Multiple sequence alignment - TraesCS7B01G384200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G384200 chr7B 100.000 2987 0 0 1 2987 650125031 650128017 0.000000e+00 5517
1 TraesCS7B01G384200 chr7A 90.098 2959 159 49 1 2900 674270292 674273175 0.000000e+00 3718
2 TraesCS7B01G384200 chr7D 92.094 2416 136 21 1 2394 582299001 582301383 0.000000e+00 3352
3 TraesCS7B01G384200 chr7D 86.296 540 53 15 2462 2987 582301400 582301932 4.320000e-158 568


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G384200 chr7B 650125031 650128017 2986 False 5517 5517 100.000 1 2987 1 chr7B.!!$F1 2986
1 TraesCS7B01G384200 chr7A 674270292 674273175 2883 False 3718 3718 90.098 1 2900 1 chr7A.!!$F1 2899
2 TraesCS7B01G384200 chr7D 582299001 582301932 2931 False 1960 3352 89.195 1 2987 2 chr7D.!!$F1 2986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 363 0.107945 ATCTGCTTTGAGCCGACCTC 60.108 55.0 0.0 0.0 41.51 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2329 2374 0.106967 TGCCCACACAGTAGTTGCAA 60.107 50.0 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.252742 ACTTCCACCGGAATCCTCCT 60.253 55.000 9.46 0.00 41.23 3.69
47 48 1.075151 ACCGGAATCCTCCTCTCCC 60.075 63.158 9.46 0.00 39.93 4.30
88 89 5.825593 TTGATTCAGGAGGTGGTATATCC 57.174 43.478 0.00 0.00 0.00 2.59
189 190 0.460284 CCTGATTCCTCGGTGGTTCG 60.460 60.000 0.00 0.00 37.07 3.95
195 197 0.249573 TCCTCGGTGGTTCGTGTTTC 60.250 55.000 0.00 0.00 37.07 2.78
235 237 1.270305 CGGAGAAGCAGTCTTTGGTCA 60.270 52.381 0.00 0.00 36.41 4.02
255 257 0.901827 TCTGCTCGAGGTAATGGCAA 59.098 50.000 15.58 0.00 32.43 4.52
269 271 5.298276 GGTAATGGCAACGGATAAGATTTGA 59.702 40.000 0.00 0.00 42.51 2.69
300 308 3.345508 GGGGGTGTTAGACTGTAAAGG 57.654 52.381 0.00 0.00 0.00 3.11
353 363 0.107945 ATCTGCTTTGAGCCGACCTC 60.108 55.000 0.00 0.00 41.51 3.85
387 399 8.768501 ATTTTAACTGAGAAATAAGGGGATCC 57.231 34.615 1.92 1.92 0.00 3.36
389 401 5.379706 AACTGAGAAATAAGGGGATCCAG 57.620 43.478 15.23 0.00 34.83 3.86
477 492 1.071605 GAGTGCGAACTGCTAAGTGG 58.928 55.000 0.00 0.00 46.63 4.00
489 504 6.622427 ACTGCTAAGTGGTCTATTTAGGTT 57.378 37.500 1.54 0.00 34.48 3.50
531 546 3.877508 GCTGTTGTCCCCATTACTGTATC 59.122 47.826 0.00 0.00 0.00 2.24
583 600 5.270893 TGGCCTCCTTTTTACTTTGTTTC 57.729 39.130 3.32 0.00 0.00 2.78
618 635 6.380995 TGTGATTTGATTTCTCACCATTTCG 58.619 36.000 0.00 0.00 38.79 3.46
639 656 3.201290 GACTGATTGATTCCATGCGAGT 58.799 45.455 0.00 0.00 0.00 4.18
709 726 8.550710 AAAATTTGTCATGTTACATCCATTGG 57.449 30.769 0.00 0.00 0.00 3.16
807 824 7.928908 TTTCTGCTGTAAAATGCTTAGTTTG 57.071 32.000 0.00 0.00 0.00 2.93
838 855 9.241317 GTTATTTCCTTTCATGCATGTTATCTG 57.759 33.333 25.43 11.05 0.00 2.90
839 856 5.840243 TTCCTTTCATGCATGTTATCTGG 57.160 39.130 25.43 18.18 0.00 3.86
841 858 5.128205 TCCTTTCATGCATGTTATCTGGAG 58.872 41.667 25.43 12.16 0.00 3.86
842 859 4.885907 CCTTTCATGCATGTTATCTGGAGT 59.114 41.667 25.43 0.00 0.00 3.85
843 860 6.057533 CCTTTCATGCATGTTATCTGGAGTA 58.942 40.000 25.43 0.00 0.00 2.59
844 861 6.017605 CCTTTCATGCATGTTATCTGGAGTAC 60.018 42.308 25.43 0.00 0.00 2.73
925 947 2.607635 GTGAATCGTCGGTTATGCATGT 59.392 45.455 10.16 0.00 0.00 3.21
926 948 3.063452 GTGAATCGTCGGTTATGCATGTT 59.937 43.478 10.16 0.00 0.00 2.71
927 949 3.063316 TGAATCGTCGGTTATGCATGTTG 59.937 43.478 10.16 0.00 0.00 3.33
928 950 0.724549 TCGTCGGTTATGCATGTTGC 59.275 50.000 10.16 0.00 45.29 4.17
939 965 0.743097 GCATGTTGCCCTGATTCTCC 59.257 55.000 0.00 0.00 37.42 3.71
954 980 4.771577 TGATTCTCCTTATTTGGCTTTGCA 59.228 37.500 0.00 0.00 0.00 4.08
955 981 5.245751 TGATTCTCCTTATTTGGCTTTGCAA 59.754 36.000 0.00 0.00 0.00 4.08
971 997 7.090173 GGCTTTGCAAACAGAAGAATATAACA 58.910 34.615 8.05 0.00 0.00 2.41
973 999 8.023128 GCTTTGCAAACAGAAGAATATAACAGA 58.977 33.333 8.05 0.00 0.00 3.41
974 1000 9.552114 CTTTGCAAACAGAAGAATATAACAGAG 57.448 33.333 8.05 0.00 0.00 3.35
975 1001 7.615582 TGCAAACAGAAGAATATAACAGAGG 57.384 36.000 0.00 0.00 0.00 3.69
976 1002 6.094048 TGCAAACAGAAGAATATAACAGAGGC 59.906 38.462 0.00 0.00 0.00 4.70
977 1003 6.317391 GCAAACAGAAGAATATAACAGAGGCT 59.683 38.462 0.00 0.00 0.00 4.58
978 1004 7.466590 GCAAACAGAAGAATATAACAGAGGCTC 60.467 40.741 6.34 6.34 0.00 4.70
979 1005 7.430760 AACAGAAGAATATAACAGAGGCTCT 57.569 36.000 12.24 12.24 0.00 4.09
980 1006 8.540507 AACAGAAGAATATAACAGAGGCTCTA 57.459 34.615 18.26 1.62 0.00 2.43
1125 1151 2.409870 CGGAAAGCCATGCCCTGAC 61.410 63.158 0.00 0.00 0.00 3.51
1173 1199 1.596260 CTTGCATACACTGAGATGGCG 59.404 52.381 0.00 0.00 0.00 5.69
1329 1360 8.868522 TTTCATTTTCCTAGTGATCTGATTGT 57.131 30.769 0.00 0.00 0.00 2.71
1334 1365 7.672983 TTTCCTAGTGATCTGATTGTTCAAC 57.327 36.000 0.00 0.00 0.00 3.18
1378 1409 7.468922 TGATTACGATGATGAGACATTTGAC 57.531 36.000 0.00 0.00 0.00 3.18
1429 1460 1.360551 CTCCTCCGCACCATACTCG 59.639 63.158 0.00 0.00 0.00 4.18
1565 1596 5.221126 GGGCTGAATCAGGTTTGATAACATC 60.221 44.000 12.66 0.00 43.20 3.06
1581 1612 1.409064 ACATCACACACGACAGTCACT 59.591 47.619 0.41 0.00 0.00 3.41
1582 1613 1.788886 CATCACACACGACAGTCACTG 59.211 52.381 2.22 2.22 37.52 3.66
1588 1619 0.861837 CACGACAGTCACTGCCTTTC 59.138 55.000 4.13 0.00 34.37 2.62
1591 1622 1.810031 CGACAGTCACTGCCTTTCCAA 60.810 52.381 4.13 0.00 34.37 3.53
1594 1625 0.535102 AGTCACTGCCTTTCCAACCG 60.535 55.000 0.00 0.00 0.00 4.44
1692 1723 3.989698 CTCAGGCATCGTCGGCGTT 62.990 63.158 10.18 0.00 39.49 4.84
1770 1801 1.522580 GGAAGAGGCGCTCCACATC 60.523 63.158 7.64 0.00 33.74 3.06
1997 2040 1.977293 AAGCTCTGAATCTCGCCCCC 61.977 60.000 0.00 0.00 0.00 5.40
2132 2176 2.954684 TAGGCTTCCGGTGCTGTGG 61.955 63.158 18.34 0.00 0.00 4.17
2170 2215 2.809174 TGATTCAGCCGTGCGACG 60.809 61.111 0.00 0.00 42.11 5.12
2225 2270 8.034215 TCATGTTTCGCATAATGGAGAAATTTT 58.966 29.630 0.00 0.00 38.51 1.82
2239 2284 7.315142 TGGAGAAATTTTACATGATTCTGCAC 58.685 34.615 0.00 0.00 41.49 4.57
2297 2342 6.381133 GGGTATTTTGAAACTCCCAAGATGAT 59.619 38.462 10.81 0.00 35.53 2.45
2302 2347 4.081406 TGAAACTCCCAAGATGATTGTGG 58.919 43.478 0.00 0.00 0.00 4.17
2303 2348 2.134789 ACTCCCAAGATGATTGTGGC 57.865 50.000 0.00 0.00 0.00 5.01
2319 2364 4.631773 GCATCTCAGCAGAAGCCA 57.368 55.556 0.00 0.00 43.56 4.75
2320 2365 3.097461 GCATCTCAGCAGAAGCCAT 57.903 52.632 0.00 0.00 43.56 4.40
2321 2366 2.251409 GCATCTCAGCAGAAGCCATA 57.749 50.000 0.00 0.00 43.56 2.74
2322 2367 2.780714 GCATCTCAGCAGAAGCCATAT 58.219 47.619 0.00 0.00 43.56 1.78
2323 2368 3.935315 GCATCTCAGCAGAAGCCATATA 58.065 45.455 0.00 0.00 43.56 0.86
2324 2369 4.321718 GCATCTCAGCAGAAGCCATATAA 58.678 43.478 0.00 0.00 43.56 0.98
2325 2370 4.942483 GCATCTCAGCAGAAGCCATATAAT 59.058 41.667 0.00 0.00 43.56 1.28
2326 2371 5.064962 GCATCTCAGCAGAAGCCATATAATC 59.935 44.000 0.00 0.00 43.56 1.75
2327 2372 6.408035 CATCTCAGCAGAAGCCATATAATCT 58.592 40.000 0.00 0.00 43.56 2.40
2328 2373 6.430962 TCTCAGCAGAAGCCATATAATCTT 57.569 37.500 0.00 0.00 43.56 2.40
2329 2374 6.835174 TCTCAGCAGAAGCCATATAATCTTT 58.165 36.000 0.00 0.00 43.56 2.52
2330 2375 7.285566 TCTCAGCAGAAGCCATATAATCTTTT 58.714 34.615 0.00 0.00 43.56 2.27
2331 2376 7.228108 TCTCAGCAGAAGCCATATAATCTTTTG 59.772 37.037 0.00 0.00 43.56 2.44
2332 2377 5.919141 CAGCAGAAGCCATATAATCTTTTGC 59.081 40.000 14.26 14.26 43.78 3.68
2333 2378 5.595542 AGCAGAAGCCATATAATCTTTTGCA 59.404 36.000 19.67 0.00 45.00 4.08
2334 2379 6.097270 AGCAGAAGCCATATAATCTTTTGCAA 59.903 34.615 19.67 0.00 45.00 4.08
2349 2394 0.534877 TGCAACTACTGTGTGGGCAG 60.535 55.000 0.00 0.00 41.92 4.85
2357 2402 2.281761 GTGTGGGCAGAGTGGGTG 60.282 66.667 0.00 0.00 0.00 4.61
2411 2456 1.640593 TTTGGGTCCCACTGTCAGCA 61.641 55.000 11.24 0.00 30.78 4.41
2420 2465 2.113774 CTGTCAGCAACCAGGGCA 59.886 61.111 0.00 0.00 0.00 5.36
2454 2499 6.312918 TGATAGTTTCGTGAGTAAAGATTGGC 59.687 38.462 0.00 0.00 0.00 4.52
2455 2500 4.642429 AGTTTCGTGAGTAAAGATTGGCT 58.358 39.130 0.00 0.00 0.00 4.75
2456 2501 5.790593 AGTTTCGTGAGTAAAGATTGGCTA 58.209 37.500 0.00 0.00 0.00 3.93
2457 2502 6.228258 AGTTTCGTGAGTAAAGATTGGCTAA 58.772 36.000 0.00 0.00 0.00 3.09
2458 2503 6.708949 AGTTTCGTGAGTAAAGATTGGCTAAA 59.291 34.615 0.00 0.00 0.00 1.85
2459 2504 6.721571 TTCGTGAGTAAAGATTGGCTAAAG 57.278 37.500 0.00 0.00 0.00 1.85
2460 2505 4.630069 TCGTGAGTAAAGATTGGCTAAAGC 59.370 41.667 0.00 0.00 41.14 3.51
2508 2553 0.460109 TGTCAATCACCTCGCCATCG 60.460 55.000 0.00 0.00 0.00 3.84
2689 2734 2.618053 AGTATTCTCCGCCTTTCGTTG 58.382 47.619 0.00 0.00 36.19 4.10
2724 2769 3.691118 TCTATTGTGGCAAGATTGACTGC 59.309 43.478 0.00 0.00 37.03 4.40
2736 2781 4.847198 AGATTGACTGCATGGATGTGTAA 58.153 39.130 0.00 0.00 0.00 2.41
2751 2796 5.577945 GGATGTGTAATGTGCATTCCTTTTG 59.422 40.000 0.18 0.00 32.50 2.44
2810 2873 6.353323 TGAAATGAAAACCAGACAGACTACA 58.647 36.000 0.00 0.00 0.00 2.74
2817 2880 6.377327 AAACCAGACAGACTACAACAAATG 57.623 37.500 0.00 0.00 0.00 2.32
2825 2888 6.119536 ACAGACTACAACAAATGTCAAAGGA 58.880 36.000 0.00 0.00 42.70 3.36
2890 2953 2.488153 GGCGCACATTTCCTTCTAGTTT 59.512 45.455 10.83 0.00 0.00 2.66
2893 2956 5.163652 GGCGCACATTTCCTTCTAGTTTTAT 60.164 40.000 10.83 0.00 0.00 1.40
2911 2974 8.671384 AGTTTTATACAACTAAAGCACACAGA 57.329 30.769 2.37 0.00 35.10 3.41
2912 2975 9.284968 AGTTTTATACAACTAAAGCACACAGAT 57.715 29.630 2.37 0.00 35.10 2.90
2949 3012 8.377799 AGCATGGTCTAAGAAAATTTGGAAAAT 58.622 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 8.028938 CGACAGGAACCAAGAAATAAATGAAAT 58.971 33.333 0.00 0.00 0.00 2.17
189 190 2.669364 CAAGAATGCCTGCAGAAACAC 58.331 47.619 17.39 3.68 0.00 3.32
210 212 4.821589 GACTGCTTCTCCGGCCGG 62.822 72.222 39.13 39.13 0.00 6.13
211 213 2.788191 AAAGACTGCTTCTCCGGCCG 62.788 60.000 21.04 21.04 31.02 6.13
235 237 1.123077 TGCCATTACCTCGAGCAGAT 58.877 50.000 6.99 0.00 0.00 2.90
255 257 5.277974 CGCATCCAAATCAAATCTTATCCGT 60.278 40.000 0.00 0.00 0.00 4.69
294 302 3.311596 CCGTGCCTTTATACTGCCTTTAC 59.688 47.826 0.00 0.00 0.00 2.01
300 308 1.641677 CGCCGTGCCTTTATACTGC 59.358 57.895 0.00 0.00 0.00 4.40
387 399 5.238650 TGCAGAGCATGATAACATTGATCTG 59.761 40.000 17.83 17.83 42.88 2.90
389 401 5.684550 TGCAGAGCATGATAACATTGATC 57.315 39.130 0.00 0.00 34.15 2.92
445 460 5.920273 CAGTTCGCACTCCATTAAAATTTGT 59.080 36.000 0.00 0.00 0.00 2.83
531 546 7.087409 TGCTAAACAATCACATTATCACTGG 57.913 36.000 0.00 0.00 0.00 4.00
583 600 7.605449 AGAAATCAAATCACATTGTAACAGGG 58.395 34.615 0.00 0.00 0.00 4.45
618 635 3.201290 ACTCGCATGGAATCAATCAGTC 58.799 45.455 0.00 0.00 0.00 3.51
639 656 6.314648 CAGATTCACAGTGCTAAGCTAAATGA 59.685 38.462 0.00 0.00 0.00 2.57
709 726 1.792367 GTTTTTCCTCATTGCAACGGC 59.208 47.619 0.00 0.00 41.68 5.68
807 824 7.092716 ACATGCATGAAAGGAAATAACAGTTC 58.907 34.615 32.75 0.00 0.00 3.01
892 914 3.987220 CGACGATTCACACATATGGCATA 59.013 43.478 10.07 10.07 0.00 3.14
925 947 4.280819 CCAAATAAGGAGAATCAGGGCAA 58.719 43.478 0.00 0.00 36.25 4.52
926 948 3.902218 CCAAATAAGGAGAATCAGGGCA 58.098 45.455 0.00 0.00 36.25 5.36
927 949 2.625314 GCCAAATAAGGAGAATCAGGGC 59.375 50.000 0.00 0.00 36.25 5.19
928 950 4.176120 AGCCAAATAAGGAGAATCAGGG 57.824 45.455 0.00 0.00 36.25 4.45
939 965 5.984926 TCTTCTGTTTGCAAAGCCAAATAAG 59.015 36.000 13.26 11.13 37.09 1.73
954 980 7.856415 AGAGCCTCTGTTATATTCTTCTGTTT 58.144 34.615 0.00 0.00 0.00 2.83
955 981 7.430760 AGAGCCTCTGTTATATTCTTCTGTT 57.569 36.000 0.00 0.00 0.00 3.16
971 997 4.802307 TGATGATCTGAACTAGAGCCTCT 58.198 43.478 0.00 0.00 41.13 3.69
973 999 5.146298 TGATGATGATCTGAACTAGAGCCT 58.854 41.667 0.00 0.00 41.13 4.58
974 1000 5.243507 TCTGATGATGATCTGAACTAGAGCC 59.756 44.000 0.00 0.00 41.13 4.70
975 1001 6.151691 GTCTGATGATGATCTGAACTAGAGC 58.848 44.000 3.41 0.00 42.18 4.09
976 1002 7.274603 TGTCTGATGATGATCTGAACTAGAG 57.725 40.000 3.41 0.00 39.20 2.43
977 1003 7.287235 ACATGTCTGATGATGATCTGAACTAGA 59.713 37.037 3.41 0.00 38.04 2.43
978 1004 7.435305 ACATGTCTGATGATGATCTGAACTAG 58.565 38.462 3.41 0.00 38.04 2.57
979 1005 7.357429 ACATGTCTGATGATGATCTGAACTA 57.643 36.000 3.41 0.00 38.04 2.24
980 1006 6.236558 ACATGTCTGATGATGATCTGAACT 57.763 37.500 3.41 0.00 38.04 3.01
1125 1151 2.156504 GCCTTCGTGCATTCGATCATAG 59.843 50.000 0.00 0.00 39.57 2.23
1173 1199 4.651045 AATCCAAAGCATGGGTATTTCCTC 59.349 41.667 8.52 0.00 43.84 3.71
1329 1360 3.609853 CCAGCCTGCAGTATAAGTTGAA 58.390 45.455 13.81 0.00 0.00 2.69
1334 1365 3.007290 TCATAGCCAGCCTGCAGTATAAG 59.993 47.826 13.81 0.00 0.00 1.73
1378 1409 6.248420 CGGAATAAATACGCTTGAACACTTTG 59.752 38.462 0.00 0.00 0.00 2.77
1420 1451 2.253610 TCAGGAAACACCGAGTATGGT 58.746 47.619 0.00 0.00 45.21 3.55
1429 1460 0.242017 GCTGTGCATCAGGAAACACC 59.758 55.000 15.16 0.00 43.78 4.16
1565 1596 1.490693 GGCAGTGACTGTCGTGTGTG 61.491 60.000 14.82 0.00 33.43 3.82
1581 1612 0.741915 GACAAACGGTTGGAAAGGCA 59.258 50.000 19.08 0.00 39.22 4.75
1582 1613 0.317519 CGACAAACGGTTGGAAAGGC 60.318 55.000 19.08 0.00 39.22 4.35
1588 1619 7.318249 GCTTTTATAAGACGACAAACGGTTGG 61.318 42.308 19.08 2.71 37.82 3.77
1591 1622 4.751098 TGCTTTTATAAGACGACAAACGGT 59.249 37.500 0.00 0.00 37.82 4.83
1594 1625 6.790825 GTGACTGCTTTTATAAGACGACAAAC 59.209 38.462 0.00 0.00 32.92 2.93
1692 1723 4.803452 AGATTTTTGGGTCAGGTTTCTCA 58.197 39.130 0.00 0.00 0.00 3.27
2132 2176 0.953727 TTGCCACATTCAGCAGTCAC 59.046 50.000 0.00 0.00 40.73 3.67
2170 2215 7.912250 AGAATTATTCGTCATTGCAAGATGTTC 59.088 33.333 4.94 7.50 34.02 3.18
2225 2270 0.108377 ACGCGGTGCAGAATCATGTA 60.108 50.000 12.47 0.00 0.00 2.29
2239 2284 0.249322 CCTACCAACCTCATACGCGG 60.249 60.000 12.47 0.00 0.00 6.46
2254 2299 1.308998 CCCCAACATCGCAATCCTAC 58.691 55.000 0.00 0.00 0.00 3.18
2297 2342 1.817357 CTTCTGCTGAGATGCCACAA 58.183 50.000 0.00 0.00 0.00 3.33
2302 2347 2.251409 TATGGCTTCTGCTGAGATGC 57.749 50.000 3.97 3.97 44.83 3.91
2303 2348 6.408035 AGATTATATGGCTTCTGCTGAGATG 58.592 40.000 0.00 0.00 39.59 2.90
2318 2363 9.494479 CACACAGTAGTTGCAAAAGATTATATG 57.506 33.333 0.00 0.00 0.00 1.78
2319 2364 8.677300 CCACACAGTAGTTGCAAAAGATTATAT 58.323 33.333 0.00 0.00 0.00 0.86
2320 2365 7.120579 CCCACACAGTAGTTGCAAAAGATTATA 59.879 37.037 0.00 0.00 0.00 0.98
2321 2366 6.071952 CCCACACAGTAGTTGCAAAAGATTAT 60.072 38.462 0.00 0.00 0.00 1.28
2322 2367 5.240623 CCCACACAGTAGTTGCAAAAGATTA 59.759 40.000 0.00 0.00 0.00 1.75
2323 2368 4.037923 CCCACACAGTAGTTGCAAAAGATT 59.962 41.667 0.00 0.00 0.00 2.40
2324 2369 3.569701 CCCACACAGTAGTTGCAAAAGAT 59.430 43.478 0.00 0.00 0.00 2.40
2325 2370 2.948979 CCCACACAGTAGTTGCAAAAGA 59.051 45.455 0.00 0.00 0.00 2.52
2326 2371 2.543653 GCCCACACAGTAGTTGCAAAAG 60.544 50.000 0.00 0.00 0.00 2.27
2327 2372 1.407258 GCCCACACAGTAGTTGCAAAA 59.593 47.619 0.00 0.00 0.00 2.44
2328 2373 1.028905 GCCCACACAGTAGTTGCAAA 58.971 50.000 0.00 0.00 0.00 3.68
2329 2374 0.106967 TGCCCACACAGTAGTTGCAA 60.107 50.000 0.00 0.00 0.00 4.08
2330 2375 0.534877 CTGCCCACACAGTAGTTGCA 60.535 55.000 0.00 0.00 32.78 4.08
2331 2376 0.250295 TCTGCCCACACAGTAGTTGC 60.250 55.000 0.00 0.00 38.84 4.17
2332 2377 1.070758 ACTCTGCCCACACAGTAGTTG 59.929 52.381 0.00 0.00 38.84 3.16
2333 2378 1.070758 CACTCTGCCCACACAGTAGTT 59.929 52.381 0.00 0.00 38.84 2.24
2334 2379 0.681733 CACTCTGCCCACACAGTAGT 59.318 55.000 0.00 0.00 38.84 2.73
2357 2402 1.871126 GAGCAACCAGAGGGCTTTGC 61.871 60.000 0.00 0.00 43.16 3.68
2411 2456 4.047125 CCGGATGGTGCCCTGGTT 62.047 66.667 0.00 0.00 0.00 3.67
2429 2474 6.312918 GCCAATCTTTACTCACGAAACTATCA 59.687 38.462 0.00 0.00 0.00 2.15
2438 2483 4.898370 GCTTTAGCCAATCTTTACTCACG 58.102 43.478 0.00 0.00 34.31 4.35
2460 2505 3.496870 AAGACACTGAAGGTGCCTTTAGG 60.497 47.826 21.62 14.67 44.21 2.69
2508 2553 1.302511 TCAAGGCGCCTTTCCAGTC 60.303 57.895 38.60 2.04 33.42 3.51
2620 2665 9.354673 CATACCAAATACTCAACATATTTCCCT 57.645 33.333 0.00 0.00 31.33 4.20
2662 2707 2.119495 AGGCGGAGAATACTTGGACAT 58.881 47.619 0.00 0.00 0.00 3.06
2689 2734 6.101332 TGCCACAATAGATTTTCTGAAATGC 58.899 36.000 3.31 0.00 35.65 3.56
2724 2769 4.340097 AGGAATGCACATTACACATCCATG 59.660 41.667 8.27 0.00 34.05 3.66
2736 2781 6.297582 TGGAAATTTCAAAAGGAATGCACAT 58.702 32.000 19.49 0.00 34.91 3.21
2800 2863 6.260050 TCCTTTGACATTTGTTGTAGTCTGTC 59.740 38.462 0.00 0.00 39.18 3.51
2801 2864 6.119536 TCCTTTGACATTTGTTGTAGTCTGT 58.880 36.000 0.00 0.00 39.18 3.41
2802 2865 6.618287 TCCTTTGACATTTGTTGTAGTCTG 57.382 37.500 0.00 0.00 39.18 3.51
2803 2866 7.639113 TTTCCTTTGACATTTGTTGTAGTCT 57.361 32.000 0.00 0.00 39.18 3.24
2804 2867 8.696410 TTTTTCCTTTGACATTTGTTGTAGTC 57.304 30.769 0.00 0.00 39.18 2.59
2890 2953 6.093495 GGCATCTGTGTGCTTTAGTTGTATAA 59.907 38.462 7.48 0.00 44.45 0.98
2893 2956 3.751175 GGCATCTGTGTGCTTTAGTTGTA 59.249 43.478 7.48 0.00 44.45 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.