Multiple sequence alignment - TraesCS7B01G382300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G382300 chr7B 100.000 7811 0 0 1 7811 648103008 648110818 0.000000e+00 14425.0
1 TraesCS7B01G382300 chr7B 87.009 585 39 8 6948 7531 622523470 622522922 6.650000e-175 625.0
2 TraesCS7B01G382300 chr7B 94.688 320 16 1 7493 7811 622522842 622522523 5.440000e-136 496.0
3 TraesCS7B01G382300 chr7D 91.022 2250 130 39 3368 5554 580572721 580574961 0.000000e+00 2970.0
4 TraesCS7B01G382300 chr7D 86.240 2471 190 65 37 2385 580569313 580571755 0.000000e+00 2542.0
5 TraesCS7B01G382300 chr7D 92.644 1305 69 10 5620 6900 580574984 580576285 0.000000e+00 1853.0
6 TraesCS7B01G382300 chr7D 96.073 764 30 0 2403 3166 580571745 580572508 0.000000e+00 1245.0
7 TraesCS7B01G382300 chr7D 94.545 55 2 1 1 54 580569241 580569295 5.020000e-12 84.2
8 TraesCS7B01G382300 chr7A 93.270 1471 70 13 5502 6947 672074384 672075850 0.000000e+00 2141.0
9 TraesCS7B01G382300 chr7A 88.517 1733 114 35 724 2388 672069531 672071246 0.000000e+00 2019.0
10 TraesCS7B01G382300 chr7A 92.302 1299 68 18 3370 4640 672072200 672073494 0.000000e+00 1816.0
11 TraesCS7B01G382300 chr7A 95.550 764 34 0 2403 3166 672071233 672071996 0.000000e+00 1223.0
12 TraesCS7B01G382300 chr7A 96.022 729 24 2 4723 5450 672073671 672074395 0.000000e+00 1181.0
13 TraesCS7B01G382300 chr7A 80.193 207 19 15 1 185 672069320 672069526 1.370000e-27 135.0
14 TraesCS7B01G382300 chr6D 93.493 584 37 1 6948 7531 83157744 83157162 0.000000e+00 867.0
15 TraesCS7B01G382300 chr6D 93.528 309 17 3 7504 7811 83157048 83156742 2.570000e-124 457.0
16 TraesCS7B01G382300 chr6D 81.900 442 80 0 3694 4135 117417807 117417366 2.660000e-99 374.0
17 TraesCS7B01G382300 chr6D 82.938 211 30 4 5646 5853 117415855 117415648 1.340000e-42 185.0
18 TraesCS7B01G382300 chr1B 92.188 576 43 2 6955 7529 66926403 66925829 0.000000e+00 813.0
19 TraesCS7B01G382300 chr1B 95.513 312 14 0 7500 7811 66925634 66925323 4.210000e-137 499.0
20 TraesCS7B01G382300 chr1B 84.375 96 14 1 4195 4289 625772859 625772954 8.350000e-15 93.5
21 TraesCS7B01G382300 chr5D 90.753 584 52 2 6948 7531 520786673 520787254 0.000000e+00 778.0
22 TraesCS7B01G382300 chr5D 96.552 319 10 1 7493 7811 7032521 7032204 1.930000e-145 527.0
23 TraesCS7B01G382300 chr5D 88.679 424 44 4 6965 7386 3590259 3589838 1.500000e-141 514.0
24 TraesCS7B01G382300 chr3D 90.925 584 46 1 6948 7531 452585615 452586191 0.000000e+00 778.0
25 TraesCS7B01G382300 chr3D 97.070 273 8 0 7534 7806 488872171 488872443 1.990000e-125 460.0
26 TraesCS7B01G382300 chr1A 91.650 491 39 2 6947 7437 548464440 548463952 0.000000e+00 678.0
27 TraesCS7B01G382300 chr1A 93.711 318 15 4 7498 7811 548463783 548463467 9.170000e-129 472.0
28 TraesCS7B01G382300 chr1D 91.228 456 35 5 6948 7401 482003569 482003117 4.010000e-172 616.0
29 TraesCS7B01G382300 chr1D 96.855 318 9 1 7494 7811 481957616 481957932 1.490000e-146 531.0
30 TraesCS7B01G382300 chr1D 93.750 144 9 0 7388 7531 11677763 11677620 4.750000e-52 217.0
31 TraesCS7B01G382300 chr1D 90.385 104 9 1 7428 7531 482003031 482002929 1.370000e-27 135.0
32 TraesCS7B01G382300 chr3B 92.488 426 32 0 6945 7370 27246648 27246223 1.860000e-170 610.0
33 TraesCS7B01G382300 chr3B 86.179 123 10 5 7409 7531 27246218 27246103 8.230000e-25 126.0
34 TraesCS7B01G382300 chr4B 95.455 308 13 1 7504 7811 139542496 139542190 2.530000e-134 490.0
35 TraesCS7B01G382300 chr4B 84.022 557 37 23 6948 7502 139543632 139543126 9.110000e-134 488.0
36 TraesCS7B01G382300 chr5B 94.805 308 15 1 7504 7811 537903455 537903761 5.480000e-131 479.0
37 TraesCS7B01G382300 chr6B 81.144 472 89 0 3664 4135 207925772 207926243 5.720000e-101 379.0
38 TraesCS7B01G382300 chr6B 82.938 211 30 4 5646 5853 207927948 207928155 1.340000e-42 185.0
39 TraesCS7B01G382300 chr6A 80.085 472 94 0 3664 4135 146002462 146002933 1.250000e-92 351.0
40 TraesCS7B01G382300 chr6A 82.493 337 41 16 966 1299 146000642 146000963 5.970000e-71 279.0
41 TraesCS7B01G382300 chr6A 82.464 211 31 4 5646 5853 146004444 146004651 6.230000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G382300 chr7B 648103008 648110818 7810 False 14425.000000 14425 100.000000 1 7811 1 chr7B.!!$F1 7810
1 TraesCS7B01G382300 chr7B 622522523 622523470 947 True 560.500000 625 90.848500 6948 7811 2 chr7B.!!$R1 863
2 TraesCS7B01G382300 chr7D 580569241 580576285 7044 False 1738.840000 2970 92.104800 1 6900 5 chr7D.!!$F1 6899
3 TraesCS7B01G382300 chr7A 672069320 672075850 6530 False 1419.166667 2141 90.975667 1 6947 6 chr7A.!!$F1 6946
4 TraesCS7B01G382300 chr6D 83156742 83157744 1002 True 662.000000 867 93.510500 6948 7811 2 chr6D.!!$R1 863
5 TraesCS7B01G382300 chr6D 117415648 117417807 2159 True 279.500000 374 82.419000 3694 5853 2 chr6D.!!$R2 2159
6 TraesCS7B01G382300 chr1B 66925323 66926403 1080 True 656.000000 813 93.850500 6955 7811 2 chr1B.!!$R1 856
7 TraesCS7B01G382300 chr5D 520786673 520787254 581 False 778.000000 778 90.753000 6948 7531 1 chr5D.!!$F1 583
8 TraesCS7B01G382300 chr3D 452585615 452586191 576 False 778.000000 778 90.925000 6948 7531 1 chr3D.!!$F1 583
9 TraesCS7B01G382300 chr1A 548463467 548464440 973 True 575.000000 678 92.680500 6947 7811 2 chr1A.!!$R1 864
10 TraesCS7B01G382300 chr1D 482002929 482003569 640 True 375.500000 616 90.806500 6948 7531 2 chr1D.!!$R2 583
11 TraesCS7B01G382300 chr3B 27246103 27246648 545 True 368.000000 610 89.333500 6945 7531 2 chr3B.!!$R1 586
12 TraesCS7B01G382300 chr4B 139542190 139543632 1442 True 489.000000 490 89.738500 6948 7811 2 chr4B.!!$R1 863
13 TraesCS7B01G382300 chr6B 207925772 207928155 2383 False 282.000000 379 82.041000 3664 5853 2 chr6B.!!$F1 2189
14 TraesCS7B01G382300 chr6A 146000642 146004651 4009 False 270.000000 351 81.680667 966 5853 3 chr6A.!!$F1 4887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 367 0.178301 GACTTCCTCCATCCGGGTTC 59.822 60.000 0.00 0.0 38.11 3.62 F
747 813 0.518636 CCGCATGTTGACTTCCACAG 59.481 55.000 0.00 0.0 0.00 3.66 F
2330 2526 0.332972 CCCTCTTTTCCCCTTCCCTG 59.667 60.000 0.00 0.0 0.00 4.45 F
2388 2586 0.877743 GCCAAGTTCTGCTCCAGTTC 59.122 55.000 0.00 0.0 32.61 3.01 F
3438 3701 1.067295 TGGGAGAGCAATGTTGTCCT 58.933 50.000 12.58 0.0 0.00 3.85 F
3659 3939 2.157668 ACGTCGAACTTTTGCTATGCTG 59.842 45.455 0.00 0.0 0.00 4.41 F
4519 5040 0.883833 CCGCTCAAATGTCCAAAGCT 59.116 50.000 0.00 0.0 0.00 3.74 F
5168 5985 1.337703 TCTGTTGTGGTGATTGCTTGC 59.662 47.619 0.00 0.0 0.00 4.01 F
5993 6844 0.893727 ACAGATTGGAAACCGTGCCC 60.894 55.000 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1496 0.166379 TGTCCGCGAAAAATTACCGC 59.834 50.000 8.23 8.41 44.81 5.68 R
2395 2593 0.178921 ACTGGAGCAGAACCCTCTCA 60.179 55.000 0.00 0.00 35.18 3.27 R
3419 3681 1.067295 AGGACAACATTGCTCTCCCA 58.933 50.000 0.00 0.00 0.00 4.37 R
3465 3728 1.550072 TGCGAGATGTCAATGTCCTCA 59.450 47.619 0.00 0.00 0.00 3.86 R
4501 5022 1.135575 GGAGCTTTGGACATTTGAGCG 60.136 52.381 0.00 0.00 38.34 5.03 R
5638 6461 0.599991 TCACTGCTTGCCTGTGTACG 60.600 55.000 12.72 0.00 42.20 3.67 R
5973 6824 0.240945 GGCACGGTTTCCAATCTGTG 59.759 55.000 5.34 5.34 41.98 3.66 R
6748 7601 0.460811 CTGTATCTCCGCAGCAGCAA 60.461 55.000 0.82 0.00 42.27 3.91 R
7254 8134 1.025041 GAGGGACCCGATTGCATTTC 58.975 55.000 4.40 0.00 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 166 8.594881 ATGATACGATGGAGTGTTCTTATTTC 57.405 34.615 0.00 0.00 0.00 2.17
139 188 2.604614 CCCGCTTGCTACAGAAAACAAC 60.605 50.000 0.00 0.00 0.00 3.32
150 199 7.816995 TGCTACAGAAAACAACTGTGAATTTTT 59.183 29.630 10.24 0.00 46.15 1.94
178 227 0.817634 TGTTTCTCCAACAGCCACCG 60.818 55.000 0.00 0.00 40.71 4.94
277 339 0.391228 TAAGCTGAGGTGCGACACAA 59.609 50.000 11.20 0.00 35.86 3.33
286 348 2.552315 AGGTGCGACACAAAAACCATAG 59.448 45.455 11.20 0.00 35.86 2.23
296 358 5.070001 CACAAAAACCATAGACTTCCTCCA 58.930 41.667 0.00 0.00 0.00 3.86
305 367 0.178301 GACTTCCTCCATCCGGGTTC 59.822 60.000 0.00 0.00 38.11 3.62
317 379 1.632018 CCGGGTTCATTAGCCCCTCA 61.632 60.000 0.00 0.00 41.58 3.86
325 387 6.410540 GGTTCATTAGCCCCTCATATTCTAG 58.589 44.000 0.00 0.00 0.00 2.43
326 388 6.213600 GGTTCATTAGCCCCTCATATTCTAGA 59.786 42.308 0.00 0.00 0.00 2.43
335 397 8.230306 AGCCCCTCATATTCTAGATCAAAATTT 58.770 33.333 0.00 0.00 0.00 1.82
362 424 9.661563 AACCATACATACGACTAATGAAAAAGA 57.338 29.630 0.00 0.00 0.00 2.52
363 425 9.661563 ACCATACATACGACTAATGAAAAAGAA 57.338 29.630 0.00 0.00 0.00 2.52
435 497 6.378582 GTTTGACATGGTATAACTTGTGTGG 58.621 40.000 13.61 0.00 0.00 4.17
442 504 7.996066 ACATGGTATAACTTGTGTGGCATATAA 59.004 33.333 8.42 0.00 0.00 0.98
447 509 4.202245 ACTTGTGTGGCATATAACTCGT 57.798 40.909 0.00 0.00 0.00 4.18
496 558 6.816616 AACTTTGACCCAAAATAAAAGGGA 57.183 33.333 3.32 0.00 45.80 4.20
501 563 5.158889 TGACCCAAAATAAAAGGGACCAAT 58.841 37.500 3.32 0.00 45.80 3.16
506 568 7.940137 ACCCAAAATAAAAGGGACCAATTAAAC 59.060 33.333 3.32 0.00 45.80 2.01
514 576 2.425539 GGACCAATTAAACCCGAACGA 58.574 47.619 0.00 0.00 0.00 3.85
525 587 3.473923 ACCCGAACGAAGGAAGTAAAA 57.526 42.857 0.00 0.00 0.00 1.52
531 593 1.071228 ACGAAGGAAGTAAAAGCCGGT 59.929 47.619 1.90 0.00 0.00 5.28
536 598 3.763057 AGGAAGTAAAAGCCGGTGAAAT 58.237 40.909 1.90 0.00 0.00 2.17
538 600 5.318630 AGGAAGTAAAAGCCGGTGAAATAA 58.681 37.500 1.90 0.00 0.00 1.40
541 603 6.364165 GGAAGTAAAAGCCGGTGAAATAAAAC 59.636 38.462 1.90 0.00 0.00 2.43
566 628 3.004315 CCACAATCTACCACACACCAAAC 59.996 47.826 0.00 0.00 0.00 2.93
602 664 8.290277 AGAATATATTATCGAGTCCATACCCCT 58.710 37.037 0.00 0.00 0.00 4.79
603 665 8.480133 AATATATTATCGAGTCCATACCCCTC 57.520 38.462 0.00 0.00 0.00 4.30
621 683 5.301805 ACCCCTCATATTAAAATCCGCAAAG 59.698 40.000 0.00 0.00 0.00 2.77
624 686 6.697019 CCCTCATATTAAAATCCGCAAAGTTG 59.303 38.462 0.00 0.00 0.00 3.16
634 696 7.406799 AAATCCGCAAAGTTGAATAAAACAG 57.593 32.000 0.00 0.00 32.21 3.16
649 711 7.283127 TGAATAAAACAGATCCCTTATGCTCAC 59.717 37.037 0.00 0.00 0.00 3.51
662 724 6.270815 CCTTATGCTCACATTTCAATTGGAG 58.729 40.000 5.42 4.31 37.74 3.86
672 734 6.588756 CACATTTCAATTGGAGGATGTCAAAG 59.411 38.462 5.42 0.00 34.08 2.77
676 738 3.726557 ATTGGAGGATGTCAAAGCTCA 57.273 42.857 0.00 0.00 0.00 4.26
685 747 4.488879 GATGTCAAAGCTCATTTCCAACC 58.511 43.478 0.00 0.00 0.00 3.77
694 760 7.544804 AAGCTCATTTCCAACCTAATCTTTT 57.455 32.000 0.00 0.00 0.00 2.27
735 801 2.668212 CCGTGTTGGACCGCATGT 60.668 61.111 0.00 0.00 42.00 3.21
747 813 0.518636 CCGCATGTTGACTTCCACAG 59.481 55.000 0.00 0.00 0.00 3.66
749 815 0.953727 GCATGTTGACTTCCACAGCA 59.046 50.000 0.00 0.00 33.58 4.41
754 820 3.023119 TGTTGACTTCCACAGCAAACAT 58.977 40.909 0.00 0.00 0.00 2.71
756 822 1.955778 TGACTTCCACAGCAAACATGG 59.044 47.619 0.00 0.00 34.58 3.66
786 852 1.507141 AAACCGAAACTGCGAGCCTG 61.507 55.000 0.00 0.00 0.00 4.85
806 876 1.273327 GGAGGGACCACATTGCAAAAG 59.727 52.381 1.71 1.36 38.79 2.27
807 877 1.963515 GAGGGACCACATTGCAAAAGT 59.036 47.619 1.71 2.12 0.00 2.66
808 878 3.153919 GAGGGACCACATTGCAAAAGTA 58.846 45.455 1.71 0.00 0.00 2.24
810 880 4.159557 AGGGACCACATTGCAAAAGTAAT 58.840 39.130 1.71 0.00 0.00 1.89
811 881 5.329399 AGGGACCACATTGCAAAAGTAATA 58.671 37.500 1.71 0.00 0.00 0.98
818 889 6.129221 CCACATTGCAAAAGTAATAACACGTG 60.129 38.462 15.48 15.48 0.00 4.49
847 918 2.130073 GAAACACCCCTCTGTTGCGC 62.130 60.000 0.00 0.00 34.50 6.09
860 931 1.332065 TGTTGCGCGAACAAAGATCAA 59.668 42.857 12.10 0.00 41.80 2.57
884 958 0.616891 GTCCTTCCCCTTCGCCTTTA 59.383 55.000 0.00 0.00 0.00 1.85
958 1038 2.028876 CCCCCACGAAAATATTCCCAC 58.971 52.381 0.00 0.00 31.52 4.61
1101 1181 4.593864 GACGAGGAGATGGGCGGC 62.594 72.222 0.00 0.00 0.00 6.53
1329 1424 3.869272 GTGATCCTTGCGCGCCTG 61.869 66.667 30.77 20.59 0.00 4.85
1481 1602 2.159653 CGTCTTTGGAGGCTTTCGATTG 60.160 50.000 0.00 0.00 0.00 2.67
1488 1609 2.021931 GCTTTCGATTGCCGCGAG 59.978 61.111 8.23 0.00 39.14 5.03
1578 1708 5.505489 GGGCTTGCAATTTTTGGTTTTAGTG 60.505 40.000 0.00 0.00 0.00 2.74
1579 1709 5.065859 GGCTTGCAATTTTTGGTTTTAGTGT 59.934 36.000 0.00 0.00 0.00 3.55
1670 1805 1.192146 TGCTGTACACCTGGGAGTCC 61.192 60.000 0.00 0.00 0.00 3.85
1674 1809 0.745468 GTACACCTGGGAGTCCGATC 59.255 60.000 2.26 0.00 35.24 3.69
1777 1932 0.880278 ATCGTGGATCGCGGGATTTG 60.880 55.000 16.82 7.07 37.97 2.32
1828 1986 0.770499 TTGGTTGGTGAGCTGATGGA 59.230 50.000 0.00 0.00 0.00 3.41
1846 2019 4.842531 TGGAGGAGCTGTTGAATCATAA 57.157 40.909 0.00 0.00 0.00 1.90
1853 2026 6.599244 AGGAGCTGTTGAATCATAATTTTCGA 59.401 34.615 0.00 0.00 0.00 3.71
1872 2050 4.504858 TCGATGGAAAGTCTAAAAGAGGC 58.495 43.478 0.00 0.00 0.00 4.70
1895 2073 3.079578 CTGAGCTGATGGTTGACATTGT 58.920 45.455 0.00 0.00 40.72 2.71
1923 2103 3.058983 TCAACTCAATCAACGTGATGTGC 60.059 43.478 0.00 0.00 37.15 4.57
1927 2107 2.480037 TCAATCAACGTGATGTGCAGAC 59.520 45.455 0.00 0.00 37.15 3.51
1984 2175 8.865420 TTTTACTACCATTTTGCCATGTACTA 57.135 30.769 0.00 0.00 0.00 1.82
1985 2176 7.852971 TTACTACCATTTTGCCATGTACTAC 57.147 36.000 0.00 0.00 0.00 2.73
1986 2177 6.062258 ACTACCATTTTGCCATGTACTACT 57.938 37.500 0.00 0.00 0.00 2.57
1991 2182 5.336690 CCATTTTGCCATGTACTACTTGCTT 60.337 40.000 0.00 0.00 0.00 3.91
1994 2185 3.599343 TGCCATGTACTACTTGCTTGAG 58.401 45.455 0.00 0.00 0.00 3.02
2013 2204 2.029623 AGAATGGCAATGAGATGGTGC 58.970 47.619 0.00 0.00 37.55 5.01
2163 2356 2.257353 GTGAGCCGCACCTTTTGAT 58.743 52.632 0.00 0.00 41.78 2.57
2189 2383 4.935352 TGCTTTCTGGCTGTAATTTTGT 57.065 36.364 0.00 0.00 0.00 2.83
2204 2398 8.850454 TGTAATTTTGTTGTTTAGCTTCAGAC 57.150 30.769 0.00 0.00 0.00 3.51
2255 2449 3.722147 TCAGAAAAGTGTGAGCAGTCTC 58.278 45.455 0.00 0.00 39.78 3.36
2285 2479 0.955905 TGGCCGTAAAAAGACAAGCC 59.044 50.000 0.00 0.00 38.38 4.35
2302 2496 1.210478 AGCCCAAGCAATCATACGAGT 59.790 47.619 0.00 0.00 43.56 4.18
2330 2526 0.332972 CCCTCTTTTCCCCTTCCCTG 59.667 60.000 0.00 0.00 0.00 4.45
2331 2527 1.372501 CCTCTTTTCCCCTTCCCTGA 58.627 55.000 0.00 0.00 0.00 3.86
2335 2531 2.516277 TCTTTTCCCCTTCCCTGAAACA 59.484 45.455 0.00 0.00 0.00 2.83
2347 2543 4.594970 TCCCTGAAACAGTTCAACTTCAA 58.405 39.130 0.00 0.00 43.18 2.69
2376 2574 4.862641 ACTAATCCCTGTATGCCAAGTT 57.137 40.909 0.00 0.00 0.00 2.66
2379 2577 2.787473 TCCCTGTATGCCAAGTTCTG 57.213 50.000 0.00 0.00 0.00 3.02
2380 2578 1.098050 CCCTGTATGCCAAGTTCTGC 58.902 55.000 0.00 0.00 0.00 4.26
2381 2579 1.340405 CCCTGTATGCCAAGTTCTGCT 60.340 52.381 0.00 0.00 0.00 4.24
2382 2580 2.012673 CCTGTATGCCAAGTTCTGCTC 58.987 52.381 0.00 0.00 0.00 4.26
2383 2581 2.012673 CTGTATGCCAAGTTCTGCTCC 58.987 52.381 0.00 0.00 0.00 4.70
2385 2583 2.012673 GTATGCCAAGTTCTGCTCCAG 58.987 52.381 0.00 0.00 0.00 3.86
2388 2586 0.877743 GCCAAGTTCTGCTCCAGTTC 59.122 55.000 0.00 0.00 32.61 3.01
2389 2587 1.544314 GCCAAGTTCTGCTCCAGTTCT 60.544 52.381 0.00 0.00 32.61 3.01
2390 2588 2.856222 CCAAGTTCTGCTCCAGTTCTT 58.144 47.619 0.00 0.00 32.61 2.52
2391 2589 3.217626 CCAAGTTCTGCTCCAGTTCTTT 58.782 45.455 0.00 0.00 32.61 2.52
2393 2591 4.098501 CCAAGTTCTGCTCCAGTTCTTTTT 59.901 41.667 0.00 0.00 32.61 1.94
2490 2688 3.561143 TGGGTCACTTTGTTAACTGCAT 58.439 40.909 7.22 0.00 0.00 3.96
2509 2707 9.822185 AACTGCATTTTTATTTTGAGACTTCTT 57.178 25.926 0.00 0.00 0.00 2.52
2510 2708 9.468532 ACTGCATTTTTATTTTGAGACTTCTTC 57.531 29.630 0.00 0.00 0.00 2.87
2519 2717 1.412710 TGAGACTTCTTCGTGCAGGTT 59.587 47.619 6.26 0.00 0.00 3.50
2570 2768 4.616835 GCTGGATTTGACGCTGAAATTCTT 60.617 41.667 0.00 0.00 0.00 2.52
2948 3146 5.609533 TTGCTGTAAATACTACCCTCTCC 57.390 43.478 0.00 0.00 0.00 3.71
2981 3179 7.568349 AGATTGTATTTGATCCAGAAGCTGTA 58.432 34.615 0.00 0.00 0.00 2.74
3059 3257 2.223433 GCATGTGCAGAATCCTTACAGC 60.223 50.000 0.00 0.00 41.59 4.40
3113 3311 3.441572 CCAAAATGCTCCATCTTCTTCGT 59.558 43.478 0.00 0.00 0.00 3.85
3166 3364 2.645838 TGCTTTTCTCTTGCTCACCT 57.354 45.000 0.00 0.00 0.00 4.00
3167 3365 3.769739 TGCTTTTCTCTTGCTCACCTA 57.230 42.857 0.00 0.00 0.00 3.08
3172 3409 5.620879 GCTTTTCTCTTGCTCACCTAATTGG 60.621 44.000 0.00 0.00 42.93 3.16
3204 3441 5.643777 ACAGTTGGCATAGTTGATAGTTGTC 59.356 40.000 0.00 0.00 0.00 3.18
3206 3443 6.036517 CAGTTGGCATAGTTGATAGTTGTCTC 59.963 42.308 0.00 0.00 0.00 3.36
3208 3445 7.124298 AGTTGGCATAGTTGATAGTTGTCTCTA 59.876 37.037 0.00 0.00 0.00 2.43
3227 3464 4.883083 TCTAGGCAAGACAACTTACAGTG 58.117 43.478 0.00 0.00 34.70 3.66
3228 3465 2.851195 AGGCAAGACAACTTACAGTGG 58.149 47.619 0.00 0.00 34.70 4.00
3236 3473 4.844655 AGACAACTTACAGTGGAATAGGGT 59.155 41.667 0.00 0.00 0.00 4.34
3267 3504 2.932614 GTGTCAGCAACAGGTAGCATAG 59.067 50.000 0.00 0.00 38.97 2.23
3278 3515 6.054860 ACAGGTAGCATAGAAATGACACTT 57.945 37.500 0.00 0.00 34.84 3.16
3279 3516 6.476378 ACAGGTAGCATAGAAATGACACTTT 58.524 36.000 0.00 0.00 34.84 2.66
3280 3517 7.620880 ACAGGTAGCATAGAAATGACACTTTA 58.379 34.615 0.00 0.00 34.84 1.85
3281 3518 8.100791 ACAGGTAGCATAGAAATGACACTTTAA 58.899 33.333 0.00 0.00 34.84 1.52
3282 3519 8.946085 CAGGTAGCATAGAAATGACACTTTAAA 58.054 33.333 0.00 0.00 34.84 1.52
3283 3520 8.947115 AGGTAGCATAGAAATGACACTTTAAAC 58.053 33.333 0.00 0.00 34.84 2.01
3284 3521 8.726988 GGTAGCATAGAAATGACACTTTAAACA 58.273 33.333 0.00 0.00 34.84 2.83
3285 3522 9.760660 GTAGCATAGAAATGACACTTTAAACAG 57.239 33.333 0.00 0.00 34.84 3.16
3286 3523 8.621532 AGCATAGAAATGACACTTTAAACAGA 57.378 30.769 0.00 0.00 34.84 3.41
3287 3524 9.066892 AGCATAGAAATGACACTTTAAACAGAA 57.933 29.630 0.00 0.00 34.84 3.02
3288 3525 9.334693 GCATAGAAATGACACTTTAAACAGAAG 57.665 33.333 0.00 0.00 34.84 2.85
3289 3526 9.334693 CATAGAAATGACACTTTAAACAGAAGC 57.665 33.333 0.00 0.00 34.84 3.86
3290 3527 7.333528 AGAAATGACACTTTAAACAGAAGCA 57.666 32.000 0.00 0.00 0.00 3.91
3291 3528 7.945134 AGAAATGACACTTTAAACAGAAGCAT 58.055 30.769 0.00 0.00 0.00 3.79
3292 3529 7.864379 AGAAATGACACTTTAAACAGAAGCATG 59.136 33.333 0.00 0.00 0.00 4.06
3293 3530 5.437289 TGACACTTTAAACAGAAGCATGG 57.563 39.130 0.00 0.00 0.00 3.66
3294 3531 4.887071 TGACACTTTAAACAGAAGCATGGT 59.113 37.500 0.00 0.00 0.00 3.55
3295 3532 6.058833 TGACACTTTAAACAGAAGCATGGTA 58.941 36.000 0.00 0.00 0.00 3.25
3296 3533 6.204688 TGACACTTTAAACAGAAGCATGGTAG 59.795 38.462 0.00 0.00 0.00 3.18
3297 3534 5.048713 ACACTTTAAACAGAAGCATGGTAGC 60.049 40.000 0.00 0.00 0.00 3.58
3298 3535 5.048782 CACTTTAAACAGAAGCATGGTAGCA 60.049 40.000 0.00 0.00 36.85 3.49
3299 3536 5.182001 ACTTTAAACAGAAGCATGGTAGCAG 59.818 40.000 0.00 0.00 36.85 4.24
3300 3537 2.867109 AACAGAAGCATGGTAGCAGT 57.133 45.000 0.00 0.00 36.85 4.40
3301 3538 2.867109 ACAGAAGCATGGTAGCAGTT 57.133 45.000 0.00 0.00 36.85 3.16
3302 3539 3.146104 ACAGAAGCATGGTAGCAGTTT 57.854 42.857 0.00 0.00 36.85 2.66
3303 3540 4.286297 ACAGAAGCATGGTAGCAGTTTA 57.714 40.909 0.00 0.00 36.85 2.01
3304 3541 4.256920 ACAGAAGCATGGTAGCAGTTTAG 58.743 43.478 0.00 0.00 36.85 1.85
3305 3542 4.256920 CAGAAGCATGGTAGCAGTTTAGT 58.743 43.478 0.00 0.00 36.85 2.24
3306 3543 4.697352 CAGAAGCATGGTAGCAGTTTAGTT 59.303 41.667 0.00 0.00 36.85 2.24
3307 3544 5.874810 CAGAAGCATGGTAGCAGTTTAGTTA 59.125 40.000 0.00 0.00 36.85 2.24
3308 3545 6.540189 CAGAAGCATGGTAGCAGTTTAGTTAT 59.460 38.462 0.00 0.00 36.85 1.89
3309 3546 7.710907 CAGAAGCATGGTAGCAGTTTAGTTATA 59.289 37.037 0.00 0.00 36.85 0.98
3310 3547 8.432805 AGAAGCATGGTAGCAGTTTAGTTATAT 58.567 33.333 0.00 0.00 36.85 0.86
3311 3548 9.706691 GAAGCATGGTAGCAGTTTAGTTATATA 57.293 33.333 0.00 0.00 36.85 0.86
3312 3549 9.712305 AAGCATGGTAGCAGTTTAGTTATATAG 57.288 33.333 0.00 0.00 36.85 1.31
3313 3550 9.090103 AGCATGGTAGCAGTTTAGTTATATAGA 57.910 33.333 0.00 0.00 36.85 1.98
3314 3551 9.877178 GCATGGTAGCAGTTTAGTTATATAGAT 57.123 33.333 0.00 0.00 0.00 1.98
3358 3598 6.763135 TCTTGTCATTATGTGGCATCTAACTC 59.237 38.462 0.00 0.00 43.08 3.01
3360 3600 6.051074 TGTCATTATGTGGCATCTAACTCAG 58.949 40.000 0.00 0.00 37.56 3.35
3361 3601 6.051717 GTCATTATGTGGCATCTAACTCAGT 58.948 40.000 0.00 0.00 30.99 3.41
3362 3602 6.018425 GTCATTATGTGGCATCTAACTCAGTG 60.018 42.308 0.00 0.00 30.99 3.66
3363 3603 2.768253 TGTGGCATCTAACTCAGTGG 57.232 50.000 0.00 0.00 0.00 4.00
3365 3605 1.279271 GTGGCATCTAACTCAGTGGGT 59.721 52.381 0.00 0.00 0.00 4.51
3366 3606 1.555075 TGGCATCTAACTCAGTGGGTC 59.445 52.381 0.00 0.00 0.00 4.46
3367 3607 1.134371 GGCATCTAACTCAGTGGGTCC 60.134 57.143 0.00 0.00 0.00 4.46
3369 3609 2.419297 GCATCTAACTCAGTGGGTCCTG 60.419 54.545 0.00 0.00 0.00 3.86
3370 3610 2.696526 TCTAACTCAGTGGGTCCTGT 57.303 50.000 0.00 0.00 34.02 4.00
3375 3615 3.487120 ACTCAGTGGGTCCTGTTTTAC 57.513 47.619 0.00 0.00 34.02 2.01
3376 3616 3.046374 ACTCAGTGGGTCCTGTTTTACT 58.954 45.455 0.00 0.00 34.02 2.24
3378 3618 4.040095 ACTCAGTGGGTCCTGTTTTACTAC 59.960 45.833 0.00 0.00 34.02 2.73
3380 3620 4.039973 TCAGTGGGTCCTGTTTTACTACTG 59.960 45.833 0.00 0.00 34.78 2.74
3410 3672 9.974980 TTTCTTAAATATGAAACCCAACAAGAC 57.025 29.630 0.00 0.00 0.00 3.01
3416 3678 8.877864 AATATGAAACCCAACAAGACAAGATA 57.122 30.769 0.00 0.00 0.00 1.98
3417 3679 6.575162 ATGAAACCCAACAAGACAAGATAC 57.425 37.500 0.00 0.00 0.00 2.24
3419 3681 6.068010 TGAAACCCAACAAGACAAGATACAT 58.932 36.000 0.00 0.00 0.00 2.29
3420 3682 5.964958 AACCCAACAAGACAAGATACATG 57.035 39.130 0.00 0.00 0.00 3.21
3421 3683 4.335416 ACCCAACAAGACAAGATACATGG 58.665 43.478 0.00 0.00 0.00 3.66
3431 3694 4.458397 ACAAGATACATGGGAGAGCAATG 58.542 43.478 0.00 0.00 0.00 2.82
3436 3699 2.440409 ACATGGGAGAGCAATGTTGTC 58.560 47.619 0.00 0.00 30.41 3.18
3438 3701 1.067295 TGGGAGAGCAATGTTGTCCT 58.933 50.000 12.58 0.00 0.00 3.85
3447 3710 7.283127 GGAGAGCAATGTTGTCCTATTTCAATA 59.717 37.037 6.03 0.00 0.00 1.90
3459 3722 8.461222 TGTCCTATTTCAATATTTGAGCAAGTG 58.539 33.333 0.00 0.00 41.38 3.16
3461 3724 8.896744 TCCTATTTCAATATTTGAGCAAGTGAG 58.103 33.333 0.00 0.00 41.38 3.51
3469 3732 5.640189 ATTTGAGCAAGTGAGAATTGAGG 57.360 39.130 0.00 0.00 0.00 3.86
3473 3736 4.260170 GAGCAAGTGAGAATTGAGGACAT 58.740 43.478 0.00 0.00 0.00 3.06
3474 3737 4.660168 AGCAAGTGAGAATTGAGGACATT 58.340 39.130 0.00 0.00 0.00 2.71
3482 3745 6.036953 GTGAGAATTGAGGACATTGACATCTC 59.963 42.308 2.81 0.00 0.00 2.75
3483 3746 5.114780 AGAATTGAGGACATTGACATCTCG 58.885 41.667 2.81 0.00 0.00 4.04
3506 3769 5.007921 CGCATGGTATTCACATCAAATCTGA 59.992 40.000 0.00 0.00 35.56 3.27
3524 3788 8.446273 CAAATCTGACAATTGACTAACAGTAGG 58.554 37.037 13.59 3.02 0.00 3.18
3528 3792 4.906618 ACAATTGACTAACAGTAGGGGTG 58.093 43.478 13.59 0.00 0.00 4.61
3541 3805 5.163131 ACAGTAGGGGTGTTGTAGAAAACAT 60.163 40.000 0.00 0.00 41.81 2.71
3548 3812 8.799367 AGGGGTGTTGTAGAAAACATATAAAAC 58.201 33.333 0.00 0.00 41.81 2.43
3550 3814 8.291740 GGGTGTTGTAGAAAACATATAAAACGT 58.708 33.333 0.00 0.00 41.81 3.99
3568 3832 7.417496 AAAACGTATGGTTGTCTACTTTCTC 57.583 36.000 0.00 0.00 39.30 2.87
3569 3833 5.979288 ACGTATGGTTGTCTACTTTCTCT 57.021 39.130 0.00 0.00 0.00 3.10
3570 3834 6.342338 ACGTATGGTTGTCTACTTTCTCTT 57.658 37.500 0.00 0.00 0.00 2.85
3572 3836 7.311408 ACGTATGGTTGTCTACTTTCTCTTAC 58.689 38.462 0.00 0.00 0.00 2.34
3573 3837 7.040201 ACGTATGGTTGTCTACTTTCTCTTACA 60.040 37.037 0.00 0.00 0.00 2.41
3576 3840 8.974060 ATGGTTGTCTACTTTCTCTTACAAAA 57.026 30.769 0.00 0.00 0.00 2.44
3634 3914 5.906113 TTTGTTTGCTTCCTACTGTTCAA 57.094 34.783 0.00 0.00 0.00 2.69
3641 3921 5.302360 TGCTTCCTACTGTTCAAAATACGT 58.698 37.500 0.00 0.00 0.00 3.57
3659 3939 2.157668 ACGTCGAACTTTTGCTATGCTG 59.842 45.455 0.00 0.00 0.00 4.41
3662 3942 2.160219 TCGAACTTTTGCTATGCTGCTG 59.840 45.455 0.00 0.00 0.00 4.41
3770 4050 3.054875 TCAGTACATTGCTTCTCAGGCAT 60.055 43.478 0.00 0.00 39.54 4.40
3887 4167 4.113354 GAGCCTTAAGACATGGTTCTACG 58.887 47.826 3.36 0.00 31.30 3.51
3983 4263 3.874383 TTCACTGGATTTCAACCTCCA 57.126 42.857 0.00 0.00 39.23 3.86
4501 5022 8.207545 AGTCAGATAATATCTCTGGTTGAAACC 58.792 37.037 5.21 5.21 42.94 3.27
4519 5040 0.883833 CCGCTCAAATGTCCAAAGCT 59.116 50.000 0.00 0.00 0.00 3.74
4534 5055 6.721208 TGTCCAAAGCTCCTATTCAGAAATTT 59.279 34.615 0.00 0.00 0.00 1.82
4550 5071 6.821160 TCAGAAATTTGCCGATTATGTGAGTA 59.179 34.615 0.00 0.00 0.00 2.59
4551 5072 7.498900 TCAGAAATTTGCCGATTATGTGAGTAT 59.501 33.333 0.00 0.00 0.00 2.12
4556 5077 9.772973 AATTTGCCGATTATGTGAGTATACTTA 57.227 29.630 6.88 0.00 0.00 2.24
4616 5146 2.036475 TCTCTGTCAACTCTGCACCTTC 59.964 50.000 0.00 0.00 0.00 3.46
4624 5155 5.525378 GTCAACTCTGCACCTTCCTAATATG 59.475 44.000 0.00 0.00 0.00 1.78
4658 5218 9.635404 ATCCCAAAATATTTGAAATGATGCATT 57.365 25.926 0.00 0.00 35.39 3.56
4662 5222 9.509855 CAAAATATTTGAAATGATGCATTTGGG 57.490 29.630 9.85 0.00 43.05 4.12
4710 5395 5.976458 TGTTGAAATGCCTTTTTCAGAACT 58.024 33.333 6.65 0.00 44.12 3.01
4711 5396 7.106439 TGTTGAAATGCCTTTTTCAGAACTA 57.894 32.000 6.65 0.00 44.12 2.24
4712 5397 7.725251 TGTTGAAATGCCTTTTTCAGAACTAT 58.275 30.769 6.65 0.00 44.12 2.12
4714 5399 9.691362 GTTGAAATGCCTTTTTCAGAACTATAA 57.309 29.630 6.65 0.00 44.12 0.98
4770 5521 4.389890 TTTCACACATTGCTTTCTGCTT 57.610 36.364 0.00 0.00 43.37 3.91
4773 5524 3.251729 TCACACATTGCTTTCTGCTTCTC 59.748 43.478 0.00 0.00 43.37 2.87
4777 5528 3.255149 ACATTGCTTTCTGCTTCTCTTGG 59.745 43.478 0.00 0.00 43.37 3.61
4831 5582 5.408880 ACTTTTGGAGGACTAGCTTACTC 57.591 43.478 0.00 0.00 0.00 2.59
4912 5668 2.105649 TGGTGCTGACATTCCACTGTTA 59.894 45.455 0.00 0.00 0.00 2.41
4936 5738 4.519540 TTTTCAGGTGGCTAGCATTTTC 57.480 40.909 18.24 0.00 0.00 2.29
5078 5895 8.882415 TTTATAGGTTCTTATGTGGATCGTTC 57.118 34.615 0.00 0.00 0.00 3.95
5105 5922 5.836898 AGCATATCCACATTCATGGTTTGAT 59.163 36.000 0.00 0.00 40.95 2.57
5168 5985 1.337703 TCTGTTGTGGTGATTGCTTGC 59.662 47.619 0.00 0.00 0.00 4.01
5222 6039 4.269183 CTGTAATGGTGGCAACTGGAATA 58.731 43.478 3.27 0.00 37.61 1.75
5357 6174 3.801114 ACAACTGCAAAGGTTTTCTCC 57.199 42.857 0.00 0.00 0.00 3.71
5487 6305 7.514573 AAAAGACGTGTTTTGATGTTTTACC 57.485 32.000 21.17 0.00 0.00 2.85
5510 6331 6.100279 ACCTGTCATATCACTGTGGTTCATAT 59.900 38.462 8.11 1.25 0.00 1.78
5575 6396 7.344612 TCAGGCAGGATATTAGTTACTTTCTGA 59.655 37.037 0.00 0.00 0.00 3.27
5601 6422 8.443176 ACTGCATATCCATATATGATAAAGGGG 58.557 37.037 14.54 0.00 45.37 4.79
5670 6505 1.375098 GCAGTGAGCATCCTCTTGCC 61.375 60.000 0.00 0.00 43.83 4.52
5840 6675 6.249260 GTGCAATGTTTGATCAACGATAAGAC 59.751 38.462 7.89 2.36 38.36 3.01
5859 6694 4.906618 AGACGGTTTTGGTGAGTCATAAT 58.093 39.130 0.00 0.00 34.56 1.28
5860 6695 5.313712 AGACGGTTTTGGTGAGTCATAATT 58.686 37.500 0.00 0.00 34.56 1.40
5861 6696 6.469410 AGACGGTTTTGGTGAGTCATAATTA 58.531 36.000 0.00 0.00 34.56 1.40
5874 6710 9.289782 GTGAGTCATAATTAGCCATTATCCTTT 57.710 33.333 0.00 0.00 36.10 3.11
5927 6776 8.879759 AGTGTGTAACTGTAACATATGTATTGC 58.120 33.333 9.21 0.00 37.88 3.56
5955 6804 5.782047 TGTTCCCAAGTAAATTGCTGATTG 58.218 37.500 0.00 0.00 37.60 2.67
5973 6824 8.673711 TGCTGATTGTCTGTAATAAATGTTACC 58.326 33.333 0.00 0.00 34.43 2.85
5974 6825 8.673711 GCTGATTGTCTGTAATAAATGTTACCA 58.326 33.333 0.00 0.00 34.43 3.25
5993 6844 0.893727 ACAGATTGGAAACCGTGCCC 60.894 55.000 0.00 0.00 0.00 5.36
6100 6951 3.855689 GTGGCATATGACAGCAGTTTT 57.144 42.857 12.79 0.00 30.83 2.43
6256 7108 5.185249 AGAGGTTCGTATCTGTTTGCTTCTA 59.815 40.000 0.00 0.00 0.00 2.10
6277 7129 7.630242 TCTAAATTCTGATCACCCATTTGTC 57.370 36.000 10.37 0.00 0.00 3.18
6282 7135 4.588899 TCTGATCACCCATTTGTCGATTT 58.411 39.130 0.00 0.00 0.00 2.17
6294 7147 6.442952 CATTTGTCGATTTTTACCACCTCAA 58.557 36.000 0.00 0.00 0.00 3.02
6303 7156 4.650972 TTTACCACCTCAAGTGCCTAAT 57.349 40.909 0.00 0.00 45.83 1.73
6636 7489 1.632046 CCATGGCGTACAACGTGGTC 61.632 60.000 0.00 0.00 44.73 4.02
6729 7582 1.811266 CATGGCCTTCTCGTCCGTG 60.811 63.158 3.32 0.00 0.00 4.94
6748 7601 4.664677 GCGTGGTGTGCTCCTCGT 62.665 66.667 13.62 0.00 43.48 4.18
6817 7670 6.369340 GCAGATAACTGTAGAGTAGAGCGATA 59.631 42.308 1.65 0.00 45.04 2.92
6864 7731 4.517453 TCCCGTTCACCATTTTTACAGAAG 59.483 41.667 0.00 0.00 0.00 2.85
6892 7760 8.969260 AAATGAAAAGAAAGAAAATGGCTTCT 57.031 26.923 0.00 0.00 37.24 2.85
6923 7803 3.188460 GCTGCGGTGAATTACTTTTCTGA 59.812 43.478 0.00 0.00 0.00 3.27
6924 7804 4.320202 GCTGCGGTGAATTACTTTTCTGAA 60.320 41.667 0.00 0.00 0.00 3.02
6931 7811 8.289618 CGGTGAATTACTTTTCTGAATTCTTCA 58.710 33.333 7.05 1.54 39.34 3.02
6957 7837 2.434702 CGGCCAGGGAAGAGTAAATAGT 59.565 50.000 2.24 0.00 0.00 2.12
6963 7843 7.660617 GGCCAGGGAAGAGTAAATAGTATAAAC 59.339 40.741 0.00 0.00 0.00 2.01
7017 7897 6.815672 ACAACCGGTTTTAAAATTTTCTCG 57.184 33.333 19.55 3.36 0.00 4.04
7154 8034 2.285950 CGTGTGTTTGACCGTTAACTGG 60.286 50.000 12.90 12.90 0.00 4.00
7180 8060 0.396435 GGTCCCACATGTCAGTGTCA 59.604 55.000 0.00 0.00 37.82 3.58
7184 8064 2.562738 TCCCACATGTCAGTGTCAGTAG 59.437 50.000 0.00 0.00 37.82 2.57
7231 8111 3.242059 CCTGCAAACTTTTCAAAACGCAG 60.242 43.478 10.07 10.07 43.99 5.18
7254 8134 0.875059 GGTCCCTGCGAACTTTTGAG 59.125 55.000 0.00 0.00 0.00 3.02
7258 8138 3.253432 GTCCCTGCGAACTTTTGAGAAAT 59.747 43.478 0.00 0.00 0.00 2.17
7398 8290 1.885388 CGCGACAGGAACAACACCA 60.885 57.895 0.00 0.00 0.00 4.17
7491 8485 4.496336 GCCGCTTCTCCTGGGCAT 62.496 66.667 0.00 0.00 44.91 4.40
7492 8486 2.515523 CCGCTTCTCCTGGGCATG 60.516 66.667 0.00 0.00 0.00 4.06
7493 8487 2.515523 CGCTTCTCCTGGGCATGG 60.516 66.667 0.00 0.00 0.00 3.66
7494 8488 2.832201 GCTTCTCCTGGGCATGGC 60.832 66.667 11.56 11.56 0.00 4.40
7495 8489 2.515523 CTTCTCCTGGGCATGGCG 60.516 66.667 13.76 0.00 0.00 5.69
7496 8490 4.802051 TTCTCCTGGGCATGGCGC 62.802 66.667 13.76 0.00 41.94 6.53
7780 9686 1.874231 TGTTAGCAACGCGGAATTTGA 59.126 42.857 12.47 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 127 9.639601 GAACACTCCATCGTATCATATTCATTA 57.360 33.333 0.00 0.00 0.00 1.90
99 142 3.877508 CGGGGAAATAAGAACACTCCATC 59.122 47.826 0.00 0.00 0.00 3.51
117 166 0.521735 GTTTTCTGTAGCAAGCGGGG 59.478 55.000 0.00 0.00 0.00 5.73
139 188 7.703621 AGAAACATGACACTGAAAAATTCACAG 59.296 33.333 0.00 0.00 35.46 3.66
150 199 4.149511 TGTTGGAGAAACATGACACTGA 57.850 40.909 0.00 0.00 43.96 3.41
258 320 0.391228 TTGTGTCGCACCTCAGCTTA 59.609 50.000 7.38 0.00 32.73 3.09
277 339 4.384208 CGGATGGAGGAAGTCTATGGTTTT 60.384 45.833 0.00 0.00 0.00 2.43
286 348 0.178301 GAACCCGGATGGAGGAAGTC 59.822 60.000 0.73 0.00 37.49 3.01
305 367 7.429374 TGATCTAGAATATGAGGGGCTAATG 57.571 40.000 0.00 0.00 0.00 1.90
415 477 4.006989 TGCCACACAAGTTATACCATGTC 58.993 43.478 0.00 0.00 0.00 3.06
469 531 8.832521 CCCTTTTATTTTGGGTCAAAGTTTAAC 58.167 33.333 0.00 0.00 34.72 2.01
471 533 8.205512 GTCCCTTTTATTTTGGGTCAAAGTTTA 58.794 33.333 0.00 0.00 41.58 2.01
496 558 2.815503 CCTTCGTTCGGGTTTAATTGGT 59.184 45.455 0.00 0.00 0.00 3.67
501 563 3.473923 ACTTCCTTCGTTCGGGTTTAA 57.526 42.857 0.00 0.00 0.00 1.52
506 568 2.159037 GCTTTTACTTCCTTCGTTCGGG 59.841 50.000 0.00 0.00 0.00 5.14
514 576 2.943036 TCACCGGCTTTTACTTCCTT 57.057 45.000 0.00 0.00 0.00 3.36
525 587 1.890489 GGTGGTTTTATTTCACCGGCT 59.110 47.619 0.00 0.00 41.03 5.52
531 593 6.778069 TGGTAGATTGTGGTGGTTTTATTTCA 59.222 34.615 0.00 0.00 0.00 2.69
536 598 4.822896 GTGTGGTAGATTGTGGTGGTTTTA 59.177 41.667 0.00 0.00 0.00 1.52
538 600 3.219281 GTGTGGTAGATTGTGGTGGTTT 58.781 45.455 0.00 0.00 0.00 3.27
541 603 2.151202 GTGTGTGGTAGATTGTGGTGG 58.849 52.381 0.00 0.00 0.00 4.61
546 608 2.875933 CGTTTGGTGTGTGGTAGATTGT 59.124 45.455 0.00 0.00 0.00 2.71
547 609 2.350388 GCGTTTGGTGTGTGGTAGATTG 60.350 50.000 0.00 0.00 0.00 2.67
566 628 7.482113 ACTCGATAATATATTCTTCGAACTGCG 59.518 37.037 23.05 17.01 35.54 5.18
574 636 9.968870 GGGTATGGACTCGATAATATATTCTTC 57.031 37.037 0.00 0.19 0.00 2.87
577 639 8.480133 AGGGGTATGGACTCGATAATATATTC 57.520 38.462 0.00 0.00 0.00 1.75
621 683 8.000780 AGCATAAGGGATCTGTTTTATTCAAC 57.999 34.615 0.00 0.00 0.00 3.18
624 686 7.283127 TGTGAGCATAAGGGATCTGTTTTATTC 59.717 37.037 0.00 0.00 0.00 1.75
634 696 6.645790 ATTGAAATGTGAGCATAAGGGATC 57.354 37.500 0.00 0.00 34.39 3.36
644 706 4.159135 ACATCCTCCAATTGAAATGTGAGC 59.841 41.667 7.12 0.00 31.56 4.26
649 711 5.579511 GCTTTGACATCCTCCAATTGAAATG 59.420 40.000 7.12 7.29 0.00 2.32
662 724 4.488879 GTTGGAAATGAGCTTTGACATCC 58.511 43.478 0.00 0.00 0.00 3.51
672 734 7.826690 TGTAAAAGATTAGGTTGGAAATGAGC 58.173 34.615 0.00 0.00 0.00 4.26
720 786 0.040425 GTCAACATGCGGTCCAACAC 60.040 55.000 0.00 0.00 0.00 3.32
735 801 2.361757 CCATGTTTGCTGTGGAAGTCAA 59.638 45.455 0.00 0.00 34.94 3.18
747 813 3.451141 TGACTTGGTTTCCATGTTTGC 57.549 42.857 8.35 0.00 41.09 3.68
749 815 4.679372 CGGTTTGACTTGGTTTCCATGTTT 60.679 41.667 8.35 0.00 41.09 2.83
754 820 2.421751 TCGGTTTGACTTGGTTTCCA 57.578 45.000 0.00 0.00 0.00 3.53
756 822 4.102649 CAGTTTCGGTTTGACTTGGTTTC 58.897 43.478 0.00 0.00 0.00 2.78
786 852 1.273327 CTTTTGCAATGTGGTCCCTCC 59.727 52.381 0.00 0.00 0.00 4.30
806 876 8.889000 GTTTCTGAAAATGTCACGTGTTATTAC 58.111 33.333 16.51 6.41 31.13 1.89
807 877 8.613482 TGTTTCTGAAAATGTCACGTGTTATTA 58.387 29.630 16.51 0.00 31.13 0.98
808 878 7.431084 GTGTTTCTGAAAATGTCACGTGTTATT 59.569 33.333 16.51 13.86 31.13 1.40
810 880 6.252281 GTGTTTCTGAAAATGTCACGTGTTA 58.748 36.000 16.51 6.19 31.13 2.41
811 881 5.092781 GTGTTTCTGAAAATGTCACGTGTT 58.907 37.500 16.51 1.11 31.13 3.32
818 889 4.022849 CAGAGGGGTGTTTCTGAAAATGTC 60.023 45.833 4.09 0.00 42.67 3.06
847 918 3.684788 AGGACCGAATTGATCTTTGTTCG 59.315 43.478 12.24 12.24 42.08 3.95
860 931 1.905512 CGAAGGGGAAGGACCGAAT 59.094 57.895 0.00 0.00 40.11 3.34
884 958 2.291996 GGCTGGTTTATAAACTGGGGGT 60.292 50.000 23.89 0.00 38.89 4.95
1291 1386 0.460987 GGACGCCATCTCACCTTGAG 60.461 60.000 0.00 0.00 45.59 3.02
1381 1496 0.166379 TGTCCGCGAAAAATTACCGC 59.834 50.000 8.23 8.41 44.81 5.68
1488 1609 3.003763 ACCAACTCCCCGAGCCTC 61.004 66.667 0.00 0.00 32.04 4.70
1579 1709 9.447040 CGAATTCAATTCTCACGTCTATACTTA 57.553 33.333 8.50 0.00 37.13 2.24
1597 1732 2.226330 CAGACAACCCCACGAATTCAA 58.774 47.619 6.22 0.00 0.00 2.69
1792 1950 0.951558 CAACCAAAAGCTACTGCGGT 59.048 50.000 2.42 2.42 45.42 5.68
1828 1986 6.599244 TCGAAAATTATGATTCAACAGCTCCT 59.401 34.615 0.00 0.00 0.00 3.69
1846 2019 7.362142 GCCTCTTTTAGACTTTCCATCGAAAAT 60.362 37.037 0.00 0.00 37.53 1.82
1853 2026 3.010420 GCGCCTCTTTTAGACTTTCCAT 58.990 45.455 0.00 0.00 0.00 3.41
1872 2050 0.671472 TGTCAACCATCAGCTCAGCG 60.671 55.000 0.00 0.00 0.00 5.18
1895 2073 2.288579 ACGTTGATTGAGTTGAGCCGTA 60.289 45.455 0.00 0.00 0.00 4.02
1923 2103 4.963276 TCAGTGTTTTGAAACCAGTCTG 57.037 40.909 4.32 0.00 38.11 3.51
1927 2107 4.858692 CACAGTTCAGTGTTTTGAAACCAG 59.141 41.667 4.32 0.00 38.69 4.00
1955 2143 7.151976 ACATGGCAAAATGGTAGTAAAAGTTC 58.848 34.615 0.00 0.00 31.46 3.01
1991 2182 3.284617 CACCATCTCATTGCCATTCTCA 58.715 45.455 0.00 0.00 0.00 3.27
1994 2185 1.268896 CGCACCATCTCATTGCCATTC 60.269 52.381 0.00 0.00 32.31 2.67
2163 2356 5.726980 AATTACAGCCAGAAAGCAAATGA 57.273 34.783 0.00 0.00 34.23 2.57
2285 2479 4.685169 AACAACTCGTATGATTGCTTGG 57.315 40.909 6.89 0.00 0.00 3.61
2302 2496 3.142028 AGGGGAAAAGAGGGATCAAACAA 59.858 43.478 0.00 0.00 0.00 2.83
2347 2543 7.526041 TGGCATACAGGGATTAGTATTCAAAT 58.474 34.615 0.00 0.00 0.00 2.32
2363 2561 2.012673 GGAGCAGAACTTGGCATACAG 58.987 52.381 0.00 0.00 0.00 2.74
2391 2589 2.174639 TGGAGCAGAACCCTCTCAAAAA 59.825 45.455 0.00 0.00 0.00 1.94
2393 2591 1.349026 CTGGAGCAGAACCCTCTCAAA 59.651 52.381 0.00 0.00 32.44 2.69
2394 2592 0.979665 CTGGAGCAGAACCCTCTCAA 59.020 55.000 0.00 0.00 32.44 3.02
2395 2593 0.178921 ACTGGAGCAGAACCCTCTCA 60.179 55.000 0.00 0.00 35.18 3.27
2396 2594 0.980423 AACTGGAGCAGAACCCTCTC 59.020 55.000 0.00 0.00 35.18 3.20
2397 2595 1.439543 AAACTGGAGCAGAACCCTCT 58.560 50.000 0.00 0.00 35.18 3.69
2399 2597 2.621070 TCTAAACTGGAGCAGAACCCT 58.379 47.619 0.00 0.00 35.18 4.34
2400 2598 3.055094 TCATCTAAACTGGAGCAGAACCC 60.055 47.826 0.00 0.00 35.18 4.11
2401 2599 3.935828 GTCATCTAAACTGGAGCAGAACC 59.064 47.826 0.00 0.00 35.18 3.62
2402 2600 4.629200 CAGTCATCTAAACTGGAGCAGAAC 59.371 45.833 0.00 0.00 40.36 3.01
2490 2688 7.476667 TGCACGAAGAAGTCTCAAAATAAAAA 58.523 30.769 0.00 0.00 0.00 1.94
2501 2699 1.412710 TCAACCTGCACGAAGAAGTCT 59.587 47.619 0.00 0.00 0.00 3.24
2509 2707 4.955811 ATTATATCCTCAACCTGCACGA 57.044 40.909 0.00 0.00 0.00 4.35
2510 2708 6.025749 TCTATTATATCCTCAACCTGCACG 57.974 41.667 0.00 0.00 0.00 5.34
2570 2768 1.198713 GAGGGACTGCAGAATCTGGA 58.801 55.000 23.35 8.47 41.55 3.86
2849 3047 2.281761 GTGTGGGTGCCAGTCAGG 60.282 66.667 0.00 0.00 41.84 3.86
2948 3146 7.278646 TCTGGATCAAATACAATCTCAACTTCG 59.721 37.037 0.00 0.00 0.00 3.79
2981 3179 1.278985 TCCACAATTGATCGCAGACCT 59.721 47.619 13.59 0.00 42.51 3.85
3013 3211 1.312815 GAATCTCCCATTGCTTCCCG 58.687 55.000 0.00 0.00 0.00 5.14
3059 3257 1.369091 CGTCATTTGAAGCCCCTCGG 61.369 60.000 0.00 0.00 0.00 4.63
3166 3364 9.772973 CTATGCCAACTGTACTATAACCAATTA 57.227 33.333 0.00 0.00 0.00 1.40
3167 3365 8.272173 ACTATGCCAACTGTACTATAACCAATT 58.728 33.333 0.00 0.00 0.00 2.32
3172 3409 8.888579 ATCAACTATGCCAACTGTACTATAAC 57.111 34.615 0.00 0.00 0.00 1.89
3180 3417 5.560724 ACAACTATCAACTATGCCAACTGT 58.439 37.500 0.00 0.00 0.00 3.55
3185 3422 5.939764 AGAGACAACTATCAACTATGCCA 57.060 39.130 0.00 0.00 0.00 4.92
3227 3464 7.004555 TGACACATCATACATACCCTATTCC 57.995 40.000 0.00 0.00 0.00 3.01
3228 3465 6.591834 GCTGACACATCATACATACCCTATTC 59.408 42.308 0.00 0.00 33.22 1.75
3236 3473 5.118286 CCTGTTGCTGACACATCATACATA 58.882 41.667 0.00 0.00 33.22 2.29
3267 3504 7.115378 CCATGCTTCTGTTTAAAGTGTCATTTC 59.885 37.037 0.00 0.00 0.00 2.17
3278 3515 4.651778 ACTGCTACCATGCTTCTGTTTAA 58.348 39.130 0.00 0.00 0.00 1.52
3279 3516 4.286297 ACTGCTACCATGCTTCTGTTTA 57.714 40.909 0.00 0.00 0.00 2.01
3280 3517 3.146104 ACTGCTACCATGCTTCTGTTT 57.854 42.857 0.00 0.00 0.00 2.83
3281 3518 2.867109 ACTGCTACCATGCTTCTGTT 57.133 45.000 0.00 0.00 0.00 3.16
3282 3519 2.867109 AACTGCTACCATGCTTCTGT 57.133 45.000 0.00 0.00 0.00 3.41
3283 3520 4.256920 ACTAAACTGCTACCATGCTTCTG 58.743 43.478 0.00 0.00 0.00 3.02
3284 3521 4.559862 ACTAAACTGCTACCATGCTTCT 57.440 40.909 0.00 0.00 0.00 2.85
3285 3522 6.927294 ATAACTAAACTGCTACCATGCTTC 57.073 37.500 0.00 0.00 0.00 3.86
3286 3523 9.712305 CTATATAACTAAACTGCTACCATGCTT 57.288 33.333 0.00 0.00 0.00 3.91
3287 3524 9.090103 TCTATATAACTAAACTGCTACCATGCT 57.910 33.333 0.00 0.00 0.00 3.79
3288 3525 9.877178 ATCTATATAACTAAACTGCTACCATGC 57.123 33.333 0.00 0.00 0.00 4.06
3314 3551 9.594478 TGACAAGAATATGAAAGACGCTATTTA 57.406 29.630 0.00 0.00 0.00 1.40
3315 3552 8.492673 TGACAAGAATATGAAAGACGCTATTT 57.507 30.769 0.00 0.00 0.00 1.40
3316 3553 8.668510 ATGACAAGAATATGAAAGACGCTATT 57.331 30.769 0.00 0.00 0.00 1.73
3317 3554 8.668510 AATGACAAGAATATGAAAGACGCTAT 57.331 30.769 0.00 0.00 0.00 2.97
3318 3555 9.764363 ATAATGACAAGAATATGAAAGACGCTA 57.236 29.630 0.00 0.00 0.00 4.26
3319 3556 6.992063 AATGACAAGAATATGAAAGACGCT 57.008 33.333 0.00 0.00 0.00 5.07
3320 3557 8.338259 ACATAATGACAAGAATATGAAAGACGC 58.662 33.333 0.00 0.00 31.71 5.19
3321 3558 9.642312 CACATAATGACAAGAATATGAAAGACG 57.358 33.333 0.00 0.00 31.71 4.18
3322 3559 9.941664 CCACATAATGACAAGAATATGAAAGAC 57.058 33.333 0.00 0.00 31.71 3.01
3323 3560 8.623903 GCCACATAATGACAAGAATATGAAAGA 58.376 33.333 0.00 0.00 31.71 2.52
3324 3561 8.407832 TGCCACATAATGACAAGAATATGAAAG 58.592 33.333 0.00 0.00 31.71 2.62
3334 3571 6.539826 TGAGTTAGATGCCACATAATGACAAG 59.460 38.462 0.00 0.00 0.00 3.16
3358 3598 4.202326 ACAGTAGTAAAACAGGACCCACTG 60.202 45.833 0.00 0.00 44.03 3.66
3360 3600 4.347360 ACAGTAGTAAAACAGGACCCAC 57.653 45.455 0.00 0.00 0.00 4.61
3361 3601 5.376756 AAACAGTAGTAAAACAGGACCCA 57.623 39.130 0.00 0.00 0.00 4.51
3362 3602 6.704289 AAAAACAGTAGTAAAACAGGACCC 57.296 37.500 0.00 0.00 0.00 4.46
3386 3648 8.698973 TGTCTTGTTGGGTTTCATATTTAAGA 57.301 30.769 0.00 0.00 0.00 2.10
3391 3653 7.781324 ATCTTGTCTTGTTGGGTTTCATATT 57.219 32.000 0.00 0.00 0.00 1.28
3394 3656 6.068010 TGTATCTTGTCTTGTTGGGTTTCAT 58.932 36.000 0.00 0.00 0.00 2.57
3410 3672 4.458397 ACATTGCTCTCCCATGTATCTTG 58.542 43.478 0.00 0.00 0.00 3.02
3416 3678 2.440409 GACAACATTGCTCTCCCATGT 58.560 47.619 0.00 0.00 0.00 3.21
3417 3679 1.747355 GGACAACATTGCTCTCCCATG 59.253 52.381 0.00 0.00 0.00 3.66
3419 3681 1.067295 AGGACAACATTGCTCTCCCA 58.933 50.000 0.00 0.00 0.00 4.37
3420 3682 3.567478 ATAGGACAACATTGCTCTCCC 57.433 47.619 0.00 0.00 0.00 4.30
3421 3683 4.943705 TGAAATAGGACAACATTGCTCTCC 59.056 41.667 0.00 0.00 0.00 3.71
3431 3694 9.294030 CTTGCTCAAATATTGAAATAGGACAAC 57.706 33.333 0.00 0.00 39.58 3.32
3436 3699 8.896744 TCTCACTTGCTCAAATATTGAAATAGG 58.103 33.333 0.00 0.00 39.58 2.57
3447 3710 5.182760 GTCCTCAATTCTCACTTGCTCAAAT 59.817 40.000 0.00 0.00 0.00 2.32
3459 3722 5.233902 CGAGATGTCAATGTCCTCAATTCTC 59.766 44.000 0.00 0.00 0.00 2.87
3461 3724 4.260538 GCGAGATGTCAATGTCCTCAATTC 60.261 45.833 0.00 0.00 0.00 2.17
3464 3727 2.028203 TGCGAGATGTCAATGTCCTCAA 60.028 45.455 0.00 0.00 0.00 3.02
3465 3728 1.550072 TGCGAGATGTCAATGTCCTCA 59.450 47.619 0.00 0.00 0.00 3.86
3469 3732 2.283298 ACCATGCGAGATGTCAATGTC 58.717 47.619 0.00 0.00 0.00 3.06
3473 3736 3.871006 GTGAATACCATGCGAGATGTCAA 59.129 43.478 0.00 0.00 0.00 3.18
3474 3737 3.118811 TGTGAATACCATGCGAGATGTCA 60.119 43.478 0.00 0.00 0.00 3.58
3482 3745 5.007921 TCAGATTTGATGTGAATACCATGCG 59.992 40.000 0.00 0.00 28.66 4.73
3483 3746 6.183360 TGTCAGATTTGATGTGAATACCATGC 60.183 38.462 0.00 0.00 34.08 4.06
3506 3769 4.349930 ACACCCCTACTGTTAGTCAATTGT 59.650 41.667 5.13 0.00 0.00 2.71
3524 3788 8.291740 ACGTTTTATATGTTTTCTACAACACCC 58.708 33.333 0.00 0.00 39.48 4.61
3548 3812 7.310664 TGTAAGAGAAAGTAGACAACCATACG 58.689 38.462 0.00 0.00 0.00 3.06
3552 3816 8.974060 ATTTTGTAAGAGAAAGTAGACAACCA 57.026 30.769 0.00 0.00 0.00 3.67
3556 3820 9.096823 TCCCTATTTTGTAAGAGAAAGTAGACA 57.903 33.333 0.00 0.00 28.80 3.41
3634 3914 5.121768 AGCATAGCAAAAGTTCGACGTATTT 59.878 36.000 0.00 0.00 0.00 1.40
3641 3921 2.160219 CAGCAGCATAGCAAAAGTTCGA 59.840 45.455 0.00 0.00 36.85 3.71
3659 3939 1.800805 TGAGTCAGTAAGCAAGCAGC 58.199 50.000 0.00 0.00 46.19 5.25
3662 3942 5.362556 TTGAATTGAGTCAGTAAGCAAGC 57.637 39.130 0.00 0.00 0.00 4.01
3770 4050 3.629539 CCCCCATATGAAATGGTCCACAA 60.630 47.826 3.65 0.00 37.48 3.33
3887 4167 8.184192 CCAAGAACAACTAACACATCCATATTC 58.816 37.037 0.00 0.00 0.00 1.75
4501 5022 1.135575 GGAGCTTTGGACATTTGAGCG 60.136 52.381 0.00 0.00 38.34 5.03
4519 5040 7.502226 ACATAATCGGCAAATTTCTGAATAGGA 59.498 33.333 10.47 0.00 0.00 2.94
4534 5055 9.772973 AAAATAAGTATACTCACATAATCGGCA 57.227 29.630 5.70 0.00 0.00 5.69
4556 5077 9.236691 GCAAACATCGAATATCACATACAAAAT 57.763 29.630 0.00 0.00 0.00 1.82
4606 5136 8.713971 TCTAAAATCATATTAGGAAGGTGCAGA 58.286 33.333 0.00 0.00 32.43 4.26
4607 5137 8.908786 TCTAAAATCATATTAGGAAGGTGCAG 57.091 34.615 0.00 0.00 32.43 4.41
4641 5172 5.742063 TGCCCAAATGCATCATTTCAAATA 58.258 33.333 0.00 0.00 41.40 1.40
4685 5245 6.536224 AGTTCTGAAAAAGGCATTTCAACAAG 59.464 34.615 16.05 7.69 45.75 3.16
4687 5247 5.976458 AGTTCTGAAAAAGGCATTTCAACA 58.024 33.333 16.05 0.00 45.75 3.33
4688 5248 9.691362 TTATAGTTCTGAAAAAGGCATTTCAAC 57.309 29.630 16.05 12.99 45.75 3.18
4710 5395 8.672815 TCGCACAACATGAAAGATGAAATTATA 58.327 29.630 0.00 0.00 0.00 0.98
4711 5396 7.537715 TCGCACAACATGAAAGATGAAATTAT 58.462 30.769 0.00 0.00 0.00 1.28
4712 5397 6.907741 TCGCACAACATGAAAGATGAAATTA 58.092 32.000 0.00 0.00 0.00 1.40
4714 5399 5.375417 TCGCACAACATGAAAGATGAAAT 57.625 34.783 0.00 0.00 0.00 2.17
4718 5403 3.910170 CACTTCGCACAACATGAAAGATG 59.090 43.478 0.00 0.00 0.00 2.90
4831 5582 3.617263 GGTGAACACGTAGCTAATTCAGG 59.383 47.826 0.00 0.00 30.25 3.86
4912 5668 2.656947 TGCTAGCCACCTGAAAAAGT 57.343 45.000 13.29 0.00 0.00 2.66
4936 5738 3.253188 ACAAGGTGATGACAATTGGAACG 59.747 43.478 10.83 0.00 32.64 3.95
5168 5985 1.604593 CAGACCAAGGGCACAAGGG 60.605 63.158 1.55 0.00 0.00 3.95
5222 6039 3.352611 AGTACTCCATGATTAGCCCCT 57.647 47.619 0.00 0.00 0.00 4.79
5357 6174 2.717639 AATCTCCAAGGTCCATTCCG 57.282 50.000 0.00 0.00 0.00 4.30
5470 6288 9.341899 GATATGACAGGTAAAACATCAAAACAC 57.658 33.333 0.00 0.00 0.00 3.32
5471 6289 9.072375 TGATATGACAGGTAAAACATCAAAACA 57.928 29.630 0.00 0.00 0.00 2.83
5485 6303 3.582647 TGAACCACAGTGATATGACAGGT 59.417 43.478 0.62 0.00 0.00 4.00
5486 6304 4.206477 TGAACCACAGTGATATGACAGG 57.794 45.455 0.62 0.00 0.00 4.00
5487 6305 7.212274 TGATATGAACCACAGTGATATGACAG 58.788 38.462 0.62 0.00 0.00 3.51
5510 6331 8.735315 CCATAACATGTTTTTACCACATACTGA 58.265 33.333 17.78 0.00 32.88 3.41
5575 6396 8.443176 CCCCTTTATCATATATGGATATGCAGT 58.557 37.037 12.78 0.00 43.24 4.40
5638 6461 0.599991 TCACTGCTTGCCTGTGTACG 60.600 55.000 12.72 0.00 42.20 3.67
5670 6505 7.707464 TGAAATGCATATTCCAATACAGCTTTG 59.293 33.333 0.00 0.00 30.38 2.77
5817 6652 5.449113 CGTCTTATCGTTGATCAAACATTGC 59.551 40.000 10.35 0.00 38.84 3.56
5840 6675 5.448632 GGCTAATTATGACTCACCAAAACCG 60.449 44.000 0.00 0.00 0.00 4.44
5859 6694 5.674958 AGAAGGGGTAAAGGATAATGGCTAA 59.325 40.000 0.00 0.00 0.00 3.09
5860 6695 5.073144 CAGAAGGGGTAAAGGATAATGGCTA 59.927 44.000 0.00 0.00 0.00 3.93
5861 6696 4.055094 AGAAGGGGTAAAGGATAATGGCT 58.945 43.478 0.00 0.00 0.00 4.75
5874 6710 6.956102 TTGAGGTATTTTACAGAAGGGGTA 57.044 37.500 0.00 0.00 0.00 3.69
5926 6775 5.358160 AGCAATTTACTTGGGAACATCTAGC 59.642 40.000 0.00 0.00 42.32 3.42
5927 6776 6.599244 TCAGCAATTTACTTGGGAACATCTAG 59.401 38.462 0.00 0.00 42.32 2.43
5930 6779 5.643379 TCAGCAATTTACTTGGGAACATC 57.357 39.130 0.00 0.00 42.32 3.06
5936 6785 5.047802 ACAGACAATCAGCAATTTACTTGGG 60.048 40.000 0.00 0.00 35.25 4.12
5973 6824 0.240945 GGCACGGTTTCCAATCTGTG 59.759 55.000 5.34 5.34 41.98 3.66
5974 6825 0.893727 GGGCACGGTTTCCAATCTGT 60.894 55.000 0.00 0.00 0.00 3.41
5993 6844 3.081061 TCACCCCATTTTCGTTCATCAG 58.919 45.455 0.00 0.00 0.00 2.90
6100 6951 1.221635 CTATCCCCATCAACCCCACA 58.778 55.000 0.00 0.00 0.00 4.17
6199 7050 0.946221 GTGCAGTCCTCCAGTTGTCG 60.946 60.000 0.00 0.00 0.00 4.35
6256 7108 5.009631 TCGACAAATGGGTGATCAGAATTT 58.990 37.500 0.00 0.00 0.00 1.82
6277 7129 3.365969 GGCACTTGAGGTGGTAAAAATCG 60.366 47.826 0.00 0.00 45.44 3.34
6282 7135 4.650972 ATTAGGCACTTGAGGTGGTAAA 57.349 40.909 0.00 0.00 45.44 2.01
6294 7147 4.079253 CCCAGTGTAAACAATTAGGCACT 58.921 43.478 0.00 0.00 46.37 4.40
6303 7156 7.589958 AATGACAATAACCCAGTGTAAACAA 57.410 32.000 0.00 0.00 35.09 2.83
6375 7228 3.411351 CGGACCACGTCGGCTTTG 61.411 66.667 0.00 0.00 39.03 2.77
6669 7522 2.039624 ATCTGGAGCCCCGTCACT 59.960 61.111 0.00 0.00 34.29 3.41
6670 7523 2.187946 CATCTGGAGCCCCGTCAC 59.812 66.667 0.00 0.00 34.29 3.67
6748 7601 0.460811 CTGTATCTCCGCAGCAGCAA 60.461 55.000 0.82 0.00 42.27 3.91
6817 7670 7.173390 GGACTTACAGTATTCACAAAAGAAGCT 59.827 37.037 0.00 0.00 0.00 3.74
6819 7672 7.360101 CGGGACTTACAGTATTCACAAAAGAAG 60.360 40.741 0.00 0.00 0.00 2.85
6821 7674 5.929992 CGGGACTTACAGTATTCACAAAAGA 59.070 40.000 0.00 0.00 0.00 2.52
6845 7712 8.755018 CATTTCACTTCTGTAAAAATGGTGAAC 58.245 33.333 0.00 0.00 40.37 3.18
6864 7731 8.146479 AGCCATTTTCTTTCTTTTCATTTCAC 57.854 30.769 0.00 0.00 0.00 3.18
6892 7760 2.646117 TTCACCGCAGCCGTACACAA 62.646 55.000 0.00 0.00 0.00 3.33
6923 7803 3.023832 CCCTGGCCGTTTATGAAGAATT 58.976 45.455 0.00 0.00 0.00 2.17
6924 7804 2.241176 TCCCTGGCCGTTTATGAAGAAT 59.759 45.455 0.00 0.00 0.00 2.40
6931 7811 1.286248 ACTCTTCCCTGGCCGTTTAT 58.714 50.000 0.00 0.00 0.00 1.40
6957 7837 9.359653 CCTAGCCTGTAAAGTAGTAGGTTTATA 57.640 37.037 0.00 0.00 32.85 0.98
6963 7843 4.544683 ACCCTAGCCTGTAAAGTAGTAGG 58.455 47.826 0.00 0.00 0.00 3.18
7180 8060 7.288810 TGATGGCATTTTTGAAAAGTCTACT 57.711 32.000 0.00 0.00 0.00 2.57
7184 8064 5.299949 ACCTGATGGCATTTTTGAAAAGTC 58.700 37.500 0.00 0.00 36.63 3.01
7231 8111 2.726822 AAAGTTCGCAGGGACCCGAC 62.727 60.000 4.40 0.00 32.63 4.79
7244 8124 4.622740 CCCGATTGCATTTCTCAAAAGTTC 59.377 41.667 0.00 0.00 0.00 3.01
7254 8134 1.025041 GAGGGACCCGATTGCATTTC 58.975 55.000 4.40 0.00 0.00 2.17
7258 8138 2.285368 AGGAGGGACCCGATTGCA 60.285 61.111 4.40 0.00 40.05 4.08
7330 8211 3.249189 AAAGGGAGCTCCACGGCA 61.249 61.111 33.29 0.00 38.24 5.69
7740 9646 8.730427 GCTAACATTTTAAACCGATTTATGACG 58.270 33.333 1.76 0.00 30.33 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.