AutoCloner

Multiple sequence alignment - TraesCS7B01G383000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G383000	chr7B	100.000	2936	0	0	1	2936	648721725	648718790	0.000000e+00	5422
1	TraesCS7B01G383000	chr7B	95.588	544	19	5	1	541	214991123	214990582	0.000000e+00	867
2	TraesCS7B01G383000	chr7B	95.091	550	23	4	1	548	393877806	393878353	0.000000e+00	863
3	TraesCS7B01G383000	chr7B	95.404	544	22	3	1	542	553190557	553190015	0.000000e+00	863
4	TraesCS7B01G383000	chr7B	99.644	281	1	0	663	943	648713645	648713365	5.610000e-142	514
5	TraesCS7B01G383000	chr5A	99.033	2275	20	2	663	2936	649442266	649444539	0.000000e+00	4078
6	TraesCS7B01G383000	chr7A	95.614	2280	77	11	663	2936	17110603	17112865	0.000000e+00	3635
7	TraesCS7B01G383000	chr1A	94.561	2280	112	11	663	2936	561407392	561405119	0.000000e+00	3513
8	TraesCS7B01G383000	chr1A	93.202	2280	137	13	663	2934	327713817	327711548	0.000000e+00	3336
9	TraesCS7B01G383000	chr2A	93.512	2281	114	18	663	2936	12904848	12902595	0.000000e+00	3362
10	TraesCS7B01G383000	chr2A	94.254	1984	92	10	961	2936	677222422	677220453	0.000000e+00	3013
11	TraesCS7B01G383000	chr2A	95.031	1469	64	8	1472	2936	70125564	70124101	0.000000e+00	2300
12	TraesCS7B01G383000	chr2A	93.064	793	52	3	662	1452	70134932	70134141	0.000000e+00	1157
13	TraesCS7B01G383000	chr4A	93.167	2283	110	16	664	2936	621705814	621708060	0.000000e+00	3310
14	TraesCS7B01G383000	chr4A	92.895	2280	104	22	663	2936	125038524	125036297	0.000000e+00	3260
15	TraesCS7B01G383000	chr4A	95.894	341	10	3	655	994	713599901	713600238	1.540000e-152	549
16	TraesCS7B01G383000	chr3D	94.199	1017	51	6	1924	2936	35718570	35719582	0.000000e+00	1544
17	TraesCS7B01G383000	chr6B	96.488	541	17	2	1	541	525999621	525999083	0.000000e+00	893
18	TraesCS7B01G383000	chr4B	96.488	541	15	3	1	541	495249904	495250440	0.000000e+00	891
19	TraesCS7B01G383000	chr4B	95.413	545	19	6	1	541	400370976	400370434	0.000000e+00	863
20	TraesCS7B01G383000	chr5B	95.941	542	20	2	1	541	652881156	652880616	0.000000e+00	878
21	TraesCS7B01G383000	chr5B	95.387	542	21	4	3	542	467088543	467088004	0.000000e+00	859
22	TraesCS7B01G383000	chr3B	95.396	543	22	3	1	541	826554803	826554262	0.000000e+00	861

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G383000	chr7B	648718790	648721725	2935	True	5422	5422	100.000	1	2936	1	chr7B.!!$R4	2935
1	TraesCS7B01G383000	chr7B	214990582	214991123	541	True	867	867	95.588	1	541	1	chr7B.!!$R1	540
2	TraesCS7B01G383000	chr7B	393877806	393878353	547	False	863	863	95.091	1	548	1	chr7B.!!$F1	547
3	TraesCS7B01G383000	chr7B	553190015	553190557	542	True	863	863	95.404	1	542	1	chr7B.!!$R2	541
4	TraesCS7B01G383000	chr5A	649442266	649444539	2273	False	4078	4078	99.033	663	2936	1	chr5A.!!$F1	2273
5	TraesCS7B01G383000	chr7A	17110603	17112865	2262	False	3635	3635	95.614	663	2936	1	chr7A.!!$F1	2273
6	TraesCS7B01G383000	chr1A	561405119	561407392	2273	True	3513	3513	94.561	663	2936	1	chr1A.!!$R2	2273
7	TraesCS7B01G383000	chr1A	327711548	327713817	2269	True	3336	3336	93.202	663	2934	1	chr1A.!!$R1	2271
8	TraesCS7B01G383000	chr2A	12902595	12904848	2253	True	3362	3362	93.512	663	2936	1	chr2A.!!$R1	2273
9	TraesCS7B01G383000	chr2A	677220453	677222422	1969	True	3013	3013	94.254	961	2936	1	chr2A.!!$R4	1975
10	TraesCS7B01G383000	chr2A	70124101	70125564	1463	True	2300	2300	95.031	1472	2936	1	chr2A.!!$R2	1464
11	TraesCS7B01G383000	chr2A	70134141	70134932	791	True	1157	1157	93.064	662	1452	1	chr2A.!!$R3	790
12	TraesCS7B01G383000	chr4A	621705814	621708060	2246	False	3310	3310	93.167	664	2936	1	chr4A.!!$F1	2272
13	TraesCS7B01G383000	chr4A	125036297	125038524	2227	True	3260	3260	92.895	663	2936	1	chr4A.!!$R1	2273
14	TraesCS7B01G383000	chr3D	35718570	35719582	1012	False	1544	1544	94.199	1924	2936	1	chr3D.!!$F1	1012
15	TraesCS7B01G383000	chr6B	525999083	525999621	538	True	893	893	96.488	1	541	1	chr6B.!!$R1	540
16	TraesCS7B01G383000	chr4B	495249904	495250440	536	False	891	891	96.488	1	541	1	chr4B.!!$F1	540
17	TraesCS7B01G383000	chr4B	400370434	400370976	542	True	863	863	95.413	1	541	1	chr4B.!!$R1	540
18	TraesCS7B01G383000	chr5B	652880616	652881156	540	True	878	878	95.941	1	541	1	chr5B.!!$R2	540
19	TraesCS7B01G383000	chr5B	467088004	467088543	539	True	859	859	95.387	3	542	1	chr5B.!!$R1	539
20	TraesCS7B01G383000	chr3B	826554262	826554803	541	True	861	861	95.396	1	541	1	chr3B.!!$R1	540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
638	644	0.249741	CTCGGTGTCGGTCCACTTTT	60.25	55.0	0.0	0.0	35.63	2.27	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2422	2496	1.951209	TGCCTCATCTACCCTGTGAA	58.049	50.0	0.0	0.0	0.0	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
224	225	3.437213	TCGACTACTGGAGGGAATTTGA	58.563	45.455	0.00	0.00	0.00	2.69
411	413	2.743718	CACCTCAGACGGCCTGTT	59.256	61.111	0.00	0.00	43.38	3.16
435	437	4.096682	GTCTCGTGCTTGTAATACTCCTCT	59.903	45.833	0.00	0.00	0.00	3.69
480	483	0.382515	CCGTGGTTTTCTTCCGCAAA	59.617	50.000	0.00	0.00	35.45	3.68
502	508	4.640364	AGGTTTCCACGTAAAAATCCGTA	58.360	39.130	0.00	0.00	35.16	4.02
510	516	6.875195	TCCACGTAAAAATCCGTATCTCTTTT	59.125	34.615	0.00	0.00	35.16	2.27
547	553	9.745880	TTTCTCATTATTATCTAACACGAGTCC	57.254	33.333	0.00	0.00	0.00	3.85
548	554	8.693120	TCTCATTATTATCTAACACGAGTCCT	57.307	34.615	0.00	0.00	0.00	3.85
549	555	8.568794	TCTCATTATTATCTAACACGAGTCCTG	58.431	37.037	0.00	0.00	0.00	3.86
550	556	7.658261	TCATTATTATCTAACACGAGTCCTGG	58.342	38.462	0.00	0.00	0.00	4.45
551	557	7.287005	TCATTATTATCTAACACGAGTCCTGGT	59.713	37.037	0.00	0.00	0.00	4.00
552	558	5.934402	ATTATCTAACACGAGTCCTGGTT	57.066	39.130	0.00	0.00	0.00	3.67
553	559	3.870633	ATCTAACACGAGTCCTGGTTC	57.129	47.619	0.00	0.00	0.00	3.62
554	560	2.872732	TCTAACACGAGTCCTGGTTCT	58.127	47.619	0.00	0.00	0.00	3.01
555	561	2.818432	TCTAACACGAGTCCTGGTTCTC	59.182	50.000	10.10	10.10	0.00	2.87
556	562	1.410004	AACACGAGTCCTGGTTCTCA	58.590	50.000	16.73	0.00	0.00	3.27
557	563	1.633774	ACACGAGTCCTGGTTCTCAT	58.366	50.000	16.73	4.25	0.00	2.90
558	564	1.971357	ACACGAGTCCTGGTTCTCATT	59.029	47.619	16.73	5.34	0.00	2.57
559	565	2.368875	ACACGAGTCCTGGTTCTCATTT	59.631	45.455	16.73	0.00	0.00	2.32
560	566	3.181454	ACACGAGTCCTGGTTCTCATTTT	60.181	43.478	16.73	1.83	0.00	1.82
561	567	3.815401	CACGAGTCCTGGTTCTCATTTTT	59.185	43.478	16.73	0.11	0.00	1.94
562	568	4.994852	CACGAGTCCTGGTTCTCATTTTTA	59.005	41.667	16.73	0.00	0.00	1.52
563	569	5.643777	CACGAGTCCTGGTTCTCATTTTTAT	59.356	40.000	16.73	0.00	0.00	1.40
564	570	6.149474	CACGAGTCCTGGTTCTCATTTTTATT	59.851	38.462	16.73	0.00	0.00	1.40
565	571	7.333423	CACGAGTCCTGGTTCTCATTTTTATTA	59.667	37.037	16.73	0.00	0.00	0.98
566	572	7.549488	ACGAGTCCTGGTTCTCATTTTTATTAG	59.451	37.037	16.73	4.57	0.00	1.73
567	573	7.466050	CGAGTCCTGGTTCTCATTTTTATTAGC	60.466	40.741	16.73	0.00	0.00	3.09
568	574	7.175104	AGTCCTGGTTCTCATTTTTATTAGCA	58.825	34.615	0.00	0.00	0.00	3.49
569	575	7.121315	AGTCCTGGTTCTCATTTTTATTAGCAC	59.879	37.037	0.00	0.00	0.00	4.40
570	576	6.093495	TCCTGGTTCTCATTTTTATTAGCACG	59.907	38.462	0.00	0.00	0.00	5.34
571	577	6.189677	TGGTTCTCATTTTTATTAGCACGG	57.810	37.500	0.00	0.00	0.00	4.94
572	578	5.941058	TGGTTCTCATTTTTATTAGCACGGA	59.059	36.000	0.00	0.00	0.00	4.69
573	579	6.128117	TGGTTCTCATTTTTATTAGCACGGAC	60.128	38.462	0.00	0.00	0.00	4.79
574	580	6.128117	GGTTCTCATTTTTATTAGCACGGACA	60.128	38.462	0.00	0.00	0.00	4.02
575	581	6.662414	TCTCATTTTTATTAGCACGGACAG	57.338	37.500	0.00	0.00	0.00	3.51
576	582	5.584649	TCTCATTTTTATTAGCACGGACAGG	59.415	40.000	0.00	0.00	0.00	4.00
577	583	4.095782	TCATTTTTATTAGCACGGACAGGC	59.904	41.667	0.00	0.00	0.00	4.85
578	584	2.032680	TTTATTAGCACGGACAGGCC	57.967	50.000	0.00	0.00	0.00	5.19
587	593	4.699522	GGACAGGCCGGTTTCGCT	62.700	66.667	10.75	0.00	34.56	4.93
588	594	2.668550	GACAGGCCGGTTTCGCTT	60.669	61.111	10.75	0.00	34.56	4.68
589	595	2.966309	GACAGGCCGGTTTCGCTTG	61.966	63.158	10.75	0.00	34.56	4.01
590	596	2.978010	CAGGCCGGTTTCGCTTGT	60.978	61.111	1.90	0.00	34.56	3.16
591	597	2.668550	AGGCCGGTTTCGCTTGTC	60.669	61.111	1.90	0.00	34.56	3.18
592	598	2.975799	GGCCGGTTTCGCTTGTCA	60.976	61.111	1.90	0.00	34.56	3.58
593	599	2.556287	GCCGGTTTCGCTTGTCAG	59.444	61.111	1.90	0.00	34.56	3.51
594	600	1.959226	GCCGGTTTCGCTTGTCAGA	60.959	57.895	1.90	0.00	34.56	3.27
595	601	1.901650	GCCGGTTTCGCTTGTCAGAG	61.902	60.000	1.90	0.00	34.56	3.35
596	602	1.493311	CGGTTTCGCTTGTCAGAGC	59.507	57.895	0.00	0.00	39.29	4.09
602	608	3.698382	GCTTGTCAGAGCGATCGG	58.302	61.111	18.30	0.00	32.23	4.18
603	609	1.153745	GCTTGTCAGAGCGATCGGT	60.154	57.895	21.42	21.42	32.23	4.69
604	610	1.142778	GCTTGTCAGAGCGATCGGTC	61.143	60.000	33.88	33.88	42.36	4.79
611	617	3.369701	GAGCGATCGGTCTCATACG	57.630	57.895	33.64	0.00	39.31	3.06
612	618	0.866427	GAGCGATCGGTCTCATACGA	59.134	55.000	33.64	0.00	43.85	3.43
613	619	0.869068	AGCGATCGGTCTCATACGAG	59.131	55.000	15.21	0.00	42.89	4.18
614	620	0.587285	GCGATCGGTCTCATACGAGT	59.413	55.000	18.30	0.00	42.89	4.18
615	621	1.398705	GCGATCGGTCTCATACGAGTC	60.399	57.143	18.30	0.00	42.89	3.36
616	622	1.194997	CGATCGGTCTCATACGAGTCC	59.805	57.143	7.38	0.00	42.89	3.85
617	623	1.536331	GATCGGTCTCATACGAGTCCC	59.464	57.143	0.00	0.00	42.56	4.46
618	624	0.812811	TCGGTCTCATACGAGTCCCG	60.813	60.000	11.60	11.60	46.71	5.14
619	625	1.359475	GGTCTCATACGAGTCCCGC	59.641	63.158	0.00	0.00	40.45	6.13
620	626	1.102222	GGTCTCATACGAGTCCCGCT	61.102	60.000	0.00	0.00	40.45	5.52
621	627	0.308376	GTCTCATACGAGTCCCGCTC	59.692	60.000	0.00	0.00	43.32	5.03
628	634	4.477975	GAGTCCCGCTCGGTGTCG	62.478	72.222	7.59	0.00	34.13	4.35
635	641	3.681835	GCTCGGTGTCGGTCCACT	61.682	66.667	0.00	0.00	35.63	4.00
636	642	3.048602	CTCGGTGTCGGTCCACTT	58.951	61.111	0.00	0.00	35.63	3.16
637	643	1.366366	CTCGGTGTCGGTCCACTTT	59.634	57.895	0.00	0.00	35.63	2.66
638	644	0.249741	CTCGGTGTCGGTCCACTTTT	60.250	55.000	0.00	0.00	35.63	2.27
639	645	1.000060	CTCGGTGTCGGTCCACTTTTA	60.000	52.381	0.00	0.00	35.63	1.52
640	646	1.142474	CGGTGTCGGTCCACTTTTAC	58.858	55.000	0.00	0.00	35.63	2.01
641	647	1.516161	GGTGTCGGTCCACTTTTACC	58.484	55.000	0.00	0.00	35.63	2.85
642	648	1.202675	GGTGTCGGTCCACTTTTACCA	60.203	52.381	0.00	0.00	35.35	3.25
643	649	1.869132	GTGTCGGTCCACTTTTACCAC	59.131	52.381	0.00	0.00	35.35	4.16
644	650	1.764134	TGTCGGTCCACTTTTACCACT	59.236	47.619	0.00	0.00	35.35	4.00
645	651	2.224113	TGTCGGTCCACTTTTACCACTC	60.224	50.000	0.00	0.00	35.35	3.51
646	652	1.345415	TCGGTCCACTTTTACCACTCC	59.655	52.381	0.00	0.00	35.35	3.85
647	653	1.804601	GGTCCACTTTTACCACTCCG	58.195	55.000	0.00	0.00	35.73	4.63
648	654	1.154197	GTCCACTTTTACCACTCCGC	58.846	55.000	0.00	0.00	0.00	5.54
649	655	1.053424	TCCACTTTTACCACTCCGCT	58.947	50.000	0.00	0.00	0.00	5.52
650	656	2.028748	GTCCACTTTTACCACTCCGCTA	60.029	50.000	0.00	0.00	0.00	4.26
651	657	2.232941	TCCACTTTTACCACTCCGCTAG	59.767	50.000	0.00	0.00	0.00	3.42
652	658	2.232941	CCACTTTTACCACTCCGCTAGA	59.767	50.000	0.00	0.00	0.00	2.43
653	659	3.251571	CACTTTTACCACTCCGCTAGAC	58.748	50.000	0.00	0.00	0.00	2.59
654	660	2.895404	ACTTTTACCACTCCGCTAGACA	59.105	45.455	0.00	0.00	0.00	3.41
655	661	3.322828	ACTTTTACCACTCCGCTAGACAA	59.677	43.478	0.00	0.00	0.00	3.18
656	662	4.020485	ACTTTTACCACTCCGCTAGACAAT	60.020	41.667	0.00	0.00	0.00	2.71
657	663	5.186409	ACTTTTACCACTCCGCTAGACAATA	59.814	40.000	0.00	0.00	0.00	1.90
658	664	5.664294	TTTACCACTCCGCTAGACAATAA	57.336	39.130	0.00	0.00	0.00	1.40
659	665	5.864418	TTACCACTCCGCTAGACAATAAT	57.136	39.130	0.00	0.00	0.00	1.28
660	666	4.060038	ACCACTCCGCTAGACAATAATG	57.940	45.455	0.00	0.00	0.00	1.90
1739	1800	1.606601	CGACACCACCTCCTCCTCA	60.607	63.158	0.00	0.00	0.00	3.86
2866	2943	6.816140	AGCTATACTTCAGAACTTTGCTCTTC	59.184	38.462	0.00	0.00	0.00	2.87

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
162	163	6.096705	CCATCCAAATCAGCATAAACACCTTA	59.903	38.462	0.00	0.00	0.00	2.69
274	275	4.202245	ACCGGTTGTACTACGTCTAGTA	57.798	45.455	0.00	0.00	34.79	1.82
411	413	3.762288	AGGAGTATTACAAGCACGAGACA	59.238	43.478	0.00	0.00	0.00	3.41
435	437	1.933181	CGAAGGCGCAATCACTATGAA	59.067	47.619	10.83	0.00	0.00	2.57
480	483	3.479489	ACGGATTTTTACGTGGAAACCT	58.521	40.909	0.00	0.00	42.39	3.50
527	533	7.598759	ACCAGGACTCGTGTTAGATAATAAT	57.401	36.000	0.00	0.00	0.00	1.28
542	548	7.336931	TGCTAATAAAAATGAGAACCAGGACTC	59.663	37.037	0.00	2.32	0.00	3.36
544	550	7.251281	GTGCTAATAAAAATGAGAACCAGGAC	58.749	38.462	0.00	0.00	0.00	3.85
545	551	6.093495	CGTGCTAATAAAAATGAGAACCAGGA	59.907	38.462	0.00	0.00	0.00	3.86
547	553	6.093495	TCCGTGCTAATAAAAATGAGAACCAG	59.907	38.462	0.00	0.00	0.00	4.00
548	554	5.941058	TCCGTGCTAATAAAAATGAGAACCA	59.059	36.000	0.00	0.00	0.00	3.67
549	555	6.128117	TGTCCGTGCTAATAAAAATGAGAACC	60.128	38.462	0.00	0.00	0.00	3.62
550	556	6.837992	TGTCCGTGCTAATAAAAATGAGAAC	58.162	36.000	0.00	0.00	0.00	3.01
551	557	6.093495	CCTGTCCGTGCTAATAAAAATGAGAA	59.907	38.462	0.00	0.00	0.00	2.87
552	558	5.584649	CCTGTCCGTGCTAATAAAAATGAGA	59.415	40.000	0.00	0.00	0.00	3.27
553	559	5.730568	GCCTGTCCGTGCTAATAAAAATGAG	60.731	44.000	0.00	0.00	0.00	2.90
554	560	4.095782	GCCTGTCCGTGCTAATAAAAATGA	59.904	41.667	0.00	0.00	0.00	2.57
555	561	4.351192	GCCTGTCCGTGCTAATAAAAATG	58.649	43.478	0.00	0.00	0.00	2.32
556	562	3.380320	GGCCTGTCCGTGCTAATAAAAAT	59.620	43.478	0.00	0.00	0.00	1.82
557	563	2.750712	GGCCTGTCCGTGCTAATAAAAA	59.249	45.455	0.00	0.00	0.00	1.94
558	564	2.361789	GGCCTGTCCGTGCTAATAAAA	58.638	47.619	0.00	0.00	0.00	1.52
559	565	2.032680	GGCCTGTCCGTGCTAATAAA	57.967	50.000	0.00	0.00	0.00	1.40
560	566	3.772619	GGCCTGTCCGTGCTAATAA	57.227	52.632	0.00	0.00	0.00	1.40
570	576	4.699522	AGCGAAACCGGCCTGTCC	62.700	66.667	0.00	0.00	0.00	4.02
571	577	2.668550	AAGCGAAACCGGCCTGTC	60.669	61.111	0.00	0.00	0.00	3.51
572	578	2.978010	CAAGCGAAACCGGCCTGT	60.978	61.111	0.00	0.00	0.00	4.00
573	579	2.966309	GACAAGCGAAACCGGCCTG	61.966	63.158	0.00	0.00	0.00	4.85
574	580	2.668550	GACAAGCGAAACCGGCCT	60.669	61.111	0.00	0.00	0.00	5.19
575	581	2.966309	CTGACAAGCGAAACCGGCC	61.966	63.158	0.00	0.00	0.00	6.13
576	582	1.901650	CTCTGACAAGCGAAACCGGC	61.902	60.000	0.00	0.00	0.00	6.13
577	583	1.901650	GCTCTGACAAGCGAAACCGG	61.902	60.000	0.00	0.00	31.56	5.28
578	584	1.493311	GCTCTGACAAGCGAAACCG	59.507	57.895	0.00	0.00	31.56	4.44
585	591	1.142778	GACCGATCGCTCTGACAAGC	61.143	60.000	10.32	1.01	38.97	4.01
586	592	0.453793	AGACCGATCGCTCTGACAAG	59.546	55.000	12.07	0.00	0.00	3.16
587	593	0.452184	GAGACCGATCGCTCTGACAA	59.548	55.000	17.38	0.00	0.00	3.18
588	594	0.676782	TGAGACCGATCGCTCTGACA	60.677	55.000	17.38	7.58	32.44	3.58
589	595	0.665835	ATGAGACCGATCGCTCTGAC	59.334	55.000	17.38	5.09	32.44	3.51
590	596	1.874231	GTATGAGACCGATCGCTCTGA	59.126	52.381	17.38	9.83	32.44	3.27
591	597	1.399087	CGTATGAGACCGATCGCTCTG	60.399	57.143	17.38	2.53	32.44	3.35
592	598	0.869068	CGTATGAGACCGATCGCTCT	59.131	55.000	12.67	12.67	32.44	4.09
593	599	0.866427	TCGTATGAGACCGATCGCTC	59.134	55.000	10.32	12.46	0.00	5.03
594	600	0.869068	CTCGTATGAGACCGATCGCT	59.131	55.000	10.32	1.58	45.57	4.93
595	601	0.587285	ACTCGTATGAGACCGATCGC	59.413	55.000	18.95	0.00	45.57	4.58
596	602	1.194997	GGACTCGTATGAGACCGATCG	59.805	57.143	18.95	8.51	44.90	3.69
597	603	2.973419	GGACTCGTATGAGACCGATC	57.027	55.000	18.95	5.07	44.90	3.69
602	608	0.308376	GAGCGGGACTCGTATGAGAC	59.692	60.000	18.95	12.17	45.57	3.36
603	609	2.704108	GAGCGGGACTCGTATGAGA	58.296	57.895	18.95	0.00	45.57	3.27
611	617	4.477975	CGACACCGAGCGGGACTC	62.478	72.222	14.07	3.61	42.47	3.36
618	624	2.710724	AAAGTGGACCGACACCGAGC	62.711	60.000	0.00	0.00	42.28	5.03
619	625	0.249741	AAAAGTGGACCGACACCGAG	60.250	55.000	0.00	0.00	42.28	4.63
620	626	1.039068	TAAAAGTGGACCGACACCGA	58.961	50.000	0.00	0.00	42.28	4.69
621	627	1.142474	GTAAAAGTGGACCGACACCG	58.858	55.000	0.00	0.00	42.28	4.94
622	628	1.202675	TGGTAAAAGTGGACCGACACC	60.203	52.381	0.00	0.00	42.28	4.16
623	629	1.869132	GTGGTAAAAGTGGACCGACAC	59.131	52.381	0.00	0.00	38.69	3.67
624	630	1.764134	AGTGGTAAAAGTGGACCGACA	59.236	47.619	0.00	0.00	38.69	4.35
625	631	2.410939	GAGTGGTAAAAGTGGACCGAC	58.589	52.381	0.00	0.00	38.69	4.79
626	632	1.345415	GGAGTGGTAAAAGTGGACCGA	59.655	52.381	0.00	0.00	38.69	4.69
627	633	1.804601	GGAGTGGTAAAAGTGGACCG	58.195	55.000	0.00	0.00	38.69	4.79
628	634	1.804601	CGGAGTGGTAAAAGTGGACC	58.195	55.000	0.00	0.00	36.17	4.46
629	635	1.154197	GCGGAGTGGTAAAAGTGGAC	58.846	55.000	0.00	0.00	0.00	4.02
630	636	1.053424	AGCGGAGTGGTAAAAGTGGA	58.947	50.000	0.00	0.00	0.00	4.02
631	637	2.232941	TCTAGCGGAGTGGTAAAAGTGG	59.767	50.000	0.00	0.00	0.00	4.00
632	638	3.251571	GTCTAGCGGAGTGGTAAAAGTG	58.748	50.000	0.00	0.00	0.00	3.16
633	639	2.895404	TGTCTAGCGGAGTGGTAAAAGT	59.105	45.455	0.00	0.00	0.00	2.66
634	640	3.587797	TGTCTAGCGGAGTGGTAAAAG	57.412	47.619	0.00	0.00	0.00	2.27
635	641	4.546829	ATTGTCTAGCGGAGTGGTAAAA	57.453	40.909	0.00	0.00	0.00	1.52
636	642	5.664294	TTATTGTCTAGCGGAGTGGTAAA	57.336	39.130	0.00	0.00	0.00	2.01
637	643	5.597806	CATTATTGTCTAGCGGAGTGGTAA	58.402	41.667	0.00	0.00	0.00	2.85
638	644	4.500887	GCATTATTGTCTAGCGGAGTGGTA	60.501	45.833	0.00	0.00	0.00	3.25
639	645	3.741388	GCATTATTGTCTAGCGGAGTGGT	60.741	47.826	0.00	0.00	0.00	4.16
640	646	2.802816	GCATTATTGTCTAGCGGAGTGG	59.197	50.000	0.00	0.00	0.00	4.00
641	647	3.492383	CAGCATTATTGTCTAGCGGAGTG	59.508	47.826	0.00	0.00	0.00	3.51
642	648	3.133003	ACAGCATTATTGTCTAGCGGAGT	59.867	43.478	0.00	0.00	0.00	3.85
643	649	3.722147	ACAGCATTATTGTCTAGCGGAG	58.278	45.455	0.00	0.00	0.00	4.63
644	650	3.819564	ACAGCATTATTGTCTAGCGGA	57.180	42.857	0.00	0.00	0.00	5.54
645	651	4.449068	CCTAACAGCATTATTGTCTAGCGG	59.551	45.833	0.00	0.00	0.00	5.52
646	652	5.289595	TCCTAACAGCATTATTGTCTAGCG	58.710	41.667	0.00	0.00	0.00	4.26
647	653	7.736447	ATTCCTAACAGCATTATTGTCTAGC	57.264	36.000	0.00	0.00	0.00	3.42
910	938	8.587111	GTGAAAAAGTGATTTTGACAGAAGTTC	58.413	33.333	0.00	0.00	42.50	3.01
911	939	8.306761	AGTGAAAAAGTGATTTTGACAGAAGTT	58.693	29.630	6.15	0.00	44.52	2.66
920	948	8.168681	ACGTGTAAAGTGAAAAAGTGATTTTG	57.831	30.769	0.00	0.00	41.27	2.44
1447	1475	2.668632	CACACAGTACGGGGGCAT	59.331	61.111	0.00	0.00	0.00	4.40
2422	2496	1.951209	TGCCTCATCTACCCTGTGAA	58.049	50.000	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.