AutoCloner

Multiple sequence alignment - TraesCS7B01G383200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G383200	chr7B	100.000	3085	0	0	541	3625	648916091	648919175	0.000000e+00	5698.0
1	TraesCS7B01G383200	chr7B	96.197	1236	47	0	1038	2273	648782925	648784160	0.000000e+00	2023.0
2	TraesCS7B01G383200	chr7B	85.505	1435	146	34	923	2336	649013380	649014773	0.000000e+00	1441.0
3	TraesCS7B01G383200	chr7B	85.659	1297	144	20	2203	3492	649014765	649016026	0.000000e+00	1327.0
4	TraesCS7B01G383200	chr7B	85.219	1299	148	21	2203	3492	649212603	649213866	0.000000e+00	1295.0
5	TraesCS7B01G383200	chr7B	83.756	1342	156	40	1007	2336	649211320	649212611	0.000000e+00	1214.0
6	TraesCS7B01G383200	chr7B	85.501	938	109	12	2204	3136	649098348	649099263	0.000000e+00	953.0
7	TraesCS7B01G383200	chr7B	87.055	703	76	4	1634	2336	649097668	649098355	0.000000e+00	780.0
8	TraesCS7B01G383200	chr7B	84.800	750	81	16	1805	2551	648925942	648926661	0.000000e+00	723.0
9	TraesCS7B01G383200	chr7B	80.630	413	55	9	2615	3018	648926673	648927069	2.740000e-76	296.0
10	TraesCS7B01G383200	chr7B	100.000	51	0	0	1	51	648915551	648915601	1.070000e-15	95.3
11	TraesCS7B01G383200	chr7D	94.238	3072	117	27	575	3625	581289192	581292224	0.000000e+00	4638.0
12	TraesCS7B01G383200	chr7D	85.355	2506	269	48	1007	3492	581452235	581454662	0.000000e+00	2505.0
13	TraesCS7B01G383200	chr7D	85.965	1425	156	32	924	2336	581384469	581385861	0.000000e+00	1483.0
14	TraesCS7B01G383200	chr7D	84.076	1099	138	19	1927	3012	581431517	581432591	0.000000e+00	1026.0
15	TraesCS7B01G383200	chr7D	88.186	601	60	7	1597	2195	581297083	581297674	0.000000e+00	706.0
16	TraesCS7B01G383200	chr7D	84.637	703	76	19	2798	3492	581389604	581390282	0.000000e+00	671.0
17	TraesCS7B01G383200	chr7D	91.736	484	22	12	634	1112	581288029	581288499	0.000000e+00	656.0
18	TraesCS7B01G383200	chr7D	89.286	308	22	5	1597	1894	581430857	581431163	3.420000e-100	375.0
19	TraesCS7B01G383200	chr7D	87.554	233	12	3	3393	3625	581294444	581294659	1.670000e-63	254.0
20	TraesCS7B01G383200	chr7D	86.695	233	13	9	3393	3625	581428567	581428781	3.620000e-60	243.0
21	TraesCS7B01G383200	chr7D	83.534	249	34	4	3246	3492	581690314	581690557	3.640000e-55	226.0
22	TraesCS7B01G383200	chr7A	92.850	2923	155	22	729	3625	673126179	673129073	0.000000e+00	4191.0
23	TraesCS7B01G383200	chr7A	84.806	2580	284	60	935	3492	673243795	673246288	0.000000e+00	2494.0
24	TraesCS7B01G383200	chr7A	76.700	2073	330	88	1078	3064	648274174	648272169	0.000000e+00	1011.0
25	TraesCS7B01G383200	chr7A	83.871	868	111	14	2002	2859	673133770	673134618	0.000000e+00	800.0
26	TraesCS7B01G383200	chr7A	85.837	233	15	9	3393	3625	673130862	673131076	7.830000e-57	231.0
27	TraesCS7B01G383200	chr5D	94.767	172	9	0	567	738	289690987	289691158	5.970000e-68	268.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G383200	chr7B	648915551	648919175	3624	False	2896.650000	5698	100.000000	1	3625	2	chr7B.!!$F2	3624
1	TraesCS7B01G383200	chr7B	648782925	648784160	1235	False	2023.000000	2023	96.197000	1038	2273	1	chr7B.!!$F1	1235
2	TraesCS7B01G383200	chr7B	649013380	649016026	2646	False	1384.000000	1441	85.582000	923	3492	2	chr7B.!!$F4	2569
3	TraesCS7B01G383200	chr7B	649211320	649213866	2546	False	1254.500000	1295	84.487500	1007	3492	2	chr7B.!!$F6	2485
4	TraesCS7B01G383200	chr7B	649097668	649099263	1595	False	866.500000	953	86.278000	1634	3136	2	chr7B.!!$F5	1502
5	TraesCS7B01G383200	chr7B	648925942	648927069	1127	False	509.500000	723	82.715000	1805	3018	2	chr7B.!!$F3	1213
6	TraesCS7B01G383200	chr7D	581452235	581454662	2427	False	2505.000000	2505	85.355000	1007	3492	1	chr7D.!!$F1	2485
7	TraesCS7B01G383200	chr7D	581288029	581297674	9645	False	1563.500000	4638	90.428500	575	3625	4	chr7D.!!$F3	3050
8	TraesCS7B01G383200	chr7D	581384469	581390282	5813	False	1077.000000	1483	85.301000	924	3492	2	chr7D.!!$F4	2568
9	TraesCS7B01G383200	chr7D	581428567	581432591	4024	False	548.000000	1026	86.685667	1597	3625	3	chr7D.!!$F5	2028
10	TraesCS7B01G383200	chr7A	673243795	673246288	2493	False	2494.000000	2494	84.806000	935	3492	1	chr7A.!!$F1	2557
11	TraesCS7B01G383200	chr7A	673126179	673134618	8439	False	1740.666667	4191	87.519333	729	3625	3	chr7A.!!$F2	2896
12	TraesCS7B01G383200	chr7A	648272169	648274174	2005	True	1011.000000	1011	76.700000	1078	3064	1	chr7A.!!$R1	1986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
574	575	0.032952	CCCGGAAAGAGAACGTCACA	59.967	55.0	0.73	0.0	0.0	3.58	F
1092	2299	0.460109	TGATGGAGAACGGACGCATG	60.460	55.0	0.00	0.0	0.0	4.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1687	2932	1.07409	TTGGTCCTCCACCTCCACA	60.074	57.895	0.0	0.0	46.98	4.17	R
2911	8108	2.47441	AAGAGTTGAACATCGTCCCC	57.526	50.000	0.0	0.0	0.00	4.81	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	9.956640	CTTATTCTTTCCATTCCTAGCATATCT	57.043	33.333	0.00	0.00	0.00	1.98
27	28	9.950496	TTATTCTTTCCATTCCTAGCATATCTC	57.050	33.333	0.00	0.00	0.00	2.75
28	29	7.623999	TTCTTTCCATTCCTAGCATATCTCT	57.376	36.000	0.00	0.00	0.00	3.10
29	30	7.623999	TCTTTCCATTCCTAGCATATCTCTT	57.376	36.000	0.00	0.00	0.00	2.85
31	32	8.589338	TCTTTCCATTCCTAGCATATCTCTTAC	58.411	37.037	0.00	0.00	0.00	2.34
33	34	9.601810	TTTCCATTCCTAGCATATCTCTTACTA	57.398	33.333	0.00	0.00	0.00	1.82
35	36	8.615705	TCCATTCCTAGCATATCTCTTACTAGA	58.384	37.037	0.00	0.00	33.66	2.43
37	38	7.931578	TTCCTAGCATATCTCTTACTAGAGC	57.068	40.000	0.00	0.00	46.24	4.09
38	39	7.265599	TCCTAGCATATCTCTTACTAGAGCT	57.734	40.000	0.00	0.00	46.24	4.09
39	40	7.109501	TCCTAGCATATCTCTTACTAGAGCTG	58.890	42.308	0.00	0.00	46.24	4.24
40	41	7.037945	TCCTAGCATATCTCTTACTAGAGCTGA	60.038	40.741	0.00	0.00	46.24	4.26
41	42	6.817765	AGCATATCTCTTACTAGAGCTGAC	57.182	41.667	0.00	0.00	46.24	3.51
42	43	5.710099	AGCATATCTCTTACTAGAGCTGACC	59.290	44.000	0.00	0.00	46.24	4.02
43	44	5.710099	GCATATCTCTTACTAGAGCTGACCT	59.290	44.000	0.00	0.00	46.24	3.85
44	45	6.208599	GCATATCTCTTACTAGAGCTGACCTT	59.791	42.308	0.00	0.00	46.24	3.50
46	47	9.461312	CATATCTCTTACTAGAGCTGACCTTAT	57.539	37.037	0.00	0.00	46.24	1.73
48	49	5.992829	TCTCTTACTAGAGCTGACCTTATCG	59.007	44.000	0.00	0.00	46.24	2.92
49	50	5.926663	TCTTACTAGAGCTGACCTTATCGA	58.073	41.667	0.00	0.00	0.00	3.59
558	559	2.351777	TAATCTGCCGATCTCCCCG	58.648	57.895	0.00	0.00	0.00	5.73
566	567	2.808598	CGATCTCCCCGGAAAGAGA	58.191	57.895	17.59	17.59	43.03	3.10
567	568	1.112113	CGATCTCCCCGGAAAGAGAA	58.888	55.000	18.73	6.75	42.20	2.87
568	569	1.202428	CGATCTCCCCGGAAAGAGAAC	60.202	57.143	18.73	15.74	42.20	3.01
569	570	0.824759	ATCTCCCCGGAAAGAGAACG	59.175	55.000	18.73	0.00	42.20	3.95
571	572	0.108756	CTCCCCGGAAAGAGAACGTC	60.109	60.000	0.73	0.00	31.43	4.34
572	573	0.828762	TCCCCGGAAAGAGAACGTCA	60.829	55.000	0.73	0.00	0.00	4.35
573	574	0.669625	CCCCGGAAAGAGAACGTCAC	60.670	60.000	0.73	0.00	0.00	3.67
574	575	0.032952	CCCGGAAAGAGAACGTCACA	59.967	55.000	0.73	0.00	0.00	3.58
575	576	1.539496	CCCGGAAAGAGAACGTCACAA	60.539	52.381	0.73	0.00	0.00	3.33
578	579	2.557317	GGAAAGAGAACGTCACAACCA	58.443	47.619	0.00	0.00	0.00	3.67
579	580	3.139077	GGAAAGAGAACGTCACAACCAT	58.861	45.455	0.00	0.00	0.00	3.55
581	582	4.036380	GGAAAGAGAACGTCACAACCATTT	59.964	41.667	0.00	0.00	0.00	2.32
582	583	4.552166	AAGAGAACGTCACAACCATTTG	57.448	40.909	0.00	0.00	38.83	2.32
583	584	2.290641	AGAGAACGTCACAACCATTTGC	59.709	45.455	0.00	0.00	36.00	3.68
584	585	1.002900	AGAACGTCACAACCATTTGCG	60.003	47.619	0.00	0.00	36.00	4.85
585	586	1.003331	GAACGTCACAACCATTTGCGA	60.003	47.619	0.00	0.00	36.00	5.10
587	588	1.002900	ACGTCACAACCATTTGCGAAG	60.003	47.619	0.00	0.00	36.00	3.79
588	589	1.662876	CGTCACAACCATTTGCGAAGG	60.663	52.381	0.00	0.00	36.00	3.46
589	590	1.606668	GTCACAACCATTTGCGAAGGA	59.393	47.619	0.00	0.00	36.00	3.36
591	592	2.487762	TCACAACCATTTGCGAAGGATC	59.512	45.455	0.00	0.00	36.00	3.36
592	593	2.228582	CACAACCATTTGCGAAGGATCA	59.771	45.455	0.00	0.00	36.00	2.92
595	596	4.107622	CAACCATTTGCGAAGGATCATTC	58.892	43.478	10.06	10.06	0.00	2.67
599	600	4.380761	CCATTTGCGAAGGATCATTCAACA	60.381	41.667	19.24	13.52	0.00	3.33
600	601	3.829886	TTGCGAAGGATCATTCAACAC	57.170	42.857	19.24	6.68	0.00	3.32
601	602	2.777094	TGCGAAGGATCATTCAACACA	58.223	42.857	19.24	8.98	0.00	3.72
603	604	3.189080	TGCGAAGGATCATTCAACACAAG	59.811	43.478	19.24	3.17	0.00	3.16
604	605	3.751621	CGAAGGATCATTCAACACAAGC	58.248	45.455	19.24	0.00	0.00	4.01
606	607	4.320421	CGAAGGATCATTCAACACAAGCAA	60.320	41.667	19.24	0.00	0.00	3.91
607	608	5.620654	CGAAGGATCATTCAACACAAGCAAT	60.621	40.000	19.24	0.00	0.00	3.56
608	609	5.320549	AGGATCATTCAACACAAGCAATC	57.679	39.130	0.00	0.00	0.00	2.67
609	610	4.159135	AGGATCATTCAACACAAGCAATCC	59.841	41.667	0.00	0.00	0.00	3.01
610	611	3.940209	TCATTCAACACAAGCAATCCC	57.060	42.857	0.00	0.00	0.00	3.85
611	612	3.499338	TCATTCAACACAAGCAATCCCT	58.501	40.909	0.00	0.00	0.00	4.20
612	613	3.507233	TCATTCAACACAAGCAATCCCTC	59.493	43.478	0.00	0.00	0.00	4.30
614	615	0.890683	CAACACAAGCAATCCCTCCC	59.109	55.000	0.00	0.00	0.00	4.30
615	616	0.482446	AACACAAGCAATCCCTCCCA	59.518	50.000	0.00	0.00	0.00	4.37
619	620	1.077663	ACAAGCAATCCCTCCCAATGT	59.922	47.619	0.00	0.00	0.00	2.71
621	622	2.568509	CAAGCAATCCCTCCCAATGTTT	59.431	45.455	0.00	0.00	0.00	2.83
622	623	3.756082	AGCAATCCCTCCCAATGTTTA	57.244	42.857	0.00	0.00	0.00	2.01
623	624	4.270317	AGCAATCCCTCCCAATGTTTAT	57.730	40.909	0.00	0.00	0.00	1.40
625	626	3.493176	GCAATCCCTCCCAATGTTTATGC	60.493	47.826	0.00	0.00	0.00	3.14
627	628	3.297134	TCCCTCCCAATGTTTATGCTC	57.703	47.619	0.00	0.00	0.00	4.26
628	629	1.949525	CCCTCCCAATGTTTATGCTCG	59.050	52.381	0.00	0.00	0.00	5.03
629	630	1.949525	CCTCCCAATGTTTATGCTCGG	59.050	52.381	0.00	0.00	0.00	4.63
630	631	2.421388	CCTCCCAATGTTTATGCTCGGA	60.421	50.000	0.00	0.00	0.00	4.55
631	632	2.874701	CTCCCAATGTTTATGCTCGGAG	59.125	50.000	0.00	0.00	0.00	4.63
633	634	2.614057	CCCAATGTTTATGCTCGGAGAC	59.386	50.000	9.69	0.74	0.00	3.36
727	728	2.802816	CACTAATGCCTCATAAGCGTCC	59.197	50.000	0.00	0.00	0.00	4.79
860	864	1.923909	GGGAGGGGTGGCACTAACT	60.924	63.158	18.45	12.81	0.00	2.24
861	865	0.619543	GGGAGGGGTGGCACTAACTA	60.620	60.000	18.45	0.00	0.00	2.24
918	2121	1.145377	CTAACGTATTGCCGGCCCT	59.855	57.895	26.77	13.97	0.00	5.19
1055	2262	2.413142	GCCATGCCCAGACAAGCTC	61.413	63.158	0.00	0.00	0.00	4.09
1092	2299	0.460109	TGATGGAGAACGGACGCATG	60.460	55.000	0.00	0.00	0.00	4.06
1138	2345	3.082548	CAGGCATCTCCATGAATCATCC	58.917	50.000	0.00	0.00	37.29	3.51
1365	2585	3.801997	CCGGAAGCTGCCCCAGAT	61.802	66.667	4.69	0.00	32.44	2.90
1687	2932	0.463620	ATGTGTTTTTGTTGCCGGCT	59.536	45.000	29.70	0.00	0.00	5.52
1792	3049	2.758736	AGAGATGGAGCGGCAATATC	57.241	50.000	1.45	2.57	0.00	1.63
2103	3696	0.478072	TCACATGTGTTTGGAGGGCT	59.522	50.000	24.63	0.00	0.00	5.19
2104	3701	1.133513	TCACATGTGTTTGGAGGGCTT	60.134	47.619	24.63	0.00	0.00	4.35
2126	3726	3.198417	TCATGCAGTCAGCCTTTATGAGA	59.802	43.478	0.00	0.00	44.83	3.27
2319	4044	5.356751	AGTTACAATCTTTGCACAAGTGACA	59.643	36.000	4.04	0.00	0.00	3.58
2322	4049	4.338964	ACAATCTTTGCACAAGTGACATCA	59.661	37.500	4.04	0.00	0.00	3.07
2682	4675	7.229306	GGAAATGTCATAATGTTCATCCTGCTA	59.771	37.037	0.00	0.00	0.00	3.49
2759	4754	8.649973	TTTATTTGTGGGTTTTGTTCACATAC	57.350	30.769	0.00	0.00	40.49	2.39
3041	8239	7.201767	GCTCCAATCTTACTTGTTCTTATGCAT	60.202	37.037	3.79	3.79	0.00	3.96
3221	8421	4.582701	CAAGATTGTAACCTTGCCAACA	57.417	40.909	0.00	0.00	34.20	3.33
3255	8456	5.622346	ACTTAGCCTAGGAAATGAGGAAG	57.378	43.478	14.75	5.55	34.46	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	7.623999	AAGAGATATGCTAGGAATGGAAAGA	57.376	36.000	0.00	0.00	0.00	2.52
6	7	8.592809	AGTAAGAGATATGCTAGGAATGGAAAG	58.407	37.037	0.00	0.00	0.00	2.62
9	10	8.615705	TCTAGTAAGAGATATGCTAGGAATGGA	58.384	37.037	0.00	0.00	34.86	3.41
10	11	8.815565	TCTAGTAAGAGATATGCTAGGAATGG	57.184	38.462	0.00	0.00	34.86	3.16
26	27	5.926663	TCGATAAGGTCAGCTCTAGTAAGA	58.073	41.667	0.00	0.00	0.00	2.10
27	28	6.811253	ATCGATAAGGTCAGCTCTAGTAAG	57.189	41.667	0.00	0.00	0.00	2.34
541	542	2.511452	CCGGGGAGATCGGCAGATT	61.511	63.158	0.00	0.00	41.07	2.40
542	543	2.919856	CCGGGGAGATCGGCAGAT	60.920	66.667	0.00	0.00	41.07	2.90
548	549	1.112113	TTCTCTTTCCGGGGAGATCG	58.888	55.000	18.28	5.96	38.23	3.69
549	550	1.202428	CGTTCTCTTTCCGGGGAGATC	60.202	57.143	18.28	16.48	38.23	2.75
550	551	0.824759	CGTTCTCTTTCCGGGGAGAT	59.175	55.000	18.28	0.00	38.23	2.75
552	553	0.108756	GACGTTCTCTTTCCGGGGAG	60.109	60.000	0.00	7.64	0.00	4.30
553	554	0.828762	TGACGTTCTCTTTCCGGGGA	60.829	55.000	0.00	0.00	0.00	4.81
554	555	0.669625	GTGACGTTCTCTTTCCGGGG	60.670	60.000	0.00	0.00	0.00	5.73
555	556	0.032952	TGTGACGTTCTCTTTCCGGG	59.967	55.000	0.00	0.00	0.00	5.73
556	557	1.525619	GTTGTGACGTTCTCTTTCCGG	59.474	52.381	0.00	0.00	0.00	5.14
557	558	1.525619	GGTTGTGACGTTCTCTTTCCG	59.474	52.381	0.00	0.00	0.00	4.30
558	559	2.557317	TGGTTGTGACGTTCTCTTTCC	58.443	47.619	0.00	0.00	0.00	3.13
559	560	4.813296	AATGGTTGTGACGTTCTCTTTC	57.187	40.909	0.00	0.00	0.00	2.62
560	561	4.733523	GCAAATGGTTGTGACGTTCTCTTT	60.734	41.667	0.00	0.00	37.06	2.52
561	562	3.243068	GCAAATGGTTGTGACGTTCTCTT	60.243	43.478	0.00	0.00	37.06	2.85
562	563	2.290641	GCAAATGGTTGTGACGTTCTCT	59.709	45.455	0.00	0.00	37.06	3.10
565	566	1.003331	TCGCAAATGGTTGTGACGTTC	60.003	47.619	0.00	0.00	46.72	3.95
566	567	1.018148	TCGCAAATGGTTGTGACGTT	58.982	45.000	0.00	0.00	46.72	3.99
567	568	2.696566	TCGCAAATGGTTGTGACGT	58.303	47.368	0.00	0.00	46.72	4.34
571	572	2.228582	TGATCCTTCGCAAATGGTTGTG	59.771	45.455	0.00	0.00	44.99	3.33
572	573	2.513753	TGATCCTTCGCAAATGGTTGT	58.486	42.857	0.00	0.00	37.06	3.32
573	574	3.788333	ATGATCCTTCGCAAATGGTTG	57.212	42.857	0.00	0.00	37.83	3.77
574	575	3.763360	TGAATGATCCTTCGCAAATGGTT	59.237	39.130	6.29	0.00	0.00	3.67
575	576	3.355378	TGAATGATCCTTCGCAAATGGT	58.645	40.909	6.29	0.00	0.00	3.55
578	579	4.218200	TGTGTTGAATGATCCTTCGCAAAT	59.782	37.500	6.29	0.00	0.00	2.32
579	580	3.567585	TGTGTTGAATGATCCTTCGCAAA	59.432	39.130	6.29	1.39	0.00	3.68
581	582	2.777094	TGTGTTGAATGATCCTTCGCA	58.223	42.857	6.29	5.33	0.00	5.10
582	583	3.751621	CTTGTGTTGAATGATCCTTCGC	58.248	45.455	6.29	3.12	0.00	4.70
583	584	3.189080	TGCTTGTGTTGAATGATCCTTCG	59.811	43.478	6.29	0.00	0.00	3.79
584	585	4.771590	TGCTTGTGTTGAATGATCCTTC	57.228	40.909	3.95	3.95	0.00	3.46
585	586	5.337009	GGATTGCTTGTGTTGAATGATCCTT	60.337	40.000	0.00	0.00	0.00	3.36
587	588	4.427312	GGATTGCTTGTGTTGAATGATCC	58.573	43.478	0.00	0.00	0.00	3.36
588	589	4.159135	AGGGATTGCTTGTGTTGAATGATC	59.841	41.667	0.00	0.00	0.00	2.92
589	590	4.091549	AGGGATTGCTTGTGTTGAATGAT	58.908	39.130	0.00	0.00	0.00	2.45
591	592	3.367703	GGAGGGATTGCTTGTGTTGAATG	60.368	47.826	0.00	0.00	0.00	2.67
592	593	2.827921	GGAGGGATTGCTTGTGTTGAAT	59.172	45.455	0.00	0.00	0.00	2.57
595	596	0.890683	GGGAGGGATTGCTTGTGTTG	59.109	55.000	0.00	0.00	0.00	3.33
599	600	1.077663	ACATTGGGAGGGATTGCTTGT	59.922	47.619	0.00	0.00	0.00	3.16
600	601	1.856629	ACATTGGGAGGGATTGCTTG	58.143	50.000	0.00	0.00	0.00	4.01
601	602	2.629017	AACATTGGGAGGGATTGCTT	57.371	45.000	0.00	0.00	0.00	3.91
603	604	3.493176	GCATAAACATTGGGAGGGATTGC	60.493	47.826	0.00	0.00	0.00	3.56
604	605	3.962718	AGCATAAACATTGGGAGGGATTG	59.037	43.478	0.00	0.00	0.00	2.67
606	607	3.748668	CGAGCATAAACATTGGGAGGGAT	60.749	47.826	0.00	0.00	0.00	3.85
607	608	2.421388	CGAGCATAAACATTGGGAGGGA	60.421	50.000	0.00	0.00	0.00	4.20
608	609	1.949525	CGAGCATAAACATTGGGAGGG	59.050	52.381	0.00	0.00	0.00	4.30
609	610	1.949525	CCGAGCATAAACATTGGGAGG	59.050	52.381	0.00	0.00	0.00	4.30
610	611	2.874701	CTCCGAGCATAAACATTGGGAG	59.125	50.000	0.00	0.00	34.47	4.30
611	612	2.503765	TCTCCGAGCATAAACATTGGGA	59.496	45.455	0.00	0.00	0.00	4.37
612	613	2.614057	GTCTCCGAGCATAAACATTGGG	59.386	50.000	0.00	0.00	0.00	4.12
614	615	3.186909	TCGTCTCCGAGCATAAACATTG	58.813	45.455	0.00	0.00	38.40	2.82
615	616	3.520290	TCGTCTCCGAGCATAAACATT	57.480	42.857	0.00	0.00	38.40	2.71
619	620	3.146618	GAGTTCGTCTCCGAGCATAAA	57.853	47.619	2.04	0.00	45.50	1.40
629	630	2.255430	ACGAGGTGGAGTTCGTCTC	58.745	57.895	0.00	2.71	46.07	3.36
630	631	4.496429	ACGAGGTGGAGTTCGTCT	57.504	55.556	0.00	0.00	46.07	4.18
633	634	0.109689	GACTGACGAGGTGGAGTTCG	60.110	60.000	0.00	0.00	42.26	3.95
637	638	0.322997	AGGAGACTGACGAGGTGGAG	60.323	60.000	0.00	0.00	41.13	3.86
647	648	1.076923	GGCGGGTAGAGGAGACTGA	60.077	63.158	0.00	0.00	44.43	3.41
727	728	5.620206	ACCCCTAAAAAGGCTTTGATTTTG	58.380	37.500	14.19	5.41	0.00	2.44
860	864	3.805422	GTGTCACAACTCCACGAATGTTA	59.195	43.478	0.00	0.00	0.00	2.41
861	865	2.612212	GTGTCACAACTCCACGAATGTT	59.388	45.455	0.00	0.00	0.00	2.71
918	2121	1.595794	GAAACTGACGCGACTGGAAAA	59.404	47.619	15.93	0.00	0.00	2.29
980	2183	4.179599	GAGGAGGGGGAGGGGGAG	62.180	77.778	0.00	0.00	0.00	4.30
1048	2251	1.137872	GGGTGAGATCGATGAGCTTGT	59.862	52.381	0.54	0.00	0.00	3.16
1055	2262	1.137675	TCAGCTTGGGTGAGATCGATG	59.862	52.381	0.54	0.00	35.04	3.84
1092	2299	0.381089	CGTACCTGATCCGGTCTGAC	59.619	60.000	12.63	4.95	38.49	3.51
1138	2345	0.179108	GGATCGGTGAAGAAGGTCGG	60.179	60.000	0.00	0.00	0.00	4.79
1365	2585	1.304962	TCGTAGAAGCCAGCCAGGA	60.305	57.895	0.00	0.00	41.22	3.86
1687	2932	1.074090	TTGGTCCTCCACCTCCACA	60.074	57.895	0.00	0.00	46.98	4.17
2103	3696	3.943381	CTCATAAAGGCTGACTGCATGAA	59.057	43.478	6.65	0.00	45.15	2.57
2104	3701	3.198417	TCTCATAAAGGCTGACTGCATGA	59.802	43.478	6.65	7.00	45.15	3.07
2126	3726	6.596497	GGATGAATTGCAATCCAATCAAAGTT	59.404	34.615	13.38	0.00	43.22	2.66
2305	4030	5.181056	ACGAATATGATGTCACTTGTGCAAA	59.819	36.000	0.00	0.00	0.00	3.68
2390	4363	4.935352	TGCTCCAAACTTAAAAGCATGT	57.065	36.364	0.00	0.00	38.01	3.21
2609	4590	8.995027	TGGGATGTTCTGCTAATAACATAATT	57.005	30.769	0.00	0.00	44.27	1.40
2610	4591	9.236006	GATGGGATGTTCTGCTAATAACATAAT	57.764	33.333	0.00	0.00	44.27	1.28
2632	4613	2.756207	TCAACAGCATCATTGTGGATGG	59.244	45.455	5.43	0.00	43.85	3.51
2682	4675	9.034544	GCACTTTTCTGTCAAAAATTGTCTAAT	57.965	29.630	0.00	0.00	33.64	1.73
2691	4684	6.266168	TCTGAAGCACTTTTCTGTCAAAAA	57.734	33.333	0.00	0.00	0.00	1.94
2705	4698	4.490743	GACTTCCTAGTCTTCTGAAGCAC	58.509	47.826	12.54	11.15	45.99	4.40
2911	8108	2.474410	AAGAGTTGAACATCGTCCCC	57.526	50.000	0.00	0.00	0.00	4.81
3041	8239	4.880164	ACACCCTACTAAGCTCCTGAATA	58.120	43.478	0.00	0.00	0.00	1.75
3239	8440	6.301169	ACAAGTACTTCCTCATTTCCTAGG	57.699	41.667	4.77	0.82	0.00	3.02
3255	8456	7.010552	CCATGCAGTCTCAATAAGTACAAGTAC	59.989	40.741	2.18	2.18	36.35	2.73
3501	8703	2.484264	AGCAGATAACAACACTTTCCGC	59.516	45.455	0.00	0.00	0.00	5.54

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.