Multiple sequence alignment - TraesCS7B01G383300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G383300 chr7B 100.000 4000 0 0 1 4000 649012441 649016440 0.000000e+00 7387.0
1 TraesCS7B01G383300 chr7B 94.784 3010 102 9 1012 4000 649211320 649214295 0.000000e+00 4638.0
2 TraesCS7B01G383300 chr7B 93.769 1653 85 10 1595 3243 649097626 649099264 0.000000e+00 2466.0
3 TraesCS7B01G383300 chr7B 94.600 963 48 2 2014 2975 649318793 649319752 0.000000e+00 1487.0
4 TraesCS7B01G383300 chr7B 85.485 1433 150 31 940 2333 648916473 648917886 0.000000e+00 1441.0
5 TraesCS7B01G383300 chr7B 85.659 1297 144 20 2325 3586 648917753 648919042 0.000000e+00 1327.0
6 TraesCS7B01G383300 chr7B 85.918 1193 139 13 1088 2270 648782987 648784160 0.000000e+00 1245.0
7 TraesCS7B01G383300 chr7B 94.530 713 38 1 3288 4000 649099260 649099971 0.000000e+00 1099.0
8 TraesCS7B01G383300 chr7B 85.516 863 77 21 1 845 649210305 649211137 0.000000e+00 857.0
9 TraesCS7B01G383300 chr7B 91.181 635 36 6 3367 4000 649319789 649320404 0.000000e+00 845.0
10 TraesCS7B01G383300 chr7B 78.755 1285 194 51 1088 2332 649247417 649248662 0.000000e+00 787.0
11 TraesCS7B01G383300 chr7B 96.154 52 2 0 829 880 649211154 649211205 7.120000e-13 86.1
12 TraesCS7B01G383300 chr7D 92.899 2380 107 24 593 2944 581384103 581386448 0.000000e+00 3402.0
13 TraesCS7B01G383300 chr7D 94.940 1680 72 4 2325 4000 581453406 581455076 0.000000e+00 2619.0
14 TraesCS7B01G383300 chr7D 92.842 1453 54 15 882 2333 581452136 581453539 0.000000e+00 2061.0
15 TraesCS7B01G383300 chr7D 95.768 1087 43 3 2915 4000 581389610 581390694 0.000000e+00 1749.0
16 TraesCS7B01G383300 chr7D 85.992 1442 132 36 940 2333 581289520 581290939 0.000000e+00 1480.0
17 TraesCS7B01G383300 chr7D 86.321 1294 137 16 2325 3586 581290806 581292091 0.000000e+00 1373.0
18 TraesCS7B01G383300 chr7D 91.009 634 39 8 3367 3999 581690342 581690958 0.000000e+00 839.0
19 TraesCS7B01G383300 chr7D 83.595 829 100 22 2325 3133 581431790 581432602 0.000000e+00 745.0
20 TraesCS7B01G383300 chr7D 83.233 829 102 23 2325 3133 581297801 581298612 0.000000e+00 726.0
21 TraesCS7B01G383300 chr7D 90.538 539 44 5 1 537 581383368 581383901 0.000000e+00 706.0
22 TraesCS7B01G383300 chr7D 87.669 592 60 7 1607 2192 581297090 581297674 0.000000e+00 676.0
23 TraesCS7B01G383300 chr7D 94.334 353 18 1 2971 3323 581386449 581386799 1.260000e-149 540.0
24 TraesCS7B01G383300 chr7D 90.594 404 27 2 3368 3771 581386810 581387202 3.540000e-145 525.0
25 TraesCS7B01G383300 chr7D 89.916 357 24 10 44 396 581451280 581451628 2.190000e-122 449.0
26 TraesCS7B01G383300 chr7D 86.755 302 27 4 1607 1897 581430864 581431163 1.390000e-84 324.0
27 TraesCS7B01G383300 chr7D 92.500 200 11 4 3775 3973 581388977 581389173 2.350000e-72 283.0
28 TraesCS7B01G383300 chr7D 79.213 356 43 14 3646 3972 581292248 581292601 6.730000e-53 219.0
29 TraesCS7B01G383300 chr7D 88.462 130 11 3 716 845 581451627 581451752 1.930000e-33 154.0
30 TraesCS7B01G383300 chr7A 94.170 1458 50 12 882 2333 673243736 673245164 0.000000e+00 2189.0
31 TraesCS7B01G383300 chr7A 94.427 1310 59 4 2325 3628 673245031 673246332 0.000000e+00 2002.0
32 TraesCS7B01G383300 chr7A 86.481 1435 144 29 940 2333 673126358 673127783 0.000000e+00 1530.0
33 TraesCS7B01G383300 chr7A 94.699 962 50 1 2015 2975 673314538 673315499 0.000000e+00 1493.0
34 TraesCS7B01G383300 chr7A 86.276 1297 137 19 2325 3586 673127650 673128940 0.000000e+00 1371.0
35 TraesCS7B01G383300 chr7A 89.325 637 51 11 3367 4000 673315536 673316158 0.000000e+00 784.0
36 TraesCS7B01G383300 chr7A 86.581 626 50 18 1607 2213 673133168 673133778 0.000000e+00 660.0
37 TraesCS7B01G383300 chr7A 81.510 384 45 11 278 658 673243177 673243537 3.910000e-75 292.0
38 TraesCS7B01G383300 chr7A 78.711 357 45 15 3646 3973 673129097 673129451 4.050000e-50 209.0
39 TraesCS7B01G383300 chr7A 79.832 119 21 3 683 800 657012659 657012543 2.560000e-12 84.2
40 TraesCS7B01G383300 chr5B 76.699 309 46 14 375 657 677806083 677805775 8.960000e-32 148.0
41 TraesCS7B01G383300 chr5B 96.970 33 0 1 312 344 705630559 705630528 2.000000e-03 54.7
42 TraesCS7B01G383300 chr1B 97.368 38 0 1 3963 4000 567464573 567464609 3.340000e-06 63.9
43 TraesCS7B01G383300 chr1B 100.000 30 0 0 314 343 593917280 593917251 5.580000e-04 56.5
44 TraesCS7B01G383300 chr6D 97.143 35 1 0 313 347 310134183 310134217 4.320000e-05 60.2
45 TraesCS7B01G383300 chr6A 92.857 42 1 2 3959 3999 30373751 30373711 4.320000e-05 60.2
46 TraesCS7B01G383300 chr3A 100.000 28 0 0 314 341 57218060 57218033 7.000000e-03 52.8
47 TraesCS7B01G383300 chr1D 100.000 28 0 0 314 341 438314522 438314495 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G383300 chr7B 649012441 649016440 3999 False 7387.000000 7387 100.000000 1 4000 1 chr7B.!!$F2 3999
1 TraesCS7B01G383300 chr7B 649210305 649214295 3990 False 1860.366667 4638 92.151333 1 4000 3 chr7B.!!$F6 3999
2 TraesCS7B01G383300 chr7B 649097626 649099971 2345 False 1782.500000 2466 94.149500 1595 4000 2 chr7B.!!$F5 2405
3 TraesCS7B01G383300 chr7B 648916473 648919042 2569 False 1384.000000 1441 85.572000 940 3586 2 chr7B.!!$F4 2646
4 TraesCS7B01G383300 chr7B 648782987 648784160 1173 False 1245.000000 1245 85.918000 1088 2270 1 chr7B.!!$F1 1182
5 TraesCS7B01G383300 chr7B 649318793 649320404 1611 False 1166.000000 1487 92.890500 2014 4000 2 chr7B.!!$F7 1986
6 TraesCS7B01G383300 chr7B 649247417 649248662 1245 False 787.000000 787 78.755000 1088 2332 1 chr7B.!!$F3 1244
7 TraesCS7B01G383300 chr7D 581451280 581455076 3796 False 1320.750000 2619 91.540000 44 4000 4 chr7D.!!$F6 3956
8 TraesCS7B01G383300 chr7D 581383368 581390694 7326 False 1200.833333 3402 92.772167 1 4000 6 chr7D.!!$F4 3999
9 TraesCS7B01G383300 chr7D 581289520 581292601 3081 False 1024.000000 1480 83.842000 940 3972 3 chr7D.!!$F2 3032
10 TraesCS7B01G383300 chr7D 581690342 581690958 616 False 839.000000 839 91.009000 3367 3999 1 chr7D.!!$F1 632
11 TraesCS7B01G383300 chr7D 581297090 581298612 1522 False 701.000000 726 85.451000 1607 3133 2 chr7D.!!$F3 1526
12 TraesCS7B01G383300 chr7D 581430864 581432602 1738 False 534.500000 745 85.175000 1607 3133 2 chr7D.!!$F5 1526
13 TraesCS7B01G383300 chr7A 673243177 673246332 3155 False 1494.333333 2189 90.035667 278 3628 3 chr7A.!!$F2 3350
14 TraesCS7B01G383300 chr7A 673314538 673316158 1620 False 1138.500000 1493 92.012000 2015 4000 2 chr7A.!!$F3 1985
15 TraesCS7B01G383300 chr7A 673126358 673133778 7420 False 942.500000 1530 84.512250 940 3973 4 chr7A.!!$F1 3033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 503 0.322277 ACTCTAGCCGGACAGAACGA 60.322 55.000 5.05 0.0 0.00 3.85 F
897 1473 1.002544 GACTTGCTCTTAGCCCAGTGT 59.997 52.381 5.77 0.0 41.51 3.55 F
1765 2420 0.605589 CTGAAACCGGGAGTTGGGTC 60.606 60.000 6.32 0.0 39.19 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1651 2294 1.002624 GAAATGAGGGGACACGGCA 60.003 57.895 0.00 0.00 0.0 5.69 R
2736 4127 1.804151 GTGGCGTGATGTTCTGCTAAA 59.196 47.619 0.00 0.00 0.0 1.85 R
3490 8119 0.392193 CCTGGGCTAGCTGACAACTG 60.392 60.000 15.72 0.79 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.725459 CAGCACAATGCCGCACGA 61.725 61.111 0.00 0.00 46.52 4.35
134 135 1.593933 GCCTCGACAGTCTACTCTACG 59.406 57.143 0.00 0.00 0.00 3.51
135 136 2.891112 CCTCGACAGTCTACTCTACGT 58.109 52.381 0.00 0.00 0.00 3.57
220 221 9.938280 GGGTTTAAATTCCTAGCTTTTGTAATT 57.062 29.630 0.00 0.00 0.00 1.40
370 374 7.710907 GTCATCTGGAAACATTATACAGCTACA 59.289 37.037 0.00 0.00 41.51 2.74
408 412 2.835764 AGCAGATCCTGTAAACCCGTAA 59.164 45.455 0.00 0.00 33.43 3.18
469 473 1.750018 CCTTGGGACGCATGCATGA 60.750 57.895 30.64 5.03 0.00 3.07
491 495 2.631062 TCAAACTCAAACTCTAGCCGGA 59.369 45.455 5.05 0.00 0.00 5.14
499 503 0.322277 ACTCTAGCCGGACAGAACGA 60.322 55.000 5.05 0.00 0.00 3.85
509 513 2.125552 CAGAACGATGCCGCTCCA 60.126 61.111 0.00 0.00 39.95 3.86
543 547 4.704833 GGTCCGCTGCTTGCTCCA 62.705 66.667 0.00 0.00 40.11 3.86
544 548 3.123620 GTCCGCTGCTTGCTCCAG 61.124 66.667 0.00 0.00 40.11 3.86
548 552 3.797546 GCTGCTTGCTCCAGCGAC 61.798 66.667 7.79 0.00 45.20 5.19
549 553 2.357881 CTGCTTGCTCCAGCGACA 60.358 61.111 0.00 0.00 43.37 4.35
550 554 2.666190 TGCTTGCTCCAGCGACAC 60.666 61.111 0.00 0.00 43.37 3.67
551 555 2.358003 GCTTGCTCCAGCGACACT 60.358 61.111 0.00 0.00 45.83 3.55
552 556 2.386660 GCTTGCTCCAGCGACACTC 61.387 63.158 0.00 0.00 45.83 3.51
553 557 1.291588 CTTGCTCCAGCGACACTCT 59.708 57.895 0.00 0.00 45.83 3.24
554 558 1.005748 TTGCTCCAGCGACACTCTG 60.006 57.895 0.00 0.00 45.83 3.35
597 767 4.776322 CCGACAATGCTCCGGCCA 62.776 66.667 2.24 0.00 36.62 5.36
624 794 3.780173 GAGCTCCTCCGCCTGCTT 61.780 66.667 0.87 0.00 35.76 3.91
644 814 4.678499 TGCTCGCATGCGGTGTCA 62.678 61.111 37.18 25.25 40.25 3.58
645 815 3.422303 GCTCGCATGCGGTGTCAA 61.422 61.111 37.18 17.88 40.25 3.18
646 816 2.780643 CTCGCATGCGGTGTCAAG 59.219 61.111 37.18 23.07 40.25 3.02
647 817 2.741985 TCGCATGCGGTGTCAAGG 60.742 61.111 37.18 8.69 40.25 3.61
648 818 4.465512 CGCATGCGGTGTCAAGGC 62.466 66.667 31.99 0.00 35.56 4.35
649 819 4.120331 GCATGCGGTGTCAAGGCC 62.120 66.667 0.00 0.00 0.00 5.19
657 841 2.530151 TGTCAAGGCCCCTGCTCT 60.530 61.111 0.00 0.00 37.74 4.09
659 843 2.203983 TCAAGGCCCCTGCTCTGA 60.204 61.111 0.00 0.00 37.74 3.27
670 854 1.729470 CTGCTCTGACCGACCGCTAT 61.729 60.000 0.00 0.00 0.00 2.97
691 875 2.224495 GAGCTTCTCTGCCTGCTCGT 62.224 60.000 0.00 0.00 41.67 4.18
700 884 2.356313 CCTGCTCGTTGCTCGTGT 60.356 61.111 5.00 0.00 43.37 4.49
708 892 2.512745 TTGCTCGTGTGCGGTGTT 60.513 55.556 0.00 0.00 38.89 3.32
713 897 3.882013 CGTGTGCGGTGTTGCCAA 61.882 61.111 0.00 0.00 36.97 4.52
762 947 2.047830 AGGTTCCCTCAAGAACGACTT 58.952 47.619 0.00 0.00 45.82 3.01
807 992 4.509970 TGGTTGCTCCAATATACGAAATCG 59.490 41.667 0.48 0.48 44.12 3.34
814 999 7.042321 TGCTCCAATATACGAAATCGGTAAAAG 60.042 37.037 7.81 0.00 44.95 2.27
818 1004 9.991388 CCAATATACGAAATCGGTAAAAGAAAA 57.009 29.630 7.81 0.00 44.95 2.29
821 1007 9.977762 ATATACGAAATCGGTAAAAGAAAACAC 57.022 29.630 7.81 0.00 44.95 3.32
822 1008 5.199726 ACGAAATCGGTAAAAGAAAACACG 58.800 37.500 7.81 0.00 44.95 4.49
880 1447 6.872920 TCTGTGCAAATTTAAAGGTTTGACT 58.127 32.000 15.30 0.00 37.48 3.41
897 1473 1.002544 GACTTGCTCTTAGCCCAGTGT 59.997 52.381 5.77 0.00 41.51 3.55
1074 1677 4.959596 GCTGCTCGATCTCGCCCC 62.960 72.222 0.00 0.00 39.60 5.80
1535 2169 2.125310 CCTCATACGTTGCCGGCA 60.125 61.111 29.03 29.03 38.78 5.69
1651 2294 2.948979 TGAACGCTTGTGTTTTGATCCT 59.051 40.909 0.98 0.00 30.75 3.24
1689 2332 2.232452 TCCATGTGTTTTTATTGCCGGG 59.768 45.455 2.18 0.00 0.00 5.73
1765 2420 0.605589 CTGAAACCGGGAGTTGGGTC 60.606 60.000 6.32 0.00 39.19 4.46
1919 2583 2.306219 GGGGAAGCAAGGACTAACTTCT 59.694 50.000 11.62 0.00 38.81 2.85
2123 3124 6.507900 CGACACATAGAATACCTTGATGAGT 58.492 40.000 0.00 0.00 0.00 3.41
2434 3803 1.197721 AGCTACAATCGTTGCACAAGC 59.802 47.619 0.00 0.00 45.01 4.01
2736 4127 9.938280 GCCCTGTCTTTTAAATAGGTTATTTTT 57.062 29.630 0.00 0.00 39.06 1.94
2777 4169 5.220989 CCACAATGATGCTGTTGATAGGAAG 60.221 44.000 0.00 0.00 0.00 3.46
3178 7789 6.372103 GGAGCTTAGTAGGGTCTTTTCTTTTC 59.628 42.308 10.82 0.00 0.00 2.29
3311 7923 1.281867 TGGACCCTGTATTCAGCAAGG 59.718 52.381 0.00 0.00 40.09 3.61
3397 8025 4.752101 CGGGATCGAAAGCTAATTTCAGAT 59.248 41.667 0.00 0.00 46.50 2.90
3405 8033 8.328146 TCGAAAGCTAATTTCAGATATTGTTCG 58.672 33.333 0.00 12.27 46.50 3.95
3490 8119 8.062448 GCTAATGATATGTGTTCCGTACTTTTC 58.938 37.037 0.00 0.00 0.00 2.29
3728 8485 6.207691 CTGGTTTCAGTTTGAGAAAAGGAA 57.792 37.500 0.00 0.00 36.80 3.36
3771 8528 9.950680 ATATTGTTCTAAAATATTGCAACCTCG 57.049 29.630 0.00 0.00 27.96 4.63
3811 8568 0.546122 TGTCAGTGGTGCTCAAACCT 59.454 50.000 0.00 0.00 41.16 3.50
3819 8576 2.298610 GGTGCTCAAACCTAATAGGGC 58.701 52.381 11.52 4.50 40.58 5.19
3820 8577 2.298610 GTGCTCAAACCTAATAGGGCC 58.701 52.381 11.52 0.00 40.58 5.80
3947 8734 1.965935 CGCCACCCATATCAACATGA 58.034 50.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.598407 TAAAGGCTTTCGTGCGGCA 60.598 52.632 17.13 0.00 0.00 5.69
42 43 3.305964 GAAAAGGTAAAGGCTTTCGTGC 58.694 45.455 17.13 5.58 0.00 5.34
44 45 3.558033 TGGAAAAGGTAAAGGCTTTCGT 58.442 40.909 17.13 7.22 0.00 3.85
47 48 3.576861 AGCTGGAAAAGGTAAAGGCTTT 58.423 40.909 17.76 17.76 33.90 3.51
89 90 2.490903 GCTTGTCTTTGGTGAGCATGAT 59.509 45.455 0.00 0.00 33.68 2.45
134 135 0.326264 AGGCCAGATCTCACCAACAC 59.674 55.000 5.01 0.00 0.00 3.32
135 136 0.615331 GAGGCCAGATCTCACCAACA 59.385 55.000 5.01 0.00 0.00 3.33
174 175 2.880890 CCTTATGAGGCATTAGTGGTGC 59.119 50.000 0.00 0.00 41.78 5.01
286 290 4.133820 TGAAAGTGTCACAATTCCACGAT 58.866 39.130 15.09 0.00 34.34 3.73
469 473 3.260884 TCCGGCTAGAGTTTGAGTTTGAT 59.739 43.478 0.00 0.00 0.00 2.57
491 495 2.125512 GGAGCGGCATCGTTCTGT 60.126 61.111 1.45 0.00 44.30 3.41
533 537 2.666190 GTGTCGCTGGAGCAAGCA 60.666 61.111 6.83 0.00 43.73 3.91
537 541 2.653115 CAGAGTGTCGCTGGAGCA 59.347 61.111 0.00 0.00 42.21 4.26
634 804 4.740822 GGGGCCTTGACACCGCAT 62.741 66.667 0.84 0.00 38.68 4.73
644 814 3.334054 GGTCAGAGCAGGGGCCTT 61.334 66.667 0.84 0.00 42.56 4.35
647 817 4.459089 GTCGGTCAGAGCAGGGGC 62.459 72.222 0.00 0.00 41.61 5.80
648 818 3.775654 GGTCGGTCAGAGCAGGGG 61.776 72.222 0.00 0.00 46.08 4.79
657 841 2.831366 GCTCGATAGCGGTCGGTCA 61.831 63.158 12.64 0.00 41.74 4.02
670 854 1.943116 GAGCAGGCAGAGAAGCTCGA 61.943 60.000 0.00 0.00 43.27 4.04
677 861 2.047844 GCAACGAGCAGGCAGAGA 60.048 61.111 0.00 0.00 44.79 3.10
691 875 2.512745 AACACCGCACACGAGCAA 60.513 55.556 0.00 0.00 43.93 3.91
762 947 5.066375 CCATGCCTCATATTTCGAGTTTTCA 59.934 40.000 0.00 0.00 0.00 2.69
807 992 4.615223 GCAGATCCCGTGTTTTCTTTTACC 60.615 45.833 0.00 0.00 0.00 2.85
814 999 1.463674 ATGGCAGATCCCGTGTTTTC 58.536 50.000 0.00 0.00 0.00 2.29
818 1004 1.837439 TCTAAATGGCAGATCCCGTGT 59.163 47.619 0.00 0.00 0.00 4.49
819 1005 2.487934 CTCTAAATGGCAGATCCCGTG 58.512 52.381 0.00 0.00 0.00 4.94
820 1006 1.417890 CCTCTAAATGGCAGATCCCGT 59.582 52.381 0.00 0.00 0.00 5.28
821 1007 1.694150 TCCTCTAAATGGCAGATCCCG 59.306 52.381 0.00 0.00 0.00 5.14
822 1008 3.586618 AGATCCTCTAAATGGCAGATCCC 59.413 47.826 6.93 0.00 32.38 3.85
880 1447 2.257207 AGTACACTGGGCTAAGAGCAA 58.743 47.619 0.21 0.00 44.75 3.91
938 1514 2.671963 GAAACCCACGGGACTGGC 60.672 66.667 9.72 0.00 38.96 4.85
1074 1677 2.516460 ATCCGTCCGTCCTCCGAG 60.516 66.667 0.00 0.00 39.56 4.63
1535 2169 1.375523 GGAACTCGTCGCCATGGTT 60.376 57.895 14.67 0.00 0.00 3.67
1651 2294 1.002624 GAAATGAGGGGACACGGCA 60.003 57.895 0.00 0.00 0.00 5.69
1689 2332 1.906105 TTGGTCCTCCATACACGCCC 61.906 60.000 0.00 0.00 43.91 6.13
1694 2337 1.064758 GCCATGTTGGTCCTCCATACA 60.065 52.381 0.00 0.00 43.91 2.29
1765 2420 3.305950 CGCTCCATCTCTTCTCCTTATGG 60.306 52.174 0.00 0.00 38.76 2.74
1919 2583 4.040047 ACATCCAGACCATCAGGAACATA 58.960 43.478 0.00 0.00 35.62 2.29
2123 3124 6.238731 GGATGAATTGCAATCCAATCGAAGTA 60.239 38.462 13.38 0.00 43.22 2.24
2390 3759 6.101997 TCTTCATATAGCGGCACATATTGAG 58.898 40.000 1.45 5.49 0.00 3.02
2434 3803 6.644191 CTCCATAGCATGAATAAGACATCG 57.356 41.667 0.00 0.00 0.00 3.84
2736 4127 1.804151 GTGGCGTGATGTTCTGCTAAA 59.196 47.619 0.00 0.00 0.00 1.85
2777 4169 4.637534 ACAGCAGGATGAACATTATGACAC 59.362 41.667 0.00 0.00 39.69 3.67
3311 7923 5.699097 TGATAAGTTGGCAAGGTTACAAC 57.301 39.130 0.00 0.00 43.50 3.32
3397 8025 7.899178 TGCTCTTACTTTCAATCGAACAATA 57.101 32.000 0.00 0.00 0.00 1.90
3405 8033 7.811713 AGCTTTGATTTGCTCTTACTTTCAATC 59.188 33.333 0.00 0.00 33.90 2.67
3415 8043 4.431661 GCAGTAGCTTTGATTTGCTCTT 57.568 40.909 0.00 0.00 40.35 2.85
3490 8119 0.392193 CCTGGGCTAGCTGACAACTG 60.392 60.000 15.72 0.79 0.00 3.16
3771 8528 4.082245 ACAACATGCATACAAAAGTAGGGC 60.082 41.667 0.00 0.00 0.00 5.19
3820 8577 2.247358 ACATAACAAAACAGCAGGGGG 58.753 47.619 0.00 0.00 0.00 5.40
3947 8734 8.357402 GTTTAACAAAGACATGGGTCACTAATT 58.643 33.333 0.00 0.00 46.80 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.