGTTTTTC 57.317 36.000 18.91 0.00 45.17 2.29
2285 2291 8.599792 TCTATATATAGGGCCTAAAGCGTTTTT 58.400 33.333 18.91 0.00 45.17 1.94
2286 2292 8.142485 TCTATATATAGGGCCTAAAGCGTTTT 57.858 34.615 18.91 2.00 45.17 2.43
2287 2293 7.729124 TCTATATATAGGGCCTAAAGCGTTT 57.271 36.000 18.91 1.12 45.17 3.60
2288 2294 7.202011 CCATCTATATATAGGGCCTAAAGCGTT 60.202 40.741 18.91 1.94 45.17 4.84
2289 2295 6.267928 CCATCTATATATAGGGCCTAAAGCGT 59.732 42.308 18.91 2.76 45.17 5.07
2290 2296 6.493802 TCCATCTATATATAGGGCCTAAAGCG 59.506 42.308 18.91 4.61 45.17 4.68
2291 2297 7.857404 TCCATCTATATATAGGGCCTAAAGC 57.143 40.000 18.91 0.00 42.60 3.51
2292 2298 8.875168 CCTTCCATCTATATATAGGGCCTAAAG 58.125 40.741 18.91 11.27 0.00 1.85
2293 2299 8.583686 TCCTTCCATCTATATATAGGGCCTAAA 58.416 37.037 18.91 6.72 0.00 1.85
2294 2300 8.138306 TCCTTCCATCTATATATAGGGCCTAA 57.862 38.462 18.91 7.61 0.00 2.69
2295 2301 7.202421 CCTCCTTCCATCTATATATAGGGCCTA 60.202 44.444 17.16 17.16 0.00 3.93
2296 2302 6.413802 CCTCCTTCCATCTATATATAGGGCCT 60.414 46.154 12.58 12.58 0.00 5.19
2297 2303 5.782845 CCTCCTTCCATCTATATATAGGGCC 59.217 48.000 17.81 0.00 0.00 5.80
2298 2304 5.782845 CCCTCCTTCCATCTATATATAGGGC 59.217 48.000 17.81 0.00 34.00 5.19
2299 2305 7.146851 ACTCCCTCCTTCCATCTATATATAGGG 60.147 44.444 17.81 12.67 41.13 3.53
2300 2306 7.831955 ACTCCCTCCTTCCATCTATATATAGG 58.168 42.308 17.81 4.75 0.00 2.57
2302 2308 9.760327 TCTACTCCCTCCTTCCATCTATATATA 57.240 37.037 0.00 0.00 0.00 0.86
2303 2309 8.660681 TCTACTCCCTCCTTCCATCTATATAT 57.339 38.462 0.00 0.00 0.00 0.86
2304 2310 8.478214 TTCTACTCCCTCCTTCCATCTATATA 57.522 38.462 0.00 0.00 0.00 0.86
2305 2311 6.996876 TCTACTCCCTCCTTCCATCTATAT 57.003 41.667 0.00 0.00 0.00 0.86
2306 2312 6.566870 TCTTCTACTCCCTCCTTCCATCTATA 59.433 42.308 0.00 0.00 0.00 1.31
2307 2313 5.377164 TCTTCTACTCCCTCCTTCCATCTAT 59.623 44.000 0.00 0.00 0.00 1.98
2308 2314 4.732443 TCTTCTACTCCCTCCTTCCATCTA 59.268 45.833 0.00 0.00 0.00 1.98
2309 2315 3.533907 TCTTCTACTCCCTCCTTCCATCT 59.466 47.826 0.00 0.00 0.00 2.90
2310 2316 3.917300 TCTTCTACTCCCTCCTTCCATC 58.083 50.000 0.00 0.00 0.00 3.51
2311 2317 4.567987 ATCTTCTACTCCCTCCTTCCAT 57.432 45.455 0.00 0.00 0.00 3.41
2312 2318 4.354208 AATCTTCTACTCCCTCCTTCCA 57.646 45.455 0.00 0.00 0.00 3.53
2313 2319 4.717280 TCAAATCTTCTACTCCCTCCTTCC 59.283 45.833 0.00 0.00 0.00 3.46
2314 2320 5.659079 TCTCAAATCTTCTACTCCCTCCTTC 59.341 44.000 0.00 0.00 0.00 3.46
2315 2321 5.594777 TCTCAAATCTTCTACTCCCTCCTT 58.405 41.667 0.00 0.00 0.00 3.36
2316 2322 5.208121 CTCTCAAATCTTCTACTCCCTCCT 58.792 45.833 0.00 0.00 0.00 3.69
2317 2323 4.202212 GCTCTCAAATCTTCTACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
2318 2324 4.499019 CGCTCTCAAATCTTCTACTCCCTC 60.499 50.000 0.00 0.00 0.00 4.30
2319 2325 3.383185 CGCTCTCAAATCTTCTACTCCCT 59.617 47.826 0.00 0.00 0.00 4.20
2320 2326 3.381908 TCGCTCTCAAATCTTCTACTCCC 59.618 47.826 0.00 0.00 0.00 4.30
2321 2327 4.640789 TCGCTCTCAAATCTTCTACTCC 57.359 45.455 0.00 0.00 0.00 3.85
2322 2328 7.540745 GGAATATCGCTCTCAAATCTTCTACTC 59.459 40.741 0.00 0.00 0.00 2.59
2323 2329 7.014711 TGGAATATCGCTCTCAAATCTTCTACT 59.985 37.037 0.00 0.00 0.00 2.57
2324 2330 7.115663 GTGGAATATCGCTCTCAAATCTTCTAC 59.884 40.741 0.00 0.00 0.00 2.59
2325 2331 7.014711 AGTGGAATATCGCTCTCAAATCTTCTA 59.985 37.037 0.00 0.00 0.00 2.10
2326 2332 5.988561 GTGGAATATCGCTCTCAAATCTTCT 59.011 40.000 0.00 0.00 0.00 2.85
2327 2333 5.988561 AGTGGAATATCGCTCTCAAATCTTC 59.011 40.000 0.00 0.00 0.00 2.87
2328 2334 5.923204 AGTGGAATATCGCTCTCAAATCTT 58.077 37.500 0.00 0.00 0.00 2.40
2329 2335 5.543507 AGTGGAATATCGCTCTCAAATCT 57.456 39.130 0.00 0.00 0.00 2.40
2330 2336 6.610741 AAAGTGGAATATCGCTCTCAAATC 57.389 37.500 0.00 0.00 0.00 2.17
2331 2337 7.254455 CGTTAAAGTGGAATATCGCTCTCAAAT 60.254 37.037 0.00 0.00 0.00 2.32
2332 2338 6.035650 CGTTAAAGTGGAATATCGCTCTCAAA 59.964 38.462 0.00 0.00 0.00 2.69
2333 2339 5.518847 CGTTAAAGTGGAATATCGCTCTCAA 59.481 40.000 0.00 0.00 0.00 3.02
2334 2340 5.041287 CGTTAAAGTGGAATATCGCTCTCA 58.959 41.667 0.00 0.00 0.00 3.27
2335 2341 5.041940 ACGTTAAAGTGGAATATCGCTCTC 58.958 41.667 0.00 0.00 0.00 3.20
2336 2342 5.007385 ACGTTAAAGTGGAATATCGCTCT 57.993 39.130 0.00 0.00 0.00 4.09
2337 2343 6.128902 CCATACGTTAAAGTGGAATATCGCTC 60.129 42.308 4.15 0.00 33.53 5.03
2338 2344 5.694910 CCATACGTTAAAGTGGAATATCGCT 59.305 40.000 4.15 0.00 33.53 4.93
2339 2345 5.464389 ACCATACGTTAAAGTGGAATATCGC 59.536 40.000 4.15 0.00 35.69 4.58
2340 2346 6.698329 TGACCATACGTTAAAGTGGAATATCG 59.302 38.462 4.15 0.00 35.69 2.92
2341 2347 7.709613 AGTGACCATACGTTAAAGTGGAATATC 59.290 37.037 4.15 0.00 35.69 1.63
2342 2348 7.562135 AGTGACCATACGTTAAAGTGGAATAT 58.438 34.615 4.15 0.00 35.69 1.28
2343 2349 6.938507 AGTGACCATACGTTAAAGTGGAATA 58.061 36.000 4.15 0.00 35.69 1.75
2344 2350 5.801380 AGTGACCATACGTTAAAGTGGAAT 58.199 37.500 4.15 0.00 35.69 3.01
2345 2351 5.217978 AGTGACCATACGTTAAAGTGGAA 57.782 39.130 4.15 0.00 35.69 3.53
2346 2352 4.877378 AGTGACCATACGTTAAAGTGGA 57.123 40.909 4.15 0.00 35.69 4.02
2347 2353 4.753107 ACAAGTGACCATACGTTAAAGTGG 59.247 41.667 4.15 0.65 37.74 4.00
2348 2354 5.107220 GGACAAGTGACCATACGTTAAAGTG 60.107 44.000 4.15 0.00 0.00 3.16
2349 2355 4.992951 GGACAAGTGACCATACGTTAAAGT 59.007 41.667 0.00 0.00 0.00 2.66
2350 2356 5.235516 AGGACAAGTGACCATACGTTAAAG 58.764 41.667 0.00 0.00 32.26 1.85
2351 2357 5.217978 AGGACAAGTGACCATACGTTAAA 57.782 39.130 0.00 0.00 32.26 1.52
2352 2358 4.877378 AGGACAAGTGACCATACGTTAA 57.123 40.909 0.00 0.00 32.26 2.01
2353 2359 4.877378 AAGGACAAGTGACCATACGTTA 57.123 40.909 0.00 0.00 32.26 3.18
2354 2360 3.764237 AAGGACAAGTGACCATACGTT 57.236 42.857 0.00 0.00 32.26 3.99
2355 2361 6.534475 TTATAAGGACAAGTGACCATACGT 57.466 37.500 0.00 0.00 32.26 3.57
2356 2362 7.837202 TTTTATAAGGACAAGTGACCATACG 57.163 36.000 2.72 0.00 32.26 3.06
2357 2363 9.391006 TGATTTTATAAGGACAAGTGACCATAC 57.609 33.333 2.72 0.00 32.26 2.39
2358 2364 9.613428 CTGATTTTATAAGGACAAGTGACCATA 57.387 33.333 2.72 0.00 32.26 2.74
2359 2365 8.109634 ACTGATTTTATAAGGACAAGTGACCAT 58.890 33.333 2.72 0.00 32.26 3.55
2360 2366 7.458397 ACTGATTTTATAAGGACAAGTGACCA 58.542 34.615 2.72 0.00 32.26 4.02
2361 2367 7.923414 ACTGATTTTATAAGGACAAGTGACC 57.077 36.000 0.00 0.00 0.00 4.02
2362 2368 9.431887 TGTACTGATTTTATAAGGACAAGTGAC 57.568 33.333 0.00 0.00 31.33 3.67
2363 2369 9.653287 CTGTACTGATTTTATAAGGACAAGTGA 57.347 33.333 0.00 0.00 34.08 3.41
2364 2370 9.436957 ACTGTACTGATTTTATAAGGACAAGTG 57.563 33.333 6.77 0.00 34.08 3.16
2383 2389 3.170991 TGGGAGCTCAGTAACTGTACT 57.829 47.619 17.19 0.00 41.49 2.73
2384 2390 3.006537 TGTTGGGAGCTCAGTAACTGTAC 59.993 47.826 17.19 0.91 32.61 2.90
2385 2391 3.236047 TGTTGGGAGCTCAGTAACTGTA 58.764 45.455 17.19 0.00 32.61 2.74
2386 2392 2.047061 TGTTGGGAGCTCAGTAACTGT 58.953 47.619 17.19 0.00 32.61 3.55
2387 2393 2.839486 TGTTGGGAGCTCAGTAACTG 57.161 50.000 17.19 0.00 0.00 3.16
2388 2394 3.857157 TTTGTTGGGAGCTCAGTAACT 57.143 42.857 17.19 0.00 0.00 2.24
2389 2395 4.798574 CAATTTGTTGGGAGCTCAGTAAC 58.201 43.478 17.19 16.32 0.00 2.50
2390 2396 3.255642 GCAATTTGTTGGGAGCTCAGTAA 59.744 43.478 17.19 4.23 0.00 2.24
2391 2397 2.819608 GCAATTTGTTGGGAGCTCAGTA 59.180 45.455 17.19 0.00 0.00 2.74
2392 2398 1.615392 GCAATTTGTTGGGAGCTCAGT 59.385 47.619 17.19 0.00 0.00 3.41
2393 2399 1.401931 CGCAATTTGTTGGGAGCTCAG 60.402 52.381 17.19 0.00 37.08 3.35
2394 2400 0.597568 CGCAATTTGTTGGGAGCTCA 59.402 50.000 17.19 0.00 37.08 4.26
2395 2401 0.733909 GCGCAATTTGTTGGGAGCTC 60.734 55.000 4.71 4.71 37.08 4.09
2396 2402 1.181098 AGCGCAATTTGTTGGGAGCT 61.181 50.000 11.47 0.00 37.08 4.09
2397 2403 0.525761 TAGCGCAATTTGTTGGGAGC 59.474 50.000 11.47 0.00 37.08 4.70
2398 2404 3.508744 AATAGCGCAATTTGTTGGGAG 57.491 42.857 11.47 0.00 37.08 4.30
2399 2405 3.583806 CAAATAGCGCAATTTGTTGGGA 58.416 40.909 11.47 0.00 40.44 4.37
2400 2406 2.672381 CCAAATAGCGCAATTTGTTGGG 59.328 45.455 11.47 0.00 42.68 4.12
2401 2407 3.123284 CACCAAATAGCGCAATTTGTTGG 59.877 43.478 11.47 15.84 42.68 3.77
2402 2408 3.423384 GCACCAAATAGCGCAATTTGTTG 60.423 43.478 11.47 14.16 42.68 3.33
2403 2409 2.736192 GCACCAAATAGCGCAATTTGTT 59.264 40.909 11.47 0.00 42.68 2.83
2404 2410 2.288702 TGCACCAAATAGCGCAATTTGT 60.289 40.909 11.47 0.09 42.68 2.83
2405 2411 2.335752 TGCACCAAATAGCGCAATTTG 58.664 42.857 11.47 12.52 43.45 2.32
2406 2412 2.739885 TGCACCAAATAGCGCAATTT 57.260 40.000 11.47 0.00 0.00 1.82
2407 2413 2.795681 CGATGCACCAAATAGCGCAATT 60.796 45.455 11.47 0.00 38.01 2.32
2408 2414 1.268692 CGATGCACCAAATAGCGCAAT 60.269 47.619 11.47 0.00 38.01 3.56
2409 2415 0.098552 CGATGCACCAAATAGCGCAA 59.901 50.000 11.47 0.00 38.01 4.85
2410 2416 0.742635 TCGATGCACCAAATAGCGCA 60.743 50.000 11.47 0.00 39.01 6.09
2411 2417 0.588252 ATCGATGCACCAAATAGCGC 59.412 50.000 0.00 0.00 0.00 5.92
2412 2418 1.069703 CCATCGATGCACCAAATAGCG 60.070 52.381 20.25 0.00 0.00 4.26
2413 2419 2.221169 TCCATCGATGCACCAAATAGC 58.779 47.619 20.25 0.00 0.00 2.97
2414 2420 6.018425 GCTATATCCATCGATGCACCAAATAG 60.018 42.308 20.25 17.53 0.00 1.73
2415 2421 5.817296 GCTATATCCATCGATGCACCAAATA 59.183 40.000 20.25 9.76 0.00 1.40
2416 2422 4.637534 GCTATATCCATCGATGCACCAAAT 59.362 41.667 20.25 8.99 0.00 2.32
2417 2423 4.002982 GCTATATCCATCGATGCACCAAA 58.997 43.478 20.25 2.07 0.00 3.28
2418 2424 3.007831 TGCTATATCCATCGATGCACCAA 59.992 43.478 20.25 4.07 0.00 3.67
2419 2425 2.566724 TGCTATATCCATCGATGCACCA 59.433 45.455 20.25 4.89 0.00 4.17
2420 2426 3.193263 CTGCTATATCCATCGATGCACC 58.807 50.000 20.25 4.07 0.00 5.01
2421 2427 3.193263 CCTGCTATATCCATCGATGCAC 58.807 50.000 20.25 4.08 0.00 4.57
2422 2428 2.419159 GCCTGCTATATCCATCGATGCA 60.419 50.000 20.25 5.48 0.00 3.96
2423 2429 2.208431 GCCTGCTATATCCATCGATGC 58.792 52.381 20.25 7.28 0.00 3.91
2424 2430 3.193263 GTGCCTGCTATATCCATCGATG 58.807 50.000 18.76 18.76 0.00 3.84
2425 2431 2.159184 CGTGCCTGCTATATCCATCGAT 60.159 50.000 0.00 0.00 0.00 3.59
2426 2432 1.202348 CGTGCCTGCTATATCCATCGA 59.798 52.381 0.00 0.00 0.00 3.59
2427 2433 1.067565 ACGTGCCTGCTATATCCATCG 60.068 52.381 0.00 0.00 0.00 3.84
2428 2434 2.341257 CACGTGCCTGCTATATCCATC 58.659 52.381 0.82 0.00 0.00 3.51
2429 2435 1.002430 CCACGTGCCTGCTATATCCAT 59.998 52.381 10.91 0.00 0.00 3.41
2430 2436 0.392706 CCACGTGCCTGCTATATCCA 59.607 55.000 10.91 0.00 0.00 3.41
2431 2437 0.320771 CCCACGTGCCTGCTATATCC 60.321 60.000 10.91 0.00 0.00 2.59
2432 2438 0.679505 TCCCACGTGCCTGCTATATC 59.320 55.000 10.91 0.00 0.00 1.63
2433 2439 0.393077 GTCCCACGTGCCTGCTATAT 59.607 55.000 10.91 0.00 0.00 0.86
2434 2440 1.820581 GTCCCACGTGCCTGCTATA 59.179 57.895 10.91 0.00 0.00 1.31
2435 2441 2.584608 GTCCCACGTGCCTGCTAT 59.415 61.111 10.91 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.