AutoCloner

Multiple sequence alignment - TraesCS7B01G386600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G386600	chr7B	100.000	3260	0	0	1	3260	651454820	651451561	0.000000e+00	6021.0
1	TraesCS7B01G386600	chr7B	90.985	2163	146	17	558	2688	651336219	651338364	0.000000e+00	2868.0
2	TraesCS7B01G386600	chr7B	79.840	1503	247	27	776	2253	472329641	472328170	0.000000e+00	1046.0
3	TraesCS7B01G386600	chr7B	79.574	1503	248	27	776	2253	472396509	472395041	0.000000e+00	1020.0
4	TraesCS7B01G386600	chr7B	95.110	593	21	6	2675	3260	472325904	472326495	0.000000e+00	928.0
5	TraesCS7B01G386600	chr7B	94.781	594	22	7	2675	3260	472392776	472393368	0.000000e+00	917.0
6	TraesCS7B01G386600	chr7B	79.811	1273	239	12	987	2253	651341196	651339936	0.000000e+00	911.0
7	TraesCS7B01G386600	chr7B	79.280	1250	234	19	1025	2254	651403716	651402472	0.000000e+00	850.0
8	TraesCS7B01G386600	chr7B	94.545	275	9	3	138	408	651321974	651322246	1.400000e-113	420.0
9	TraesCS7B01G386600	chr7B	88.158	304	27	4	303	605	472330144	472329849	1.440000e-93	353.0
10	TraesCS7B01G386600	chr7B	88.158	304	27	4	303	605	472397013	472396718	1.440000e-93	353.0
11	TraesCS7B01G386600	chr7B	87.829	304	28	5	303	605	651341858	651341563	6.690000e-92	348.0
12	TraesCS7B01G386600	chr7B	94.118	221	8	2	138	355	651302238	651302456	6.740000e-87	331.0
13	TraesCS7B01G386600	chr7B	91.525	118	9	1	1	118	651276972	651277088	9.360000e-36	161.0
14	TraesCS7B01G386600	chr7B	90.678	118	10	1	1	118	651304047	651304163	4.360000e-34	156.0
15	TraesCS7B01G386600	chr7B	96.629	89	3	0	441	529	651322240	651322328	7.290000e-32	148.0
16	TraesCS7B01G386600	chr7D	92.601	1757	71	20	1516	3260	583982284	583983993	0.000000e+00	2470.0
17	TraesCS7B01G386600	chr7D	87.420	1709	173	18	776	2471	583478661	583476982	0.000000e+00	1927.0
18	TraesCS7B01G386600	chr7D	89.117	634	67	2	898	1530	583973495	583974127	0.000000e+00	787.0
19	TraesCS7B01G386600	chr7D	85.623	626	66	11	734	1355	583989188	583988583	1.280000e-178	636.0
20	TraesCS7B01G386600	chr7D	89.227	362	34	3	147	507	583972636	583972993	6.420000e-122	448.0
21	TraesCS7B01G386600	chr7D	85.455	330	33	11	8	331	583989978	583989658	2.420000e-86	329.0
22	TraesCS7B01G386600	chr7D	87.500	288	30	4	2573	2858	583474411	583474128	8.720000e-86	327.0
23	TraesCS7B01G386600	chr7D	86.093	302	31	5	308	605	583479163	583478869	6.790000e-82	315.0
24	TraesCS7B01G386600	chr7D	91.304	46	4	0	657	702	583973191	583973236	2.720000e-06	63.9
25	TraesCS7B01G386600	chr6A	88.391	2007	160	26	776	2773	146502110	146500168	0.000000e+00	2348.0
26	TraesCS7B01G386600	chr6A	85.788	387	38	12	2887	3260	146499183	146498801	8.480000e-106	394.0
27	TraesCS7B01G386600	chr6A	89.011	273	20	5	334	605	146502604	146502341	2.420000e-86	329.0
28	TraesCS7B01G386600	chr7A	86.191	1709	174	23	776	2471	675115021	675113362	0.000000e+00	1792.0
29	TraesCS7B01G386600	chr7A	87.625	299	28	4	308	605	675115528	675115238	4.030000e-89	339.0
30	TraesCS7B01G386600	chr7A	87.285	291	29	5	2573	2858	675113138	675112851	3.140000e-85	326.0
31	TraesCS7B01G386600	chr7A	82.748	313	28	20	2889	3198	675112429	675112140	4.170000e-64	255.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G386600	chr7B	651451561	651454820	3259	True	6021.000000	6021	100.000000	1	3260	1	chr7B.!!$R2	3259
1	TraesCS7B01G386600	chr7B	651336219	651338364	2145	False	2868.000000	2868	90.985000	558	2688	1	chr7B.!!$F4	2130
2	TraesCS7B01G386600	chr7B	472325904	472326495	591	False	928.000000	928	95.110000	2675	3260	1	chr7B.!!$F1	585
3	TraesCS7B01G386600	chr7B	472392776	472393368	592	False	917.000000	917	94.781000	2675	3260	1	chr7B.!!$F2	585
4	TraesCS7B01G386600	chr7B	651402472	651403716	1244	True	850.000000	850	79.280000	1025	2254	1	chr7B.!!$R1	1229
5	TraesCS7B01G386600	chr7B	472328170	472330144	1974	True	699.500000	1046	83.999000	303	2253	2	chr7B.!!$R3	1950
6	TraesCS7B01G386600	chr7B	472395041	472397013	1972	True	686.500000	1020	83.866000	303	2253	2	chr7B.!!$R4	1950
7	TraesCS7B01G386600	chr7B	651339936	651341858	1922	True	629.500000	911	83.820000	303	2253	2	chr7B.!!$R5	1950
8	TraesCS7B01G386600	chr7B	651302238	651304163	1925	False	243.500000	331	92.398000	1	355	2	chr7B.!!$F5	354
9	TraesCS7B01G386600	chr7D	583982284	583983993	1709	False	2470.000000	2470	92.601000	1516	3260	1	chr7D.!!$F1	1744
10	TraesCS7B01G386600	chr7D	583474128	583479163	5035	True	856.333333	1927	87.004333	308	2858	3	chr7D.!!$R1	2550
11	TraesCS7B01G386600	chr7D	583988583	583989978	1395	True	482.500000	636	85.539000	8	1355	2	chr7D.!!$R2	1347
12	TraesCS7B01G386600	chr7D	583972636	583974127	1491	False	432.966667	787	89.882667	147	1530	3	chr7D.!!$F2	1383
13	TraesCS7B01G386600	chr6A	146498801	146502604	3803	True	1023.666667	2348	87.730000	334	3260	3	chr6A.!!$R1	2926
14	TraesCS7B01G386600	chr7A	675112140	675115528	3388	True	678.000000	1792	85.962250	308	3198	4	chr7A.!!$R1	2890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
47	48	0.099968	CACATGCGCCATCTTCTTGG	59.900	55.0	4.18	0.00	39.94	3.61	F
119	120	0.389391	CCGTGCATCTAACCGGAGAT	59.611	55.0	9.46	3.61	43.01	2.75	F
448	465	0.758734	CAGATTCCACGCATCCCCTA	59.241	55.0	0.00	0.00	0.00	3.53	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1234	1546	1.277557	GGTAGCAGCAGGATCCCATAG	59.722	57.143	8.55	0.00	2.23	R
1463	1775	1.338769	CCACGATTTTCCCTCCGTCTT	60.339	52.381	0.00	32.50	3.01	R
2290	2625	0.327924	TCATGGACCGAAATGCCAGT	59.672	50.000	0.00	34.74	4.00	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	1.458398	GGCCTTCTCCTTTCTCTTGC	58.542	55.000	0.00	0.00	0.00	4.01
46	47	1.063616	CTCACATGCGCCATCTTCTTG	59.936	52.381	4.18	0.00	0.00	3.02
47	48	0.099968	CACATGCGCCATCTTCTTGG	59.900	55.000	4.18	0.00	39.94	3.61
49	50	2.123428	ATGCGCCATCTTCTTGGGC	61.123	57.895	4.18	0.00	44.27	5.36
109	110	0.742281	CTGCTAACAGCCGTGCATCT	60.742	55.000	0.00	0.00	41.51	2.90
110	111	0.534873	TGCTAACAGCCGTGCATCTA	59.465	50.000	0.00	0.00	41.51	1.98
111	112	1.066502	TGCTAACAGCCGTGCATCTAA	60.067	47.619	0.00	0.00	41.51	2.10
113	114	1.933853	CTAACAGCCGTGCATCTAACC	59.066	52.381	0.00	0.00	0.00	2.85
114	115	1.019278	AACAGCCGTGCATCTAACCG	61.019	55.000	0.00	0.00	0.00	4.44
117	118	1.883084	GCCGTGCATCTAACCGGAG	60.883	63.158	9.46	0.00	43.01	4.63
118	119	1.813859	CCGTGCATCTAACCGGAGA	59.186	57.895	9.46	0.43	43.01	3.71
119	120	0.389391	CCGTGCATCTAACCGGAGAT	59.611	55.000	9.46	3.61	43.01	2.75
121	122	2.607282	CCGTGCATCTAACCGGAGATAC	60.607	54.545	9.46	1.94	43.01	2.24
124	125	1.275573	GCATCTAACCGGAGATACCCC	59.724	57.143	9.46	0.00	34.29	4.95
125	126	2.890814	CATCTAACCGGAGATACCCCT	58.109	52.381	9.46	0.00	34.29	4.79
126	127	2.671896	TCTAACCGGAGATACCCCTC	57.328	55.000	9.46	0.00	34.64	4.30
127	128	1.854939	TCTAACCGGAGATACCCCTCA	59.145	52.381	9.46	0.00	34.94	3.86
128	129	2.245546	TCTAACCGGAGATACCCCTCAA	59.754	50.000	9.46	0.00	34.94	3.02
129	130	1.961133	AACCGGAGATACCCCTCAAA	58.039	50.000	9.46	0.00	34.94	2.69
261	270	1.201987	CCCGAATACAAGCGTTTTCCG	60.202	52.381	0.00	0.00	40.40	4.30
268	277	1.802365	ACAAGCGTTTTCCGTACCATC	59.198	47.619	0.00	0.00	39.32	3.51
294	306	2.671070	CTTGACCGTCCTGCCCAT	59.329	61.111	0.00	0.00	0.00	4.00
336	348	4.809496	CCGCAATCCAGCAGCCCT	62.809	66.667	0.00	0.00	0.00	5.19
373	388	2.036098	CCATGGCAGCCCTCAACA	59.964	61.111	9.64	0.00	0.00	3.33
374	389	1.607178	CCATGGCAGCCCTCAACAA	60.607	57.895	9.64	0.00	0.00	2.83
375	390	1.588082	CATGGCAGCCCTCAACAAC	59.412	57.895	9.64	0.00	0.00	3.32
422	439	4.860881	CCCCTGCCGCTCCTCCTA	62.861	72.222	0.00	0.00	0.00	2.94
430	447	2.498941	CGCTCCTCCTAATCGGCCA	61.499	63.158	2.24	0.00	0.00	5.36
435	452	1.971357	TCCTCCTAATCGGCCAGATTC	59.029	52.381	21.00	0.00	45.95	2.52
448	465	0.758734	CAGATTCCACGCATCCCCTA	59.241	55.000	0.00	0.00	0.00	3.53
451	468	2.039084	AGATTCCACGCATCCCCTAATC	59.961	50.000	0.00	0.00	0.00	1.75
474	491	3.017442	CGATCCCCTTTCTTTCCTTTCC	58.983	50.000	0.00	0.00	0.00	3.13
480	497	3.691609	CCCTTTCTTTCCTTTCCGATGAG	59.308	47.826	0.00	0.00	0.00	2.90
508	525	4.723789	AGACCATTGGAGATACTTCCACAT	59.276	41.667	10.37	0.00	46.61	3.21
512	529	4.760530	TTGGAGATACTTCCACATCTGG	57.239	45.455	0.00	0.00	46.61	3.86
540	605	4.157656	CCTATCTCCCTCGATGATGAGTTC	59.842	50.000	0.00	0.00	34.04	3.01
568	633	3.203716	GCCACTGCTATGGGTAAGTAAC	58.796	50.000	8.64	0.00	40.43	2.50
791	1046	2.974698	GGCGCTGTGCTGTCAAGT	60.975	61.111	13.46	0.00	45.43	3.16
796	1051	2.540769	GCGCTGTGCTGTCAAGTTTTTA	60.541	45.455	5.84	0.00	41.73	1.52
869	1157	9.646427	GGTTTGCCAATTTGAATTGTATACTTA	57.354	29.630	13.64	0.00	43.24	2.24
932	1234	1.064357	CAACGTACACGGGCTTGTTTT	59.936	47.619	6.72	0.00	44.95	2.43
992	1301	9.095065	TCTTCCTAAAAGAATATAACGTGAAGC	57.905	33.333	0.00	0.00	0.00	3.86
1023	1332	1.006832	CGGGACCTTATGCAAGTTCG	58.993	55.000	0.00	0.00	0.00	3.95
1167	1479	2.357517	CCATATCGCCAGACGCCC	60.358	66.667	0.00	0.00	43.23	6.13
1266	1578	2.125512	GCTACCACTGAGCACCGG	60.126	66.667	0.00	0.00	39.84	5.28
1434	1746	2.124570	CTCCCGCCAATCACTGGG	60.125	66.667	0.00	0.00	46.54	4.45
1443	1755	2.173519	CCAATCACTGGGTTTGCATCT	58.826	47.619	0.00	0.00	42.17	2.90
1463	1775	1.208706	TGCATCGAGGGGGTTTATGA	58.791	50.000	0.00	0.00	0.00	2.15
1476	1794	3.307904	GGGTTTATGAAGACGGAGGGAAA	60.308	47.826	0.00	0.00	0.00	3.13
1749	2067	0.327924	ATGCGGTGACAATGGAAGGA	59.672	50.000	0.00	0.00	0.00	3.36
1924	2250	1.153329	ACGCTCCGTGGAAACAACA	60.153	52.632	0.00	0.00	46.06	3.33
1971	2297	2.370189	CCTCAAGAGTCAGACAAGGGTT	59.630	50.000	2.66	0.00	0.00	4.11
2260	2589	1.018148	CACGCCGAGTCTAGTCTGAT	58.982	55.000	0.00	0.00	0.00	2.90
2261	2590	1.003331	CACGCCGAGTCTAGTCTGATC	60.003	57.143	0.00	0.00	0.00	2.92
2288	2623	3.201353	TGCTGTAACTTGTAAGTGCCA	57.799	42.857	0.00	0.00	39.66	4.92
2289	2624	3.750371	TGCTGTAACTTGTAAGTGCCAT	58.250	40.909	0.00	0.00	39.66	4.40
2290	2625	4.900684	TGCTGTAACTTGTAAGTGCCATA	58.099	39.130	0.00	0.00	39.66	2.74
2291	2626	4.693566	TGCTGTAACTTGTAAGTGCCATAC	59.306	41.667	0.00	0.00	39.66	2.39
2292	2627	4.935808	GCTGTAACTTGTAAGTGCCATACT	59.064	41.667	0.00	0.00	42.89	2.12
2293	2628	5.163854	GCTGTAACTTGTAAGTGCCATACTG	60.164	44.000	0.00	3.31	40.26	2.74
2294	2629	5.242434	TGTAACTTGTAAGTGCCATACTGG	58.758	41.667	0.00	0.00	40.26	4.00
2308	2643	2.036958	TACTGGCATTTCGGTCCATG	57.963	50.000	0.00	0.00	0.00	3.66
2335	2670	4.904241	AGTAGCATCAGGCCTAATGATTC	58.096	43.478	20.99	11.54	46.50	2.52
2518	2899	1.965643	ACAGACCTACACCGTTGCTTA	59.034	47.619	0.00	0.00	0.00	3.09
2522	2903	1.346722	ACCTACACCGTTGCTTAGCTT	59.653	47.619	5.60	0.00	0.00	3.74
2538	5272	3.694043	AGCTTTTGGTGTTGGTTTGTT	57.306	38.095	0.00	0.00	0.00	2.83
2539	5273	4.810191	AGCTTTTGGTGTTGGTTTGTTA	57.190	36.364	0.00	0.00	0.00	2.41
2544	5278	8.303876	AGCTTTTGGTGTTGGTTTGTTATATAG	58.696	33.333	0.00	0.00	0.00	1.31
2545	5279	8.085909	GCTTTTGGTGTTGGTTTGTTATATAGT	58.914	33.333	0.00	0.00	0.00	2.12
2548	5282	9.570468	TTTGGTGTTGGTTTGTTATATAGTGTA	57.430	29.630	0.00	0.00	0.00	2.90
2710	5815	2.172717	AGTAGTTGTTGCACAGGTCCTT	59.827	45.455	0.00	0.00	0.00	3.36
3207	7893	9.159364	GATCATTAGCATCACTTTAGATATGCA	57.841	33.333	17.05	0.00	45.62	3.96

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	1.004161	AGCAAGAGAAAGGAGAAGGCC	59.996	52.381	0.00	0.00	0.00	5.19
3	4	2.083002	CAGCAAGAGAAAGGAGAAGGC	58.917	52.381	0.00	0.00	0.00	4.35
5	6	2.709213	CCCAGCAAGAGAAAGGAGAAG	58.291	52.381	0.00	0.00	0.00	2.85
6	7	1.271597	GCCCAGCAAGAGAAAGGAGAA	60.272	52.381	0.00	0.00	0.00	2.87
7	8	0.326264	GCCCAGCAAGAGAAAGGAGA	59.674	55.000	0.00	0.00	0.00	3.71
8	9	0.327591	AGCCCAGCAAGAGAAAGGAG	59.672	55.000	0.00	0.00	0.00	3.69
9	10	0.326264	GAGCCCAGCAAGAGAAAGGA	59.674	55.000	0.00	0.00	0.00	3.36
10	11	0.037303	TGAGCCCAGCAAGAGAAAGG	59.963	55.000	0.00	0.00	0.00	3.11
11	12	1.163554	GTGAGCCCAGCAAGAGAAAG	58.836	55.000	0.00	0.00	0.00	2.62
12	13	0.473755	TGTGAGCCCAGCAAGAGAAA	59.526	50.000	0.00	0.00	0.00	2.52
39	40	2.440599	GCCCAAGGCCCAAGAAGA	59.559	61.111	0.00	0.00	44.06	2.87
49	50	2.278330	GCCCAGAAACAGCCCAAGG	61.278	63.158	0.00	0.00	0.00	3.61
102	103	2.288886	GGGTATCTCCGGTTAGATGCAC	60.289	54.545	18.65	13.61	39.54	4.57
109	110	2.852714	TTGAGGGGTATCTCCGGTTA	57.147	50.000	0.00	0.00	37.00	2.85
110	111	1.961133	TTTGAGGGGTATCTCCGGTT	58.039	50.000	0.00	0.00	37.00	4.44
111	112	1.961133	TTTTGAGGGGTATCTCCGGT	58.039	50.000	0.00	0.00	37.00	5.28
140	141	6.096846	CCCAAATCATCTCCGGTTAGATTTTT	59.903	38.462	17.65	11.70	36.94	1.94
261	270	2.111384	TCAAGCTGAGGGAGATGGTAC	58.889	52.381	0.00	0.00	0.00	3.34
268	277	1.216710	GACGGTCAAGCTGAGGGAG	59.783	63.158	2.62	0.00	0.00	4.30
332	344	2.846532	CATATGGGGTGGGAGGGC	59.153	66.667	0.00	0.00	0.00	5.19
336	348	2.780924	GGGGCATATGGGGTGGGA	60.781	66.667	4.56	0.00	0.00	4.37
392	407	1.978617	CAGGGGGATGTGCCACAAC	60.979	63.158	0.00	0.00	44.24	3.32
394	409	4.365111	GCAGGGGGATGTGCCACA	62.365	66.667	0.00	0.00	44.24	4.17
422	439	1.819632	GCGTGGAATCTGGCCGATT	60.820	57.895	18.63	18.63	44.87	3.34
430	447	1.507140	TTAGGGGATGCGTGGAATCT	58.493	50.000	0.00	0.00	0.00	2.40
435	452	1.073199	GGGATTAGGGGATGCGTGG	59.927	63.158	0.00	0.00	0.00	4.94
448	465	2.091830	GGAAAGAAAGGGGATCGGGATT	60.092	50.000	0.00	0.00	0.00	3.01
451	468	0.919710	AGGAAAGAAAGGGGATCGGG	59.080	55.000	0.00	0.00	0.00	5.14
474	491	2.432146	TCCAATGGTCTTCTCCTCATCG	59.568	50.000	0.00	0.00	0.00	3.84
480	497	5.454045	GGAAGTATCTCCAATGGTCTTCTCC	60.454	48.000	0.00	0.00	35.36	3.71
508	525	1.007238	AGGGAGATAGGAGGGCCAGA	61.007	60.000	6.18	0.00	36.29	3.86
512	529	0.040499	ATCGAGGGAGATAGGAGGGC	59.960	60.000	0.00	0.00	0.00	5.19
540	605	1.524621	CATAGCAGTGGCCTTCGGG	60.525	63.158	3.32	0.00	42.56	5.14
568	633	1.883084	GCGACAGATTGCGGTAGGG	60.883	63.158	0.00	0.00	0.00	3.53
635	815	2.712709	TCCGTTGAACAGAACCAAACA	58.287	42.857	0.00	0.00	0.00	2.83
791	1046	6.581712	AGCCACTGAAAGAGCAAAATAAAAA	58.418	32.000	0.00	0.00	38.82	1.94
796	1051	3.225104	TGAGCCACTGAAAGAGCAAAAT	58.775	40.909	0.00	0.00	38.82	1.82
991	1300	1.212751	GTCCCGCCATTGTGAAAGC	59.787	57.895	0.00	0.00	0.00	3.51
992	1301	0.609131	AGGTCCCGCCATTGTGAAAG	60.609	55.000	0.00	0.00	40.61	2.62
1005	1314	1.379527	CCGAACTTGCATAAGGTCCC	58.620	55.000	0.00	0.00	45.85	4.46
1144	1453	3.225210	CGTCTGGCGATATGGGACACA	62.225	57.143	0.00	0.00	43.22	3.72
1167	1479	2.743928	GCCAAGGACACGAGCCAG	60.744	66.667	0.00	0.00	0.00	4.85
1234	1546	1.277557	GGTAGCAGCAGGATCCCATAG	59.722	57.143	8.55	0.00	0.00	2.23
1262	1574	1.457831	GGATCCAGTAGGCTCCGGT	60.458	63.158	6.95	0.00	40.20	5.28
1266	1578	4.040936	TCTATCAGGATCCAGTAGGCTC	57.959	50.000	15.82	0.00	33.74	4.70
1443	1755	1.562008	TCATAAACCCCCTCGATGCAA	59.438	47.619	0.00	0.00	0.00	4.08
1463	1775	1.338769	CCACGATTTTCCCTCCGTCTT	60.339	52.381	0.00	0.00	32.50	3.01
1476	1794	2.223971	CCTGTAACGATAGCCCACGATT	60.224	50.000	0.00	0.00	42.67	3.34
1541	1859	2.861935	ACAACCTTGTCGTAGAAACACG	59.138	45.455	0.00	0.00	39.69	4.49
1626	1944	2.695666	TCCTATCCTTGCGAAAGAGAGG	59.304	50.000	4.13	8.08	36.43	3.69
1924	2250	6.069440	TCCAACCTGTCTATTTCAATCCTGAT	60.069	38.462	0.00	0.00	0.00	2.90
1971	2297	1.675801	CTTCCCTGAGCTCAGTGCA	59.324	57.895	35.47	19.18	45.94	4.57
2019	2345	2.077687	AAATGCCTGGGCTATTCTGG	57.922	50.000	13.05	0.00	42.51	3.86
2184	2513	4.344237	CCACCAGATGGGAAAGCC	57.656	61.111	3.48	0.00	45.95	4.35
2260	2589	3.981071	ACAAGTTACAGCATGGCTAGA	57.019	42.857	0.00	0.00	43.62	2.43
2261	2590	5.063944	CACTTACAAGTTACAGCATGGCTAG	59.936	44.000	0.00	0.00	37.58	3.42
2288	2623	2.172505	TCATGGACCGAAATGCCAGTAT	59.827	45.455	0.00	0.00	34.74	2.12
2289	2624	1.557371	TCATGGACCGAAATGCCAGTA	59.443	47.619	0.00	0.00	34.74	2.74
2290	2625	0.327924	TCATGGACCGAAATGCCAGT	59.672	50.000	0.00	0.00	34.74	4.00
2291	2626	1.683943	ATCATGGACCGAAATGCCAG	58.316	50.000	0.00	0.00	34.74	4.85
2292	2627	2.142356	AATCATGGACCGAAATGCCA	57.858	45.000	0.00	0.00	35.91	4.92
2293	2628	3.632145	ACTTAATCATGGACCGAAATGCC	59.368	43.478	0.00	0.00	0.00	4.40
2294	2629	4.900635	ACTTAATCATGGACCGAAATGC	57.099	40.909	0.00	0.00	0.00	3.56
2295	2630	5.527214	TGCTACTTAATCATGGACCGAAATG	59.473	40.000	0.00	0.00	0.00	2.32
2308	2643	6.467677	TCATTAGGCCTGATGCTACTTAATC	58.532	40.000	28.35	0.00	40.92	1.75
2518	2899	3.694043	AACAAACCAACACCAAAAGCT	57.306	38.095	0.00	0.00	0.00	3.74
2522	2903	8.466617	ACACTATATAACAAACCAACACCAAA	57.533	30.769	0.00	0.00	0.00	3.28
2544	5278	9.546909	CTCTGAAACAATCAAACACATATACAC	57.453	33.333	0.00	0.00	37.67	2.90
2545	5279	9.283768	ACTCTGAAACAATCAAACACATATACA	57.716	29.630	0.00	0.00	37.67	2.29
2655	5756	4.649674	AGTACAAACTCTTGTGTCTCCAGA	59.350	41.667	0.00	0.00	45.53	3.86
2710	5815	4.320129	CGCCTGATACATGTGTTTTGAACA	60.320	41.667	9.11	0.00	39.52	3.18
2813	6674	5.381174	AATCCACAGAAACATCACACATG	57.619	39.130	0.00	0.00	0.00	3.21
2814	6675	6.409524	AAAATCCACAGAAACATCACACAT	57.590	33.333	0.00	0.00	0.00	3.21
2877	7090	7.977853	AGCAATCATCTAAGTTTAAAATGGCAG	59.022	33.333	0.00	0.00	0.00	4.85
2985	7483	7.337184	TGTGTTACTTTCATGTGTTCAACCTTA	59.663	33.333	0.00	0.00	0.00	2.69
3133	7818	5.125417	TCAAGCAACAATATTAGGAGTTGGC	59.875	40.000	14.66	9.15	41.11	4.52
3170	7856	4.963318	TGCTAATGATCCTAGGTTGAGG	57.037	45.455	9.08	0.00	38.03	3.86
3207	7893	3.225104	TGCACAAATCCAAGAGAAGCTT	58.775	40.909	0.00	0.00	37.29	3.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.