Multiple sequence alignment - TraesCS7B01G386500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G386500 chr7B 100.000 3110 0 0 1 3110 651408140 651411249 0.000000e+00 5744.0
1 TraesCS7B01G386500 chr7B 85.063 1426 187 16 782 2190 651274297 651275713 0.000000e+00 1430.0
2 TraesCS7B01G386500 chr7B 81.246 1445 235 24 778 2203 472329507 472328080 0.000000e+00 1134.0
3 TraesCS7B01G386500 chr7B 81.038 1445 235 25 778 2203 472396375 472394951 0.000000e+00 1114.0
4 TraesCS7B01G386500 chr7B 81.145 1363 224 19 854 2198 651341198 651339851 0.000000e+00 1062.0
5 TraesCS7B01G386500 chr7B 85.629 334 41 4 1861 2190 651302457 651302787 8.260000e-91 344.0
6 TraesCS7B01G386500 chr7B 100.000 28 0 0 726 753 651202791 651202818 6.000000e-03 52.8
7 TraesCS7B01G386500 chr7D 94.363 1437 75 3 1018 2451 583994676 583993243 0.000000e+00 2200.0
8 TraesCS7B01G386500 chr7D 84.024 845 121 7 1402 2245 583969293 583970124 0.000000e+00 800.0
9 TraesCS7B01G386500 chr7D 84.250 800 117 5 1405 2203 583986445 583985654 0.000000e+00 771.0
10 TraesCS7B01G386500 chr7D 92.434 304 21 1 724 1027 584002351 584002050 1.710000e-117 433.0
11 TraesCS7B01G386500 chr4B 96.677 662 18 3 2453 3110 630049158 630048497 0.000000e+00 1098.0
12 TraesCS7B01G386500 chr4B 94.419 663 33 3 2452 3110 10447932 10448594 0.000000e+00 1016.0
13 TraesCS7B01G386500 chr4B 86.965 537 46 9 98 616 5010301 5009771 1.610000e-162 582.0
14 TraesCS7B01G386500 chr3B 96.224 662 21 3 2453 3110 760583349 760584010 0.000000e+00 1081.0
15 TraesCS7B01G386500 chr3B 87.151 537 45 7 98 616 357772655 357773185 3.450000e-164 588.0
16 TraesCS7B01G386500 chr3B 86.965 537 43 10 98 616 676953923 676954450 2.080000e-161 579.0
17 TraesCS7B01G386500 chr4A 95.619 662 25 3 2453 3110 714898159 714898820 0.000000e+00 1059.0
18 TraesCS7B01G386500 chr4A 94.127 664 35 3 2451 3110 618267091 618267754 0.000000e+00 1007.0
19 TraesCS7B01G386500 chrUn 95.023 663 26 6 2452 3110 314279467 314278808 0.000000e+00 1035.0
20 TraesCS7B01G386500 chr6B 94.461 668 31 5 2448 3110 161354522 161355188 0.000000e+00 1024.0
21 TraesCS7B01G386500 chr6B 94.419 663 33 3 2452 3110 694490710 694491372 0.000000e+00 1016.0
22 TraesCS7B01G386500 chr6B 84.572 538 42 18 98 616 545467705 545468220 2.150000e-136 496.0
23 TraesCS7B01G386500 chr1B 94.012 668 36 3 2447 3110 553896553 553895886 0.000000e+00 1009.0
24 TraesCS7B01G386500 chr6D 89.524 630 52 5 1 617 387810156 387809528 0.000000e+00 785.0
25 TraesCS7B01G386500 chr3A 89.492 590 50 3 1 578 41174756 41175345 0.000000e+00 736.0
26 TraesCS7B01G386500 chr3A 86.984 630 60 9 3 619 32885180 32884560 0.000000e+00 689.0
27 TraesCS7B01G386500 chr2A 86.711 602 54 14 28 616 752769798 752770386 0.000000e+00 645.0
28 TraesCS7B01G386500 chr2A 86.235 603 57 14 28 617 3778328 3777739 5.660000e-177 630.0
29 TraesCS7B01G386500 chr2A 85.366 574 57 14 56 616 773723582 773723023 1.250000e-158 569.0
30 TraesCS7B01G386500 chr2A 86.905 504 54 3 1 492 376084880 376084377 3.500000e-154 555.0
31 TraesCS7B01G386500 chr2A 88.889 72 8 0 1 72 559672687 559672616 4.270000e-14 89.8
32 TraesCS7B01G386500 chr2A 87.838 74 9 0 1 74 324301699 324301772 1.540000e-13 87.9
33 TraesCS7B01G386500 chr2B 87.523 537 43 7 98 616 392616135 392615605 1.600000e-167 599.0
34 TraesCS7B01G386500 chr2B 86.592 537 48 7 98 616 392649677 392649147 3.480000e-159 571.0
35 TraesCS7B01G386500 chr2B 86.059 538 45 11 98 617 512352619 512352094 4.530000e-153 551.0
36 TraesCS7B01G386500 chr7A 87.337 537 44 7 98 616 507137345 507137875 7.430000e-166 593.0
37 TraesCS7B01G386500 chr1A 85.739 575 56 13 56 617 61347432 61346871 4.470000e-163 584.0
38 TraesCS7B01G386500 chr5B 85.269 577 58 14 53 616 661890366 661890928 1.250000e-158 569.0
39 TraesCS7B01G386500 chr6A 79.337 513 63 19 1869 2371 146496823 146497302 1.390000e-83 320.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G386500 chr7B 651408140 651411249 3109 False 5744 5744 100.000 1 3110 1 chr7B.!!$F4 3109
1 TraesCS7B01G386500 chr7B 651274297 651275713 1416 False 1430 1430 85.063 782 2190 1 chr7B.!!$F2 1408
2 TraesCS7B01G386500 chr7B 472328080 472329507 1427 True 1134 1134 81.246 778 2203 1 chr7B.!!$R1 1425
3 TraesCS7B01G386500 chr7B 472394951 472396375 1424 True 1114 1114 81.038 778 2203 1 chr7B.!!$R2 1425
4 TraesCS7B01G386500 chr7B 651339851 651341198 1347 True 1062 1062 81.145 854 2198 1 chr7B.!!$R3 1344
5 TraesCS7B01G386500 chr7D 583993243 583994676 1433 True 2200 2200 94.363 1018 2451 1 chr7D.!!$R2 1433
6 TraesCS7B01G386500 chr7D 583969293 583970124 831 False 800 800 84.024 1402 2245 1 chr7D.!!$F1 843
7 TraesCS7B01G386500 chr7D 583985654 583986445 791 True 771 771 84.250 1405 2203 1 chr7D.!!$R1 798
8 TraesCS7B01G386500 chr4B 630048497 630049158 661 True 1098 1098 96.677 2453 3110 1 chr4B.!!$R2 657
9 TraesCS7B01G386500 chr4B 10447932 10448594 662 False 1016 1016 94.419 2452 3110 1 chr4B.!!$F1 658
10 TraesCS7B01G386500 chr4B 5009771 5010301 530 True 582 582 86.965 98 616 1 chr4B.!!$R1 518
11 TraesCS7B01G386500 chr3B 760583349 760584010 661 False 1081 1081 96.224 2453 3110 1 chr3B.!!$F3 657
12 TraesCS7B01G386500 chr3B 357772655 357773185 530 False 588 588 87.151 98 616 1 chr3B.!!$F1 518
13 TraesCS7B01G386500 chr3B 676953923 676954450 527 False 579 579 86.965 98 616 1 chr3B.!!$F2 518
14 TraesCS7B01G386500 chr4A 714898159 714898820 661 False 1059 1059 95.619 2453 3110 1 chr4A.!!$F2 657
15 TraesCS7B01G386500 chr4A 618267091 618267754 663 False 1007 1007 94.127 2451 3110 1 chr4A.!!$F1 659
16 TraesCS7B01G386500 chrUn 314278808 314279467 659 True 1035 1035 95.023 2452 3110 1 chrUn.!!$R1 658
17 TraesCS7B01G386500 chr6B 161354522 161355188 666 False 1024 1024 94.461 2448 3110 1 chr6B.!!$F1 662
18 TraesCS7B01G386500 chr6B 694490710 694491372 662 False 1016 1016 94.419 2452 3110 1 chr6B.!!$F3 658
19 TraesCS7B01G386500 chr6B 545467705 545468220 515 False 496 496 84.572 98 616 1 chr6B.!!$F2 518
20 TraesCS7B01G386500 chr1B 553895886 553896553 667 True 1009 1009 94.012 2447 3110 1 chr1B.!!$R1 663
21 TraesCS7B01G386500 chr6D 387809528 387810156 628 True 785 785 89.524 1 617 1 chr6D.!!$R1 616
22 TraesCS7B01G386500 chr3A 41174756 41175345 589 False 736 736 89.492 1 578 1 chr3A.!!$F1 577
23 TraesCS7B01G386500 chr3A 32884560 32885180 620 True 689 689 86.984 3 619 1 chr3A.!!$R1 616
24 TraesCS7B01G386500 chr2A 752769798 752770386 588 False 645 645 86.711 28 616 1 chr2A.!!$F2 588
25 TraesCS7B01G386500 chr2A 3777739 3778328 589 True 630 630 86.235 28 617 1 chr2A.!!$R1 589
26 TraesCS7B01G386500 chr2A 773723023 773723582 559 True 569 569 85.366 56 616 1 chr2A.!!$R4 560
27 TraesCS7B01G386500 chr2A 376084377 376084880 503 True 555 555 86.905 1 492 1 chr2A.!!$R2 491
28 TraesCS7B01G386500 chr2B 392615605 392616135 530 True 599 599 87.523 98 616 1 chr2B.!!$R1 518
29 TraesCS7B01G386500 chr2B 392649147 392649677 530 True 571 571 86.592 98 616 1 chr2B.!!$R2 518
30 TraesCS7B01G386500 chr2B 512352094 512352619 525 True 551 551 86.059 98 617 1 chr2B.!!$R3 519
31 TraesCS7B01G386500 chr7A 507137345 507137875 530 False 593 593 87.337 98 616 1 chr7A.!!$F1 518
32 TraesCS7B01G386500 chr1A 61346871 61347432 561 True 584 584 85.739 56 617 1 chr1A.!!$R1 561
33 TraesCS7B01G386500 chr5B 661890366 661890928 562 False 569 569 85.269 53 616 1 chr5B.!!$F1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 976 0.392336 GCATCCTGCTTCTCCTCGAT 59.608 55.0 0.0 0.0 40.96 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2281 2344 0.250467 CTTGTGGTGGGACAGGACAG 60.25 60.0 0.0 0.0 41.8 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 77 3.476419 CCGTAGGCCGACCCCAAT 61.476 66.667 10.71 0.00 46.14 3.16
77 80 2.690881 TAGGCCGACCCCAATGCT 60.691 61.111 0.00 0.00 36.11 3.79
78 81 1.383386 TAGGCCGACCCCAATGCTA 60.383 57.895 0.00 0.00 36.11 3.49
79 82 1.407656 TAGGCCGACCCCAATGCTAG 61.408 60.000 0.00 0.00 36.11 3.42
88 91 1.449601 CCAATGCTAGGCCGAACGT 60.450 57.895 0.00 0.00 0.00 3.99
308 322 3.765051 GGATCTGGATCGAGCCGA 58.235 61.111 16.16 15.34 41.13 5.54
310 324 1.456196 GGATCTGGATCGAGCCGACA 61.456 60.000 16.16 0.84 39.18 4.35
317 331 2.337749 GATCGAGCCGACACCGTCAT 62.338 60.000 0.00 0.00 39.18 3.06
336 350 3.640407 ACACCAGCCGAGCACCAT 61.640 61.111 0.00 0.00 0.00 3.55
340 354 2.125552 CAGCCGAGCACCATCGAA 60.126 61.111 0.00 0.00 45.56 3.71
342 356 3.567797 GCCGAGCACCATCGAAGC 61.568 66.667 0.00 0.00 45.56 3.86
433 447 2.126228 CTAGAACGCCGCGACCAA 60.126 61.111 21.79 1.10 0.00 3.67
546 571 2.123640 CGGGAGGAGGAGGAGGAC 60.124 72.222 0.00 0.00 0.00 3.85
548 573 1.075600 GGGAGGAGGAGGAGGACAG 60.076 68.421 0.00 0.00 0.00 3.51
549 574 1.585651 GGGAGGAGGAGGAGGACAGA 61.586 65.000 0.00 0.00 0.00 3.41
623 648 4.766272 CGGAGGAGGAGTCCAGAA 57.234 61.111 12.86 0.00 46.80 3.02
624 649 3.215671 CGGAGGAGGAGTCCAGAAT 57.784 57.895 12.86 0.00 46.80 2.40
625 650 1.490574 CGGAGGAGGAGTCCAGAATT 58.509 55.000 12.86 0.00 46.80 2.17
626 651 1.834263 CGGAGGAGGAGTCCAGAATTT 59.166 52.381 12.86 0.00 46.80 1.82
627 652 2.237392 CGGAGGAGGAGTCCAGAATTTT 59.763 50.000 12.86 0.00 46.80 1.82
628 653 3.307762 CGGAGGAGGAGTCCAGAATTTTT 60.308 47.826 12.86 0.00 46.80 1.94
629 654 4.265893 GGAGGAGGAGTCCAGAATTTTTC 58.734 47.826 12.86 0.00 46.80 2.29
630 655 4.265893 GAGGAGGAGTCCAGAATTTTTCC 58.734 47.826 12.86 6.83 46.80 3.13
631 656 3.919554 AGGAGGAGTCCAGAATTTTTCCT 59.080 43.478 12.86 9.20 46.80 3.36
632 657 4.355287 AGGAGGAGTCCAGAATTTTTCCTT 59.645 41.667 12.86 0.00 46.80 3.36
633 658 5.080337 GGAGGAGTCCAGAATTTTTCCTTT 58.920 41.667 12.86 0.00 43.31 3.11
634 659 5.540337 GGAGGAGTCCAGAATTTTTCCTTTT 59.460 40.000 12.86 0.00 43.31 2.27
635 660 6.294787 GGAGGAGTCCAGAATTTTTCCTTTTC 60.295 42.308 12.86 0.00 43.31 2.29
636 661 5.241728 AGGAGTCCAGAATTTTTCCTTTTCG 59.758 40.000 12.86 0.00 31.19 3.46
637 662 5.009710 GGAGTCCAGAATTTTTCCTTTTCGT 59.990 40.000 3.60 0.00 0.00 3.85
638 663 6.206048 GGAGTCCAGAATTTTTCCTTTTCGTA 59.794 38.462 3.60 0.00 0.00 3.43
639 664 7.255346 GGAGTCCAGAATTTTTCCTTTTCGTAA 60.255 37.037 3.60 0.00 0.00 3.18
640 665 7.649057 AGTCCAGAATTTTTCCTTTTCGTAAG 58.351 34.615 0.00 0.00 0.00 2.34
641 666 7.284716 AGTCCAGAATTTTTCCTTTTCGTAAGT 59.715 33.333 0.00 0.00 39.48 2.24
642 667 7.919091 GTCCAGAATTTTTCCTTTTCGTAAGTT 59.081 33.333 0.00 0.00 39.48 2.66
643 668 8.132995 TCCAGAATTTTTCCTTTTCGTAAGTTC 58.867 33.333 0.00 0.00 39.48 3.01
644 669 8.135529 CCAGAATTTTTCCTTTTCGTAAGTTCT 58.864 33.333 0.00 0.00 39.48 3.01
645 670 9.170584 CAGAATTTTTCCTTTTCGTAAGTTCTC 57.829 33.333 0.00 0.00 39.48 2.87
646 671 8.899771 AGAATTTTTCCTTTTCGTAAGTTCTCA 58.100 29.630 0.00 0.00 39.48 3.27
647 672 9.170584 GAATTTTTCCTTTTCGTAAGTTCTCAG 57.829 33.333 0.00 0.00 39.48 3.35
648 673 7.852971 TTTTTCCTTTTCGTAAGTTCTCAGA 57.147 32.000 0.00 0.00 39.48 3.27
649 674 7.852971 TTTTCCTTTTCGTAAGTTCTCAGAA 57.147 32.000 0.00 0.00 39.48 3.02
650 675 8.446599 TTTTCCTTTTCGTAAGTTCTCAGAAT 57.553 30.769 0.00 0.00 39.48 2.40
651 676 7.653767 TTCCTTTTCGTAAGTTCTCAGAATC 57.346 36.000 0.00 0.00 39.48 2.52
652 677 6.755206 TCCTTTTCGTAAGTTCTCAGAATCA 58.245 36.000 0.00 0.00 39.48 2.57
653 678 6.645415 TCCTTTTCGTAAGTTCTCAGAATCAC 59.355 38.462 0.00 0.00 39.48 3.06
654 679 6.423905 CCTTTTCGTAAGTTCTCAGAATCACA 59.576 38.462 0.00 0.00 39.48 3.58
655 680 7.359598 CCTTTTCGTAAGTTCTCAGAATCACAG 60.360 40.741 0.00 0.00 39.48 3.66
656 681 4.486090 TCGTAAGTTCTCAGAATCACAGC 58.514 43.478 0.00 0.00 39.48 4.40
657 682 3.614616 CGTAAGTTCTCAGAATCACAGCC 59.385 47.826 0.00 0.00 0.00 4.85
658 683 3.777106 AAGTTCTCAGAATCACAGCCA 57.223 42.857 0.00 0.00 0.00 4.75
659 684 3.996921 AGTTCTCAGAATCACAGCCAT 57.003 42.857 0.00 0.00 0.00 4.40
660 685 5.426689 AAGTTCTCAGAATCACAGCCATA 57.573 39.130 0.00 0.00 0.00 2.74
661 686 5.627182 AGTTCTCAGAATCACAGCCATAT 57.373 39.130 0.00 0.00 0.00 1.78
662 687 5.999044 AGTTCTCAGAATCACAGCCATATT 58.001 37.500 0.00 0.00 0.00 1.28
663 688 6.421485 AGTTCTCAGAATCACAGCCATATTT 58.579 36.000 0.00 0.00 0.00 1.40
664 689 6.888632 AGTTCTCAGAATCACAGCCATATTTT 59.111 34.615 0.00 0.00 0.00 1.82
665 690 6.932356 TCTCAGAATCACAGCCATATTTTC 57.068 37.500 0.00 0.00 0.00 2.29
666 691 6.656902 TCTCAGAATCACAGCCATATTTTCT 58.343 36.000 0.00 0.00 0.00 2.52
667 692 7.795047 TCTCAGAATCACAGCCATATTTTCTA 58.205 34.615 0.00 0.00 0.00 2.10
668 693 8.267183 TCTCAGAATCACAGCCATATTTTCTAA 58.733 33.333 0.00 0.00 0.00 2.10
669 694 8.806429 TCAGAATCACAGCCATATTTTCTAAA 57.194 30.769 0.00 0.00 0.00 1.85
670 695 8.896744 TCAGAATCACAGCCATATTTTCTAAAG 58.103 33.333 0.00 0.00 0.00 1.85
671 696 8.896744 CAGAATCACAGCCATATTTTCTAAAGA 58.103 33.333 0.00 0.00 0.00 2.52
672 697 9.638176 AGAATCACAGCCATATTTTCTAAAGAT 57.362 29.630 0.00 0.00 0.00 2.40
673 698 9.890352 GAATCACAGCCATATTTTCTAAAGATC 57.110 33.333 0.00 0.00 0.00 2.75
674 699 7.807977 TCACAGCCATATTTTCTAAAGATCC 57.192 36.000 0.00 0.00 0.00 3.36
675 700 7.345691 TCACAGCCATATTTTCTAAAGATCCA 58.654 34.615 0.00 0.00 0.00 3.41
676 701 7.833682 TCACAGCCATATTTTCTAAAGATCCAA 59.166 33.333 0.00 0.00 0.00 3.53
677 702 8.636213 CACAGCCATATTTTCTAAAGATCCAAT 58.364 33.333 0.00 0.00 0.00 3.16
678 703 9.205513 ACAGCCATATTTTCTAAAGATCCAATT 57.794 29.630 0.00 0.00 0.00 2.32
706 731 9.685276 TTATGGTCATATTTTCAGAATCACAGT 57.315 29.630 0.00 0.00 0.00 3.55
707 732 7.615582 TGGTCATATTTTCAGAATCACAGTC 57.384 36.000 0.00 0.00 0.00 3.51
708 733 7.167535 TGGTCATATTTTCAGAATCACAGTCA 58.832 34.615 0.00 0.00 0.00 3.41
709 734 7.830697 TGGTCATATTTTCAGAATCACAGTCAT 59.169 33.333 0.00 0.00 0.00 3.06
710 735 9.330063 GGTCATATTTTCAGAATCACAGTCATA 57.670 33.333 0.00 0.00 0.00 2.15
716 741 8.868522 TTTTCAGAATCACAGTCATATTTCCT 57.131 30.769 0.00 0.00 0.00 3.36
717 742 9.958180 TTTTCAGAATCACAGTCATATTTCCTA 57.042 29.630 0.00 0.00 0.00 2.94
718 743 9.958180 TTTCAGAATCACAGTCATATTTCCTAA 57.042 29.630 0.00 0.00 0.00 2.69
748 773 8.994429 ATAAGAGCCTATACAGATTGAAATCG 57.006 34.615 0.00 0.00 40.35 3.34
749 774 5.788450 AGAGCCTATACAGATTGAAATCGG 58.212 41.667 2.19 2.19 40.35 4.18
750 775 5.305644 AGAGCCTATACAGATTGAAATCGGT 59.694 40.000 12.39 12.39 44.19 4.69
751 776 5.930135 AGCCTATACAGATTGAAATCGGTT 58.070 37.500 12.88 5.59 40.17 4.44
752 777 6.357367 AGCCTATACAGATTGAAATCGGTTT 58.643 36.000 12.88 0.00 40.17 3.27
753 778 6.483640 AGCCTATACAGATTGAAATCGGTTTC 59.516 38.462 14.35 14.35 40.17 2.78
754 779 6.483640 GCCTATACAGATTGAAATCGGTTTCT 59.516 38.462 21.13 2.57 40.17 2.52
755 780 7.307455 GCCTATACAGATTGAAATCGGTTTCTC 60.307 40.741 21.13 11.78 40.17 2.87
756 781 7.710907 CCTATACAGATTGAAATCGGTTTCTCA 59.289 37.037 21.13 9.10 40.17 3.27
757 782 5.869753 ACAGATTGAAATCGGTTTCTCAG 57.130 39.130 21.13 11.06 40.17 3.35
758 783 5.308825 ACAGATTGAAATCGGTTTCTCAGT 58.691 37.500 21.13 11.64 40.17 3.41
759 784 5.765182 ACAGATTGAAATCGGTTTCTCAGTT 59.235 36.000 21.13 2.70 40.17 3.16
760 785 6.263168 ACAGATTGAAATCGGTTTCTCAGTTT 59.737 34.615 21.13 0.54 40.17 2.66
761 786 6.580041 CAGATTGAAATCGGTTTCTCAGTTTG 59.420 38.462 21.13 8.99 43.30 2.93
762 787 6.486657 AGATTGAAATCGGTTTCTCAGTTTGA 59.513 34.615 21.13 0.00 43.30 2.69
763 788 6.443934 TTGAAATCGGTTTCTCAGTTTGAA 57.556 33.333 21.13 2.76 43.30 2.69
764 789 6.633500 TGAAATCGGTTTCTCAGTTTGAAT 57.367 33.333 21.13 0.00 43.30 2.57
765 790 6.668323 TGAAATCGGTTTCTCAGTTTGAATC 58.332 36.000 21.13 0.00 43.30 2.52
766 791 4.928661 ATCGGTTTCTCAGTTTGAATCG 57.071 40.909 0.00 0.00 0.00 3.34
767 792 3.724374 TCGGTTTCTCAGTTTGAATCGT 58.276 40.909 0.00 0.00 0.00 3.73
768 793 4.873817 TCGGTTTCTCAGTTTGAATCGTA 58.126 39.130 0.00 0.00 0.00 3.43
769 794 5.475719 TCGGTTTCTCAGTTTGAATCGTAT 58.524 37.500 0.00 0.00 0.00 3.06
770 795 6.623486 TCGGTTTCTCAGTTTGAATCGTATA 58.377 36.000 0.00 0.00 0.00 1.47
771 796 6.529125 TCGGTTTCTCAGTTTGAATCGTATAC 59.471 38.462 0.00 0.00 0.00 1.47
772 797 6.309494 CGGTTTCTCAGTTTGAATCGTATACA 59.691 38.462 3.32 0.00 0.00 2.29
773 798 7.010183 CGGTTTCTCAGTTTGAATCGTATACAT 59.990 37.037 3.32 0.00 0.00 2.29
774 799 8.665685 GGTTTCTCAGTTTGAATCGTATACATT 58.334 33.333 3.32 2.33 0.00 2.71
834 865 8.615878 TTGTGCCGTTATATAAATCTGCTTAT 57.384 30.769 0.00 0.00 0.00 1.73
883 914 7.687941 TTTTTCTCAATGACAGGACCTTATC 57.312 36.000 0.00 0.00 0.00 1.75
921 952 2.136878 CCTCCCCACCGATCTCCTG 61.137 68.421 0.00 0.00 0.00 3.86
942 973 1.227497 CCGCATCCTGCTTCTCCTC 60.227 63.158 0.00 0.00 42.25 3.71
945 976 0.392336 GCATCCTGCTTCTCCTCGAT 59.608 55.000 0.00 0.00 40.96 3.59
960 991 0.744874 TCGATTTACCCGAGGCTCTG 59.255 55.000 13.50 5.88 0.00 3.35
993 1024 4.758251 TGCCCGTCATGGTGCTCG 62.758 66.667 0.00 0.00 35.60 5.03
999 1030 3.785859 TCATGGTGCTCGGCCTCC 61.786 66.667 0.00 0.00 0.00 4.30
1303 1357 1.219124 GGCTTCTCCTCGTGCATCA 59.781 57.895 0.00 0.00 0.00 3.07
1363 1417 3.383505 TCGTTATAGGTGTCTCCATGGTG 59.616 47.826 12.58 9.91 39.02 4.17
1451 1508 2.284625 TCCATCTGCCGGTCCTGT 60.285 61.111 1.90 0.00 0.00 4.00
1472 1529 0.037975 GTTGCTTTGGCCATCCACTG 60.038 55.000 6.09 0.00 43.33 3.66
1539 1596 2.735134 GCGACAAGTTTCGGTGATAAGT 59.265 45.455 8.73 0.00 39.50 2.24
1544 1601 6.530534 CGACAAGTTTCGGTGATAAGTAGAAT 59.469 38.462 0.00 0.00 35.26 2.40
1575 1634 2.093306 TTGCCGATTGTGTCTACCTG 57.907 50.000 0.00 0.00 0.00 4.00
1593 1652 0.100682 TGCGAGGCAGATTCTACGTC 59.899 55.000 0.00 0.00 33.32 4.34
1844 1903 2.123428 TAGGAGTAAGCCCCGCGAC 61.123 63.158 8.23 0.00 0.00 5.19
1890 1950 2.829592 GGACAGAATAGCCCGGGG 59.170 66.667 25.28 9.31 0.00 5.73
2111 2174 2.440796 CATGCCGGGCCTGTGATT 60.441 61.111 17.97 0.00 0.00 2.57
2131 2194 5.421056 TGATTACTTAGGAACCATGTCGACT 59.579 40.000 17.92 0.00 0.00 4.18
2159 2222 2.221704 TTTCGTGCTGCATGCGTACG 62.222 55.000 30.68 30.68 46.63 3.67
2160 2223 3.178592 CGTGCTGCATGCGTACGA 61.179 61.111 31.88 10.22 46.63 3.43
2203 2266 7.970614 GGCTGTTTTCTTCTAAATTCTGTATGG 59.029 37.037 0.00 0.00 0.00 2.74
2229 2292 5.241403 AGATTGATGAGTTGTGTTGGGTA 57.759 39.130 0.00 0.00 0.00 3.69
2281 2344 5.008415 AGCTAGCAATCATGAGTTTGTATGC 59.992 40.000 18.83 10.61 32.94 3.14
2337 2400 4.000988 AGGTTAGGTTTAGATGTTGCACG 58.999 43.478 0.00 0.00 0.00 5.34
2349 2412 5.853936 AGATGTTGCACGGAGCTAAATATA 58.146 37.500 3.79 0.00 45.94 0.86
2395 2458 6.758254 CCTGATCTTAAAAAGAAAAGGCCAA 58.242 36.000 5.01 0.00 41.63 4.52
2400 2463 5.362430 TCTTAAAAAGAAAAGGCCAAGCTGA 59.638 36.000 5.01 0.00 33.83 4.26
2522 2585 7.846107 CGATGCATACGGCTCATATTATTAAAC 59.154 37.037 0.00 0.00 45.15 2.01
2569 2633 6.475727 CGAAAGGTCGTAGTACAATCATCAAT 59.524 38.462 0.38 0.00 42.53 2.57
2579 2643 9.922305 GTAGTACAATCATCAATAAAAGCTCAC 57.078 33.333 0.00 0.00 0.00 3.51
2582 2646 9.624697 GTACAATCATCAATAAAAGCTCACAAA 57.375 29.630 0.00 0.00 0.00 2.83
2660 2727 2.036958 TTACATGACCGCCATCCAAG 57.963 50.000 0.00 0.00 31.94 3.61
2850 2917 2.091720 TCTGCAGTTCCATATTGCCCAT 60.092 45.455 14.67 0.00 37.03 4.00
2886 2953 0.240945 CAACCCGAATGTGTCTTGCC 59.759 55.000 0.00 0.00 0.00 4.52
2904 2971 0.464373 CCATGTCAGAATCCACCCCG 60.464 60.000 0.00 0.00 0.00 5.73
2967 3034 9.807649 GGCTGATTAATATTAAAGGCAATATGG 57.192 33.333 20.46 7.62 32.62 2.74
3003 3070 3.627395 ATCTTAGCCAACGGACAATCA 57.373 42.857 0.00 0.00 0.00 2.57
3032 3099 7.272037 AGAGGTGTTTGATGTTTTCGTTATT 57.728 32.000 0.00 0.00 0.00 1.40
3050 3117 7.837505 TCGTTATTATCACAAAAGCTACATCG 58.162 34.615 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.690881 TAGCATTGGGGTCGGCCT 60.691 61.111 5.77 0.00 34.45 5.19
172 179 0.117140 TCCCCTCCTCTTCTTCAGCA 59.883 55.000 0.00 0.00 0.00 4.41
308 322 1.301716 GCTGGTGTGATGACGGTGT 60.302 57.895 0.00 0.00 0.00 4.16
310 324 2.347490 GGCTGGTGTGATGACGGT 59.653 61.111 0.00 0.00 0.00 4.83
317 331 4.314440 GGTGCTCGGCTGGTGTGA 62.314 66.667 0.00 0.00 0.00 3.58
336 350 4.081185 TGATGGGCTGCGCTTCGA 62.081 61.111 21.69 11.97 0.00 3.71
417 431 1.079681 ATTTGGTCGCGGCGTTCTA 60.080 52.632 22.90 11.74 0.00 2.10
546 571 1.079543 CGCCTCACCACCTCTTCTG 60.080 63.158 0.00 0.00 0.00 3.02
548 573 2.266055 CCGCCTCACCACCTCTTC 59.734 66.667 0.00 0.00 0.00 2.87
549 574 4.021925 GCCGCCTCACCACCTCTT 62.022 66.667 0.00 0.00 0.00 2.85
607 632 4.265893 GAAAAATTCTGGACTCCTCCTCC 58.734 47.826 0.00 0.00 37.48 4.30
619 644 9.170584 GAGAACTTACGAAAAGGAAAAATTCTG 57.829 33.333 0.00 0.00 0.00 3.02
620 645 8.899771 TGAGAACTTACGAAAAGGAAAAATTCT 58.100 29.630 0.00 0.00 0.00 2.40
621 646 9.170584 CTGAGAACTTACGAAAAGGAAAAATTC 57.829 33.333 0.00 0.00 0.00 2.17
622 647 8.899771 TCTGAGAACTTACGAAAAGGAAAAATT 58.100 29.630 0.00 0.00 0.00 1.82
623 648 8.446599 TCTGAGAACTTACGAAAAGGAAAAAT 57.553 30.769 0.00 0.00 0.00 1.82
624 649 7.852971 TCTGAGAACTTACGAAAAGGAAAAA 57.147 32.000 0.00 0.00 0.00 1.94
625 650 7.852971 TTCTGAGAACTTACGAAAAGGAAAA 57.147 32.000 0.00 0.00 0.00 2.29
626 651 7.713507 TGATTCTGAGAACTTACGAAAAGGAAA 59.286 33.333 0.00 0.00 0.00 3.13
627 652 7.170998 GTGATTCTGAGAACTTACGAAAAGGAA 59.829 37.037 0.00 0.00 0.00 3.36
628 653 6.645415 GTGATTCTGAGAACTTACGAAAAGGA 59.355 38.462 0.00 0.00 0.00 3.36
629 654 6.423905 TGTGATTCTGAGAACTTACGAAAAGG 59.576 38.462 0.00 0.00 0.00 3.11
630 655 7.408132 TGTGATTCTGAGAACTTACGAAAAG 57.592 36.000 0.00 0.00 0.00 2.27
631 656 6.073765 GCTGTGATTCTGAGAACTTACGAAAA 60.074 38.462 0.00 0.00 0.00 2.29
632 657 5.405571 GCTGTGATTCTGAGAACTTACGAAA 59.594 40.000 0.00 0.00 0.00 3.46
633 658 4.923871 GCTGTGATTCTGAGAACTTACGAA 59.076 41.667 0.00 0.00 0.00 3.85
634 659 4.486090 GCTGTGATTCTGAGAACTTACGA 58.514 43.478 0.00 0.00 0.00 3.43
635 660 3.614616 GGCTGTGATTCTGAGAACTTACG 59.385 47.826 0.00 0.00 0.00 3.18
636 661 4.569943 TGGCTGTGATTCTGAGAACTTAC 58.430 43.478 0.00 0.00 0.00 2.34
637 662 4.890158 TGGCTGTGATTCTGAGAACTTA 57.110 40.909 0.00 0.00 0.00 2.24
638 663 3.777106 TGGCTGTGATTCTGAGAACTT 57.223 42.857 0.00 0.00 0.00 2.66
639 664 3.996921 ATGGCTGTGATTCTGAGAACT 57.003 42.857 0.00 0.00 0.00 3.01
640 665 6.690194 AAATATGGCTGTGATTCTGAGAAC 57.310 37.500 0.00 0.00 0.00 3.01
641 666 7.114754 AGAAAATATGGCTGTGATTCTGAGAA 58.885 34.615 0.00 0.00 0.00 2.87
642 667 6.656902 AGAAAATATGGCTGTGATTCTGAGA 58.343 36.000 0.00 0.00 0.00 3.27
643 668 6.939132 AGAAAATATGGCTGTGATTCTGAG 57.061 37.500 0.00 0.00 0.00 3.35
644 669 8.806429 TTTAGAAAATATGGCTGTGATTCTGA 57.194 30.769 0.00 0.00 0.00 3.27
645 670 8.896744 TCTTTAGAAAATATGGCTGTGATTCTG 58.103 33.333 0.00 0.00 0.00 3.02
646 671 9.638176 ATCTTTAGAAAATATGGCTGTGATTCT 57.362 29.630 0.00 0.00 0.00 2.40
647 672 9.890352 GATCTTTAGAAAATATGGCTGTGATTC 57.110 33.333 0.00 0.00 0.00 2.52
648 673 8.854117 GGATCTTTAGAAAATATGGCTGTGATT 58.146 33.333 0.00 0.00 0.00 2.57
649 674 8.000709 TGGATCTTTAGAAAATATGGCTGTGAT 58.999 33.333 0.00 0.00 0.00 3.06
650 675 7.345691 TGGATCTTTAGAAAATATGGCTGTGA 58.654 34.615 0.00 0.00 0.00 3.58
651 676 7.572523 TGGATCTTTAGAAAATATGGCTGTG 57.427 36.000 0.00 0.00 0.00 3.66
652 677 8.773033 ATTGGATCTTTAGAAAATATGGCTGT 57.227 30.769 0.00 0.00 0.00 4.40
680 705 9.685276 ACTGTGATTCTGAAAATATGACCATAA 57.315 29.630 0.00 0.00 0.00 1.90
681 706 9.330063 GACTGTGATTCTGAAAATATGACCATA 57.670 33.333 0.00 0.00 0.00 2.74
682 707 7.830697 TGACTGTGATTCTGAAAATATGACCAT 59.169 33.333 0.00 0.00 0.00 3.55
683 708 7.167535 TGACTGTGATTCTGAAAATATGACCA 58.832 34.615 0.00 0.00 0.00 4.02
684 709 7.615582 TGACTGTGATTCTGAAAATATGACC 57.384 36.000 0.00 0.00 0.00 4.02
690 715 9.471702 AGGAAATATGACTGTGATTCTGAAAAT 57.528 29.630 0.00 0.00 0.00 1.82
691 716 8.868522 AGGAAATATGACTGTGATTCTGAAAA 57.131 30.769 0.00 0.00 0.00 2.29
692 717 9.958180 TTAGGAAATATGACTGTGATTCTGAAA 57.042 29.630 0.00 0.00 0.00 2.69
723 748 8.037758 CCGATTTCAATCTGTATAGGCTCTTAT 58.962 37.037 0.00 0.00 33.24 1.73
724 749 7.015292 ACCGATTTCAATCTGTATAGGCTCTTA 59.985 37.037 0.00 0.00 32.19 2.10
725 750 6.183361 ACCGATTTCAATCTGTATAGGCTCTT 60.183 38.462 0.00 0.00 32.19 2.85
726 751 5.305644 ACCGATTTCAATCTGTATAGGCTCT 59.694 40.000 0.00 0.00 32.19 4.09
727 752 5.542779 ACCGATTTCAATCTGTATAGGCTC 58.457 41.667 0.00 0.00 32.19 4.70
728 753 5.552870 ACCGATTTCAATCTGTATAGGCT 57.447 39.130 0.00 0.00 32.19 4.58
729 754 6.483640 AGAAACCGATTTCAATCTGTATAGGC 59.516 38.462 4.77 0.00 45.78 3.93
730 755 7.710907 TGAGAAACCGATTTCAATCTGTATAGG 59.289 37.037 4.77 0.00 45.78 2.57
731 756 8.648557 TGAGAAACCGATTTCAATCTGTATAG 57.351 34.615 4.77 0.00 45.78 1.31
732 757 8.258007 ACTGAGAAACCGATTTCAATCTGTATA 58.742 33.333 4.77 0.00 45.78 1.47
733 758 7.106239 ACTGAGAAACCGATTTCAATCTGTAT 58.894 34.615 4.77 0.00 45.78 2.29
734 759 6.464222 ACTGAGAAACCGATTTCAATCTGTA 58.536 36.000 4.77 0.00 45.78 2.74
735 760 5.308825 ACTGAGAAACCGATTTCAATCTGT 58.691 37.500 4.77 1.93 45.78 3.41
736 761 5.869753 ACTGAGAAACCGATTTCAATCTG 57.130 39.130 4.77 1.31 45.78 2.90
737 762 6.486657 TCAAACTGAGAAACCGATTTCAATCT 59.513 34.615 4.77 0.00 45.78 2.40
738 763 6.668323 TCAAACTGAGAAACCGATTTCAATC 58.332 36.000 4.77 0.00 45.78 2.67
739 764 6.633500 TCAAACTGAGAAACCGATTTCAAT 57.367 33.333 4.77 0.00 45.78 2.57
740 765 6.443934 TTCAAACTGAGAAACCGATTTCAA 57.556 33.333 4.77 0.00 45.78 2.69
741 766 6.565811 CGATTCAAACTGAGAAACCGATTTCA 60.566 38.462 4.77 0.00 45.78 2.69
742 767 5.790495 CGATTCAAACTGAGAAACCGATTTC 59.210 40.000 0.00 0.00 44.02 2.17
743 768 5.238650 ACGATTCAAACTGAGAAACCGATTT 59.761 36.000 0.00 0.00 32.93 2.17
744 769 4.755123 ACGATTCAAACTGAGAAACCGATT 59.245 37.500 0.00 0.00 32.93 3.34
745 770 4.315803 ACGATTCAAACTGAGAAACCGAT 58.684 39.130 0.00 0.00 32.93 4.18
746 771 3.724374 ACGATTCAAACTGAGAAACCGA 58.276 40.909 0.00 0.00 32.93 4.69
747 772 5.779806 ATACGATTCAAACTGAGAAACCG 57.220 39.130 0.00 0.00 33.99 4.44
748 773 7.591006 TGTATACGATTCAAACTGAGAAACC 57.409 36.000 0.00 0.00 0.00 3.27
752 777 9.653287 AGAAAATGTATACGATTCAAACTGAGA 57.347 29.630 13.99 0.00 0.00 3.27
755 780 9.825972 ACAAGAAAATGTATACGATTCAAACTG 57.174 29.630 13.99 9.41 0.00 3.16
757 782 9.274065 GGACAAGAAAATGTATACGATTCAAAC 57.726 33.333 13.99 5.92 32.57 2.93
758 783 8.172484 CGGACAAGAAAATGTATACGATTCAAA 58.828 33.333 13.99 0.00 32.57 2.69
759 784 7.546316 TCGGACAAGAAAATGTATACGATTCAA 59.454 33.333 13.99 0.00 32.68 2.69
760 785 7.036829 TCGGACAAGAAAATGTATACGATTCA 58.963 34.615 13.99 0.00 32.68 2.57
761 786 7.459394 TCGGACAAGAAAATGTATACGATTC 57.541 36.000 0.00 3.11 32.68 2.52
762 787 8.335356 CAATCGGACAAGAAAATGTATACGATT 58.665 33.333 15.06 15.06 45.25 3.34
763 788 7.042051 CCAATCGGACAAGAAAATGTATACGAT 60.042 37.037 0.00 0.00 41.87 3.73
764 789 6.256975 CCAATCGGACAAGAAAATGTATACGA 59.743 38.462 0.00 0.00 37.94 3.43
765 790 6.418956 CCAATCGGACAAGAAAATGTATACG 58.581 40.000 0.00 0.00 32.57 3.06
766 791 6.725246 CCCAATCGGACAAGAAAATGTATAC 58.275 40.000 0.00 0.00 32.57 1.47
767 792 5.298276 GCCCAATCGGACAAGAAAATGTATA 59.702 40.000 0.00 0.00 32.57 1.47
768 793 4.097892 GCCCAATCGGACAAGAAAATGTAT 59.902 41.667 0.00 0.00 32.57 2.29
769 794 3.442273 GCCCAATCGGACAAGAAAATGTA 59.558 43.478 0.00 0.00 32.57 2.29
770 795 2.231235 GCCCAATCGGACAAGAAAATGT 59.769 45.455 0.00 0.00 35.90 2.71
771 796 2.230992 TGCCCAATCGGACAAGAAAATG 59.769 45.455 0.00 0.00 0.00 2.32
772 797 2.524306 TGCCCAATCGGACAAGAAAAT 58.476 42.857 0.00 0.00 0.00 1.82
773 798 1.988293 TGCCCAATCGGACAAGAAAA 58.012 45.000 0.00 0.00 0.00 2.29
774 799 1.611491 GTTGCCCAATCGGACAAGAAA 59.389 47.619 0.00 0.00 31.10 2.52
775 800 1.243902 GTTGCCCAATCGGACAAGAA 58.756 50.000 0.00 0.00 31.10 2.52
776 801 0.953471 CGTTGCCCAATCGGACAAGA 60.953 55.000 0.00 0.00 31.10 3.02
889 920 2.680352 GAGGTCGGACCAGCCTGA 60.680 66.667 27.87 0.00 41.95 3.86
900 931 2.442272 AGATCGGTGGGGAGGTCG 60.442 66.667 0.00 0.00 0.00 4.79
942 973 0.249489 CCAGAGCCTCGGGTAAATCG 60.249 60.000 2.32 0.00 0.00 3.34
945 976 2.987125 GCCAGAGCCTCGGGTAAA 59.013 61.111 12.62 0.00 34.05 2.01
960 991 2.331132 GCAGACAGCACAGAAGGCC 61.331 63.158 0.00 0.00 44.79 5.19
1293 1347 0.036010 AGACCCCTTTGATGCACGAG 60.036 55.000 0.00 0.00 0.00 4.18
1303 1357 3.117738 CCTTCATCTGCATAGACCCCTTT 60.118 47.826 0.00 0.00 35.34 3.11
1363 1417 5.450412 CCATGTCATAAACACTGCCATTACC 60.450 44.000 0.00 0.00 41.75 2.85
1539 1596 5.984725 TCGGCAAAACTATCTTGGATTCTA 58.015 37.500 0.00 0.00 0.00 2.10
1544 1601 4.155826 CACAATCGGCAAAACTATCTTGGA 59.844 41.667 0.00 0.00 0.00 3.53
1575 1634 0.382515 AGACGTAGAATCTGCCTCGC 59.617 55.000 0.00 0.00 0.00 5.03
1593 1652 7.874940 TCTTCAATTTACCTGTCATTGACAAG 58.125 34.615 19.44 16.03 42.26 3.16
1844 1903 4.530857 CGTGCCCCCTTAGAGCCG 62.531 72.222 0.00 0.00 0.00 5.52
1890 1950 3.565516 GAATTTTTCCACGGACAAGAGC 58.434 45.455 0.00 0.00 0.00 4.09
1962 2022 3.454042 TGTCGATGCTCAAAAATGTCG 57.546 42.857 0.00 0.00 0.00 4.35
2073 2136 2.068834 ACCAGACTTCCGACGGATAT 57.931 50.000 19.12 8.91 0.00 1.63
2111 2174 3.446161 CCAGTCGACATGGTTCCTAAGTA 59.554 47.826 19.50 0.00 32.85 2.24
2131 2194 0.874390 GCAGCACGAAACATCTTCCA 59.126 50.000 0.00 0.00 0.00 3.53
2159 2222 1.135286 GCCATAGCAAAGCACCAACTC 60.135 52.381 0.00 0.00 39.53 3.01
2160 2223 0.890683 GCCATAGCAAAGCACCAACT 59.109 50.000 0.00 0.00 39.53 3.16
2203 2266 6.375455 ACCCAACACAACTCATCAATCTATTC 59.625 38.462 0.00 0.00 0.00 1.75
2257 2320 5.008415 GCATACAAACTCATGATTGCTAGCT 59.992 40.000 17.23 0.00 32.73 3.32
2261 2324 4.703575 ACAGCATACAAACTCATGATTGCT 59.296 37.500 8.63 6.43 40.23 3.91
2264 2327 5.356190 CAGGACAGCATACAAACTCATGATT 59.644 40.000 0.00 0.00 0.00 2.57
2281 2344 0.250467 CTTGTGGTGGGACAGGACAG 60.250 60.000 0.00 0.00 41.80 3.51
2337 2400 5.967088 TCAGAGGCGATTATATTTAGCTCC 58.033 41.667 0.00 0.00 0.00 4.70
2349 2412 5.491635 GCTCTTAAAATTCAGAGGCGATT 57.508 39.130 6.51 0.00 37.59 3.34
2383 2446 3.233507 TGAATCAGCTTGGCCTTTTCTT 58.766 40.909 3.32 0.00 0.00 2.52
2386 2449 4.420522 TTTTGAATCAGCTTGGCCTTTT 57.579 36.364 3.32 0.00 0.00 2.27
2395 2458 6.248433 TCCACCTCTTTATTTTGAATCAGCT 58.752 36.000 0.00 0.00 0.00 4.24
2425 2488 7.482654 TGAATCAGCTTCTATCGTATTTTGG 57.517 36.000 0.00 0.00 34.75 3.28
2522 2585 4.430908 GAGACCTTGTTACTGGTTATCCG 58.569 47.826 2.73 0.00 36.59 4.18
2587 2654 3.989787 CCGGTTGTGGCTTTGGGC 61.990 66.667 0.00 0.00 40.90 5.36
2660 2727 1.602377 CTCGGGATATTTTCAACCGGC 59.398 52.381 0.00 0.00 44.36 6.13
2850 2917 3.305471 GGGTTGGCGTTTGTGCTTTATTA 60.305 43.478 0.00 0.00 34.52 0.98
2886 2953 0.253044 ACGGGGTGGATTCTGACATG 59.747 55.000 0.00 0.00 0.00 3.21
2904 2971 5.132897 TGTTATTTGGAACATGGCTTGAC 57.867 39.130 7.45 1.23 39.30 3.18
2967 3034 0.247736 AGATTCTGTGGCGGTCAGTC 59.752 55.000 0.00 0.00 34.86 3.51
3003 3070 6.127730 ACGAAAACATCAAACACCTCTTTCTT 60.128 34.615 0.00 0.00 0.00 2.52
3032 3099 5.034797 CGTCTCGATGTAGCTTTTGTGATA 58.965 41.667 0.00 0.00 0.00 2.15
3050 3117 0.322546 AAATTGGGTGGGCTCGTCTC 60.323 55.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.