Multiple sequence alignment - TraesCS7B01G382700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G382700 chr7B 100.000 5418 0 0 1 5418 648660724 648655307 0.000000e+00 10006.0
1 TraesCS7B01G382700 chr7B 78.055 401 63 11 3423 3813 683437218 683436833 4.220000e-56 230.0
2 TraesCS7B01G382700 chr7B 76.790 405 67 16 3423 3816 327460196 327459808 9.200000e-48 202.0
3 TraesCS7B01G382700 chr7B 93.269 104 5 2 702 804 162120910 162120808 9.400000e-33 152.0
4 TraesCS7B01G382700 chr7B 88.372 86 8 1 4174 4259 648217622 648217705 9.600000e-18 102.0
5 TraesCS7B01G382700 chr7D 97.201 5430 110 18 4 5418 580850866 580845464 0.000000e+00 9147.0
6 TraesCS7B01G382700 chr7D 76.777 422 62 18 3417 3821 518051706 518051304 2.560000e-48 204.0
7 TraesCS7B01G382700 chr7A 93.466 1806 76 13 2388 4162 672858286 672856492 0.000000e+00 2643.0
8 TraesCS7B01G382700 chr7A 91.606 1644 122 9 757 2388 672859972 672858333 0.000000e+00 2257.0
9 TraesCS7B01G382700 chr7A 96.451 479 15 2 4153 4631 672856311 672855835 0.000000e+00 789.0
10 TraesCS7B01G382700 chr7A 80.198 404 57 9 3423 3817 662174924 662174535 1.150000e-71 281.0
11 TraesCS7B01G382700 chr1B 84.814 349 49 3 3474 3819 325982208 325981861 1.120000e-91 348.0
12 TraesCS7B01G382700 chr1B 77.451 408 65 13 3419 3813 186803369 186803762 9.140000e-53 219.0
13 TraesCS7B01G382700 chr1B 77.057 401 59 16 3435 3819 565853183 565853566 3.310000e-47 200.0
14 TraesCS7B01G382700 chr5D 82.337 368 44 15 3467 3821 197938377 197938736 3.170000e-77 300.0
15 TraesCS7B01G382700 chr5D 90.351 114 8 3 689 801 481427091 481427202 4.370000e-31 147.0
16 TraesCS7B01G382700 chr5D 93.000 100 6 1 702 801 139441014 139440916 1.570000e-30 145.0
17 TraesCS7B01G382700 chr4D 81.250 368 51 15 3467 3820 289823018 289823381 1.150000e-71 281.0
18 TraesCS7B01G382700 chr4D 94.175 103 4 2 704 805 414999659 414999558 7.270000e-34 156.0
19 TraesCS7B01G382700 chr6B 83.129 326 35 13 3423 3743 113769603 113769913 4.130000e-71 279.0
20 TraesCS7B01G382700 chr6D 79.236 419 55 17 3419 3821 461709606 461710008 4.160000e-66 263.0
21 TraesCS7B01G382700 chr6D 77.846 325 55 8 3423 3743 13204134 13203823 9.270000e-43 185.0
22 TraesCS7B01G382700 chr5A 79.830 352 56 9 3474 3813 438018523 438018871 5.420000e-60 243.0
23 TraesCS7B01G382700 chr5A 85.057 87 9 4 3680 3763 633037905 633037820 9.670000e-13 86.1
24 TraesCS7B01G382700 chr4A 76.923 416 69 15 3423 3824 743492959 743493361 1.530000e-50 211.0
25 TraesCS7B01G382700 chr1A 82.083 240 30 10 3474 3713 291994984 291995210 5.540000e-45 193.0
26 TraesCS7B01G382700 chr1A 97.619 84 1 1 69 152 557986952 557986870 5.660000e-30 143.0
27 TraesCS7B01G382700 chr1A 77.043 257 51 8 3490 3743 477540766 477541017 2.030000e-29 141.0
28 TraesCS7B01G382700 chr4B 94.118 102 5 1 704 805 511163805 511163705 2.610000e-33 154.0
29 TraesCS7B01G382700 chr3A 94.000 100 5 1 702 801 470095680 470095778 3.380000e-32 150.0
30 TraesCS7B01G382700 chr5B 93.878 98 5 1 704 801 166379086 166379182 4.370000e-31 147.0
31 TraesCS7B01G382700 chr5B 89.873 79 5 2 3680 3755 635621048 635620970 1.240000e-16 99.0
32 TraesCS7B01G382700 chr3B 93.000 100 6 1 702 801 450843912 450844010 1.570000e-30 145.0
33 TraesCS7B01G382700 chr3B 89.231 65 6 1 3737 3801 697081813 697081876 4.500000e-11 80.5
34 TraesCS7B01G382700 chr2B 92.857 84 3 2 69 152 574535835 574535755 9.530000e-23 119.0
35 TraesCS7B01G382700 chrUn 88.372 86 8 1 4174 4259 409488727 409488644 9.600000e-18 102.0
36 TraesCS7B01G382700 chrUn 88.372 86 8 1 4174 4259 415264524 415264607 9.600000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G382700 chr7B 648655307 648660724 5417 True 10006.000000 10006 100.000 1 5418 1 chr7B.!!$R3 5417
1 TraesCS7B01G382700 chr7D 580845464 580850866 5402 True 9147.000000 9147 97.201 4 5418 1 chr7D.!!$R2 5414
2 TraesCS7B01G382700 chr7A 672855835 672859972 4137 True 1896.333333 2643 93.841 757 4631 3 chr7A.!!$R2 3874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 1.794714 AGGTGCTGGGGTAGATGTAG 58.205 55.000 0.00 0.0 0.0 2.74 F
473 476 2.846206 TCCAGATCTATTGCAGGTTGGT 59.154 45.455 0.00 0.0 0.0 3.67 F
1364 1376 1.546029 CTGGAAGTGACATCTCGTGGA 59.454 52.381 0.00 0.0 0.0 4.02 F
1947 1960 0.389426 GGCATTTGGACAGCAGCAAG 60.389 55.000 0.00 0.0 0.0 4.01 F
3052 3115 2.629137 AGGTGCTGCAATGACAATGAAA 59.371 40.909 2.77 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 1201 0.680921 CCATCAGCGAATGGGTTGGT 60.681 55.000 11.42 0.00 42.19 3.67 R
1844 1857 2.229792 GAAACATGTCAGGGAGCAACA 58.770 47.619 0.00 0.00 0.00 3.33 R
3228 3316 2.017049 GTACAGTGATTCCATGGCCAC 58.983 52.381 8.16 18.21 0.00 5.01 R
3836 3928 3.118000 TGAAGAGCCATGATCATTCTGCT 60.118 43.478 19.04 19.04 0.00 4.24 R
5042 5322 0.965439 GCTGGATCCGATCTGTAGCT 59.035 55.000 7.39 0.00 32.29 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.737503 CCCTGAGCTTTTGGTGCTT 58.262 52.632 0.00 0.00 41.30 3.91
21 22 2.553028 CCCTGAGCTTTTGGTGCTTCTA 60.553 50.000 0.00 0.00 41.30 2.10
23 24 3.057946 CCTGAGCTTTTGGTGCTTCTAAC 60.058 47.826 0.00 0.00 41.30 2.34
33 34 8.856153 TTTTGGTGCTTCTAACATGTAGATTA 57.144 30.769 0.00 0.00 0.00 1.75
53 54 7.500992 AGATTATTCTTGAACGGATTAGAGCA 58.499 34.615 0.00 0.00 0.00 4.26
114 115 3.581265 ATCCCATGTGTGTCATATGCA 57.419 42.857 0.00 0.00 32.80 3.96
146 147 4.550076 ATCAGCTCCTGAAGGTATATGC 57.450 45.455 0.00 0.00 44.04 3.14
148 149 2.369860 CAGCTCCTGAAGGTATATGCCA 59.630 50.000 12.79 0.00 33.36 4.92
201 202 3.630625 ATAGGTGCTGGGGTAGATGTA 57.369 47.619 0.00 0.00 0.00 2.29
202 203 1.794714 AGGTGCTGGGGTAGATGTAG 58.205 55.000 0.00 0.00 0.00 2.74
209 210 6.183361 GGTGCTGGGGTAGATGTAGTATTTAA 60.183 42.308 0.00 0.00 0.00 1.52
213 214 7.525692 GCTGGGGTAGATGTAGTATTTAAGGAG 60.526 44.444 0.00 0.00 0.00 3.69
214 215 7.598248 TGGGGTAGATGTAGTATTTAAGGAGA 58.402 38.462 0.00 0.00 0.00 3.71
215 216 7.728981 TGGGGTAGATGTAGTATTTAAGGAGAG 59.271 40.741 0.00 0.00 0.00 3.20
244 245 7.488322 TGCTTTCAGTTTTGCATAAGTTTAGT 58.512 30.769 0.00 0.00 0.00 2.24
261 262 7.801716 AGTTTAGTCAGTTTCACTTATGCAA 57.198 32.000 0.00 0.00 0.00 4.08
277 278 8.725148 CACTTATGCAAAAGTTGAAGTCTCTAT 58.275 33.333 0.00 0.00 37.61 1.98
280 281 4.083855 TGCAAAAGTTGAAGTCTCTATGCG 60.084 41.667 0.00 0.00 33.00 4.73
322 323 9.750125 AATTTTAATTCTCTGAACAAGGTTGTC 57.250 29.630 0.00 0.00 41.31 3.18
323 324 8.519799 TTTTAATTCTCTGAACAAGGTTGTCT 57.480 30.769 0.00 0.00 41.31 3.41
324 325 9.621629 TTTTAATTCTCTGAACAAGGTTGTCTA 57.378 29.630 0.00 0.00 41.31 2.59
325 326 9.793259 TTTAATTCTCTGAACAAGGTTGTCTAT 57.207 29.630 0.00 0.00 41.31 1.98
326 327 7.678947 AATTCTCTGAACAAGGTTGTCTATG 57.321 36.000 0.00 0.00 41.31 2.23
327 328 5.808366 TCTCTGAACAAGGTTGTCTATGT 57.192 39.130 0.00 0.00 41.31 2.29
328 329 6.911250 TCTCTGAACAAGGTTGTCTATGTA 57.089 37.500 0.00 0.00 41.31 2.29
329 330 6.925211 TCTCTGAACAAGGTTGTCTATGTAG 58.075 40.000 0.00 0.00 41.31 2.74
330 331 6.493802 TCTCTGAACAAGGTTGTCTATGTAGT 59.506 38.462 0.00 0.00 41.31 2.73
331 332 7.668469 TCTCTGAACAAGGTTGTCTATGTAGTA 59.332 37.037 0.00 0.00 41.31 1.82
332 333 7.827701 TCTGAACAAGGTTGTCTATGTAGTAG 58.172 38.462 0.00 0.00 41.31 2.57
333 334 7.450634 TCTGAACAAGGTTGTCTATGTAGTAGT 59.549 37.037 0.00 0.00 41.31 2.73
334 335 7.959175 TGAACAAGGTTGTCTATGTAGTAGTT 58.041 34.615 0.00 0.00 41.31 2.24
335 336 7.870954 TGAACAAGGTTGTCTATGTAGTAGTTG 59.129 37.037 0.00 0.00 41.31 3.16
344 345 8.063200 TGTCTATGTAGTAGTTGTAGTTGCAT 57.937 34.615 0.00 0.00 0.00 3.96
375 376 2.949451 AGCACGGAACTAGACTGATG 57.051 50.000 0.00 0.00 0.00 3.07
426 429 3.587797 TTTTGGGTTGCACAAACGTTA 57.412 38.095 0.00 0.00 39.91 3.18
473 476 2.846206 TCCAGATCTATTGCAGGTTGGT 59.154 45.455 0.00 0.00 0.00 3.67
503 506 4.264083 ACTGAATCCATGGTGAAATCTGGT 60.264 41.667 12.58 5.38 0.00 4.00
506 509 6.434302 TGAATCCATGGTGAAATCTGGTATT 58.566 36.000 12.58 0.00 0.00 1.89
608 611 4.379082 GGCACAATAAAGACTACAAACCCG 60.379 45.833 0.00 0.00 0.00 5.28
681 684 8.918202 AAATGTAGAATGTCCAGTCTTGTTTA 57.082 30.769 2.30 0.00 37.01 2.01
755 758 6.910972 GCAGTTTTGAACTAAGGTTGAACTAC 59.089 38.462 0.00 0.00 40.46 2.73
775 778 4.281898 ACCCTTAGTGCAAAACTACGAT 57.718 40.909 0.00 0.00 41.21 3.73
934 946 8.116753 GTCTATCTTTTTGTTACATGTCCATCG 58.883 37.037 0.00 0.00 0.00 3.84
1364 1376 1.546029 CTGGAAGTGACATCTCGTGGA 59.454 52.381 0.00 0.00 0.00 4.02
1724 1736 4.379708 GGAAATCAACATTTTGCCAATGCC 60.380 41.667 5.78 0.00 31.94 4.40
1752 1764 5.118510 GCATCTGTTGTTTTTGGGTAAATCG 59.881 40.000 0.00 0.00 0.00 3.34
1769 1781 6.255020 GGTAAATCGTGTATCTTTGTCGACAT 59.745 38.462 20.80 6.87 33.55 3.06
1947 1960 0.389426 GGCATTTGGACAGCAGCAAG 60.389 55.000 0.00 0.00 0.00 4.01
1979 1992 2.930950 TCACAACTGAACTCTTTGGGG 58.069 47.619 0.00 0.00 0.00 4.96
2308 2324 3.446968 TGTAGCCCAGTTGTAGGTGTAT 58.553 45.455 0.00 0.00 0.00 2.29
2609 2672 3.269381 ACCTGCCCATTGATTCTTCCTTA 59.731 43.478 0.00 0.00 0.00 2.69
3052 3115 2.629137 AGGTGCTGCAATGACAATGAAA 59.371 40.909 2.77 0.00 0.00 2.69
3228 3316 4.156739 GCAAAGTACCAAGGAAATCCAGAG 59.843 45.833 1.67 0.00 38.89 3.35
3346 3434 9.703892 CTATCCTGTTGTAGATATCTGAAAAGG 57.296 37.037 20.34 20.34 30.81 3.11
3641 3732 4.285292 ACGTTACTATTCGGCACTATTCG 58.715 43.478 0.00 0.00 0.00 3.34
3675 3766 7.716799 TTGTTATTTTCATAGCCCACATTCT 57.283 32.000 0.00 0.00 0.00 2.40
3724 3816 3.838244 TGGCAATAGACATCACCCTAC 57.162 47.619 0.00 0.00 0.00 3.18
3836 3928 2.453212 TCCCCTATACTCAGGTGGCATA 59.547 50.000 0.00 0.00 33.44 3.14
3838 3930 2.234908 CCCTATACTCAGGTGGCATAGC 59.765 54.545 0.00 0.00 33.44 2.97
3871 3963 2.429610 GGCTCTTCACTCCATACCGTTA 59.570 50.000 0.00 0.00 0.00 3.18
4115 4207 2.515523 CGCTTGGGCTGGATGGAG 60.516 66.667 0.00 0.00 36.09 3.86
4290 4570 3.712907 TGGCGACTAACAGGGCCC 61.713 66.667 16.46 16.46 44.96 5.80
4309 4589 1.546323 CCTTTTCTTCTGCCAGGCTCA 60.546 52.381 14.15 0.00 0.00 4.26
4373 4653 1.797046 CATACTGCAGCGGCTTGATAG 59.203 52.381 15.27 0.61 41.91 2.08
4467 4747 1.834263 GAGGACAATGCCAGTAGGAGT 59.166 52.381 0.00 0.00 36.89 3.85
4478 4758 3.868754 GCCAGTAGGAGTGTTACTTTGGG 60.869 52.174 0.00 0.00 36.89 4.12
4528 4808 8.548721 CATTTAGTAAGGGTTATTAGAAGTGCG 58.451 37.037 0.00 0.00 0.00 5.34
4657 4937 2.045708 TGCCGTCCATTGCATGTCC 61.046 57.895 0.00 0.00 31.31 4.02
4850 5130 0.770557 AGGTACCAACAGGGCCAGAA 60.771 55.000 15.94 0.00 42.05 3.02
5028 5308 1.246056 CGTGGTACTCGTCTTCCCCA 61.246 60.000 0.00 0.00 40.68 4.96
5042 5322 2.739784 CCCACCATTGCCGCAAAA 59.260 55.556 10.42 0.00 0.00 2.44
5047 5327 0.243636 ACCATTGCCGCAAAAGCTAC 59.756 50.000 10.42 0.00 0.00 3.58
5179 5459 3.962718 CCAAATCAGGTCCCAAATGCTAT 59.037 43.478 0.00 0.00 0.00 2.97
5190 5470 5.239525 GTCCCAAATGCTATGGTCATTAGAC 59.760 44.000 2.99 0.00 44.21 2.59
5193 5473 5.471456 CCAAATGCTATGGTCATTAGACTCC 59.529 44.000 0.00 0.00 44.36 3.85
5236 5516 1.334243 GCTCTGATTCAGCAATGGAGC 59.666 52.381 8.89 8.01 37.33 4.70
5240 5520 2.068277 GATTCAGCAATGGAGCCCGC 62.068 60.000 0.00 0.00 34.23 6.13
5252 5532 1.173913 GAGCCCGCCAATTTGTAAGT 58.826 50.000 0.00 0.00 0.00 2.24
5263 5543 5.048013 GCCAATTTGTAAGTGCTCTTAACCT 60.048 40.000 9.70 0.00 37.81 3.50
5279 5559 7.856398 GCTCTTAACCTAGAAAACACTGTTTTC 59.144 37.037 28.82 28.82 38.36 2.29
5297 5577 1.378531 TCCTCGTAATGCCATGCAAC 58.621 50.000 0.00 0.00 43.62 4.17
5355 5635 0.955178 AGATCTCGTCCGCATCGAAT 59.045 50.000 0.00 0.00 36.89 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.565482 TGTTAGAAGCACCAAAAGCTCAG 59.435 43.478 0.00 0.00 42.53 3.35
8 9 7.759489 AATCTACATGTTAGAAGCACCAAAA 57.241 32.000 2.30 0.00 0.00 2.44
18 19 9.529325 CCGTTCAAGAATAATCTACATGTTAGA 57.471 33.333 2.30 5.59 33.77 2.10
21 22 8.964476 ATCCGTTCAAGAATAATCTACATGTT 57.036 30.769 2.30 0.00 33.77 2.71
33 34 8.562892 CATTTATGCTCTAATCCGTTCAAGAAT 58.437 33.333 0.00 0.00 0.00 2.40
114 115 4.592942 TCAGGAGCTGATTTGCACTATTT 58.407 39.130 0.00 0.00 35.39 1.40
178 179 3.116707 ACATCTACCCCAGCACCTATACT 60.117 47.826 0.00 0.00 0.00 2.12
196 197 7.988028 AGCAAACCTCTCCTTAAATACTACATC 59.012 37.037 0.00 0.00 0.00 3.06
201 202 7.231467 TGAAAGCAAACCTCTCCTTAAATACT 58.769 34.615 0.00 0.00 0.00 2.12
202 203 7.175119 ACTGAAAGCAAACCTCTCCTTAAATAC 59.825 37.037 0.00 0.00 37.60 1.89
209 210 3.584733 AACTGAAAGCAAACCTCTCCT 57.415 42.857 0.00 0.00 37.60 3.69
213 214 3.520569 TGCAAAACTGAAAGCAAACCTC 58.479 40.909 0.00 0.00 37.60 3.85
214 215 3.608316 TGCAAAACTGAAAGCAAACCT 57.392 38.095 0.00 0.00 37.60 3.50
215 216 5.523552 ACTTATGCAAAACTGAAAGCAAACC 59.476 36.000 0.00 0.00 40.76 3.27
261 262 4.449068 CACACGCATAGAGACTTCAACTTT 59.551 41.667 0.00 0.00 0.00 2.66
322 323 8.916654 GCATATGCAACTACAACTACTACATAG 58.083 37.037 22.84 0.00 41.59 2.23
323 324 8.812147 GCATATGCAACTACAACTACTACATA 57.188 34.615 22.84 0.00 41.59 2.29
324 325 7.715265 GCATATGCAACTACAACTACTACAT 57.285 36.000 22.84 0.00 41.59 2.29
344 345 5.468540 AGTTCCGTGCTAGATTATGCATA 57.531 39.130 1.16 1.16 41.45 3.14
361 362 4.951094 ACCACTCTACATCAGTCTAGTTCC 59.049 45.833 0.00 0.00 0.00 3.62
375 376 0.611340 AGGGGACGTGACCACTCTAC 60.611 60.000 0.00 0.00 39.87 2.59
426 429 4.286808 CCTGAATGGGAAAAGGAAACCAAT 59.713 41.667 0.00 0.00 36.44 3.16
506 509 7.498900 AGTGAACCAATGCTATTTGATAATCGA 59.501 33.333 0.00 0.00 0.00 3.59
644 647 7.176690 GGACATTCTACATTTTTCAAGAAGGGA 59.823 37.037 0.00 0.00 34.86 4.20
650 653 8.103948 AGACTGGACATTCTACATTTTTCAAG 57.896 34.615 0.00 0.00 0.00 3.02
755 758 4.092968 GTGATCGTAGTTTTGCACTAAGGG 59.907 45.833 0.00 0.00 39.86 3.95
775 778 5.015178 ACTCCCTCCAATCCAAAATAAGTGA 59.985 40.000 0.00 0.00 0.00 3.41
1189 1201 0.680921 CCATCAGCGAATGGGTTGGT 60.681 55.000 11.42 0.00 42.19 3.67
1724 1736 3.068590 ACCCAAAAACAACAGATGCAGAG 59.931 43.478 0.00 0.00 0.00 3.35
1752 1764 5.839262 TGACAATGTCGACAAAGATACAC 57.161 39.130 24.13 9.23 34.95 2.90
1844 1857 2.229792 GAAACATGTCAGGGAGCAACA 58.770 47.619 0.00 0.00 0.00 3.33
1947 1960 8.778358 AGAGTTCAGTTGTGAAATGATAGAAAC 58.222 33.333 0.00 0.00 44.44 2.78
2609 2672 7.173047 GGTCCTTGTTTATTTGATGTTGCAAAT 59.827 33.333 0.00 0.00 46.79 2.32
2747 2810 6.719365 AGTCGCATACTAAATCAATTGAAGC 58.281 36.000 13.09 5.96 36.36 3.86
3052 3115 3.058224 GCAGCAAAAGATAGTTTCGTGGT 60.058 43.478 0.00 0.00 0.00 4.16
3228 3316 2.017049 GTACAGTGATTCCATGGCCAC 58.983 52.381 8.16 18.21 0.00 5.01
3391 3479 5.865552 GCATAGTTAACTGGTTGACTTACGA 59.134 40.000 18.56 0.00 39.61 3.43
3392 3480 5.867716 AGCATAGTTAACTGGTTGACTTACG 59.132 40.000 18.56 6.62 39.61 3.18
3641 3732 8.758715 GGCTATGAAAATAACAAAATGAGCATC 58.241 33.333 0.00 0.00 0.00 3.91
3675 3766 8.877779 CAAAATTCCAAGTTCAAACACATTACA 58.122 29.630 0.00 0.00 0.00 2.41
3836 3928 3.118000 TGAAGAGCCATGATCATTCTGCT 60.118 43.478 19.04 19.04 0.00 4.24
3838 3930 4.452825 AGTGAAGAGCCATGATCATTCTG 58.547 43.478 5.16 0.00 0.00 3.02
4290 4570 1.901591 TGAGCCTGGCAGAAGAAAAG 58.098 50.000 22.65 0.00 0.00 2.27
4309 4589 5.359194 ACCGAGTGTTCCTATTGATTGAT 57.641 39.130 0.00 0.00 0.00 2.57
4373 4653 1.826385 ACAACAGCCACTCCAATAGC 58.174 50.000 0.00 0.00 0.00 2.97
4467 4747 3.139397 ACAATCAGTCCCCCAAAGTAACA 59.861 43.478 0.00 0.00 0.00 2.41
4668 4948 1.725973 GTTCAAAACCTGCGCTCGC 60.726 57.895 9.73 7.38 42.35 5.03
4850 5130 1.840635 GGGCCAAGATACTTCTCCTGT 59.159 52.381 4.39 0.00 0.00 4.00
5026 5306 2.028733 GCTTTTGCGGCAATGGTGG 61.029 57.895 17.19 6.42 34.86 4.61
5042 5322 0.965439 GCTGGATCCGATCTGTAGCT 59.035 55.000 7.39 0.00 32.29 3.32
5047 5327 1.411977 ACTTGAGCTGGATCCGATCTG 59.588 52.381 18.18 14.15 0.00 2.90
5179 5459 3.024547 CCTCGAAGGAGTCTAATGACCA 58.975 50.000 0.00 0.00 43.91 4.02
5236 5516 0.887933 AGCACTTACAAATTGGCGGG 59.112 50.000 0.00 0.00 0.00 6.13
5240 5520 6.575162 AGGTTAAGAGCACTTACAAATTGG 57.425 37.500 2.83 0.00 38.18 3.16
5252 5532 5.925509 ACAGTGTTTTCTAGGTTAAGAGCA 58.074 37.500 0.00 0.00 0.00 4.26
5263 5543 7.519328 GCATTACGAGGAAAACAGTGTTTTCTA 60.519 37.037 39.87 28.92 38.21 2.10
5279 5559 0.027979 CGTTGCATGGCATTACGAGG 59.972 55.000 16.96 6.72 42.85 4.63
5297 5577 2.320587 GCAGAAGTGGTGGACTGCG 61.321 63.158 0.00 0.00 44.27 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.