Multiple sequence alignment - TraesCS7B01G383900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G383900 chr7B 100.000 5755 0 0 1 5755 649844007 649849761 0.000000e+00 10628
1 TraesCS7B01G383900 chr7B 100.000 555 0 0 6060 6614 649850066 649850620 0.000000e+00 1026
2 TraesCS7B01G383900 chr7B 96.774 93 3 0 5663 5755 556002465 556002557 8.880000e-34 156
3 TraesCS7B01G383900 chr7D 88.601 2702 212 46 1740 4411 582116232 582118867 0.000000e+00 3195
4 TraesCS7B01G383900 chr7D 80.706 1700 175 74 1 1659 582114705 582116292 0.000000e+00 1181
5 TraesCS7B01G383900 chr7D 90.378 582 26 18 4416 4970 582119175 582119753 0.000000e+00 737
6 TraesCS7B01G383900 chr7D 91.618 513 24 14 5048 5548 582119870 582120375 0.000000e+00 691
7 TraesCS7B01G383900 chr7D 84.272 426 36 12 6196 6613 582125001 582125403 2.890000e-103 387
8 TraesCS7B01G383900 chr7D 86.486 259 13 11 4159 4410 582118896 582119139 1.410000e-66 265
9 TraesCS7B01G383900 chr7D 88.679 106 10 2 6060 6165 582124747 582124850 1.940000e-25 128
10 TraesCS7B01G383900 chr7A 82.190 2813 269 98 269 3007 674015062 674017716 0.000000e+00 2206
11 TraesCS7B01G383900 chr7A 94.296 561 23 8 4415 4970 674019129 674019685 0.000000e+00 850
12 TraesCS7B01G383900 chr7A 90.523 612 45 5 3470 4070 674018202 674018811 0.000000e+00 797
13 TraesCS7B01G383900 chr7A 88.992 645 30 19 5038 5662 674019793 674020416 0.000000e+00 760
14 TraesCS7B01G383900 chr7A 91.667 420 24 8 6199 6613 674020677 674021090 7.440000e-159 571
15 TraesCS7B01G383900 chr7A 89.972 359 29 7 3044 3398 674017718 674018073 2.170000e-124 457
16 TraesCS7B01G383900 chr7A 91.204 216 15 1 1 216 674009022 674009233 2.330000e-74 291
17 TraesCS7B01G383900 chr7A 90.566 106 9 1 6060 6165 674020450 674020554 8.940000e-29 139
18 TraesCS7B01G383900 chr6A 88.644 907 65 12 2855 3758 422286609 422285738 0.000000e+00 1070
19 TraesCS7B01G383900 chr5B 98.901 91 1 0 5665 5755 609609676 609609586 5.310000e-36 163
20 TraesCS7B01G383900 chr5B 96.774 93 3 0 5663 5755 492053305 492053213 8.880000e-34 156
21 TraesCS7B01G383900 chr4A 98.901 91 1 0 5665 5755 714185676 714185586 5.310000e-36 163
22 TraesCS7B01G383900 chr4A 97.826 92 2 0 5664 5755 546005347 546005256 6.860000e-35 159
23 TraesCS7B01G383900 chr4A 97.802 91 2 0 5665 5755 733558266 733558356 2.470000e-34 158
24 TraesCS7B01G383900 chr1D 98.901 91 1 0 5665 5755 492428959 492429049 5.310000e-36 163
25 TraesCS7B01G383900 chr1B 98.889 90 1 0 5666 5755 411258617 411258528 1.910000e-35 161
26 TraesCS7B01G383900 chr6B 97.802 91 2 0 5665 5755 52978142 52978052 2.470000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G383900 chr7B 649844007 649850620 6613 False 5827.000000 10628 100.000000 1 6614 2 chr7B.!!$F2 6613
1 TraesCS7B01G383900 chr7D 582114705 582120375 5670 False 1213.800000 3195 87.557800 1 5548 5 chr7D.!!$F1 5547
2 TraesCS7B01G383900 chr7D 582124747 582125403 656 False 257.500000 387 86.475500 6060 6613 2 chr7D.!!$F2 553
3 TraesCS7B01G383900 chr7A 674015062 674021090 6028 False 825.714286 2206 89.743714 269 6613 7 chr7A.!!$F2 6344
4 TraesCS7B01G383900 chr6A 422285738 422286609 871 True 1070.000000 1070 88.644000 2855 3758 1 chr6A.!!$R1 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.033228 CGCTGATCCCAAGCCTCTAG 59.967 60.0 0.00 0.00 0.00 2.43 F
644 680 0.106894 GAGGATCACCCGGTTGGATC 59.893 60.0 15.25 15.25 40.87 3.36 F
1626 1737 0.165295 CACGCAACAGTGATCAGCTG 59.835 55.0 7.63 7.63 44.43 4.24 F
2340 2455 0.037697 ATGCTGGACTTGCGACGTAA 60.038 50.0 0.00 0.00 0.00 3.18 F
3717 3951 0.034896 TTGAACTCCTTCGAGGCCAC 59.965 55.0 5.01 0.00 40.77 5.01 F
4276 4821 0.029035 CTAGTTCGCTGCGACGGTAT 59.971 55.0 25.94 11.11 34.89 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1079 1166 0.106419 AGGAGGAGGATGAGGACGAC 60.106 60.0 0.00 0.00 0.00 4.34 R
2122 2237 0.037882 CAGCAAGAGTCTCGCTCCAA 60.038 55.0 1.55 0.00 45.21 3.53 R
3124 3279 0.607489 ACAATGGCAGCAGACCTCAC 60.607 55.0 0.00 0.00 0.00 3.51 R
4188 4729 0.034059 AACAAGAGGACTGCTGACCG 59.966 55.0 6.46 0.00 33.32 4.79 R
4830 5442 0.105964 TGAAGTTCACCTGGTGACCG 59.894 55.0 28.35 1.92 42.60 4.79 R
6169 6862 0.104304 ACATATCGCAGGACCGGTTC 59.896 55.0 9.42 6.68 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.166814 GTGATCGGCTTGAGTTGTGC 59.833 55.000 0.00 0.00 0.00 4.57
94 95 0.813210 CTTCGCTGATCCCAAGCCTC 60.813 60.000 0.00 0.00 0.00 4.70
95 96 1.267574 TTCGCTGATCCCAAGCCTCT 61.268 55.000 0.00 0.00 0.00 3.69
96 97 0.397114 TCGCTGATCCCAAGCCTCTA 60.397 55.000 0.00 0.00 0.00 2.43
97 98 0.033228 CGCTGATCCCAAGCCTCTAG 59.967 60.000 0.00 0.00 0.00 2.43
131 132 4.081917 TCCAGAAACCAACAGAAAAACACC 60.082 41.667 0.00 0.00 0.00 4.16
152 153 2.223144 CGCTCACTTTTCATTTCACGGA 59.777 45.455 0.00 0.00 0.00 4.69
154 155 3.799035 CTCACTTTTCATTTCACGGACG 58.201 45.455 0.00 0.00 0.00 4.79
173 174 0.390998 GTGGAAGCAGAGGTGAGCTC 60.391 60.000 6.82 6.82 40.90 4.09
174 175 1.153667 GGAAGCAGAGGTGAGCTCG 60.154 63.158 9.64 2.82 40.90 5.03
202 203 2.792599 GATCGAGCGAGTGACCGT 59.207 61.111 0.00 0.00 0.00 4.83
203 204 1.583967 GATCGAGCGAGTGACCGTG 60.584 63.158 0.00 0.00 0.00 4.94
358 372 4.019051 TGGATTCCAGATTCTTTCAGCTCA 60.019 41.667 0.00 0.00 0.00 4.26
507 527 1.439679 GTCGCTTTCCCGATTTGTCT 58.560 50.000 0.00 0.00 39.67 3.41
561 595 1.453379 CCTGCCCTGAATCTGCCTG 60.453 63.158 0.00 0.00 0.00 4.85
569 603 1.742880 GAATCTGCCTGTGCGAGCA 60.743 57.895 0.00 0.00 41.78 4.26
595 629 2.579787 CCCGATCTGACGACGCAC 60.580 66.667 0.00 0.00 35.09 5.34
623 659 4.815108 GTGGGGGCGGTGAATCCC 62.815 72.222 0.00 0.00 41.87 3.85
643 679 1.345715 GGAGGATCACCCGGTTGGAT 61.346 60.000 0.00 0.00 40.87 3.41
644 680 0.106894 GAGGATCACCCGGTTGGATC 59.893 60.000 15.25 15.25 40.87 3.36
645 681 4.878878 GATCACCCGGTTGGATCC 57.121 61.111 4.20 4.20 37.49 3.36
646 682 1.148498 GATCACCCGGTTGGATCCC 59.852 63.158 9.90 0.00 37.49 3.85
647 683 2.660258 GATCACCCGGTTGGATCCCG 62.660 65.000 9.90 5.54 45.07 5.14
649 685 3.712907 ACCCGGTTGGATCCCGTG 61.713 66.667 9.90 0.00 43.98 4.94
691 745 2.391724 GACGGAAGGTGGTTGCCTGA 62.392 60.000 0.00 0.00 39.17 3.86
728 782 2.356125 GCTGTTTCATTCCAGCCTCCTA 60.356 50.000 0.24 0.00 46.55 2.94
732 786 1.227674 CATTCCAGCCTCCTACGCC 60.228 63.158 0.00 0.00 0.00 5.68
768 825 1.680338 ACCAACAAAAAGAGAGCGCT 58.320 45.000 11.27 11.27 0.00 5.92
795 865 1.026718 CATTCCGTGGAAGCTGACCC 61.027 60.000 7.50 1.01 37.56 4.46
796 866 1.201429 ATTCCGTGGAAGCTGACCCT 61.201 55.000 7.50 0.00 37.56 4.34
797 867 0.543410 TTCCGTGGAAGCTGACCCTA 60.543 55.000 0.00 0.00 0.00 3.53
809 879 0.620030 TGACCCTATGCATGCAGTGT 59.380 50.000 26.69 18.55 0.00 3.55
810 880 1.836802 TGACCCTATGCATGCAGTGTA 59.163 47.619 26.69 12.69 0.00 2.90
825 895 4.436998 GTAGTGCAGCGCGGAGGT 62.437 66.667 13.03 0.00 0.00 3.85
835 905 4.626081 GCGGAGGTGTGGCTGTGT 62.626 66.667 0.00 0.00 0.00 3.72
836 906 2.357517 CGGAGGTGTGGCTGTGTC 60.358 66.667 0.00 0.00 0.00 3.67
837 907 2.032681 GGAGGTGTGGCTGTGTCC 59.967 66.667 0.00 0.00 0.00 4.02
839 909 3.883744 GAGGTGTGGCTGTGTCCCG 62.884 68.421 0.00 0.00 0.00 5.14
841 911 2.203153 GTGTGGCTGTGTCCCGTT 60.203 61.111 0.00 0.00 0.00 4.44
842 912 2.110213 TGTGGCTGTGTCCCGTTC 59.890 61.111 0.00 0.00 0.00 3.95
843 913 2.668550 GTGGCTGTGTCCCGTTCC 60.669 66.667 0.00 0.00 0.00 3.62
846 916 4.309950 GCTGTGTCCCGTTCCGGT 62.310 66.667 0.00 0.00 46.80 5.28
847 917 2.357034 CTGTGTCCCGTTCCGGTG 60.357 66.667 0.00 0.00 46.80 4.94
848 918 3.876589 CTGTGTCCCGTTCCGGTGG 62.877 68.421 0.00 1.77 46.80 4.61
856 937 2.045340 GTTCCGGTGGGTGGATGG 60.045 66.667 0.00 0.00 34.91 3.51
903 984 1.223487 GGCTACAAAGGCGGGATCA 59.777 57.895 0.00 0.00 38.69 2.92
935 1017 4.275508 CACCCCCTGTGCTGTGCT 62.276 66.667 0.00 0.00 38.34 4.40
936 1018 4.275508 ACCCCCTGTGCTGTGCTG 62.276 66.667 0.00 0.00 0.00 4.41
937 1019 4.275508 CCCCCTGTGCTGTGCTGT 62.276 66.667 0.00 0.00 0.00 4.40
938 1020 2.981909 CCCCTGTGCTGTGCTGTG 60.982 66.667 0.00 0.00 0.00 3.66
959 1041 0.765135 TGTGGGAGGAAAGGGACGAA 60.765 55.000 0.00 0.00 0.00 3.85
982 1065 4.531426 AAGCCACCCCAACCGCAA 62.531 61.111 0.00 0.00 0.00 4.85
989 1072 2.600173 CCCAACCGCAACCCACAT 60.600 61.111 0.00 0.00 0.00 3.21
1046 1133 1.058428 CATCATGGCTCCCTCCTCCA 61.058 60.000 0.00 0.00 0.00 3.86
1058 1145 2.122729 CCTCCACCTCCACCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
1059 1146 2.294078 CCTCCACCTCCACCTCCAC 61.294 68.421 0.00 0.00 0.00 4.02
1060 1147 2.203938 TCCACCTCCACCTCCACC 60.204 66.667 0.00 0.00 0.00 4.61
1061 1148 2.203998 CCACCTCCACCTCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
1062 1149 2.294078 CCACCTCCACCTCCACCTC 61.294 68.421 0.00 0.00 0.00 3.85
1063 1150 2.283966 ACCTCCACCTCCACCTCG 60.284 66.667 0.00 0.00 0.00 4.63
1064 1151 3.775654 CCTCCACCTCCACCTCGC 61.776 72.222 0.00 0.00 0.00 5.03
1065 1152 3.775654 CTCCACCTCCACCTCGCC 61.776 72.222 0.00 0.00 0.00 5.54
1104 1191 1.152652 TCATCCTCCTCCTCTCCGC 60.153 63.158 0.00 0.00 0.00 5.54
1156 1243 0.956410 CCGGTGCGTGACCCATTTAA 60.956 55.000 0.00 0.00 42.62 1.52
1158 1245 1.240256 GGTGCGTGACCCATTTAACA 58.760 50.000 0.00 0.00 39.10 2.41
1160 1247 2.415357 GGTGCGTGACCCATTTAACATG 60.415 50.000 0.00 0.00 39.10 3.21
1161 1248 1.201181 TGCGTGACCCATTTAACATGC 59.799 47.619 0.00 0.00 43.01 4.06
1163 1250 1.793714 CGTGACCCATTTAACATGCGC 60.794 52.381 0.00 0.00 0.00 6.09
1164 1251 0.449786 TGACCCATTTAACATGCGCG 59.550 50.000 0.00 0.00 0.00 6.86
1165 1252 0.865639 GACCCATTTAACATGCGCGC 60.866 55.000 27.26 27.26 0.00 6.86
1166 1253 1.138459 CCCATTTAACATGCGCGCA 59.862 52.632 38.27 38.27 0.00 6.09
1168 1255 0.866906 CCATTTAACATGCGCGCAGG 60.867 55.000 40.19 40.19 0.00 4.85
1169 1256 1.226660 ATTTAACATGCGCGCAGGC 60.227 52.632 41.46 10.33 0.00 4.85
1170 1257 2.612219 ATTTAACATGCGCGCAGGCC 62.612 55.000 41.46 9.94 35.02 5.19
1190 1277 1.218316 GACGCTTGTCCTCGGGATT 59.782 57.895 0.00 0.00 36.58 3.01
1193 1280 1.276989 ACGCTTGTCCTCGGGATTAAA 59.723 47.619 0.00 0.00 32.73 1.52
1194 1281 1.664151 CGCTTGTCCTCGGGATTAAAC 59.336 52.381 0.00 0.00 32.73 2.01
1204 1291 5.045869 TCCTCGGGATTAAACTGTTTCTCAT 60.046 40.000 9.38 0.91 0.00 2.90
1206 1293 5.183228 TCGGGATTAAACTGTTTCTCATCC 58.817 41.667 20.51 20.51 0.00 3.51
1213 1300 8.877864 ATTAAACTGTTTCTCATCCATGGTTA 57.122 30.769 12.58 0.00 0.00 2.85
1216 1303 7.781324 AACTGTTTCTCATCCATGGTTATTT 57.219 32.000 12.58 0.00 0.00 1.40
1220 1307 6.873076 TGTTTCTCATCCATGGTTATTTTTGC 59.127 34.615 12.58 0.00 0.00 3.68
1226 1313 5.004922 TCCATGGTTATTTTTGCCGAATC 57.995 39.130 12.58 0.00 0.00 2.52
1238 1325 1.412343 TGCCGAATCGAATCAGATGGA 59.588 47.619 3.36 0.00 0.00 3.41
1250 1337 1.117994 CAGATGGACTGGAGCAGCTA 58.882 55.000 0.00 0.00 42.39 3.32
1262 1349 0.633921 AGCAGCTAGGAGGAGGAGAA 59.366 55.000 0.00 0.00 0.00 2.87
1269 1356 2.741055 GGAGGAGGAGAAGGCCTGC 61.741 68.421 5.69 3.13 45.78 4.85
1272 1359 2.270527 GAGGAGAAGGCCTGCACC 59.729 66.667 19.40 19.40 38.73 5.01
1301 1388 3.374402 AGGGACGAGACGGTGCTG 61.374 66.667 0.00 0.00 0.00 4.41
1340 1427 3.784338 CAAGGTCAGATTCTCTCTCTGC 58.216 50.000 0.00 0.00 39.98 4.26
1389 1476 4.640647 GTCTTGGGTTGGGAATATTCAGAC 59.359 45.833 17.07 13.37 0.00 3.51
1390 1477 4.540099 TCTTGGGTTGGGAATATTCAGACT 59.460 41.667 17.07 0.00 0.00 3.24
1391 1478 5.729229 TCTTGGGTTGGGAATATTCAGACTA 59.271 40.000 17.07 1.67 0.00 2.59
1392 1479 5.367945 TGGGTTGGGAATATTCAGACTAC 57.632 43.478 17.07 12.15 0.00 2.73
1452 1539 4.195416 CTCCTTGATCCACTTTTCTAGCC 58.805 47.826 0.00 0.00 0.00 3.93
1462 1549 3.132289 CACTTTTCTAGCCCCAGATACGA 59.868 47.826 0.00 0.00 0.00 3.43
1474 1561 4.811557 CCCCAGATACGAGAATCTTGTTTC 59.188 45.833 8.64 10.37 33.87 2.78
1478 1565 7.254590 CCCAGATACGAGAATCTTGTTTCATTC 60.255 40.741 18.79 6.53 33.87 2.67
1493 1580 7.218228 TGTTTCATTCATTATCACTGCACTT 57.782 32.000 0.00 0.00 0.00 3.16
1504 1615 3.120792 TCACTGCACTTTGACTCGTTAC 58.879 45.455 0.00 0.00 0.00 2.50
1542 1653 8.540507 AAGCTCCTATAGATACACAGAAGAAA 57.459 34.615 0.00 0.00 0.00 2.52
1559 1670 1.205655 GAAAATCTGGGCTTCCTTGGC 59.794 52.381 0.00 0.00 0.00 4.52
1561 1672 1.298953 AATCTGGGCTTCCTTGGCTA 58.701 50.000 0.00 0.00 0.00 3.93
1591 1702 4.551702 TCATCCGTTCCTGAATTCAGAA 57.448 40.909 32.49 21.73 46.59 3.02
1594 1705 6.649155 TCATCCGTTCCTGAATTCAGAAATA 58.351 36.000 32.49 14.52 46.59 1.40
1595 1706 7.109501 TCATCCGTTCCTGAATTCAGAAATAA 58.890 34.615 32.49 18.74 46.59 1.40
1597 1708 7.938140 TCCGTTCCTGAATTCAGAAATAATT 57.062 32.000 32.49 0.00 46.59 1.40
1598 1709 7.761409 TCCGTTCCTGAATTCAGAAATAATTG 58.239 34.615 32.49 15.53 46.59 2.32
1599 1710 7.393234 TCCGTTCCTGAATTCAGAAATAATTGT 59.607 33.333 32.49 0.00 46.59 2.71
1601 1712 7.008628 CGTTCCTGAATTCAGAAATAATTGTGC 59.991 37.037 32.49 7.11 46.59 4.57
1602 1713 7.465353 TCCTGAATTCAGAAATAATTGTGCA 57.535 32.000 32.49 3.85 46.59 4.57
1603 1714 7.541162 TCCTGAATTCAGAAATAATTGTGCAG 58.459 34.615 32.49 13.20 46.59 4.41
1604 1715 7.177216 TCCTGAATTCAGAAATAATTGTGCAGT 59.823 33.333 32.49 0.00 46.59 4.40
1605 1716 8.461222 CCTGAATTCAGAAATAATTGTGCAGTA 58.539 33.333 32.49 0.00 46.59 2.74
1606 1717 9.282247 CTGAATTCAGAAATAATTGTGCAGTAC 57.718 33.333 28.13 0.00 46.59 2.73
1607 1718 8.243426 TGAATTCAGAAATAATTGTGCAGTACC 58.757 33.333 3.38 0.00 30.21 3.34
1617 1728 1.145156 TGCAGTACCACGCAACAGT 59.855 52.632 0.07 0.00 34.59 3.55
1621 1732 1.726791 CAGTACCACGCAACAGTGATC 59.273 52.381 0.00 0.00 44.43 2.92
1623 1734 1.726791 GTACCACGCAACAGTGATCAG 59.273 52.381 0.00 0.00 44.43 2.90
1626 1737 0.165295 CACGCAACAGTGATCAGCTG 59.835 55.000 7.63 7.63 44.43 4.24
1630 1741 1.232119 CAACAGTGATCAGCTGTGCA 58.768 50.000 23.01 10.30 45.36 4.57
1631 1742 1.810755 CAACAGTGATCAGCTGTGCAT 59.189 47.619 23.01 11.23 45.36 3.96
1663 1774 2.030363 TGGCATTTTCTAAGCAACACGG 60.030 45.455 0.00 0.00 0.00 4.94
1672 1783 2.621763 AGCAACACGGCTTCTCTTG 58.378 52.632 0.00 0.00 42.71 3.02
1689 1800 1.168407 TTGGCAGAAGACTGTGCAGC 61.168 55.000 11.21 0.00 45.04 5.25
1733 1844 4.084745 GCAAATTGCACATGACTTGTCTTG 60.085 41.667 13.73 12.97 44.26 3.02
1764 1875 1.141645 CGCAGTACGCAAAAGTGGTA 58.858 50.000 9.69 0.00 42.60 3.25
1780 1891 3.500680 AGTGGTAAAACTGTGCGTATTGG 59.499 43.478 0.00 0.00 0.00 3.16
1782 1893 4.155280 GTGGTAAAACTGTGCGTATTGGAT 59.845 41.667 0.00 0.00 0.00 3.41
1784 1895 6.037830 GTGGTAAAACTGTGCGTATTGGATAT 59.962 38.462 0.00 0.00 0.00 1.63
1795 1906 7.066887 TGTGCGTATTGGATATGTCATTTTCTT 59.933 33.333 0.00 0.00 0.00 2.52
1815 1928 8.682936 TTTCTTAAGCAAGATGACTTCTCTTT 57.317 30.769 0.00 0.00 40.47 2.52
1821 1934 3.777106 AGATGACTTCTCTTTGCACCA 57.223 42.857 0.00 0.00 0.00 4.17
1825 1938 2.224378 TGACTTCTCTTTGCACCAGAGG 60.224 50.000 18.16 8.69 38.71 3.69
1829 1942 1.228245 TCTTTGCACCAGAGGCCAC 60.228 57.895 5.01 0.00 0.00 5.01
1844 1957 3.571590 AGGCCACCTCATACAACAAAAA 58.428 40.909 5.01 0.00 0.00 1.94
1854 1967 7.929245 ACCTCATACAACAAAAATACCAAAACC 59.071 33.333 0.00 0.00 0.00 3.27
1870 1983 9.849166 ATACCAAAACCAGTTCAATTAATAACG 57.151 29.630 0.00 0.00 0.00 3.18
1871 1984 7.718525 ACCAAAACCAGTTCAATTAATAACGT 58.281 30.769 0.00 0.00 0.00 3.99
1912 2025 3.574826 GGCAAGTAATTGGTTGGGTGTTA 59.425 43.478 4.91 0.00 0.00 2.41
1918 2031 1.169661 TTGGTTGGGTGTTAGCGCAG 61.170 55.000 11.47 0.00 32.94 5.18
1958 2071 6.547493 TTTTTCTTTGTCACGTTTCAATCG 57.453 33.333 3.53 0.00 0.00 3.34
1960 2073 4.446857 TCTTTGTCACGTTTCAATCGTC 57.553 40.909 3.53 0.00 39.55 4.20
1970 2083 4.143389 ACGTTTCAATCGTCTTGTTCGATC 60.143 41.667 1.50 0.00 45.33 3.69
1979 2092 0.721718 CTTGTTCGATCGTGCTTCCC 59.278 55.000 15.94 0.00 0.00 3.97
1980 2093 0.320374 TTGTTCGATCGTGCTTCCCT 59.680 50.000 15.94 0.00 0.00 4.20
1981 2094 1.179152 TGTTCGATCGTGCTTCCCTA 58.821 50.000 15.94 0.00 0.00 3.53
1982 2095 1.134367 TGTTCGATCGTGCTTCCCTAG 59.866 52.381 15.94 0.00 0.00 3.02
1993 2106 3.778954 GCTTCCCTAGCCATCTTACAT 57.221 47.619 0.00 0.00 44.48 2.29
1995 2108 5.228945 GCTTCCCTAGCCATCTTACATAA 57.771 43.478 0.00 0.00 44.48 1.90
1996 2109 5.810095 GCTTCCCTAGCCATCTTACATAAT 58.190 41.667 0.00 0.00 44.48 1.28
1997 2110 5.877564 GCTTCCCTAGCCATCTTACATAATC 59.122 44.000 0.00 0.00 44.48 1.75
1999 2112 7.633018 TTCCCTAGCCATCTTACATAATCTT 57.367 36.000 0.00 0.00 0.00 2.40
2000 2113 7.009179 TCCCTAGCCATCTTACATAATCTTG 57.991 40.000 0.00 0.00 0.00 3.02
2016 2131 5.806654 AATCTTGTACATGCCCTGTTTTT 57.193 34.783 0.00 0.00 39.39 1.94
2040 2155 4.133078 GGGAGAGATAACCTGAAGCAATG 58.867 47.826 0.00 0.00 0.00 2.82
2042 2157 5.455899 GGGAGAGATAACCTGAAGCAATGAT 60.456 44.000 0.00 0.00 0.00 2.45
2045 2160 5.104193 AGAGATAACCTGAAGCAATGATGGT 60.104 40.000 0.00 0.00 39.43 3.55
2061 2176 5.534207 TGATGGTTTGCTCAATTTTCACT 57.466 34.783 0.00 0.00 0.00 3.41
2066 2181 7.071014 TGGTTTGCTCAATTTTCACTTTTTC 57.929 32.000 0.00 0.00 0.00 2.29
2071 2186 7.042797 TGCTCAATTTTCACTTTTTCTAGCT 57.957 32.000 0.00 0.00 0.00 3.32
2072 2187 7.491682 TGCTCAATTTTCACTTTTTCTAGCTT 58.508 30.769 0.00 0.00 0.00 3.74
2082 2197 9.950680 TTCACTTTTTCTAGCTTGATTACTTTG 57.049 29.630 0.00 0.00 0.00 2.77
2083 2198 8.076178 TCACTTTTTCTAGCTTGATTACTTTGC 58.924 33.333 0.00 0.00 0.00 3.68
2084 2199 8.078596 CACTTTTTCTAGCTTGATTACTTTGCT 58.921 33.333 0.00 0.00 37.72 3.91
2085 2200 8.078596 ACTTTTTCTAGCTTGATTACTTTGCTG 58.921 33.333 0.00 0.00 35.47 4.41
2093 2208 6.604795 AGCTTGATTACTTTGCTGTATCCAAT 59.395 34.615 0.00 0.00 32.32 3.16
2121 2236 4.566004 CAATTTCTGGTCTCCAAGACGTA 58.434 43.478 0.00 0.00 45.96 3.57
2122 2237 5.178797 CAATTTCTGGTCTCCAAGACGTAT 58.821 41.667 0.00 0.00 45.96 3.06
2123 2238 4.884668 TTTCTGGTCTCCAAGACGTATT 57.115 40.909 0.00 0.00 45.96 1.89
2124 2239 3.868757 TCTGGTCTCCAAGACGTATTG 57.131 47.619 15.86 15.86 45.96 1.90
2125 2240 2.496070 TCTGGTCTCCAAGACGTATTGG 59.504 50.000 31.44 31.44 45.96 3.16
2132 2247 2.561733 CAAGACGTATTGGAGCGAGA 57.438 50.000 15.05 0.00 0.00 4.04
2133 2248 2.186076 CAAGACGTATTGGAGCGAGAC 58.814 52.381 15.05 0.00 0.00 3.36
2134 2249 1.752683 AGACGTATTGGAGCGAGACT 58.247 50.000 0.00 0.00 0.00 3.24
2135 2250 1.671845 AGACGTATTGGAGCGAGACTC 59.328 52.381 0.00 0.00 45.45 3.36
2136 2251 1.671845 GACGTATTGGAGCGAGACTCT 59.328 52.381 0.03 0.00 45.48 3.24
2155 2270 5.065914 ACTCTTGCTGCATCTTTTGTCTTA 58.934 37.500 1.84 0.00 0.00 2.10
2201 2316 4.187056 GCAGGAGGCACGTAACTC 57.813 61.111 9.51 9.51 43.97 3.01
2202 2317 1.292223 GCAGGAGGCACGTAACTCA 59.708 57.895 17.27 0.00 43.97 3.41
2203 2318 1.014564 GCAGGAGGCACGTAACTCAC 61.015 60.000 17.27 9.02 43.97 3.51
2204 2319 0.603569 CAGGAGGCACGTAACTCACT 59.396 55.000 17.27 10.65 35.45 3.41
2325 2440 3.579534 ATCAGCTGGATGAAAGATGCT 57.420 42.857 15.13 0.00 34.06 3.79
2332 2447 3.349927 TGGATGAAAGATGCTGGACTTG 58.650 45.455 0.00 0.00 0.00 3.16
2340 2455 0.037697 ATGCTGGACTTGCGACGTAA 60.038 50.000 0.00 0.00 0.00 3.18
2375 2490 2.224079 TGCAGTCATTTTCTCACGCTTC 59.776 45.455 0.00 0.00 0.00 3.86
2377 2492 2.807967 CAGTCATTTTCTCACGCTTCCA 59.192 45.455 0.00 0.00 0.00 3.53
2381 2496 3.882888 TCATTTTCTCACGCTTCCAACTT 59.117 39.130 0.00 0.00 0.00 2.66
2382 2497 4.338118 TCATTTTCTCACGCTTCCAACTTT 59.662 37.500 0.00 0.00 0.00 2.66
2384 2499 5.821516 TTTTCTCACGCTTCCAACTTTAA 57.178 34.783 0.00 0.00 0.00 1.52
2385 2500 4.806342 TTCTCACGCTTCCAACTTTAAC 57.194 40.909 0.00 0.00 0.00 2.01
2386 2501 4.067972 TCTCACGCTTCCAACTTTAACT 57.932 40.909 0.00 0.00 0.00 2.24
2387 2502 3.807622 TCTCACGCTTCCAACTTTAACTG 59.192 43.478 0.00 0.00 0.00 3.16
2388 2503 3.799366 TCACGCTTCCAACTTTAACTGA 58.201 40.909 0.00 0.00 0.00 3.41
2390 2505 2.876550 ACGCTTCCAACTTTAACTGACC 59.123 45.455 0.00 0.00 0.00 4.02
2392 2507 3.058914 CGCTTCCAACTTTAACTGACCAG 60.059 47.826 0.00 0.00 0.00 4.00
2407 2522 6.748333 ACTGACCAGTTCATGTTCATTATG 57.252 37.500 0.00 0.00 38.83 1.90
2417 2532 4.949238 TCATGTTCATTATGAAGGTGGGTG 59.051 41.667 8.00 2.28 37.00 4.61
2432 2547 3.629796 GGTGGGTGGATCAAATGGGTAAT 60.630 47.826 0.00 0.00 0.00 1.89
2450 2565 7.057264 TGGGTAATATTCATGGTCGATTTGAA 58.943 34.615 9.22 9.22 34.18 2.69
2453 2568 5.673337 ATATTCATGGTCGATTTGAACCG 57.327 39.130 9.04 0.00 32.61 4.44
2462 2577 3.187637 GTCGATTTGAACCGTCCAATTCA 59.812 43.478 0.00 0.00 33.03 2.57
2468 2583 3.138304 TGAACCGTCCAATTCAACAGAG 58.862 45.455 0.00 0.00 31.95 3.35
2475 2590 3.823304 GTCCAATTCAACAGAGAAGGCTT 59.177 43.478 0.00 0.00 0.00 4.35
2489 2604 6.771749 CAGAGAAGGCTTTATTGATTGGATCT 59.228 38.462 0.00 0.00 0.00 2.75
2492 2607 6.545298 AGAAGGCTTTATTGATTGGATCTCAC 59.455 38.462 0.00 0.00 0.00 3.51
2531 2646 6.998074 TCAACTATCAACTCCTTGTTTCATGT 59.002 34.615 0.00 0.00 36.63 3.21
2547 2662 9.868277 TTGTTTCATGTTGTGATTCTTTTAGTT 57.132 25.926 0.00 0.00 36.54 2.24
2573 2690 3.878160 AGAGCTACCACTGACTAAAGC 57.122 47.619 0.00 0.00 0.00 3.51
2580 2697 5.336531 GCTACCACTGACTAAAGCTGTCTTA 60.337 44.000 4.51 0.00 35.63 2.10
2757 2875 5.127031 AGTGTTTCCAGTTTAATGTTGCTGT 59.873 36.000 0.00 0.00 0.00 4.40
2853 2971 1.145803 GGTTACGCGAGCCATTATCC 58.854 55.000 15.93 0.00 0.00 2.59
2920 3038 2.481952 GACACCAATCTGCACTGAACTC 59.518 50.000 0.00 0.00 0.00 3.01
2949 3067 9.965824 CCTTGTCTTGTGTATTTAATTTCACTT 57.034 29.630 11.68 0.00 0.00 3.16
2951 3069 9.959749 TTGTCTTGTGTATTTAATTTCACTTCC 57.040 29.630 11.68 2.67 0.00 3.46
2970 3088 7.550551 TCACTTCCTCAGAGTGCTTTAATATTG 59.449 37.037 0.00 0.00 43.23 1.90
3007 3125 3.252701 GCTTCCAGTCAGCATAATCCATG 59.747 47.826 0.00 0.00 37.22 3.66
3008 3126 4.711399 CTTCCAGTCAGCATAATCCATGA 58.289 43.478 0.00 0.00 36.69 3.07
3083 3237 2.669391 GCAGTGTCTGTTGCCTAATTGC 60.669 50.000 0.00 0.00 34.28 3.56
3138 3293 2.359230 GGTGTGAGGTCTGCTGCC 60.359 66.667 0.00 0.00 0.00 4.85
3142 3297 0.607217 TGTGAGGTCTGCTGCCATTG 60.607 55.000 0.00 0.00 0.00 2.82
3147 3302 3.199727 TGAGGTCTGCTGCCATTGTAATA 59.800 43.478 0.00 0.00 0.00 0.98
3289 3446 3.447944 TGTACGTGTACATGGCTAATGGA 59.552 43.478 19.05 0.00 40.77 3.41
3304 3461 5.452777 GCTAATGGATTGGCTTTCGTTATC 58.547 41.667 0.76 0.00 40.57 1.75
3305 3462 5.239525 GCTAATGGATTGGCTTTCGTTATCT 59.760 40.000 0.76 0.00 40.57 1.98
3333 3491 6.912591 GCCGTTTTGTTATTCAGGATTCATAG 59.087 38.462 0.00 0.00 0.00 2.23
3352 3510 6.939622 TCATAGCCTATTAGATGTCATGTGG 58.060 40.000 0.00 0.00 0.00 4.17
3359 3517 6.260936 CCTATTAGATGTCATGTGGTTTGACC 59.739 42.308 0.00 0.00 42.25 4.02
3360 3518 2.795329 AGATGTCATGTGGTTTGACCC 58.205 47.619 0.00 0.00 42.25 4.46
3407 3640 8.599055 TTGTCTTTAGATCACAGATATGCATC 57.401 34.615 0.19 0.00 0.00 3.91
3429 3662 7.041303 GCATCATGAATGTCTGAATATGTCACT 60.041 37.037 0.00 0.00 37.71 3.41
3593 3826 1.882623 CTGACAAGAGGTTGCCCTTTC 59.117 52.381 0.00 0.00 42.86 2.62
3698 3932 0.038159 CGTTCAAGAGGCTCTTCGGT 60.038 55.000 26.37 3.40 33.78 4.69
3715 3949 0.673956 GGTTGAACTCCTTCGAGGCC 60.674 60.000 0.00 0.00 40.77 5.19
3717 3951 0.034896 TTGAACTCCTTCGAGGCCAC 59.965 55.000 5.01 0.00 40.77 5.01
3736 3970 1.299562 CTGCTGCTGCTCTTGGTCAG 61.300 60.000 17.00 0.00 40.48 3.51
3760 3994 0.966370 AGTACAGCCCGGAGTCTGTC 60.966 60.000 21.53 15.08 42.06 3.51
3910 4155 1.679898 CCTCCGATATCCCCTTGGC 59.320 63.158 0.00 0.00 0.00 4.52
3922 4167 2.168054 CCTTGGCGTCGTAAAAGGG 58.832 57.895 12.31 0.00 36.36 3.95
3937 4182 3.785859 GGGATCGCAGGGCAGACA 61.786 66.667 4.64 0.00 0.00 3.41
3955 4200 2.744202 GACACGATTGAAGGTGCATTCT 59.256 45.455 0.00 0.00 37.68 2.40
3976 4221 9.766277 CATTCTAGTTCTCTGCTATTTTTGTTC 57.234 33.333 0.00 0.00 0.00 3.18
3981 4226 4.827692 TCTCTGCTATTTTTGTTCCGCTA 58.172 39.130 0.00 0.00 0.00 4.26
4016 4261 9.520515 ACATCAACACTATCTTAAGACCAAAAT 57.479 29.630 7.48 0.00 0.00 1.82
4116 4369 6.509418 TCAGGTTGCTATTTGAATACCAAC 57.491 37.500 11.07 11.07 37.01 3.77
4137 4390 6.755141 CCAACTATTTCAAAATCATCAGCCAG 59.245 38.462 0.00 0.00 0.00 4.85
4138 4391 5.899299 ACTATTTCAAAATCATCAGCCAGC 58.101 37.500 0.00 0.00 0.00 4.85
4150 4409 2.438434 GCCAGCACCGCCTGTTAT 60.438 61.111 0.00 0.00 0.00 1.89
4152 4411 0.746563 GCCAGCACCGCCTGTTATTA 60.747 55.000 0.00 0.00 0.00 0.98
4154 4413 1.400494 CCAGCACCGCCTGTTATTAAC 59.600 52.381 0.00 0.00 0.00 2.01
4155 4414 1.062002 CAGCACCGCCTGTTATTAACG 59.938 52.381 2.30 0.00 0.00 3.18
4157 4416 1.326548 GCACCGCCTGTTATTAACGAG 59.673 52.381 2.30 1.76 0.00 4.18
4180 4721 4.853924 AAACAATCATCAGCGGTCTTTT 57.146 36.364 0.00 0.00 0.00 2.27
4202 4743 2.961526 TTAATCGGTCAGCAGTCCTC 57.038 50.000 0.00 0.00 0.00 3.71
4203 4744 2.145397 TAATCGGTCAGCAGTCCTCT 57.855 50.000 0.00 0.00 0.00 3.69
4216 4757 3.005155 GCAGTCCTCTTGTTTGAGCAAAT 59.995 43.478 0.00 0.00 33.02 2.32
4217 4758 4.543692 CAGTCCTCTTGTTTGAGCAAATG 58.456 43.478 0.00 0.00 33.02 2.32
4267 4812 0.321653 AACCCCTTGCTAGTTCGCTG 60.322 55.000 0.00 0.00 0.00 5.18
4271 4816 1.687494 CCTTGCTAGTTCGCTGCGAC 61.687 60.000 25.94 18.81 34.89 5.19
4276 4821 0.029035 CTAGTTCGCTGCGACGGTAT 59.971 55.000 25.94 11.11 34.89 2.73
4279 4824 1.226575 TTCGCTGCGACGGTATGAG 60.227 57.895 25.94 0.00 34.89 2.90
4280 4825 3.323136 CGCTGCGACGGTATGAGC 61.323 66.667 18.66 0.00 0.00 4.26
4327 4872 3.358554 ACTCCTAGTGAACCGCTGA 57.641 52.632 0.00 0.00 0.00 4.26
4329 4874 1.271982 ACTCCTAGTGAACCGCTGAGA 60.272 52.381 0.00 0.00 0.00 3.27
4330 4875 2.028130 CTCCTAGTGAACCGCTGAGAT 58.972 52.381 0.00 0.00 0.00 2.75
4361 4906 1.164411 CGCCATCACCAAAGTTGCTA 58.836 50.000 0.00 0.00 0.00 3.49
4411 4964 5.578727 CCTGCTCTCAGTGTGATTTTAGTAC 59.421 44.000 0.00 0.00 38.66 2.73
4413 4966 5.048294 TGCTCTCAGTGTGATTTTAGTACGA 60.048 40.000 0.00 0.00 0.00 3.43
4440 5026 3.055819 TCTCAGATTCCTACAGCAACCAC 60.056 47.826 0.00 0.00 0.00 4.16
4470 5056 2.689034 ACCCCTAGCTCTGTGGCC 60.689 66.667 0.00 0.00 0.00 5.36
4486 5072 2.229062 GTGGCCTTTGCTTCCTAAGTTC 59.771 50.000 3.32 0.00 37.74 3.01
4500 5086 7.360946 GCTTCCTAAGTTCGAAATGCTTAGAAA 60.361 37.037 24.71 15.84 42.35 2.52
4642 5228 1.301716 GTGCAAAGACCCGAGCAGA 60.302 57.895 0.00 0.00 37.72 4.26
4766 5352 1.308216 ATCCCAGGCCAGGTAAGCT 60.308 57.895 13.97 0.00 0.00 3.74
4767 5353 1.348775 ATCCCAGGCCAGGTAAGCTC 61.349 60.000 13.97 0.00 0.00 4.09
4768 5354 2.300967 CCCAGGCCAGGTAAGCTCA 61.301 63.158 13.97 0.00 0.00 4.26
4770 5356 0.179034 CCAGGCCAGGTAAGCTCATC 60.179 60.000 5.01 0.00 0.00 2.92
4771 5357 0.543277 CAGGCCAGGTAAGCTCATCA 59.457 55.000 5.01 0.00 0.00 3.07
4772 5358 0.543749 AGGCCAGGTAAGCTCATCAC 59.456 55.000 5.01 0.00 0.00 3.06
4774 5360 0.253044 GCCAGGTAAGCTCATCACCA 59.747 55.000 8.83 0.00 34.62 4.17
4775 5361 1.745141 GCCAGGTAAGCTCATCACCAG 60.745 57.143 8.83 2.14 34.62 4.00
4776 5362 1.134280 CCAGGTAAGCTCATCACCAGG 60.134 57.143 8.83 6.65 34.62 4.45
4777 5363 1.556911 CAGGTAAGCTCATCACCAGGT 59.443 52.381 8.83 0.00 34.62 4.00
4778 5364 1.556911 AGGTAAGCTCATCACCAGGTG 59.443 52.381 14.19 14.19 34.62 4.00
4781 5367 0.403271 AAGCTCATCACCAGGTGCTT 59.597 50.000 15.64 11.37 36.16 3.91
4782 5368 0.322277 AGCTCATCACCAGGTGCTTG 60.322 55.000 15.64 14.42 32.98 4.01
4783 5369 0.607489 GCTCATCACCAGGTGCTTGT 60.607 55.000 15.64 0.00 32.98 3.16
4784 5370 1.446907 CTCATCACCAGGTGCTTGTC 58.553 55.000 15.64 0.00 32.98 3.18
4785 5371 0.764271 TCATCACCAGGTGCTTGTCA 59.236 50.000 15.64 0.00 32.98 3.58
4791 5397 1.143684 ACCAGGTGCTTGTCATTGTCT 59.856 47.619 0.00 0.00 0.00 3.41
4792 5398 2.371841 ACCAGGTGCTTGTCATTGTCTA 59.628 45.455 0.00 0.00 0.00 2.59
4831 5443 4.778415 CCTCACCTGTCGACGCCG 62.778 72.222 11.62 2.86 37.07 6.46
4832 5444 4.778415 CTCACCTGTCGACGCCGG 62.778 72.222 11.62 13.33 36.24 6.13
4845 5457 2.668550 GCCGGTCACCAGGTGAAC 60.669 66.667 26.08 26.08 44.49 3.18
4970 5582 1.805945 CCGTCGAGCACAAGGTAGC 60.806 63.158 0.00 0.00 0.00 3.58
4971 5583 1.805945 CGTCGAGCACAAGGTAGCC 60.806 63.158 0.00 0.00 0.00 3.93
4972 5584 1.592223 GTCGAGCACAAGGTAGCCT 59.408 57.895 0.00 0.00 33.87 4.58
4975 5587 0.037326 CGAGCACAAGGTAGCCTGAA 60.037 55.000 0.00 0.00 32.13 3.02
4976 5588 1.443802 GAGCACAAGGTAGCCTGAAC 58.556 55.000 0.00 0.00 32.13 3.18
4977 5589 1.002544 GAGCACAAGGTAGCCTGAACT 59.997 52.381 0.00 0.00 32.13 3.01
4978 5590 1.160137 GCACAAGGTAGCCTGAACTG 58.840 55.000 0.00 0.00 32.13 3.16
4979 5591 1.160137 CACAAGGTAGCCTGAACTGC 58.840 55.000 0.00 0.00 32.13 4.40
4980 5592 1.059913 ACAAGGTAGCCTGAACTGCT 58.940 50.000 0.00 0.00 42.81 4.24
4981 5593 1.271054 ACAAGGTAGCCTGAACTGCTG 60.271 52.381 0.00 0.00 39.91 4.41
4982 5594 0.322008 AAGGTAGCCTGAACTGCTGC 60.322 55.000 0.00 0.00 39.91 5.25
4983 5595 1.197430 AGGTAGCCTGAACTGCTGCT 61.197 55.000 0.00 0.00 40.71 4.24
4984 5596 1.023513 GGTAGCCTGAACTGCTGCTG 61.024 60.000 4.89 4.89 40.71 4.41
4986 5598 0.248565 TAGCCTGAACTGCTGCTGAG 59.751 55.000 13.69 0.00 39.91 3.35
4987 5599 2.039405 GCCTGAACTGCTGCTGAGG 61.039 63.158 13.69 10.42 0.00 3.86
4988 5600 2.039405 CCTGAACTGCTGCTGAGGC 61.039 63.158 13.69 2.88 39.26 4.70
4997 5609 3.985877 TGCTGAGGCATTTGACGG 58.014 55.556 0.00 0.00 44.28 4.79
4998 5610 2.334946 TGCTGAGGCATTTGACGGC 61.335 57.895 0.00 0.00 44.28 5.68
4999 5611 2.787249 CTGAGGCATTTGACGGCG 59.213 61.111 4.80 4.80 0.00 6.46
5000 5612 2.745884 TGAGGCATTTGACGGCGG 60.746 61.111 13.24 0.00 0.00 6.13
5001 5613 4.179579 GAGGCATTTGACGGCGGC 62.180 66.667 13.24 9.67 0.00 6.53
5005 5617 4.178214 CATTTGACGGCGGCGCAT 62.178 61.111 34.36 21.44 0.00 4.73
5006 5618 4.178214 ATTTGACGGCGGCGCATG 62.178 61.111 34.36 26.42 0.00 4.06
5014 5626 3.580193 GCGGCGCATGAGCTGAAT 61.580 61.111 31.30 0.00 45.94 2.57
5022 5634 3.727723 GCGCATGAGCTGAATCATTTAAC 59.272 43.478 14.75 0.00 37.84 2.01
5023 5635 3.964347 CGCATGAGCTGAATCATTTAACG 59.036 43.478 0.00 0.00 37.84 3.18
5024 5636 4.285292 GCATGAGCTGAATCATTTAACGG 58.715 43.478 0.00 0.00 37.84 4.44
5025 5637 4.285292 CATGAGCTGAATCATTTAACGGC 58.715 43.478 0.00 0.00 37.84 5.68
5026 5638 2.682856 TGAGCTGAATCATTTAACGGCC 59.317 45.455 0.00 0.00 35.54 6.13
5030 5642 1.740585 TGAATCATTTAACGGCCGGTG 59.259 47.619 29.82 17.36 0.00 4.94
5031 5643 1.064952 GAATCATTTAACGGCCGGTGG 59.935 52.381 29.82 13.03 0.00 4.61
5032 5644 0.750182 ATCATTTAACGGCCGGTGGG 60.750 55.000 29.82 12.62 0.00 4.61
5033 5645 1.377463 CATTTAACGGCCGGTGGGA 60.377 57.895 29.82 12.17 34.06 4.37
5034 5646 0.750182 CATTTAACGGCCGGTGGGAT 60.750 55.000 29.82 14.17 34.06 3.85
5035 5647 0.750182 ATTTAACGGCCGGTGGGATG 60.750 55.000 29.82 0.00 34.06 3.51
5041 5653 1.001887 GGCCGGTGGGATGTGTTTA 60.002 57.895 1.90 0.00 34.06 2.01
5042 5654 0.395173 GGCCGGTGGGATGTGTTTAT 60.395 55.000 1.90 0.00 34.06 1.40
5043 5655 0.738389 GCCGGTGGGATGTGTTTATG 59.262 55.000 1.90 0.00 34.06 1.90
5044 5656 1.953311 GCCGGTGGGATGTGTTTATGT 60.953 52.381 1.90 0.00 34.06 2.29
5045 5657 1.742831 CCGGTGGGATGTGTTTATGTG 59.257 52.381 0.00 0.00 34.06 3.21
5046 5658 1.132262 CGGTGGGATGTGTTTATGTGC 59.868 52.381 0.00 0.00 0.00 4.57
5496 6188 3.439129 TCGCTGAGACTCTTTATTCACGA 59.561 43.478 3.68 0.00 0.00 4.35
5507 6199 4.209703 TCTTTATTCACGAAACGGTGTGAC 59.790 41.667 0.00 0.00 44.25 3.67
5548 6241 2.355363 CGCACGGTCCTTTGTCGA 60.355 61.111 0.00 0.00 0.00 4.20
5549 6242 2.654912 CGCACGGTCCTTTGTCGAC 61.655 63.158 9.11 9.11 0.00 4.20
5550 6243 1.300697 GCACGGTCCTTTGTCGACT 60.301 57.895 17.92 0.00 0.00 4.18
5551 6244 1.557443 GCACGGTCCTTTGTCGACTG 61.557 60.000 17.92 4.19 41.53 3.51
5552 6245 1.300697 ACGGTCCTTTGTCGACTGC 60.301 57.895 17.92 0.55 39.77 4.40
5553 6246 1.300620 CGGTCCTTTGTCGACTGCA 60.301 57.895 17.92 0.00 30.25 4.41
5554 6247 0.670546 CGGTCCTTTGTCGACTGCAT 60.671 55.000 17.92 0.00 30.25 3.96
5555 6248 1.079503 GGTCCTTTGTCGACTGCATC 58.920 55.000 17.92 3.20 0.00 3.91
5569 6262 2.071540 CTGCATCGAAGCACTTTCTGA 58.928 47.619 11.93 0.00 40.11 3.27
5571 6264 1.202009 GCATCGAAGCACTTTCTGAGC 60.202 52.381 7.93 0.00 33.44 4.26
5580 6273 2.575532 CACTTTCTGAGCTCCCAAACA 58.424 47.619 12.15 0.00 0.00 2.83
5610 6303 4.142271 CGGCTTCAATAGAGTCTCAGAACT 60.142 45.833 0.00 0.00 0.00 3.01
5653 6346 2.040412 GGTCCTCAAACATGGAGAACCT 59.960 50.000 0.00 0.00 36.89 3.50
5662 6355 0.904865 ATGGAGAACCTGTCCTGCGA 60.905 55.000 0.00 0.00 34.86 5.10
5664 6357 0.179097 GGAGAACCTGTCCTGCGATC 60.179 60.000 0.00 0.00 0.00 3.69
5665 6358 0.532573 GAGAACCTGTCCTGCGATCA 59.467 55.000 0.00 0.00 0.00 2.92
5668 6361 0.036952 AACCTGTCCTGCGATCAGTG 60.037 55.000 0.00 0.00 38.66 3.66
5669 6362 1.153489 CCTGTCCTGCGATCAGTGG 60.153 63.158 0.00 0.00 38.66 4.00
5671 6364 2.887568 GTCCTGCGATCAGTGGCG 60.888 66.667 0.00 2.53 38.66 5.69
5672 6365 4.147449 TCCTGCGATCAGTGGCGG 62.147 66.667 8.09 0.87 38.66 6.13
5673 6366 4.147449 CCTGCGATCAGTGGCGGA 62.147 66.667 8.09 4.78 37.62 5.54
5674 6367 2.584418 CTGCGATCAGTGGCGGAG 60.584 66.667 11.79 11.79 37.62 4.63
5694 6387 3.722728 GCTTGGGCTGAATTTATGGAG 57.277 47.619 0.00 0.00 35.22 3.86
5695 6388 2.363359 GCTTGGGCTGAATTTATGGAGG 59.637 50.000 0.00 0.00 35.22 4.30
5696 6389 2.754012 TGGGCTGAATTTATGGAGGG 57.246 50.000 0.00 0.00 0.00 4.30
5697 6390 1.217689 TGGGCTGAATTTATGGAGGGG 59.782 52.381 0.00 0.00 0.00 4.79
5698 6391 1.332195 GGCTGAATTTATGGAGGGGC 58.668 55.000 0.00 0.00 0.00 5.80
5699 6392 1.411501 GGCTGAATTTATGGAGGGGCA 60.412 52.381 0.00 0.00 0.00 5.36
5700 6393 2.387757 GCTGAATTTATGGAGGGGCAA 58.612 47.619 0.00 0.00 0.00 4.52
5701 6394 2.765699 GCTGAATTTATGGAGGGGCAAA 59.234 45.455 0.00 0.00 0.00 3.68
5702 6395 3.389002 GCTGAATTTATGGAGGGGCAAAT 59.611 43.478 0.00 0.00 0.00 2.32
5703 6396 4.741536 GCTGAATTTATGGAGGGGCAAATG 60.742 45.833 0.00 0.00 0.00 2.32
5704 6397 3.710677 TGAATTTATGGAGGGGCAAATGG 59.289 43.478 0.00 0.00 0.00 3.16
5705 6398 2.173126 TTTATGGAGGGGCAAATGGG 57.827 50.000 0.00 0.00 0.00 4.00
5706 6399 0.398381 TTATGGAGGGGCAAATGGGC 60.398 55.000 0.00 0.00 42.44 5.36
5707 6400 1.295915 TATGGAGGGGCAAATGGGCT 61.296 55.000 0.00 0.00 42.84 5.19
5708 6401 2.761213 GGAGGGGCAAATGGGCTG 60.761 66.667 0.00 0.00 42.84 4.85
5709 6402 2.761213 GAGGGGCAAATGGGCTGG 60.761 66.667 0.00 0.00 42.84 4.85
5710 6403 3.275271 AGGGGCAAATGGGCTGGA 61.275 61.111 0.00 0.00 42.84 3.86
5711 6404 2.761213 GGGGCAAATGGGCTGGAG 60.761 66.667 0.00 0.00 42.84 3.86
5712 6405 2.761213 GGGCAAATGGGCTGGAGG 60.761 66.667 0.00 0.00 42.84 4.30
5713 6406 2.761213 GGCAAATGGGCTGGAGGG 60.761 66.667 0.00 0.00 39.42 4.30
5714 6407 2.761213 GCAAATGGGCTGGAGGGG 60.761 66.667 0.00 0.00 0.00 4.79
5715 6408 2.761213 CAAATGGGCTGGAGGGGC 60.761 66.667 0.00 0.00 0.00 5.80
5716 6409 3.275271 AAATGGGCTGGAGGGGCA 61.275 61.111 0.00 0.00 0.00 5.36
5717 6410 2.867508 AAATGGGCTGGAGGGGCAA 61.868 57.895 0.00 0.00 0.00 4.52
5718 6411 2.810488 AAATGGGCTGGAGGGGCAAG 62.810 60.000 0.00 0.00 0.00 4.01
5720 6413 3.661648 GGGCTGGAGGGGCAAGAA 61.662 66.667 0.00 0.00 0.00 2.52
5721 6414 2.440599 GGCTGGAGGGGCAAGAAA 59.559 61.111 0.00 0.00 0.00 2.52
5722 6415 1.979155 GGCTGGAGGGGCAAGAAAC 60.979 63.158 0.00 0.00 0.00 2.78
5723 6416 1.228552 GCTGGAGGGGCAAGAAACA 60.229 57.895 0.00 0.00 0.00 2.83
5724 6417 0.613012 GCTGGAGGGGCAAGAAACAT 60.613 55.000 0.00 0.00 0.00 2.71
5725 6418 1.180029 CTGGAGGGGCAAGAAACATG 58.820 55.000 0.00 0.00 0.00 3.21
5726 6419 0.899717 TGGAGGGGCAAGAAACATGC 60.900 55.000 0.00 0.00 43.08 4.06
5727 6420 0.613012 GGAGGGGCAAGAAACATGCT 60.613 55.000 0.00 0.00 43.34 3.79
5728 6421 1.260544 GAGGGGCAAGAAACATGCTT 58.739 50.000 0.00 0.00 43.34 3.91
5729 6422 1.620323 GAGGGGCAAGAAACATGCTTT 59.380 47.619 0.00 0.00 43.34 3.51
5730 6423 2.037641 GAGGGGCAAGAAACATGCTTTT 59.962 45.455 0.00 0.00 43.34 2.27
5731 6424 3.238597 AGGGGCAAGAAACATGCTTTTA 58.761 40.909 0.00 0.00 43.34 1.52
5732 6425 3.259123 AGGGGCAAGAAACATGCTTTTAG 59.741 43.478 0.00 0.00 43.34 1.85
5733 6426 3.588955 GGGCAAGAAACATGCTTTTAGG 58.411 45.455 0.00 0.00 43.34 2.69
5734 6427 3.006859 GGGCAAGAAACATGCTTTTAGGT 59.993 43.478 0.00 0.00 43.34 3.08
5735 6428 4.503123 GGGCAAGAAACATGCTTTTAGGTT 60.503 41.667 0.00 0.00 43.34 3.50
5736 6429 4.448732 GGCAAGAAACATGCTTTTAGGTTG 59.551 41.667 0.00 0.00 43.34 3.77
5737 6430 5.288804 GCAAGAAACATGCTTTTAGGTTGA 58.711 37.500 0.00 0.00 40.64 3.18
5738 6431 5.928264 GCAAGAAACATGCTTTTAGGTTGAT 59.072 36.000 0.00 0.00 40.64 2.57
5739 6432 6.424812 GCAAGAAACATGCTTTTAGGTTGATT 59.575 34.615 0.00 0.00 40.64 2.57
5740 6433 7.041848 GCAAGAAACATGCTTTTAGGTTGATTT 60.042 33.333 0.00 0.00 40.64 2.17
5741 6434 8.829612 CAAGAAACATGCTTTTAGGTTGATTTT 58.170 29.630 0.00 0.00 0.00 1.82
5745 6438 9.830975 AAACATGCTTTTAGGTTGATTTTAACT 57.169 25.926 0.00 0.00 0.00 2.24
5746 6439 9.476202 AACATGCTTTTAGGTTGATTTTAACTC 57.524 29.630 0.00 0.00 0.00 3.01
5747 6440 7.807907 ACATGCTTTTAGGTTGATTTTAACTCG 59.192 33.333 0.00 0.00 0.00 4.18
5748 6441 7.499321 TGCTTTTAGGTTGATTTTAACTCGA 57.501 32.000 0.00 0.00 0.00 4.04
5749 6442 7.357303 TGCTTTTAGGTTGATTTTAACTCGAC 58.643 34.615 0.00 0.00 0.00 4.20
5750 6443 7.012515 TGCTTTTAGGTTGATTTTAACTCGACA 59.987 33.333 5.30 0.00 0.00 4.35
5751 6444 8.021396 GCTTTTAGGTTGATTTTAACTCGACAT 58.979 33.333 5.30 1.03 0.00 3.06
6115 6808 3.214328 TCTTCTTGCAGAAAACCACCTC 58.786 45.455 0.00 0.00 33.19 3.85
6142 6835 8.899771 AGAGTTTATTTAATTACATGGAACCCG 58.100 33.333 0.00 0.00 0.00 5.28
6143 6836 8.584063 AGTTTATTTAATTACATGGAACCCGT 57.416 30.769 0.00 0.00 0.00 5.28
6144 6837 8.463607 AGTTTATTTAATTACATGGAACCCGTG 58.536 33.333 0.00 3.80 45.34 4.94
6145 6838 8.460428 GTTTATTTAATTACATGGAACCCGTGA 58.540 33.333 11.78 0.00 42.73 4.35
6172 6865 9.719355 AAAAATGTCCCTAAAATTACATGGAAC 57.281 29.630 0.00 0.00 33.04 3.62
6173 6866 7.418337 AATGTCCCTAAAATTACATGGAACC 57.582 36.000 0.00 0.00 33.04 3.62
6185 6878 3.213264 GGAACCGGTCCTGCGATA 58.787 61.111 8.04 0.00 43.98 2.92
6187 6880 0.600255 GGAACCGGTCCTGCGATATG 60.600 60.000 8.04 0.00 43.98 1.78
6188 6881 0.104304 GAACCGGTCCTGCGATATGT 59.896 55.000 8.04 0.00 0.00 2.29
6189 6882 0.104304 AACCGGTCCTGCGATATGTC 59.896 55.000 8.04 0.00 0.00 3.06
6190 6883 0.755698 ACCGGTCCTGCGATATGTCT 60.756 55.000 0.00 0.00 0.00 3.41
6192 6885 1.611977 CCGGTCCTGCGATATGTCTTA 59.388 52.381 0.00 0.00 0.00 2.10
6194 6887 2.662700 GGTCCTGCGATATGTCTTACG 58.337 52.381 0.00 0.00 0.00 3.18
6197 7010 4.082895 GGTCCTGCGATATGTCTTACGTAT 60.083 45.833 0.00 0.00 33.27 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.092882 GGGTTACGTCTCGCAGCAC 61.093 63.158 0.00 0.00 0.00 4.40
94 95 4.873259 GGTTTCTGGAGAAAAGCTAGCTAG 59.127 45.833 19.70 16.84 44.58 3.42
95 96 4.286032 TGGTTTCTGGAGAAAAGCTAGCTA 59.714 41.667 19.70 0.00 44.58 3.32
96 97 3.073062 TGGTTTCTGGAGAAAAGCTAGCT 59.927 43.478 12.68 12.68 44.58 3.32
97 98 3.412386 TGGTTTCTGGAGAAAAGCTAGC 58.588 45.455 6.62 6.62 44.58 3.42
131 132 2.223144 TCCGTGAAATGAAAAGTGAGCG 59.777 45.455 0.00 0.00 0.00 5.03
152 153 1.668294 CTCACCTCTGCTTCCACGT 59.332 57.895 0.00 0.00 0.00 4.49
154 155 0.390998 GAGCTCACCTCTGCTTCCAC 60.391 60.000 9.40 0.00 39.91 4.02
202 203 2.745308 CCATCCATCGACCAGGGCA 61.745 63.158 0.00 0.00 0.00 5.36
203 204 2.111878 CCATCCATCGACCAGGGC 59.888 66.667 0.00 0.00 0.00 5.19
207 208 2.186644 CGTGCCATCCATCGACCA 59.813 61.111 0.00 0.00 0.00 4.02
211 212 3.928769 CGTGCGTGCCATCCATCG 61.929 66.667 0.00 0.00 0.00 3.84
379 393 3.365969 GGTTAAAAATGAGGCACTGGTCG 60.366 47.826 0.00 0.00 41.55 4.79
385 399 3.500680 TCTCGTGGTTAAAAATGAGGCAC 59.499 43.478 7.63 0.00 31.54 5.01
388 402 6.743575 AGAATCTCGTGGTTAAAAATGAGG 57.256 37.500 7.63 0.00 31.54 3.86
453 472 6.017026 GCCACTGGCTATTACCTAATCTTTTC 60.017 42.308 13.28 0.00 46.69 2.29
485 505 2.396157 AAATCGGGAAAGCGACGGC 61.396 57.895 0.00 0.00 40.37 5.68
569 603 4.473520 CAGATCGGGCGGTTGGCT 62.474 66.667 0.00 0.00 42.94 4.75
575 609 4.907034 CGTCGTCAGATCGGGCGG 62.907 72.222 19.47 0.82 0.00 6.13
623 659 2.186903 CAACCGGGTGATCCTCCG 59.813 66.667 16.68 14.59 45.29 4.63
643 679 3.147595 CTCCAGCGGATCACGGGA 61.148 66.667 0.00 0.00 44.51 5.14
644 680 3.019003 AACTCCAGCGGATCACGGG 62.019 63.158 0.00 0.00 44.51 5.28
645 681 1.811266 CAACTCCAGCGGATCACGG 60.811 63.158 0.00 0.00 44.51 4.94
647 683 0.320771 ACACAACTCCAGCGGATCAC 60.321 55.000 0.00 0.00 0.00 3.06
649 685 0.798776 CAACACAACTCCAGCGGATC 59.201 55.000 0.00 0.00 0.00 3.36
711 765 1.406887 GCGTAGGAGGCTGGAATGAAA 60.407 52.381 0.00 0.00 0.00 2.69
732 786 1.583495 GGTTTCCGGAGAAAAGCGGG 61.583 60.000 3.34 0.00 43.48 6.13
734 788 0.948678 TTGGTTTCCGGAGAAAAGCG 59.051 50.000 3.34 0.00 43.48 4.68
780 837 0.179073 CATAGGGTCAGCTTCCACGG 60.179 60.000 6.98 0.00 0.00 4.94
790 860 0.620030 ACACTGCATGCATAGGGTCA 59.380 50.000 22.97 0.00 0.00 4.02
793 863 2.216046 CACTACACTGCATGCATAGGG 58.784 52.381 22.97 17.29 0.00 3.53
795 865 2.282407 TGCACTACACTGCATGCATAG 58.718 47.619 22.97 21.34 42.92 2.23
796 866 2.282407 CTGCACTACACTGCATGCATA 58.718 47.619 22.97 10.16 46.05 3.14
797 867 1.092348 CTGCACTACACTGCATGCAT 58.908 50.000 22.97 9.42 46.05 3.96
809 879 4.435436 CACCTCCGCGCTGCACTA 62.435 66.667 5.56 0.00 0.00 2.74
825 895 2.110213 GAACGGGACACAGCCACA 59.890 61.111 0.00 0.00 0.00 4.17
839 909 2.045340 CCATCCACCCACCGGAAC 60.045 66.667 9.46 0.00 35.77 3.62
845 915 2.436646 CTCGTGCCATCCACCCAC 60.437 66.667 0.00 0.00 41.53 4.61
846 916 3.716195 CCTCGTGCCATCCACCCA 61.716 66.667 0.00 0.00 41.53 4.51
848 918 3.918253 TTGCCTCGTGCCATCCACC 62.918 63.158 0.00 0.00 41.53 4.61
856 937 3.854459 GCTAGCGTTGCCTCGTGC 61.854 66.667 0.00 0.00 41.77 5.34
900 981 4.471908 TGGCTGTGGCGCGATGAT 62.472 61.111 12.10 0.00 39.81 2.45
929 1011 1.964891 CTCCCACAGCACAGCACAG 60.965 63.158 0.00 0.00 0.00 3.66
930 1012 2.111669 CTCCCACAGCACAGCACA 59.888 61.111 0.00 0.00 0.00 4.57
931 1013 2.670934 CCTCCCACAGCACAGCAC 60.671 66.667 0.00 0.00 0.00 4.40
932 1014 1.993701 TTTCCTCCCACAGCACAGCA 61.994 55.000 0.00 0.00 0.00 4.41
933 1015 1.228245 TTTCCTCCCACAGCACAGC 60.228 57.895 0.00 0.00 0.00 4.40
934 1016 0.607489 CCTTTCCTCCCACAGCACAG 60.607 60.000 0.00 0.00 0.00 3.66
935 1017 1.455849 CCTTTCCTCCCACAGCACA 59.544 57.895 0.00 0.00 0.00 4.57
936 1018 1.303643 CCCTTTCCTCCCACAGCAC 60.304 63.158 0.00 0.00 0.00 4.40
937 1019 1.463214 TCCCTTTCCTCCCACAGCA 60.463 57.895 0.00 0.00 0.00 4.41
938 1020 1.002011 GTCCCTTTCCTCCCACAGC 60.002 63.158 0.00 0.00 0.00 4.40
979 1062 1.304052 TGTGGCCTATGTGGGTTGC 60.304 57.895 3.32 0.00 36.00 4.17
982 1065 1.378762 GTGTGTGGCCTATGTGGGT 59.621 57.895 3.32 0.00 36.00 4.51
989 1072 3.529341 CTGGTGCGTGTGTGGCCTA 62.529 63.158 3.32 0.00 0.00 3.93
1046 1133 2.283966 CGAGGTGGAGGTGGAGGT 60.284 66.667 0.00 0.00 0.00 3.85
1067 1154 4.157958 GACGACGACGACGGAGGG 62.158 72.222 22.36 0.27 44.46 4.30
1068 1155 4.157958 GGACGACGACGACGGAGG 62.158 72.222 22.36 2.77 44.46 4.30
1069 1156 3.081159 GAGGACGACGACGACGGAG 62.081 68.421 22.36 7.43 44.46 4.63
1070 1157 3.114616 GAGGACGACGACGACGGA 61.115 66.667 22.36 0.00 44.46 4.69
1071 1158 2.628697 GATGAGGACGACGACGACGG 62.629 65.000 22.36 6.21 44.46 4.79
1072 1159 1.296722 GATGAGGACGACGACGACG 60.297 63.158 17.60 17.60 42.66 5.12
1073 1160 1.062206 GGATGAGGACGACGACGAC 59.938 63.158 15.32 7.84 42.66 4.34
1074 1161 1.078637 AGGATGAGGACGACGACGA 60.079 57.895 15.32 0.00 42.66 4.20
1075 1162 1.352404 GAGGATGAGGACGACGACG 59.648 63.158 5.58 5.58 45.75 5.12
1076 1163 0.748729 AGGAGGATGAGGACGACGAC 60.749 60.000 0.00 0.00 0.00 4.34
1077 1164 0.464013 GAGGAGGATGAGGACGACGA 60.464 60.000 0.00 0.00 0.00 4.20
1078 1165 1.448922 GGAGGAGGATGAGGACGACG 61.449 65.000 0.00 0.00 0.00 5.12
1079 1166 0.106419 AGGAGGAGGATGAGGACGAC 60.106 60.000 0.00 0.00 0.00 4.34
1080 1167 0.183971 GAGGAGGAGGATGAGGACGA 59.816 60.000 0.00 0.00 0.00 4.20
1081 1168 0.184933 AGAGGAGGAGGATGAGGACG 59.815 60.000 0.00 0.00 0.00 4.79
1082 1169 1.480498 GGAGAGGAGGAGGATGAGGAC 60.480 61.905 0.00 0.00 0.00 3.85
1148 1235 0.866906 CTGCGCGCATGTTAAATGGG 60.867 55.000 36.48 15.09 35.41 4.00
1172 1259 0.458669 TAATCCCGAGGACAAGCGTC 59.541 55.000 0.00 0.00 41.80 5.19
1173 1260 0.899720 TTAATCCCGAGGACAAGCGT 59.100 50.000 0.00 0.00 32.98 5.07
1177 1264 4.360951 AACAGTTTAATCCCGAGGACAA 57.639 40.909 0.00 0.00 32.98 3.18
1187 1274 7.396540 ACCATGGATGAGAAACAGTTTAATC 57.603 36.000 21.47 3.32 0.00 1.75
1190 1277 8.877864 AATAACCATGGATGAGAAACAGTTTA 57.122 30.769 21.47 1.69 0.00 2.01
1193 1280 7.781324 AAAATAACCATGGATGAGAAACAGT 57.219 32.000 21.47 0.00 0.00 3.55
1194 1281 7.063780 GCAAAAATAACCATGGATGAGAAACAG 59.936 37.037 21.47 0.69 0.00 3.16
1204 1291 4.439426 CGATTCGGCAAAAATAACCATGGA 60.439 41.667 21.47 0.00 0.00 3.41
1206 1293 4.667262 TCGATTCGGCAAAAATAACCATG 58.333 39.130 6.18 0.00 0.00 3.66
1213 1300 4.963276 TCTGATTCGATTCGGCAAAAAT 57.037 36.364 10.63 0.00 0.00 1.82
1216 1303 2.613595 CCATCTGATTCGATTCGGCAAA 59.386 45.455 10.63 0.00 0.00 3.68
1220 1307 3.055591 CAGTCCATCTGATTCGATTCGG 58.944 50.000 6.18 9.42 46.27 4.30
1226 1313 1.137675 TGCTCCAGTCCATCTGATTCG 59.862 52.381 0.00 0.00 46.27 3.34
1238 1325 0.396974 CTCCTCCTAGCTGCTCCAGT 60.397 60.000 4.91 0.00 33.43 4.00
1250 1337 1.002792 CAGGCCTTCTCCTCCTCCT 59.997 63.158 0.00 0.00 33.25 3.69
1269 1356 0.687757 TCCCTGAGAATCTCCCGGTG 60.688 60.000 7.91 3.53 34.92 4.94
1272 1359 0.752009 TCGTCCCTGAGAATCTCCCG 60.752 60.000 7.91 2.93 34.92 5.14
1301 1388 1.448717 GCCGAGTTCCTTGAGCCTC 60.449 63.158 0.00 0.00 0.00 4.70
1340 1427 2.281761 GGCGGCATAGTGGATGGG 60.282 66.667 3.07 0.00 35.91 4.00
1389 1476 2.295253 AAAGCGGATCAGGAACGTAG 57.705 50.000 0.00 0.00 0.00 3.51
1390 1477 2.613691 GAAAAGCGGATCAGGAACGTA 58.386 47.619 0.00 0.00 0.00 3.57
1391 1478 1.439679 GAAAAGCGGATCAGGAACGT 58.560 50.000 0.00 0.00 0.00 3.99
1392 1479 0.727398 GGAAAAGCGGATCAGGAACG 59.273 55.000 0.00 0.00 0.00 3.95
1419 1506 4.996122 GTGGATCAAGGAGCTCTGAATATG 59.004 45.833 14.64 4.39 0.00 1.78
1452 1539 5.419542 TGAAACAAGATTCTCGTATCTGGG 58.580 41.667 0.00 0.00 35.12 4.45
1474 1561 6.849502 AGTCAAAGTGCAGTGATAATGAATG 58.150 36.000 0.00 0.00 0.00 2.67
1478 1565 4.389992 ACGAGTCAAAGTGCAGTGATAATG 59.610 41.667 0.00 0.00 0.00 1.90
1484 1571 2.221055 GGTAACGAGTCAAAGTGCAGTG 59.779 50.000 0.00 0.00 0.00 3.66
1493 1580 2.599408 AGGAGGAGGTAACGAGTCAA 57.401 50.000 0.00 0.00 46.39 3.18
1504 1615 7.415086 TCTATAGGAGCTTAATTAGGAGGAGG 58.585 42.308 0.00 0.00 0.00 4.30
1542 1653 1.064389 GTAGCCAAGGAAGCCCAGATT 60.064 52.381 0.00 0.00 33.88 2.40
1591 1702 3.078097 TGCGTGGTACTGCACAATTATT 58.922 40.909 4.28 0.00 35.90 1.40
1594 1705 1.001815 GTTGCGTGGTACTGCACAATT 60.002 47.619 7.34 0.00 41.57 2.32
1595 1706 0.591170 GTTGCGTGGTACTGCACAAT 59.409 50.000 7.34 0.00 41.57 2.71
1597 1708 1.153349 TGTTGCGTGGTACTGCACA 60.153 52.632 7.34 6.86 41.57 4.57
1598 1709 1.157870 ACTGTTGCGTGGTACTGCAC 61.158 55.000 7.34 0.54 41.57 4.57
1599 1710 1.145156 ACTGTTGCGTGGTACTGCA 59.855 52.632 4.28 4.28 39.81 4.41
1601 1712 1.726791 GATCACTGTTGCGTGGTACTG 59.273 52.381 0.00 0.00 35.63 2.74
1602 1713 1.343142 TGATCACTGTTGCGTGGTACT 59.657 47.619 0.00 0.00 35.63 2.73
1603 1714 1.726791 CTGATCACTGTTGCGTGGTAC 59.273 52.381 0.00 0.00 35.63 3.34
1604 1715 1.939381 GCTGATCACTGTTGCGTGGTA 60.939 52.381 0.00 0.00 35.63 3.25
1605 1716 1.230635 GCTGATCACTGTTGCGTGGT 61.231 55.000 0.00 0.00 35.63 4.16
1606 1717 0.952497 AGCTGATCACTGTTGCGTGG 60.952 55.000 0.00 0.00 35.63 4.94
1607 1718 0.165295 CAGCTGATCACTGTTGCGTG 59.835 55.000 8.42 4.11 36.25 5.34
1639 1750 5.030295 CGTGTTGCTTAGAAAATGCCATAG 58.970 41.667 0.00 0.00 0.00 2.23
1644 1755 1.985684 GCCGTGTTGCTTAGAAAATGC 59.014 47.619 0.00 0.00 0.00 3.56
1656 1767 1.165907 TGCCAAGAGAAGCCGTGTTG 61.166 55.000 0.00 0.00 0.00 3.33
1663 1774 2.075338 CAGTCTTCTGCCAAGAGAAGC 58.925 52.381 6.65 3.34 45.93 3.86
1672 1783 1.598962 TGCTGCACAGTCTTCTGCC 60.599 57.895 0.00 0.00 44.77 4.85
1689 1800 3.631144 CACAGTTTATGGCTGTTGTGTG 58.369 45.455 0.00 0.00 43.87 3.82
1698 1809 3.727780 GCAATTTGCACAGTTTATGGC 57.272 42.857 16.35 0.00 44.26 4.40
1713 1824 3.553508 GCCAAGACAAGTCATGTGCAATT 60.554 43.478 2.72 0.00 44.12 2.32
1714 1825 2.029649 GCCAAGACAAGTCATGTGCAAT 60.030 45.455 2.72 0.00 44.12 3.56
1720 1831 3.278367 CTTGTGCCAAGACAAGTCATG 57.722 47.619 8.72 0.64 45.27 3.07
1728 1839 3.389741 CGCAATCTTGTGCCAAGAC 57.610 52.632 16.66 6.80 41.73 3.01
1757 1868 4.023536 CCAATACGCACAGTTTTACCACTT 60.024 41.667 0.00 0.00 0.00 3.16
1758 1869 3.500680 CCAATACGCACAGTTTTACCACT 59.499 43.478 0.00 0.00 0.00 4.00
1760 1871 3.741249 TCCAATACGCACAGTTTTACCA 58.259 40.909 0.00 0.00 0.00 3.25
1764 1875 5.645929 TGACATATCCAATACGCACAGTTTT 59.354 36.000 0.00 0.00 0.00 2.43
1782 1893 9.453572 AGTCATCTTGCTTAAGAAAATGACATA 57.546 29.630 29.46 10.69 38.14 2.29
1784 1895 7.750229 AGTCATCTTGCTTAAGAAAATGACA 57.250 32.000 29.46 11.19 38.14 3.58
1795 1906 5.180117 GTGCAAAGAGAAGTCATCTTGCTTA 59.820 40.000 6.21 0.00 38.96 3.09
1815 1928 3.640407 GAGGTGGCCTCTGGTGCA 61.640 66.667 3.32 0.00 46.41 4.57
1825 1938 5.047660 TGGTATTTTTGTTGTATGAGGTGGC 60.048 40.000 0.00 0.00 0.00 5.01
1829 1942 7.928706 TGGTTTTGGTATTTTTGTTGTATGAGG 59.071 33.333 0.00 0.00 0.00 3.86
1844 1957 9.849166 CGTTATTAATTGAACTGGTTTTGGTAT 57.151 29.630 0.00 0.00 0.00 2.73
1854 1967 9.834628 ACATAACCAACGTTATTAATTGAACTG 57.165 29.630 0.00 0.00 41.47 3.16
1889 2002 1.067915 CACCCAACCAATTACTTGCCG 60.068 52.381 0.00 0.00 0.00 5.69
1890 2003 1.967779 ACACCCAACCAATTACTTGCC 59.032 47.619 0.00 0.00 0.00 4.52
1895 2008 2.414957 GCGCTAACACCCAACCAATTAC 60.415 50.000 0.00 0.00 0.00 1.89
1896 2009 1.813786 GCGCTAACACCCAACCAATTA 59.186 47.619 0.00 0.00 0.00 1.40
1901 2014 2.978018 GCTGCGCTAACACCCAACC 61.978 63.158 9.73 0.00 0.00 3.77
1905 2018 1.305219 TGATTGCTGCGCTAACACCC 61.305 55.000 9.73 0.00 0.00 4.61
1912 2025 0.675633 AAGGTTTTGATTGCTGCGCT 59.324 45.000 9.73 0.00 0.00 5.92
1944 2057 3.854286 ACAAGACGATTGAAACGTGAC 57.146 42.857 4.95 0.00 43.97 3.67
1958 2071 1.390463 GGAAGCACGATCGAACAAGAC 59.610 52.381 24.34 6.53 0.00 3.01
1960 2073 0.721718 GGGAAGCACGATCGAACAAG 59.278 55.000 24.34 6.99 0.00 3.16
1979 2092 9.935241 ATGTACAAGATTATGTAAGATGGCTAG 57.065 33.333 0.00 0.00 37.52 3.42
1980 2093 9.710900 CATGTACAAGATTATGTAAGATGGCTA 57.289 33.333 0.00 0.00 37.52 3.93
1981 2094 7.173907 GCATGTACAAGATTATGTAAGATGGCT 59.826 37.037 0.00 0.00 37.52 4.75
1982 2095 7.301054 GCATGTACAAGATTATGTAAGATGGC 58.699 38.462 0.00 0.00 37.52 4.40
1984 2097 7.663081 AGGGCATGTACAAGATTATGTAAGATG 59.337 37.037 0.00 0.00 37.52 2.90
1985 2098 7.663081 CAGGGCATGTACAAGATTATGTAAGAT 59.337 37.037 0.00 0.00 37.52 2.40
1988 2101 6.658849 ACAGGGCATGTACAAGATTATGTAA 58.341 36.000 1.47 0.00 41.60 2.41
1989 2102 6.247229 ACAGGGCATGTACAAGATTATGTA 57.753 37.500 1.47 0.00 41.60 2.29
1990 2103 5.116084 ACAGGGCATGTACAAGATTATGT 57.884 39.130 1.47 0.00 41.60 2.29
1991 2104 6.455360 AAACAGGGCATGTACAAGATTATG 57.545 37.500 4.75 0.00 43.00 1.90
1992 2105 7.480760 AAAAACAGGGCATGTACAAGATTAT 57.519 32.000 4.75 0.00 43.00 1.28
1993 2106 6.909550 AAAAACAGGGCATGTACAAGATTA 57.090 33.333 4.75 0.00 43.00 1.75
2016 2131 3.181329 TGCTTCAGGTTATCTCTCCCAA 58.819 45.455 0.00 0.00 0.00 4.12
2017 2132 2.832838 TGCTTCAGGTTATCTCTCCCA 58.167 47.619 0.00 0.00 0.00 4.37
2020 2135 5.469421 CCATCATTGCTTCAGGTTATCTCTC 59.531 44.000 0.00 0.00 0.00 3.20
2021 2136 5.104193 ACCATCATTGCTTCAGGTTATCTCT 60.104 40.000 0.00 0.00 0.00 3.10
2040 2155 6.849588 AAAGTGAAAATTGAGCAAACCATC 57.150 33.333 0.00 0.00 0.00 3.51
2042 2157 6.878389 AGAAAAAGTGAAAATTGAGCAAACCA 59.122 30.769 0.00 0.00 0.00 3.67
2045 2160 7.981225 AGCTAGAAAAAGTGAAAATTGAGCAAA 59.019 29.630 0.00 0.00 0.00 3.68
2061 2176 7.940850 ACAGCAAAGTAATCAAGCTAGAAAAA 58.059 30.769 0.00 0.00 33.59 1.94
2066 2181 6.763135 TGGATACAGCAAAGTAATCAAGCTAG 59.237 38.462 0.00 0.00 46.17 3.42
2085 2200 7.446625 AGACCAGAAATTGCTCATATTGGATAC 59.553 37.037 0.00 0.00 0.00 2.24
2093 2208 4.842531 TGGAGACCAGAAATTGCTCATA 57.157 40.909 0.00 0.00 0.00 2.15
2121 2236 0.901124 AGCAAGAGTCTCGCTCCAAT 59.099 50.000 0.00 0.00 45.21 3.16
2122 2237 0.037882 CAGCAAGAGTCTCGCTCCAA 60.038 55.000 1.55 0.00 45.21 3.53
2123 2238 1.588597 CAGCAAGAGTCTCGCTCCA 59.411 57.895 1.55 0.00 45.21 3.86
2124 2239 1.809209 GCAGCAAGAGTCTCGCTCC 60.809 63.158 1.55 0.00 45.21 4.70
2125 2240 0.459934 ATGCAGCAAGAGTCTCGCTC 60.460 55.000 1.55 0.00 44.45 5.03
2126 2241 0.459934 GATGCAGCAAGAGTCTCGCT 60.460 55.000 0.00 0.00 36.10 4.93
2127 2242 0.459934 AGATGCAGCAAGAGTCTCGC 60.460 55.000 4.07 0.00 0.00 5.03
2128 2243 2.007360 AAGATGCAGCAAGAGTCTCG 57.993 50.000 4.07 0.00 0.00 4.04
2129 2244 3.501445 ACAAAAGATGCAGCAAGAGTCTC 59.499 43.478 4.07 0.00 0.00 3.36
2130 2245 3.484407 ACAAAAGATGCAGCAAGAGTCT 58.516 40.909 4.07 0.00 0.00 3.24
2131 2246 3.501445 AGACAAAAGATGCAGCAAGAGTC 59.499 43.478 4.07 7.11 0.00 3.36
2132 2247 3.484407 AGACAAAAGATGCAGCAAGAGT 58.516 40.909 4.07 0.00 0.00 3.24
2133 2248 4.500603 AAGACAAAAGATGCAGCAAGAG 57.499 40.909 4.07 0.00 0.00 2.85
2134 2249 5.049198 CAGTAAGACAAAAGATGCAGCAAGA 60.049 40.000 4.07 0.00 0.00 3.02
2135 2250 5.152097 CAGTAAGACAAAAGATGCAGCAAG 58.848 41.667 4.07 0.00 0.00 4.01
2136 2251 4.580167 ACAGTAAGACAAAAGATGCAGCAA 59.420 37.500 4.07 0.00 0.00 3.91
2142 2257 5.687285 GTGCCAAACAGTAAGACAAAAGATG 59.313 40.000 0.00 0.00 0.00 2.90
2155 2270 1.202927 ACTGCTATGGTGCCAAACAGT 60.203 47.619 14.39 14.39 34.70 3.55
2201 2316 1.710013 ATCAACGCGGTGTTAGAGTG 58.290 50.000 25.58 0.00 39.29 3.51
2202 2317 2.066262 CAATCAACGCGGTGTTAGAGT 58.934 47.619 25.58 0.00 39.29 3.24
2203 2318 1.201921 GCAATCAACGCGGTGTTAGAG 60.202 52.381 25.58 11.79 39.29 2.43
2204 2319 0.793861 GCAATCAACGCGGTGTTAGA 59.206 50.000 25.58 4.55 39.29 2.10
2277 2392 1.018226 CAGTGGCTCTGAAGGAAGCG 61.018 60.000 10.99 0.00 46.27 4.68
2325 2440 3.484524 GACTTACGTCGCAAGTCCA 57.515 52.632 22.52 0.00 43.98 4.02
2332 2447 0.856641 TGCAAACAGACTTACGTCGC 59.143 50.000 0.00 0.00 44.93 5.19
2352 2467 2.618241 AGCGTGAGAAAATGACTGCAAA 59.382 40.909 0.00 0.00 0.00 3.68
2377 2492 6.601613 TGAACATGAACTGGTCAGTTAAAGTT 59.398 34.615 16.94 16.94 46.74 2.66
2387 2502 6.375455 ACCTTCATAATGAACATGAACTGGTC 59.625 38.462 0.00 0.00 42.34 4.02
2388 2503 6.151648 CACCTTCATAATGAACATGAACTGGT 59.848 38.462 0.00 4.16 39.60 4.00
2390 2505 6.405065 CCCACCTTCATAATGAACATGAACTG 60.405 42.308 0.00 0.00 37.46 3.16
2392 2507 5.418840 ACCCACCTTCATAATGAACATGAAC 59.581 40.000 0.00 0.00 37.46 3.18
2395 2510 4.098349 CCACCCACCTTCATAATGAACATG 59.902 45.833 0.00 0.00 32.21 3.21
2396 2511 4.017591 TCCACCCACCTTCATAATGAACAT 60.018 41.667 0.00 0.00 32.21 2.71
2397 2512 3.332187 TCCACCCACCTTCATAATGAACA 59.668 43.478 0.00 0.00 32.21 3.18
2398 2513 3.963129 TCCACCCACCTTCATAATGAAC 58.037 45.455 0.00 0.00 32.21 3.18
2400 2515 3.785325 TGATCCACCCACCTTCATAATGA 59.215 43.478 0.00 0.00 0.00 2.57
2402 2517 4.879295 TTGATCCACCCACCTTCATAAT 57.121 40.909 0.00 0.00 0.00 1.28
2405 2520 3.368248 CATTTGATCCACCCACCTTCAT 58.632 45.455 0.00 0.00 0.00 2.57
2407 2522 2.102578 CCATTTGATCCACCCACCTTC 58.897 52.381 0.00 0.00 0.00 3.46
2417 2532 7.362056 CGACCATGAATATTACCCATTTGATCC 60.362 40.741 0.00 0.00 0.00 3.36
2432 2547 4.509616 ACGGTTCAAATCGACCATGAATA 58.490 39.130 11.19 0.00 35.70 1.75
2450 2565 3.403038 CTTCTCTGTTGAATTGGACGGT 58.597 45.455 0.00 0.00 0.00 4.83
2453 2568 3.416156 AGCCTTCTCTGTTGAATTGGAC 58.584 45.455 0.00 0.00 0.00 4.02
2462 2577 6.248433 TCCAATCAATAAAGCCTTCTCTGTT 58.752 36.000 0.00 0.00 0.00 3.16
2468 2583 6.319658 TGTGAGATCCAATCAATAAAGCCTTC 59.680 38.462 0.00 0.00 0.00 3.46
2475 2590 6.661777 TCACCATGTGAGATCCAATCAATAA 58.338 36.000 0.00 0.00 37.67 1.40
2489 2604 5.745312 AGTTGATAGTTCTCACCATGTGA 57.255 39.130 0.00 0.00 40.50 3.58
2492 2607 7.984050 AGTTGATAGTTGATAGTTCTCACCATG 59.016 37.037 0.00 0.00 0.00 3.66
2501 2616 9.220767 GAAACAAGGAGTTGATAGTTGATAGTT 57.779 33.333 0.00 0.00 41.19 2.24
2502 2617 8.375506 TGAAACAAGGAGTTGATAGTTGATAGT 58.624 33.333 0.00 0.00 41.19 2.12
2503 2618 8.777865 TGAAACAAGGAGTTGATAGTTGATAG 57.222 34.615 0.00 0.00 41.19 2.08
2504 2619 9.166173 CATGAAACAAGGAGTTGATAGTTGATA 57.834 33.333 0.00 0.00 41.19 2.15
2505 2620 7.667219 ACATGAAACAAGGAGTTGATAGTTGAT 59.333 33.333 0.00 0.00 41.19 2.57
2506 2621 6.998074 ACATGAAACAAGGAGTTGATAGTTGA 59.002 34.615 0.00 0.00 41.19 3.18
2507 2622 7.206981 ACATGAAACAAGGAGTTGATAGTTG 57.793 36.000 0.00 0.00 41.19 3.16
2531 2646 9.730420 GCTCTTTGTTAACTAAAAGAATCACAA 57.270 29.630 17.17 0.00 40.80 3.33
2547 2662 6.659745 TTAGTCAGTGGTAGCTCTTTGTTA 57.340 37.500 0.00 0.00 0.00 2.41
2548 2663 5.546621 TTAGTCAGTGGTAGCTCTTTGTT 57.453 39.130 0.00 0.00 0.00 2.83
2560 2677 8.607459 CAAATATAAGACAGCTTTAGTCAGTGG 58.393 37.037 5.57 0.00 38.46 4.00
2853 2971 0.723414 CGTGCACCTGTGAGCAATAG 59.277 55.000 12.15 0.00 43.20 1.73
2920 3038 8.286800 TGAAATTAAATACACAAGACAAGGACG 58.713 33.333 0.00 0.00 0.00 4.79
2949 3067 8.049117 ACAATCAATATTAAAGCACTCTGAGGA 58.951 33.333 9.85 0.00 0.00 3.71
2951 3069 9.713740 GAACAATCAATATTAAAGCACTCTGAG 57.286 33.333 2.45 2.45 0.00 3.35
2970 3088 4.757149 ACTGGAAGCAACTAGTGAACAATC 59.243 41.667 0.00 0.00 37.60 2.67
3053 3207 4.440112 GGCAACAGACACTGCTAAAAGTTT 60.440 41.667 0.00 0.00 38.65 2.66
3071 3225 6.317391 AGTTAGATCTGAAGCAATTAGGCAAC 59.683 38.462 5.18 0.00 35.83 4.17
3083 3237 4.670221 GCACCGCAAAAGTTAGATCTGAAG 60.670 45.833 5.18 0.00 0.00 3.02
3124 3279 0.607489 ACAATGGCAGCAGACCTCAC 60.607 55.000 0.00 0.00 0.00 3.51
3138 3293 9.113838 AGCTTGTCTGGTTATCTTATTACAATG 57.886 33.333 0.00 0.00 0.00 2.82
3142 3297 9.595823 TTGTAGCTTGTCTGGTTATCTTATTAC 57.404 33.333 0.00 0.00 0.00 1.89
3147 3302 6.769512 TCTTTGTAGCTTGTCTGGTTATCTT 58.230 36.000 0.00 0.00 0.00 2.40
3304 3461 5.873179 TCCTGAATAACAAAACGGCTAAG 57.127 39.130 0.00 0.00 0.00 2.18
3305 3462 6.431543 TGAATCCTGAATAACAAAACGGCTAA 59.568 34.615 0.00 0.00 0.00 3.09
3333 3491 5.822519 TCAAACCACATGACATCTAATAGGC 59.177 40.000 0.00 0.00 0.00 3.93
3352 3510 4.581824 AGCATATGTCATGATGGGTCAAAC 59.418 41.667 0.00 0.00 38.01 2.93
3407 3640 9.485206 TCATAGTGACATATTCAGACATTCATG 57.515 33.333 0.00 0.00 33.71 3.07
3593 3826 1.821216 AGTCCGGTTGGTTTATGCAG 58.179 50.000 0.00 0.00 36.30 4.41
3698 3932 0.034896 GTGGCCTCGAAGGAGTTCAA 59.965 55.000 3.32 0.00 37.67 2.69
3715 3949 1.575576 GACCAAGAGCAGCAGCAGTG 61.576 60.000 3.17 0.00 45.49 3.66
3717 3951 1.299562 CTGACCAAGAGCAGCAGCAG 61.300 60.000 3.17 0.00 45.49 4.24
3736 3970 1.218316 CTCCGGGCTGTACTTGACC 59.782 63.158 0.00 0.00 0.00 4.02
3760 3994 2.533266 ATACCTCAACATAGCTGCCG 57.467 50.000 0.00 0.00 0.00 5.69
3763 3997 8.562892 CAAATCCTTTATACCTCAACATAGCTG 58.437 37.037 0.00 0.00 0.00 4.24
3832 4069 6.755141 GCCGTACATAAACAGAGATTGTAAGA 59.245 38.462 0.00 0.00 39.73 2.10
3839 4076 3.451178 ACCTGCCGTACATAAACAGAGAT 59.549 43.478 0.00 0.00 0.00 2.75
3854 4091 1.949257 GTTCCAAGTGAACCTGCCG 59.051 57.895 0.00 0.00 46.35 5.69
3898 4143 1.416243 TTACGACGCCAAGGGGATAT 58.584 50.000 10.39 0.00 35.59 1.63
3910 4155 0.921347 CTGCGATCCCTTTTACGACG 59.079 55.000 0.00 0.00 0.00 5.12
3922 4167 2.635229 ATCGTGTCTGCCCTGCGATC 62.635 60.000 0.00 0.00 37.71 3.69
3937 4182 4.207891 ACTAGAATGCACCTTCAATCGT 57.792 40.909 0.00 0.00 0.00 3.73
3955 4200 5.121768 GCGGAACAAAAATAGCAGAGAACTA 59.878 40.000 0.00 0.00 0.00 2.24
3976 4221 5.408604 AGTGTTGATGTTTACTTTCTAGCGG 59.591 40.000 0.00 0.00 0.00 5.52
4031 4276 7.535139 TGCTACTTGGTCATATTTTAGTTTGC 58.465 34.615 0.00 0.00 0.00 3.68
4058 4303 5.923733 AGCTAGTCTTTACATAGTGTGCT 57.076 39.130 0.00 0.00 0.00 4.40
4068 4321 7.749539 TTGTTTTGCAAAAGCTAGTCTTTAC 57.250 32.000 24.46 9.73 43.84 2.01
4076 4329 5.275067 ACCTGATTGTTTTGCAAAAGCTA 57.725 34.783 24.46 15.53 40.91 3.32
4090 4343 7.099266 TGGTATTCAAATAGCAACCTGATTG 57.901 36.000 11.19 0.00 43.89 2.67
4116 4369 5.747197 GTGCTGGCTGATGATTTTGAAATAG 59.253 40.000 0.00 0.00 0.00 1.73
4137 4390 1.326548 CTCGTTAATAACAGGCGGTGC 59.673 52.381 3.91 0.00 0.00 5.01
4138 4391 2.613691 ACTCGTTAATAACAGGCGGTG 58.386 47.619 3.91 0.00 0.00 4.94
4150 4409 5.062934 CCGCTGATGATTGTTTACTCGTTAA 59.937 40.000 0.00 0.00 0.00 2.01
4152 4411 3.370978 CCGCTGATGATTGTTTACTCGTT 59.629 43.478 0.00 0.00 0.00 3.85
4154 4413 2.930040 ACCGCTGATGATTGTTTACTCG 59.070 45.455 0.00 0.00 0.00 4.18
4155 4414 4.184629 AGACCGCTGATGATTGTTTACTC 58.815 43.478 0.00 0.00 0.00 2.59
4157 4416 4.946784 AAGACCGCTGATGATTGTTTAC 57.053 40.909 0.00 0.00 0.00 2.01
4180 4721 4.000988 GAGGACTGCTGACCGATTAAAAA 58.999 43.478 6.46 0.00 33.32 1.94
4188 4729 0.034059 AACAAGAGGACTGCTGACCG 59.966 55.000 6.46 0.00 33.32 4.79
4197 4738 4.836125 TCATTTGCTCAAACAAGAGGAC 57.164 40.909 0.00 0.00 35.61 3.85
4216 4757 1.081094 CATGTTGACTGCTCGCATCA 58.919 50.000 0.00 0.00 0.00 3.07
4217 4758 1.362768 TCATGTTGACTGCTCGCATC 58.637 50.000 0.00 0.00 0.00 3.91
4221 4762 1.150827 TGCTTCATGTTGACTGCTCG 58.849 50.000 0.00 0.00 30.62 5.03
4267 4812 2.202570 ACACGCTCATACCGTCGC 60.203 61.111 0.00 0.00 36.69 5.19
4279 4824 9.140286 TCTTAATCTGATAAATATAGCACACGC 57.860 33.333 0.00 0.00 38.99 5.34
4322 4867 2.645163 GATACTCGTGTCATCTCAGCG 58.355 52.381 0.00 0.00 0.00 5.18
4324 4869 2.603412 GGCGATACTCGTGTCATCTCAG 60.603 54.545 0.00 0.00 42.81 3.35
4325 4870 1.333931 GGCGATACTCGTGTCATCTCA 59.666 52.381 0.00 0.00 42.81 3.27
4326 4871 1.333931 TGGCGATACTCGTGTCATCTC 59.666 52.381 0.00 0.00 42.81 2.75
4327 4872 1.389555 TGGCGATACTCGTGTCATCT 58.610 50.000 0.00 0.00 42.81 2.90
4329 4874 1.681264 TGATGGCGATACTCGTGTCAT 59.319 47.619 0.00 0.00 42.81 3.06
4330 4875 1.099689 TGATGGCGATACTCGTGTCA 58.900 50.000 0.00 0.00 42.81 3.58
4361 4906 8.773033 AGGGCTGAATAATTCTTATCAAACAT 57.227 30.769 0.00 0.00 0.00 2.71
4411 4964 3.017442 TGTAGGAATCTGAGACTGGTCG 58.983 50.000 0.00 0.00 34.09 4.79
4413 4966 2.763448 GCTGTAGGAATCTGAGACTGGT 59.237 50.000 0.00 0.00 0.00 4.00
4440 5026 1.632018 TAGGGGTCGATTTGGGCCAG 61.632 60.000 6.23 0.00 0.00 4.85
4470 5056 4.853743 GCATTTCGAACTTAGGAAGCAAAG 59.146 41.667 0.00 0.00 0.00 2.77
4486 5072 6.146021 ACAGCCAAAAATTTCTAAGCATTTCG 59.854 34.615 0.00 0.00 0.00 3.46
4642 5228 1.064906 TCCTCGTCGTAGGTCAGGAAT 60.065 52.381 9.58 0.00 37.91 3.01
4750 5336 1.639635 ATGAGCTTACCTGGCCTGGG 61.640 60.000 30.19 21.31 0.00 4.45
4766 5352 0.764271 TGACAAGCACCTGGTGATGA 59.236 50.000 30.23 10.09 35.23 2.92
4767 5353 1.830279 ATGACAAGCACCTGGTGATG 58.170 50.000 30.23 26.18 35.23 3.07
4768 5354 2.165167 CAATGACAAGCACCTGGTGAT 58.835 47.619 30.23 22.25 35.23 3.06
4770 5356 1.267806 GACAATGACAAGCACCTGGTG 59.732 52.381 22.46 22.46 36.51 4.17
4771 5357 1.143684 AGACAATGACAAGCACCTGGT 59.856 47.619 0.00 0.00 0.00 4.00
4772 5358 1.901591 AGACAATGACAAGCACCTGG 58.098 50.000 0.00 0.00 0.00 4.45
4774 5360 4.256920 GACATAGACAATGACAAGCACCT 58.743 43.478 0.00 0.00 39.07 4.00
4775 5361 3.375299 GGACATAGACAATGACAAGCACC 59.625 47.826 0.00 0.00 39.07 5.01
4776 5362 4.002982 TGGACATAGACAATGACAAGCAC 58.997 43.478 0.00 0.00 39.07 4.40
4777 5363 4.256110 CTGGACATAGACAATGACAAGCA 58.744 43.478 0.00 0.00 39.07 3.91
4778 5364 3.064545 GCTGGACATAGACAATGACAAGC 59.935 47.826 2.03 2.03 45.67 4.01
4781 5367 3.979101 TGCTGGACATAGACAATGACA 57.021 42.857 0.00 0.00 39.07 3.58
4782 5368 3.492383 CGATGCTGGACATAGACAATGAC 59.508 47.826 0.00 0.00 39.84 3.06
4783 5369 3.384467 TCGATGCTGGACATAGACAATGA 59.616 43.478 0.00 0.00 39.84 2.57
4784 5370 3.721035 TCGATGCTGGACATAGACAATG 58.279 45.455 0.00 0.00 39.84 2.82
4785 5371 4.564041 GATCGATGCTGGACATAGACAAT 58.436 43.478 0.54 0.00 42.30 2.71
4791 5397 2.226674 GACTCGATCGATGCTGGACATA 59.773 50.000 19.78 0.00 39.84 2.29
4792 5398 1.000827 GACTCGATCGATGCTGGACAT 60.001 52.381 19.78 0.00 43.54 3.06
4830 5442 0.105964 TGAAGTTCACCTGGTGACCG 59.894 55.000 28.35 1.92 42.60 4.79
4831 5443 1.594331 GTGAAGTTCACCTGGTGACC 58.406 55.000 28.35 22.02 42.60 4.02
4832 5444 1.217882 CGTGAAGTTCACCTGGTGAC 58.782 55.000 28.35 21.48 44.20 3.67
4845 5457 1.410737 CGCGTATGTCCACCGTGAAG 61.411 60.000 0.00 0.00 34.22 3.02
4970 5582 2.039405 GCCTCAGCAGCAGTTCAGG 61.039 63.158 0.00 0.00 39.53 3.86
4971 5583 1.302271 TGCCTCAGCAGCAGTTCAG 60.302 57.895 0.00 0.00 46.52 3.02
4972 5584 2.831043 TGCCTCAGCAGCAGTTCA 59.169 55.556 0.00 0.00 46.52 3.18
4981 5593 2.486966 GCCGTCAAATGCCTCAGC 59.513 61.111 0.00 0.00 40.48 4.26
4982 5594 2.753966 CCGCCGTCAAATGCCTCAG 61.754 63.158 0.00 0.00 0.00 3.35
4983 5595 2.745884 CCGCCGTCAAATGCCTCA 60.746 61.111 0.00 0.00 0.00 3.86
4984 5596 4.179579 GCCGCCGTCAAATGCCTC 62.180 66.667 0.00 0.00 0.00 4.70
4988 5600 4.178214 ATGCGCCGCCGTCAAATG 62.178 61.111 6.63 0.00 36.67 2.32
4989 5601 4.178214 CATGCGCCGCCGTCAAAT 62.178 61.111 6.63 0.00 36.67 2.32
4997 5609 3.518293 GATTCAGCTCATGCGCCGC 62.518 63.158 4.18 0.00 45.42 6.53
4998 5610 1.504647 ATGATTCAGCTCATGCGCCG 61.505 55.000 4.18 0.00 45.42 6.46
4999 5611 0.666913 AATGATTCAGCTCATGCGCC 59.333 50.000 4.18 0.00 45.42 6.53
5000 5612 2.486951 AAATGATTCAGCTCATGCGC 57.513 45.000 0.00 0.00 45.42 6.09
5001 5613 3.964347 CGTTAAATGATTCAGCTCATGCG 59.036 43.478 0.00 0.00 45.42 4.73
5002 5614 4.285292 CCGTTAAATGATTCAGCTCATGC 58.715 43.478 0.00 0.00 36.03 4.06
5003 5615 4.285292 GCCGTTAAATGATTCAGCTCATG 58.715 43.478 0.00 0.00 36.03 3.07
5004 5616 3.316308 GGCCGTTAAATGATTCAGCTCAT 59.684 43.478 0.00 0.00 37.47 2.90
5005 5617 2.682856 GGCCGTTAAATGATTCAGCTCA 59.317 45.455 0.00 0.00 0.00 4.26
5006 5618 2.286418 CGGCCGTTAAATGATTCAGCTC 60.286 50.000 19.50 0.00 0.00 4.09
5007 5619 1.670811 CGGCCGTTAAATGATTCAGCT 59.329 47.619 19.50 0.00 0.00 4.24
5008 5620 1.268539 CCGGCCGTTAAATGATTCAGC 60.269 52.381 26.12 0.00 0.00 4.26
5014 5626 1.377463 CCCACCGGCCGTTAAATGA 60.377 57.895 26.12 0.00 0.00 2.57
5022 5634 2.806503 TAAACACATCCCACCGGCCG 62.807 60.000 21.04 21.04 0.00 6.13
5023 5635 0.395173 ATAAACACATCCCACCGGCC 60.395 55.000 0.00 0.00 0.00 6.13
5024 5636 0.738389 CATAAACACATCCCACCGGC 59.262 55.000 0.00 0.00 0.00 6.13
5025 5637 1.742831 CACATAAACACATCCCACCGG 59.257 52.381 0.00 0.00 0.00 5.28
5026 5638 1.132262 GCACATAAACACATCCCACCG 59.868 52.381 0.00 0.00 0.00 4.94
5030 5642 2.230992 TGCAAGCACATAAACACATCCC 59.769 45.455 0.00 0.00 0.00 3.85
5031 5643 3.504863 CTGCAAGCACATAAACACATCC 58.495 45.455 0.00 0.00 0.00 3.51
5355 6045 0.955428 TCACATTTCACAGCTCGGCC 60.955 55.000 0.00 0.00 0.00 6.13
5452 6144 3.178865 AGAGACCCGTTTATTTCTGGGA 58.821 45.455 2.60 0.00 44.88 4.37
5518 6211 1.741401 CGTGCGCTCTCCATCCAAA 60.741 57.895 9.73 0.00 0.00 3.28
5549 6242 2.071540 TCAGAAAGTGCTTCGATGCAG 58.928 47.619 24.61 12.82 44.20 4.41
5550 6243 2.071540 CTCAGAAAGTGCTTCGATGCA 58.928 47.619 20.86 20.86 39.22 3.96
5551 6244 1.202009 GCTCAGAAAGTGCTTCGATGC 60.202 52.381 15.88 15.88 39.22 3.91
5552 6245 2.344950 AGCTCAGAAAGTGCTTCGATG 58.655 47.619 0.00 0.00 44.16 3.84
5553 6246 2.615869 GAGCTCAGAAAGTGCTTCGAT 58.384 47.619 9.40 0.00 46.35 3.59
5554 6247 1.337260 GGAGCTCAGAAAGTGCTTCGA 60.337 52.381 17.19 0.00 46.35 3.71
5555 6248 1.074752 GGAGCTCAGAAAGTGCTTCG 58.925 55.000 17.19 0.00 46.35 3.79
5562 6255 4.836825 TCTATGTTTGGGAGCTCAGAAAG 58.163 43.478 17.19 2.02 0.00 2.62
5569 6262 2.711542 CCGTTTCTATGTTTGGGAGCT 58.288 47.619 0.00 0.00 0.00 4.09
5571 6264 2.711542 AGCCGTTTCTATGTTTGGGAG 58.288 47.619 0.00 0.00 0.00 4.30
5580 6273 6.096987 TGAGACTCTATTGAAGCCGTTTCTAT 59.903 38.462 3.68 0.00 36.71 1.98
5610 6303 8.358148 GGACCGTGTTAGAGATTATATTCTCAA 58.642 37.037 21.09 12.95 43.82 3.02
5620 6313 4.039973 TGTTTGAGGACCGTGTTAGAGATT 59.960 41.667 0.00 0.00 0.00 2.40
5626 6319 2.369203 TCCATGTTTGAGGACCGTGTTA 59.631 45.455 0.00 0.00 0.00 2.41
5629 6322 1.001974 TCTCCATGTTTGAGGACCGTG 59.998 52.381 0.00 0.00 0.00 4.94
5653 6346 2.265739 GCCACTGATCGCAGGACA 59.734 61.111 0.00 0.00 46.60 4.02
5662 6355 2.270205 CCAAGCTCCGCCACTGAT 59.730 61.111 0.00 0.00 0.00 2.90
5674 6367 2.363359 CCTCCATAAATTCAGCCCAAGC 59.637 50.000 0.00 0.00 40.32 4.01
5675 6368 2.961062 CCCTCCATAAATTCAGCCCAAG 59.039 50.000 0.00 0.00 0.00 3.61
5677 6370 1.217689 CCCCTCCATAAATTCAGCCCA 59.782 52.381 0.00 0.00 0.00 5.36
5678 6371 2.001076 CCCCTCCATAAATTCAGCCC 57.999 55.000 0.00 0.00 0.00 5.19
5679 6372 1.332195 GCCCCTCCATAAATTCAGCC 58.668 55.000 0.00 0.00 0.00 4.85
5680 6373 2.071778 TGCCCCTCCATAAATTCAGC 57.928 50.000 0.00 0.00 0.00 4.26
5682 6375 3.710677 CCATTTGCCCCTCCATAAATTCA 59.289 43.478 0.00 0.00 0.00 2.57
5683 6376 3.071457 CCCATTTGCCCCTCCATAAATTC 59.929 47.826 0.00 0.00 0.00 2.17
5684 6377 3.047857 CCCATTTGCCCCTCCATAAATT 58.952 45.455 0.00 0.00 0.00 1.82
5685 6378 2.693210 CCCATTTGCCCCTCCATAAAT 58.307 47.619 0.00 0.00 0.00 1.40
5686 6379 1.969240 GCCCATTTGCCCCTCCATAAA 60.969 52.381 0.00 0.00 0.00 1.40
5687 6380 0.398381 GCCCATTTGCCCCTCCATAA 60.398 55.000 0.00 0.00 0.00 1.90
5688 6381 1.232792 GCCCATTTGCCCCTCCATA 59.767 57.895 0.00 0.00 0.00 2.74
5691 6384 2.761213 CAGCCCATTTGCCCCTCC 60.761 66.667 0.00 0.00 0.00 4.30
5692 6385 2.761213 CCAGCCCATTTGCCCCTC 60.761 66.667 0.00 0.00 0.00 4.30
5693 6386 3.275271 TCCAGCCCATTTGCCCCT 61.275 61.111 0.00 0.00 0.00 4.79
5694 6387 2.761213 CTCCAGCCCATTTGCCCC 60.761 66.667 0.00 0.00 0.00 5.80
5695 6388 2.761213 CCTCCAGCCCATTTGCCC 60.761 66.667 0.00 0.00 0.00 5.36
5696 6389 2.761213 CCCTCCAGCCCATTTGCC 60.761 66.667 0.00 0.00 0.00 4.52
5697 6390 2.761213 CCCCTCCAGCCCATTTGC 60.761 66.667 0.00 0.00 0.00 3.68
5698 6391 2.761213 GCCCCTCCAGCCCATTTG 60.761 66.667 0.00 0.00 0.00 2.32
5699 6392 2.810488 CTTGCCCCTCCAGCCCATTT 62.810 60.000 0.00 0.00 0.00 2.32
5700 6393 3.275271 TTGCCCCTCCAGCCCATT 61.275 61.111 0.00 0.00 0.00 3.16
5701 6394 3.747579 CTTGCCCCTCCAGCCCAT 61.748 66.667 0.00 0.00 0.00 4.00
5703 6396 3.224007 TTTCTTGCCCCTCCAGCCC 62.224 63.158 0.00 0.00 0.00 5.19
5704 6397 1.979155 GTTTCTTGCCCCTCCAGCC 60.979 63.158 0.00 0.00 0.00 4.85
5705 6398 0.613012 ATGTTTCTTGCCCCTCCAGC 60.613 55.000 0.00 0.00 0.00 4.85
5706 6399 1.180029 CATGTTTCTTGCCCCTCCAG 58.820 55.000 0.00 0.00 0.00 3.86
5707 6400 0.899717 GCATGTTTCTTGCCCCTCCA 60.900 55.000 0.00 0.00 33.95 3.86
5708 6401 0.613012 AGCATGTTTCTTGCCCCTCC 60.613 55.000 0.00 0.00 41.06 4.30
5709 6402 1.260544 AAGCATGTTTCTTGCCCCTC 58.739 50.000 0.00 0.00 41.06 4.30
5710 6403 1.720781 AAAGCATGTTTCTTGCCCCT 58.279 45.000 0.00 0.00 41.06 4.79
5711 6404 2.549064 AAAAGCATGTTTCTTGCCCC 57.451 45.000 0.00 0.00 41.06 5.80
5712 6405 3.006859 ACCTAAAAGCATGTTTCTTGCCC 59.993 43.478 0.00 0.00 41.06 5.36
5713 6406 4.257267 ACCTAAAAGCATGTTTCTTGCC 57.743 40.909 0.00 0.00 41.06 4.52
5714 6407 5.288804 TCAACCTAAAAGCATGTTTCTTGC 58.711 37.500 0.00 0.42 40.45 4.01
5715 6408 7.951530 AATCAACCTAAAAGCATGTTTCTTG 57.048 32.000 0.00 0.00 0.00 3.02
5716 6409 8.962884 AAAATCAACCTAAAAGCATGTTTCTT 57.037 26.923 0.00 0.00 0.00 2.52
5719 6412 9.830975 AGTTAAAATCAACCTAAAAGCATGTTT 57.169 25.926 0.00 0.00 0.00 2.83
5720 6413 9.476202 GAGTTAAAATCAACCTAAAAGCATGTT 57.524 29.630 0.00 0.00 0.00 2.71
5721 6414 7.807907 CGAGTTAAAATCAACCTAAAAGCATGT 59.192 33.333 0.00 0.00 0.00 3.21
5722 6415 8.020819 TCGAGTTAAAATCAACCTAAAAGCATG 58.979 33.333 0.00 0.00 0.00 4.06
5723 6416 8.021396 GTCGAGTTAAAATCAACCTAAAAGCAT 58.979 33.333 0.00 0.00 0.00 3.79
5724 6417 7.012515 TGTCGAGTTAAAATCAACCTAAAAGCA 59.987 33.333 0.00 0.00 0.00 3.91
5725 6418 7.357303 TGTCGAGTTAAAATCAACCTAAAAGC 58.643 34.615 0.00 0.00 0.00 3.51
6076 6769 1.267806 AGAAAACTCAAGCACGGCATG 59.732 47.619 0.00 0.00 0.00 4.06
6151 6844 4.944930 CGGTTCCATGTAATTTTAGGGACA 59.055 41.667 0.00 0.00 29.04 4.02
6168 6861 0.600255 CATATCGCAGGACCGGTTCC 60.600 60.000 9.42 11.98 46.33 3.62
6169 6862 0.104304 ACATATCGCAGGACCGGTTC 59.896 55.000 9.42 6.68 0.00 3.62
6170 6863 0.104304 GACATATCGCAGGACCGGTT 59.896 55.000 9.42 0.00 0.00 4.44
6172 6865 0.389391 AAGACATATCGCAGGACCGG 59.611 55.000 0.00 0.00 0.00 5.28
6173 6866 2.662700 GTAAGACATATCGCAGGACCG 58.337 52.381 0.00 0.00 0.00 4.79
6179 6872 5.344933 GCATCAATACGTAAGACATATCGCA 59.655 40.000 0.00 0.00 43.62 5.10
6180 6873 5.220228 GGCATCAATACGTAAGACATATCGC 60.220 44.000 0.00 0.00 43.62 4.58
6182 6875 6.868864 ACTGGCATCAATACGTAAGACATATC 59.131 38.462 0.00 0.00 43.62 1.63
6183 6876 6.759272 ACTGGCATCAATACGTAAGACATAT 58.241 36.000 0.00 0.00 43.62 1.78
6184 6877 6.156748 ACTGGCATCAATACGTAAGACATA 57.843 37.500 0.00 0.00 43.62 2.29
6185 6878 5.023533 ACTGGCATCAATACGTAAGACAT 57.976 39.130 0.00 0.00 43.62 3.06
6187 6880 6.897259 TTAACTGGCATCAATACGTAAGAC 57.103 37.500 0.00 0.00 43.62 3.01
6188 6881 8.500753 AAATTAACTGGCATCAATACGTAAGA 57.499 30.769 0.00 0.97 43.62 2.10
6358 7176 5.242838 TGGGAACTTTCTTTATTGCAACGAT 59.757 36.000 0.00 0.00 0.00 3.73
6361 7180 6.223120 ACATGGGAACTTTCTTTATTGCAAC 58.777 36.000 0.00 0.00 0.00 4.17
6563 7386 6.658553 AACTTTTTGTTCGACCTACACAGGG 61.659 44.000 0.00 0.00 39.48 4.45
6568 7391 9.107177 TGTAAATAACTTTTTGTTCGACCTACA 57.893 29.630 0.00 0.00 39.89 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.