Multiple sequence alignment - TraesCS7B01G380700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G380700 chr7B 100.000 3017 0 0 1 3017 645396989 645393973 0.000000e+00 5572.0
1 TraesCS7B01G380700 chr7B 80.388 928 147 17 1001 1896 743653895 743654819 0.000000e+00 673.0
2 TraesCS7B01G380700 chr7B 82.239 777 129 7 1 774 744210153 744210923 0.000000e+00 662.0
3 TraesCS7B01G380700 chr7B 82.194 775 133 4 1 774 744336665 744335895 0.000000e+00 662.0
4 TraesCS7B01G380700 chr7B 82.005 778 131 8 1 774 747525461 747524689 0.000000e+00 652.0
5 TraesCS7B01G380700 chr7B 79.741 928 153 23 1001 1896 744251176 744252100 9.120000e-180 640.0
6 TraesCS7B01G380700 chr7B 79.419 792 131 20 1001 1764 744291924 744291137 5.730000e-147 531.0
7 TraesCS7B01G380700 chr7B 82.189 466 51 15 1362 1803 744335760 744335303 3.670000e-99 372.0
8 TraesCS7B01G380700 chr7B 96.714 213 4 3 786 997 541957422 541957632 4.790000e-93 351.0
9 TraesCS7B01G380700 chr7B 96.244 213 6 2 786 997 714779754 714779965 6.190000e-92 348.0
10 TraesCS7B01G380700 chr7D 92.085 1415 64 16 999 2377 579760258 579758856 0.000000e+00 1949.0
11 TraesCS7B01G380700 chr7D 97.197 785 22 0 1 785 579761037 579760253 0.000000e+00 1328.0
12 TraesCS7B01G380700 chr7D 84.190 778 109 11 1 771 621261709 621262479 0.000000e+00 743.0
13 TraesCS7B01G380700 chr7D 83.825 779 116 10 1 774 632035742 632036515 0.000000e+00 732.0
14 TraesCS7B01G380700 chr7D 81.599 913 128 23 1001 1878 555050914 555051821 0.000000e+00 719.0
15 TraesCS7B01G380700 chr7D 81.189 925 141 21 1001 1896 632099766 632100686 0.000000e+00 713.0
16 TraesCS7B01G380700 chr7D 81.477 880 134 14 1039 1890 632021902 632022780 0.000000e+00 695.0
17 TraesCS7B01G380700 chr7D 82.420 785 116 17 1 774 632143655 632144428 0.000000e+00 665.0
18 TraesCS7B01G380700 chr7D 95.756 377 11 4 2578 2951 579758757 579758383 1.200000e-168 603.0
19 TraesCS7B01G380700 chr7D 92.353 170 13 0 2415 2584 11122868 11122699 3.000000e-60 243.0
20 TraesCS7B01G380700 chr7D 93.293 164 11 0 2412 2575 571008780 571008943 3.000000e-60 243.0
21 TraesCS7B01G380700 chr7D 100.000 37 0 0 2981 3017 579758377 579758341 5.400000e-08 69.4
22 TraesCS7B01G380700 chr7D 97.222 36 1 0 2376 2411 579758794 579758759 9.030000e-06 62.1
23 TraesCS7B01G380700 chr7A 91.860 1204 63 12 999 2179 671423863 671422672 0.000000e+00 1648.0
24 TraesCS7B01G380700 chr7A 95.924 785 32 0 1 785 671424642 671423858 0.000000e+00 1273.0
25 TraesCS7B01G380700 chr7A 81.838 925 135 20 1001 1896 736070824 736069904 0.000000e+00 747.0
26 TraesCS7B01G380700 chr7A 81.028 817 119 21 1112 1896 735929384 735930196 4.270000e-173 617.0
27 TraesCS7B01G380700 chr7A 82.096 687 93 17 1210 1870 736000359 735999677 7.300000e-156 560.0
28 TraesCS7B01G380700 chr7A 77.803 874 156 22 1004 1850 735820892 735820030 3.470000e-139 505.0
29 TraesCS7B01G380700 chr7A 96.903 226 4 3 780 1003 608323538 608323762 2.840000e-100 375.0
30 TraesCS7B01G380700 chr7A 84.022 363 28 14 2580 2936 671422515 671422177 3.750000e-84 322.0
31 TraesCS7B01G380700 chr7A 93.865 163 10 0 2415 2577 628831000 628830838 2.320000e-61 246.0
32 TraesCS7B01G380700 chr1B 81.838 914 136 15 1003 1889 577924591 577923681 0.000000e+00 741.0
33 TraesCS7B01G380700 chr1B 82.839 775 128 3 1 774 577925371 577924601 0.000000e+00 689.0
34 TraesCS7B01G380700 chr1B 95.735 211 7 2 786 995 643042827 643043036 3.730000e-89 339.0
35 TraesCS7B01G380700 chr1A 97.642 212 3 2 786 996 566517100 566517310 2.210000e-96 363.0
36 TraesCS7B01G380700 chr2B 97.170 212 5 1 786 996 27548138 27547927 1.030000e-94 357.0
37 TraesCS7B01G380700 chr5A 96.226 212 7 1 786 996 560808249 560808460 2.230000e-91 346.0
38 TraesCS7B01G380700 chr3B 95.755 212 7 2 786 996 62672649 62672439 1.040000e-89 340.0
39 TraesCS7B01G380700 chr3B 93.976 166 10 0 2411 2576 177086361 177086526 4.990000e-63 252.0
40 TraesCS7B01G380700 chr6B 95.735 211 7 2 786 995 87674519 87674310 3.730000e-89 339.0
41 TraesCS7B01G380700 chr3A 93.103 174 11 1 2407 2579 687031615 687031442 1.390000e-63 254.0
42 TraesCS7B01G380700 chr2D 94.444 162 9 0 2412 2573 639533695 639533856 1.800000e-62 250.0
43 TraesCS7B01G380700 chr1D 93.865 163 10 0 2415 2577 193502751 193502589 2.320000e-61 246.0
44 TraesCS7B01G380700 chr5B 93.333 165 11 0 2412 2576 93221412 93221576 8.350000e-61 244.0
45 TraesCS7B01G380700 chr2A 93.827 162 10 0 2415 2576 11897878 11897717 8.350000e-61 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G380700 chr7B 645393973 645396989 3016 True 5572.0 5572 100.0000 1 3017 1 chr7B.!!$R1 3016
1 TraesCS7B01G380700 chr7B 743653895 743654819 924 False 673.0 673 80.3880 1001 1896 1 chr7B.!!$F3 895
2 TraesCS7B01G380700 chr7B 744210153 744210923 770 False 662.0 662 82.2390 1 774 1 chr7B.!!$F4 773
3 TraesCS7B01G380700 chr7B 747524689 747525461 772 True 652.0 652 82.0050 1 774 1 chr7B.!!$R3 773
4 TraesCS7B01G380700 chr7B 744251176 744252100 924 False 640.0 640 79.7410 1001 1896 1 chr7B.!!$F5 895
5 TraesCS7B01G380700 chr7B 744291137 744291924 787 True 531.0 531 79.4190 1001 1764 1 chr7B.!!$R2 763
6 TraesCS7B01G380700 chr7B 744335303 744336665 1362 True 517.0 662 82.1915 1 1803 2 chr7B.!!$R4 1802
7 TraesCS7B01G380700 chr7D 579758341 579761037 2696 True 802.3 1949 96.4520 1 3017 5 chr7D.!!$R2 3016
8 TraesCS7B01G380700 chr7D 621261709 621262479 770 False 743.0 743 84.1900 1 771 1 chr7D.!!$F3 770
9 TraesCS7B01G380700 chr7D 632035742 632036515 773 False 732.0 732 83.8250 1 774 1 chr7D.!!$F5 773
10 TraesCS7B01G380700 chr7D 555050914 555051821 907 False 719.0 719 81.5990 1001 1878 1 chr7D.!!$F1 877
11 TraesCS7B01G380700 chr7D 632099766 632100686 920 False 713.0 713 81.1890 1001 1896 1 chr7D.!!$F6 895
12 TraesCS7B01G380700 chr7D 632021902 632022780 878 False 695.0 695 81.4770 1039 1890 1 chr7D.!!$F4 851
13 TraesCS7B01G380700 chr7D 632143655 632144428 773 False 665.0 665 82.4200 1 774 1 chr7D.!!$F7 773
14 TraesCS7B01G380700 chr7A 671422177 671424642 2465 True 1081.0 1648 90.6020 1 2936 3 chr7A.!!$R5 2935
15 TraesCS7B01G380700 chr7A 736069904 736070824 920 True 747.0 747 81.8380 1001 1896 1 chr7A.!!$R4 895
16 TraesCS7B01G380700 chr7A 735929384 735930196 812 False 617.0 617 81.0280 1112 1896 1 chr7A.!!$F2 784
17 TraesCS7B01G380700 chr7A 735999677 736000359 682 True 560.0 560 82.0960 1210 1870 1 chr7A.!!$R3 660
18 TraesCS7B01G380700 chr7A 735820030 735820892 862 True 505.0 505 77.8030 1004 1850 1 chr7A.!!$R2 846
19 TraesCS7B01G380700 chr1B 577923681 577925371 1690 True 715.0 741 82.3385 1 1889 2 chr1B.!!$R1 1888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 788 0.034186 GATGTCTGCAACCATGGGGA 60.034 55.0 18.09 0.0 38.05 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2746 2867 0.032815 GCGGCCACTTCTATCCTCTC 59.967 60.0 2.24 0.0 0.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.928153 GTTTCTTCGGTTGACCATAGAAAG 58.072 41.667 19.04 7.80 41.54 2.62
397 398 3.134623 TCCCAGCATAAGTGTGATACCTG 59.865 47.826 0.00 0.00 0.00 4.00
520 521 8.711170 CCCAACTCAGGTTCCTTAGTTTATATA 58.289 37.037 13.68 0.00 30.78 0.86
580 581 4.662278 TGCTAGGCTTGGTGATAAAAAGT 58.338 39.130 0.00 0.00 0.00 2.66
777 778 2.439409 CCAACTTGGATGATGTCTGCA 58.561 47.619 0.92 0.00 40.96 4.41
778 779 2.821378 CCAACTTGGATGATGTCTGCAA 59.179 45.455 0.92 0.00 40.96 4.08
779 780 3.366679 CCAACTTGGATGATGTCTGCAAC 60.367 47.826 0.92 0.00 40.96 4.17
780 781 2.440409 ACTTGGATGATGTCTGCAACC 58.560 47.619 0.00 0.00 0.00 3.77
782 783 2.812836 TGGATGATGTCTGCAACCAT 57.187 45.000 0.00 0.00 0.00 3.55
785 786 1.679680 GATGATGTCTGCAACCATGGG 59.320 52.381 18.09 0.00 0.00 4.00
786 787 0.323633 TGATGTCTGCAACCATGGGG 60.324 55.000 18.09 9.11 41.29 4.96
787 788 0.034186 GATGTCTGCAACCATGGGGA 60.034 55.000 18.09 0.00 38.05 4.81
788 789 0.632835 ATGTCTGCAACCATGGGGAT 59.367 50.000 18.09 0.00 38.05 3.85
789 790 0.034186 TGTCTGCAACCATGGGGATC 60.034 55.000 18.09 2.62 38.05 3.36
790 791 0.753111 GTCTGCAACCATGGGGATCC 60.753 60.000 18.09 1.92 38.05 3.36
791 792 1.825191 CTGCAACCATGGGGATCCG 60.825 63.158 18.09 0.00 38.05 4.18
792 793 2.519302 GCAACCATGGGGATCCGG 60.519 66.667 18.09 3.55 38.05 5.14
793 794 2.519302 CAACCATGGGGATCCGGC 60.519 66.667 18.09 0.00 38.05 6.13
794 795 2.696125 AACCATGGGGATCCGGCT 60.696 61.111 18.09 0.00 38.05 5.52
795 796 2.316586 AACCATGGGGATCCGGCTT 61.317 57.895 18.09 0.00 38.05 4.35
796 797 2.203394 CCATGGGGATCCGGCTTG 60.203 66.667 2.85 0.73 35.59 4.01
797 798 2.908940 CATGGGGATCCGGCTTGC 60.909 66.667 5.45 0.00 35.24 4.01
798 799 4.209866 ATGGGGATCCGGCTTGCC 62.210 66.667 5.45 0.48 35.24 4.52
800 801 4.883354 GGGGATCCGGCTTGCCTG 62.883 72.222 5.45 3.29 0.00 4.85
802 803 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
803 804 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
804 805 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
808 809 4.811364 GGCTTGCCTGCTCCCTCC 62.811 72.222 4.11 0.00 0.00 4.30
809 810 4.811364 GCTTGCCTGCTCCCTCCC 62.811 72.222 0.00 0.00 0.00 4.30
810 811 4.120755 CTTGCCTGCTCCCTCCCC 62.121 72.222 0.00 0.00 0.00 4.81
812 813 4.765970 TGCCTGCTCCCTCCCCAT 62.766 66.667 0.00 0.00 0.00 4.00
813 814 4.201122 GCCTGCTCCCTCCCCATG 62.201 72.222 0.00 0.00 0.00 3.66
814 815 4.201122 CCTGCTCCCTCCCCATGC 62.201 72.222 0.00 0.00 0.00 4.06
815 816 3.095163 CTGCTCCCTCCCCATGCT 61.095 66.667 0.00 0.00 0.00 3.79
816 817 3.092511 TGCTCCCTCCCCATGCTC 61.093 66.667 0.00 0.00 0.00 4.26
817 818 3.883549 GCTCCCTCCCCATGCTCC 61.884 72.222 0.00 0.00 0.00 4.70
818 819 3.174265 CTCCCTCCCCATGCTCCC 61.174 72.222 0.00 0.00 0.00 4.30
819 820 4.037413 TCCCTCCCCATGCTCCCA 62.037 66.667 0.00 0.00 0.00 4.37
820 821 2.780040 CCCTCCCCATGCTCCCAT 60.780 66.667 0.00 0.00 0.00 4.00
821 822 2.838467 CCCTCCCCATGCTCCCATC 61.838 68.421 0.00 0.00 0.00 3.51
822 823 2.838467 CCTCCCCATGCTCCCATCC 61.838 68.421 0.00 0.00 0.00 3.51
823 824 3.170672 TCCCCATGCTCCCATCCG 61.171 66.667 0.00 0.00 0.00 4.18
824 825 3.492353 CCCCATGCTCCCATCCGT 61.492 66.667 0.00 0.00 0.00 4.69
825 826 2.203252 CCCATGCTCCCATCCGTG 60.203 66.667 0.00 0.00 0.00 4.94
826 827 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
827 828 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
828 829 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
829 830 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
830 831 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
831 832 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
832 833 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
833 834 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
834 835 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
835 836 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
836 837 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
837 838 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
838 839 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
839 840 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
840 841 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
841 842 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
842 843 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
843 844 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
844 845 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
845 846 1.486211 CTCCCACTTCATCCTACGGT 58.514 55.000 0.00 0.00 0.00 4.83
846 847 1.831736 CTCCCACTTCATCCTACGGTT 59.168 52.381 0.00 0.00 0.00 4.44
847 848 1.553248 TCCCACTTCATCCTACGGTTG 59.447 52.381 0.00 0.00 0.00 3.77
848 849 1.278127 CCCACTTCATCCTACGGTTGT 59.722 52.381 0.00 0.00 0.00 3.32
849 850 2.618053 CCACTTCATCCTACGGTTGTC 58.382 52.381 0.00 0.00 0.00 3.18
850 851 2.618053 CACTTCATCCTACGGTTGTCC 58.382 52.381 0.00 0.00 0.00 4.02
851 852 2.233922 CACTTCATCCTACGGTTGTCCT 59.766 50.000 0.00 0.00 0.00 3.85
852 853 2.904434 ACTTCATCCTACGGTTGTCCTT 59.096 45.455 0.00 0.00 0.00 3.36
853 854 3.326880 ACTTCATCCTACGGTTGTCCTTT 59.673 43.478 0.00 0.00 0.00 3.11
854 855 4.202430 ACTTCATCCTACGGTTGTCCTTTT 60.202 41.667 0.00 0.00 0.00 2.27
855 856 3.934068 TCATCCTACGGTTGTCCTTTTC 58.066 45.455 0.00 0.00 0.00 2.29
856 857 2.845363 TCCTACGGTTGTCCTTTTCC 57.155 50.000 0.00 0.00 0.00 3.13
857 858 1.348696 TCCTACGGTTGTCCTTTTCCC 59.651 52.381 0.00 0.00 0.00 3.97
858 859 1.350019 CCTACGGTTGTCCTTTTCCCT 59.650 52.381 0.00 0.00 0.00 4.20
859 860 2.224695 CCTACGGTTGTCCTTTTCCCTT 60.225 50.000 0.00 0.00 0.00 3.95
860 861 2.447408 ACGGTTGTCCTTTTCCCTTT 57.553 45.000 0.00 0.00 0.00 3.11
861 862 2.742348 ACGGTTGTCCTTTTCCCTTTT 58.258 42.857 0.00 0.00 0.00 2.27
862 863 3.101437 ACGGTTGTCCTTTTCCCTTTTT 58.899 40.909 0.00 0.00 0.00 1.94
863 864 3.131577 ACGGTTGTCCTTTTCCCTTTTTC 59.868 43.478 0.00 0.00 0.00 2.29
864 865 3.491964 CGGTTGTCCTTTTCCCTTTTTCC 60.492 47.826 0.00 0.00 0.00 3.13
865 866 3.709653 GGTTGTCCTTTTCCCTTTTTCCT 59.290 43.478 0.00 0.00 0.00 3.36
866 867 4.163458 GGTTGTCCTTTTCCCTTTTTCCTT 59.837 41.667 0.00 0.00 0.00 3.36
867 868 5.338871 GGTTGTCCTTTTCCCTTTTTCCTTT 60.339 40.000 0.00 0.00 0.00 3.11
868 869 5.607939 TGTCCTTTTCCCTTTTTCCTTTC 57.392 39.130 0.00 0.00 0.00 2.62
869 870 5.277250 TGTCCTTTTCCCTTTTTCCTTTCT 58.723 37.500 0.00 0.00 0.00 2.52
870 871 6.436890 TGTCCTTTTCCCTTTTTCCTTTCTA 58.563 36.000 0.00 0.00 0.00 2.10
871 872 6.898521 TGTCCTTTTCCCTTTTTCCTTTCTAA 59.101 34.615 0.00 0.00 0.00 2.10
872 873 7.567250 TGTCCTTTTCCCTTTTTCCTTTCTAAT 59.433 33.333 0.00 0.00 0.00 1.73
873 874 8.429641 GTCCTTTTCCCTTTTTCCTTTCTAATT 58.570 33.333 0.00 0.00 0.00 1.40
874 875 9.663365 TCCTTTTCCCTTTTTCCTTTCTAATTA 57.337 29.630 0.00 0.00 0.00 1.40
885 886 8.996651 TTTCCTTTCTAATTAATCATCTCCCC 57.003 34.615 0.00 0.00 0.00 4.81
886 887 7.091533 TCCTTTCTAATTAATCATCTCCCCC 57.908 40.000 0.00 0.00 0.00 5.40
906 907 2.159179 CCTGATTTTAAGGGGGTGGG 57.841 55.000 0.00 0.00 0.00 4.61
907 908 1.342975 CCTGATTTTAAGGGGGTGGGG 60.343 57.143 0.00 0.00 0.00 4.96
908 909 0.041982 TGATTTTAAGGGGGTGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
909 910 0.689745 GATTTTAAGGGGGTGGGGCC 60.690 60.000 0.00 0.00 0.00 5.80
910 911 2.523740 ATTTTAAGGGGGTGGGGCCG 62.524 60.000 0.00 0.00 38.44 6.13
923 924 4.027884 GGCCGGGCCTTATTTTGT 57.972 55.556 30.86 0.00 46.69 2.83
924 925 2.282827 GGCCGGGCCTTATTTTGTT 58.717 52.632 30.86 0.00 46.69 2.83
925 926 0.174845 GGCCGGGCCTTATTTTGTTC 59.825 55.000 30.86 0.00 46.69 3.18
926 927 0.174845 GCCGGGCCTTATTTTGTTCC 59.825 55.000 8.12 0.00 0.00 3.62
927 928 1.551452 CCGGGCCTTATTTTGTTCCA 58.449 50.000 0.84 0.00 0.00 3.53
928 929 1.896465 CCGGGCCTTATTTTGTTCCAA 59.104 47.619 0.84 0.00 0.00 3.53
929 930 2.499693 CCGGGCCTTATTTTGTTCCAAT 59.500 45.455 0.84 0.00 0.00 3.16
930 931 3.430236 CCGGGCCTTATTTTGTTCCAATC 60.430 47.826 0.84 0.00 0.00 2.67
931 932 3.194542 CGGGCCTTATTTTGTTCCAATCA 59.805 43.478 0.84 0.00 0.00 2.57
932 933 4.322349 CGGGCCTTATTTTGTTCCAATCAA 60.322 41.667 0.84 0.00 0.00 2.57
933 934 5.555966 GGGCCTTATTTTGTTCCAATCAAA 58.444 37.500 0.84 0.00 33.76 2.69
934 935 6.179756 GGGCCTTATTTTGTTCCAATCAAAT 58.820 36.000 0.84 0.00 35.25 2.32
935 936 6.316140 GGGCCTTATTTTGTTCCAATCAAATC 59.684 38.462 0.84 0.00 35.25 2.17
936 937 6.878389 GGCCTTATTTTGTTCCAATCAAATCA 59.122 34.615 0.00 0.00 35.25 2.57
937 938 7.553760 GGCCTTATTTTGTTCCAATCAAATCAT 59.446 33.333 0.00 0.00 35.25 2.45
938 939 8.392612 GCCTTATTTTGTTCCAATCAAATCATG 58.607 33.333 0.00 0.00 35.25 3.07
939 940 8.392612 CCTTATTTTGTTCCAATCAAATCATGC 58.607 33.333 0.00 0.00 35.25 4.06
940 941 6.746745 ATTTTGTTCCAATCAAATCATGCC 57.253 33.333 0.00 0.00 35.25 4.40
941 942 4.886496 TTGTTCCAATCAAATCATGCCA 57.114 36.364 0.00 0.00 0.00 4.92
942 943 4.191033 TGTTCCAATCAAATCATGCCAC 57.809 40.909 0.00 0.00 0.00 5.01
943 944 3.181397 GTTCCAATCAAATCATGCCACG 58.819 45.455 0.00 0.00 0.00 4.94
944 945 2.445427 TCCAATCAAATCATGCCACGT 58.555 42.857 0.00 0.00 0.00 4.49
945 946 3.615155 TCCAATCAAATCATGCCACGTA 58.385 40.909 0.00 0.00 0.00 3.57
946 947 4.206375 TCCAATCAAATCATGCCACGTAT 58.794 39.130 0.00 0.00 0.00 3.06
947 948 4.036616 TCCAATCAAATCATGCCACGTATG 59.963 41.667 0.00 0.00 0.00 2.39
948 949 3.631145 ATCAAATCATGCCACGTATGC 57.369 42.857 2.46 2.46 0.00 3.14
949 950 1.330213 TCAAATCATGCCACGTATGCG 59.670 47.619 0.19 0.19 44.93 4.73
950 951 0.662619 AAATCATGCCACGTATGCGG 59.337 50.000 8.39 0.00 43.45 5.69
951 952 1.165907 AATCATGCCACGTATGCGGG 61.166 55.000 8.39 2.48 43.45 6.13
952 953 2.038814 ATCATGCCACGTATGCGGGA 62.039 55.000 7.15 5.28 45.97 5.14
953 954 2.108976 ATGCCACGTATGCGGGAG 59.891 61.111 7.15 0.00 45.97 4.30
967 968 4.408821 GGAGCACGGATGGGCACA 62.409 66.667 0.00 0.00 0.00 4.57
968 969 3.127533 GAGCACGGATGGGCACAC 61.128 66.667 0.00 0.00 0.00 3.82
969 970 3.899981 GAGCACGGATGGGCACACA 62.900 63.158 0.00 0.00 0.00 3.72
970 971 3.737172 GCACGGATGGGCACACAC 61.737 66.667 0.00 0.00 0.00 3.82
971 972 3.422303 CACGGATGGGCACACACG 61.422 66.667 12.06 12.06 35.82 4.49
989 990 3.710722 CGGGGAGCAGGCAAGTCT 61.711 66.667 0.00 0.00 0.00 3.24
990 991 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
991 992 2.596851 GGGGAGCAGGCAAGTCTCA 61.597 63.158 0.00 0.00 0.00 3.27
992 993 1.606531 GGGAGCAGGCAAGTCTCAT 59.393 57.895 0.00 0.00 0.00 2.90
993 994 0.463474 GGGAGCAGGCAAGTCTCATC 60.463 60.000 0.00 0.00 0.00 2.92
994 995 0.463474 GGAGCAGGCAAGTCTCATCC 60.463 60.000 0.00 0.00 0.00 3.51
995 996 0.463474 GAGCAGGCAAGTCTCATCCC 60.463 60.000 0.00 0.00 0.00 3.85
996 997 1.817099 GCAGGCAAGTCTCATCCCG 60.817 63.158 0.00 0.00 0.00 5.14
997 998 1.900351 CAGGCAAGTCTCATCCCGA 59.100 57.895 0.00 0.00 0.00 5.14
1047 1048 3.848272 ATTATGTTTGTTGACCTGGCG 57.152 42.857 0.00 0.00 0.00 5.69
1121 1122 1.276622 AAGGTAGACCGTGCTCCATT 58.723 50.000 0.00 0.00 42.08 3.16
1155 1156 4.333417 GCTGGATTCTTGCAGGCT 57.667 55.556 0.00 0.00 41.31 4.58
1583 1606 6.341316 TGCGAGATATAAAGCCAAGGATATC 58.659 40.000 0.00 0.00 33.34 1.63
1648 1671 1.143684 ACAAGTTCAGCCATGTGGAGT 59.856 47.619 2.55 0.00 37.39 3.85
1728 1757 1.093159 GAGACAATGGCAAGCTGGAG 58.907 55.000 0.00 0.00 0.00 3.86
1783 1823 6.942576 AGGTACAGAAAATCAAGCATACAAGT 59.057 34.615 0.00 0.00 0.00 3.16
1829 1872 7.044181 CACTCTGATTCTGCCAGTTTATAAGA 58.956 38.462 0.00 0.00 33.57 2.10
1830 1873 7.010923 CACTCTGATTCTGCCAGTTTATAAGAC 59.989 40.741 0.00 0.00 33.57 3.01
2011 2056 1.924524 CATACCGACTACAAACAGCGG 59.075 52.381 0.00 0.00 46.83 5.52
2033 2078 2.897969 TCTAGGAAAGGAGAAAGTGCGT 59.102 45.455 0.00 0.00 0.00 5.24
2034 2079 4.082354 GTCTAGGAAAGGAGAAAGTGCGTA 60.082 45.833 0.00 0.00 0.00 4.42
2035 2080 3.764237 AGGAAAGGAGAAAGTGCGTAA 57.236 42.857 0.00 0.00 0.00 3.18
2036 2081 4.287766 AGGAAAGGAGAAAGTGCGTAAT 57.712 40.909 0.00 0.00 0.00 1.89
2037 2082 5.416271 AGGAAAGGAGAAAGTGCGTAATA 57.584 39.130 0.00 0.00 0.00 0.98
2038 2083 5.420409 AGGAAAGGAGAAAGTGCGTAATAG 58.580 41.667 0.00 0.00 0.00 1.73
2039 2084 4.571176 GGAAAGGAGAAAGTGCGTAATAGG 59.429 45.833 0.00 0.00 0.00 2.57
2040 2085 3.180891 AGGAGAAAGTGCGTAATAGGC 57.819 47.619 0.00 0.00 0.00 3.93
2069 2114 2.676748 AGCTAAGGAGATCAGACCAGG 58.323 52.381 0.00 0.00 0.00 4.45
2075 2120 4.899239 GATCAGACCAGGCCGCCG 62.899 72.222 3.05 0.00 0.00 6.46
2137 2182 5.448438 CGCAATTAGTAACTGTGCTTCAAA 58.552 37.500 11.28 0.00 32.99 2.69
2221 2266 2.030893 GTGTGCTAAGCAGAACATTGCA 60.031 45.455 0.52 0.00 42.54 4.08
2242 2287 4.261909 GCATATTAAAGCTGGCTCTTGCAT 60.262 41.667 0.00 0.00 41.91 3.96
2261 2306 3.696051 GCATATTTCCCTTTCTGTGCAGA 59.304 43.478 0.00 0.00 35.27 4.26
2270 2315 4.469883 CTGTGCAGACAGGCAGTT 57.530 55.556 0.00 0.00 45.96 3.16
2302 2356 1.300963 GGAGCCAGAGTTGCATCCA 59.699 57.895 0.00 0.00 0.00 3.41
2316 2370 7.560991 AGAGTTGCATCCACATATTCCAAATAA 59.439 33.333 0.00 0.00 0.00 1.40
2319 2373 7.658525 TGCATCCACATATTCCAAATAAGTT 57.341 32.000 0.00 0.00 0.00 2.66
2320 2374 7.715657 TGCATCCACATATTCCAAATAAGTTC 58.284 34.615 0.00 0.00 0.00 3.01
2327 2381 9.787532 CACATATTCCAAATAAGTTCGTTGATT 57.212 29.630 1.03 0.00 0.00 2.57
2333 2387 7.136119 TCCAAATAAGTTCGTTGATTGTGAAC 58.864 34.615 1.03 0.00 41.71 3.18
2338 2392 3.026349 GTTCGTTGATTGTGAACGTGTG 58.974 45.455 0.00 0.00 45.09 3.82
2411 2531 7.466746 TGTCCTGAAAAGGATTAAATCTTGG 57.533 36.000 0.00 0.00 40.51 3.61
2412 2532 6.437162 TGTCCTGAAAAGGATTAAATCTTGGG 59.563 38.462 0.00 0.00 40.51 4.12
2413 2533 6.437477 GTCCTGAAAAGGATTAAATCTTGGGT 59.563 38.462 0.00 0.00 40.51 4.51
2414 2534 7.614192 GTCCTGAAAAGGATTAAATCTTGGGTA 59.386 37.037 0.00 0.00 40.51 3.69
2415 2535 8.174085 TCCTGAAAAGGATTAAATCTTGGGTAA 58.826 33.333 0.00 0.00 32.09 2.85
2416 2536 8.811994 CCTGAAAAGGATTAAATCTTGGGTAAA 58.188 33.333 0.00 0.00 0.00 2.01
2429 2549 9.791801 AAATCTTGGGTAAATTTTAACATGCTT 57.208 25.926 6.54 0.96 0.00 3.91
2430 2550 9.435688 AATCTTGGGTAAATTTTAACATGCTTC 57.564 29.630 6.54 0.00 0.00 3.86
2431 2551 7.382898 TCTTGGGTAAATTTTAACATGCTTCC 58.617 34.615 6.54 0.00 0.00 3.46
2432 2552 6.926630 TGGGTAAATTTTAACATGCTTCCT 57.073 33.333 6.54 0.00 0.00 3.36
2433 2553 6.930731 TGGGTAAATTTTAACATGCTTCCTC 58.069 36.000 6.54 0.00 0.00 3.71
2434 2554 6.723977 TGGGTAAATTTTAACATGCTTCCTCT 59.276 34.615 6.54 0.00 0.00 3.69
2435 2555 7.234577 TGGGTAAATTTTAACATGCTTCCTCTT 59.765 33.333 6.54 0.00 0.00 2.85
2436 2556 8.745590 GGGTAAATTTTAACATGCTTCCTCTTA 58.254 33.333 6.54 0.00 0.00 2.10
2437 2557 9.569167 GGTAAATTTTAACATGCTTCCTCTTAC 57.431 33.333 0.00 0.00 0.00 2.34
2438 2558 9.569167 GTAAATTTTAACATGCTTCCTCTTACC 57.431 33.333 0.00 0.00 0.00 2.85
2439 2559 6.775594 ATTTTAACATGCTTCCTCTTACCC 57.224 37.500 0.00 0.00 0.00 3.69
2440 2560 2.808906 AACATGCTTCCTCTTACCCC 57.191 50.000 0.00 0.00 0.00 4.95
2441 2561 0.919710 ACATGCTTCCTCTTACCCCC 59.080 55.000 0.00 0.00 0.00 5.40
2442 2562 1.216990 CATGCTTCCTCTTACCCCCT 58.783 55.000 0.00 0.00 0.00 4.79
2443 2563 1.141858 CATGCTTCCTCTTACCCCCTC 59.858 57.143 0.00 0.00 0.00 4.30
2444 2564 0.417841 TGCTTCCTCTTACCCCCTCT 59.582 55.000 0.00 0.00 0.00 3.69
2445 2565 1.203440 TGCTTCCTCTTACCCCCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
2446 2566 1.916874 GCTTCCTCTTACCCCCTCTTT 59.083 52.381 0.00 0.00 0.00 2.52
2447 2567 2.309162 GCTTCCTCTTACCCCCTCTTTT 59.691 50.000 0.00 0.00 0.00 2.27
2448 2568 3.245300 GCTTCCTCTTACCCCCTCTTTTT 60.245 47.826 0.00 0.00 0.00 1.94
2449 2569 4.018688 GCTTCCTCTTACCCCCTCTTTTTA 60.019 45.833 0.00 0.00 0.00 1.52
2450 2570 5.498393 CTTCCTCTTACCCCCTCTTTTTAC 58.502 45.833 0.00 0.00 0.00 2.01
2451 2571 4.505367 TCCTCTTACCCCCTCTTTTTACA 58.495 43.478 0.00 0.00 0.00 2.41
2452 2572 5.105853 TCCTCTTACCCCCTCTTTTTACAT 58.894 41.667 0.00 0.00 0.00 2.29
2453 2573 5.045140 TCCTCTTACCCCCTCTTTTTACATG 60.045 44.000 0.00 0.00 0.00 3.21
2454 2574 5.281037 CCTCTTACCCCCTCTTTTTACATGT 60.281 44.000 2.69 2.69 0.00 3.21
2455 2575 5.566469 TCTTACCCCCTCTTTTTACATGTG 58.434 41.667 9.11 0.00 0.00 3.21
2456 2576 5.311121 TCTTACCCCCTCTTTTTACATGTGA 59.689 40.000 9.11 0.00 0.00 3.58
2457 2577 4.034285 ACCCCCTCTTTTTACATGTGAG 57.966 45.455 9.11 5.88 0.00 3.51
2458 2578 3.245264 ACCCCCTCTTTTTACATGTGAGG 60.245 47.826 18.10 18.10 42.72 3.86
2459 2579 3.245264 CCCCCTCTTTTTACATGTGAGGT 60.245 47.826 21.48 0.00 41.83 3.85
2460 2580 4.018779 CCCCCTCTTTTTACATGTGAGGTA 60.019 45.833 21.48 0.00 41.83 3.08
2461 2581 5.515886 CCCCCTCTTTTTACATGTGAGGTAA 60.516 44.000 21.48 1.75 41.83 2.85
2462 2582 5.648092 CCCCTCTTTTTACATGTGAGGTAAG 59.352 44.000 21.48 12.78 41.83 2.34
2463 2583 6.472887 CCCTCTTTTTACATGTGAGGTAAGA 58.527 40.000 21.48 15.35 41.83 2.10
2464 2584 6.940298 CCCTCTTTTTACATGTGAGGTAAGAA 59.060 38.462 21.48 5.18 41.83 2.52
2465 2585 7.611855 CCCTCTTTTTACATGTGAGGTAAGAAT 59.388 37.037 21.48 0.00 41.83 2.40
2466 2586 9.667107 CCTCTTTTTACATGTGAGGTAAGAATA 57.333 33.333 17.20 0.00 39.39 1.75
2505 2625 9.331282 AGACCACTAATTAATGAGATTAACAGC 57.669 33.333 6.84 0.00 37.53 4.40
2506 2626 9.331282 GACCACTAATTAATGAGATTAACAGCT 57.669 33.333 6.84 0.00 37.53 4.24
2507 2627 9.331282 ACCACTAATTAATGAGATTAACAGCTC 57.669 33.333 6.84 0.00 37.53 4.09
2508 2628 9.330063 CCACTAATTAATGAGATTAACAGCTCA 57.670 33.333 6.84 6.89 44.43 4.26
2544 2664 6.672266 ACTCTTACCTCTCATGTGAAAAGA 57.328 37.500 12.55 12.55 0.00 2.52
2545 2665 6.696411 ACTCTTACCTCTCATGTGAAAAGAG 58.304 40.000 24.85 24.85 42.67 2.85
2549 2669 2.996631 CTCTCATGTGAAAAGAGGGGG 58.003 52.381 0.00 0.00 34.24 5.40
2550 2670 2.307098 CTCTCATGTGAAAAGAGGGGGT 59.693 50.000 0.00 0.00 34.24 4.95
2551 2671 3.519510 CTCTCATGTGAAAAGAGGGGGTA 59.480 47.826 0.00 0.00 34.24 3.69
2552 2672 3.913799 TCTCATGTGAAAAGAGGGGGTAA 59.086 43.478 0.00 0.00 0.00 2.85
2553 2673 4.019321 TCTCATGTGAAAAGAGGGGGTAAG 60.019 45.833 0.00 0.00 0.00 2.34
2554 2674 3.913799 TCATGTGAAAAGAGGGGGTAAGA 59.086 43.478 0.00 0.00 0.00 2.10
2555 2675 4.019321 TCATGTGAAAAGAGGGGGTAAGAG 60.019 45.833 0.00 0.00 0.00 2.85
2556 2676 2.642807 TGTGAAAAGAGGGGGTAAGAGG 59.357 50.000 0.00 0.00 0.00 3.69
2557 2677 2.026169 GTGAAAAGAGGGGGTAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
2558 2678 2.157911 TGAAAAGAGGGGGTAAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
2559 2679 2.272074 AAAGAGGGGGTAAGAGGGAG 57.728 55.000 0.00 0.00 0.00 4.30
2560 2680 0.326713 AAGAGGGGGTAAGAGGGAGC 60.327 60.000 0.00 0.00 0.00 4.70
2561 2681 1.003051 GAGGGGGTAAGAGGGAGCA 59.997 63.158 0.00 0.00 0.00 4.26
2562 2682 0.400670 GAGGGGGTAAGAGGGAGCAT 60.401 60.000 0.00 0.00 0.00 3.79
2563 2683 0.695803 AGGGGGTAAGAGGGAGCATG 60.696 60.000 0.00 0.00 0.00 4.06
2564 2684 0.988678 GGGGGTAAGAGGGAGCATGT 60.989 60.000 0.00 0.00 0.00 3.21
2565 2685 0.919710 GGGGTAAGAGGGAGCATGTT 59.080 55.000 0.00 0.00 0.00 2.71
2566 2686 2.124411 GGGGTAAGAGGGAGCATGTTA 58.876 52.381 0.00 0.00 0.00 2.41
2567 2687 2.508300 GGGGTAAGAGGGAGCATGTTAA 59.492 50.000 0.00 0.00 0.00 2.01
2568 2688 3.053917 GGGGTAAGAGGGAGCATGTTAAA 60.054 47.826 0.00 0.00 0.00 1.52
2569 2689 4.569015 GGGGTAAGAGGGAGCATGTTAAAA 60.569 45.833 0.00 0.00 0.00 1.52
2570 2690 4.398358 GGGTAAGAGGGAGCATGTTAAAAC 59.602 45.833 0.00 0.00 0.00 2.43
2571 2691 5.254115 GGTAAGAGGGAGCATGTTAAAACT 58.746 41.667 0.00 0.00 0.00 2.66
2572 2692 5.123979 GGTAAGAGGGAGCATGTTAAAACTG 59.876 44.000 0.00 0.00 0.00 3.16
2573 2693 3.084786 AGAGGGAGCATGTTAAAACTGC 58.915 45.455 0.00 8.36 35.05 4.40
2574 2694 3.084786 GAGGGAGCATGTTAAAACTGCT 58.915 45.455 15.13 15.13 42.14 4.24
2575 2695 3.084786 AGGGAGCATGTTAAAACTGCTC 58.915 45.455 24.03 24.03 46.90 4.26
2576 2696 3.084786 GGGAGCATGTTAAAACTGCTCT 58.915 45.455 27.22 10.45 46.85 4.09
2609 2729 4.332268 GGAGATTCTTTCACAGCATGACTC 59.668 45.833 0.00 0.00 39.69 3.36
2611 2731 3.490439 TTCTTTCACAGCATGACTCCA 57.510 42.857 0.00 0.00 39.69 3.86
2612 2732 3.049708 TCTTTCACAGCATGACTCCAG 57.950 47.619 0.00 0.00 39.69 3.86
2613 2733 1.467734 CTTTCACAGCATGACTCCAGC 59.532 52.381 0.00 0.00 39.69 4.85
2614 2734 0.397564 TTCACAGCATGACTCCAGCA 59.602 50.000 0.00 0.00 39.69 4.41
2635 2756 5.011943 AGCAAATTTTCCACATGCCTCTTTA 59.988 36.000 0.00 0.00 37.73 1.85
2651 2772 6.378280 TGCCTCTTTAAAGATTCCCTGAAATC 59.622 38.462 18.02 0.00 36.16 2.17
2788 2914 3.857052 TGATCACGTATGGGAGAACAAC 58.143 45.455 0.00 0.00 0.00 3.32
2931 3059 5.352284 ACGACTAATTAAGAGGCATCACTG 58.648 41.667 0.00 0.00 0.00 3.66
2941 3069 0.593128 GGCATCACTGACCACAACAC 59.407 55.000 0.00 0.00 0.00 3.32
2951 3079 4.056050 CTGACCACAACACTGTTACCTAC 58.944 47.826 0.00 0.00 31.64 3.18
2952 3080 3.054878 GACCACAACACTGTTACCTACG 58.945 50.000 0.00 0.00 31.64 3.51
2953 3081 2.224113 ACCACAACACTGTTACCTACGG 60.224 50.000 0.00 0.00 39.17 4.02
2955 3083 3.314553 CACAACACTGTTACCTACGGAG 58.685 50.000 0.00 0.00 36.57 4.63
2956 3084 2.961062 ACAACACTGTTACCTACGGAGT 59.039 45.455 0.00 0.00 38.40 3.85
2957 3085 3.243636 ACAACACTGTTACCTACGGAGTG 60.244 47.826 0.00 0.00 37.08 3.51
2958 3086 2.867624 ACACTGTTACCTACGGAGTGA 58.132 47.619 0.00 0.00 45.73 3.41
2959 3087 3.428532 ACACTGTTACCTACGGAGTGAT 58.571 45.455 0.00 0.00 45.73 3.06
2960 3088 3.830755 ACACTGTTACCTACGGAGTGATT 59.169 43.478 0.00 0.00 45.73 2.57
2961 3089 5.012239 ACACTGTTACCTACGGAGTGATTA 58.988 41.667 0.00 0.00 45.73 1.75
2962 3090 5.477984 ACACTGTTACCTACGGAGTGATTAA 59.522 40.000 0.00 0.00 45.73 1.40
2963 3091 6.034591 CACTGTTACCTACGGAGTGATTAAG 58.965 44.000 0.00 0.00 45.73 1.85
2964 3092 5.948162 ACTGTTACCTACGGAGTGATTAAGA 59.052 40.000 0.00 0.00 45.73 2.10
2965 3093 6.095160 ACTGTTACCTACGGAGTGATTAAGAG 59.905 42.308 0.00 0.00 45.73 2.85
2966 3094 5.359009 TGTTACCTACGGAGTGATTAAGAGG 59.641 44.000 0.00 0.00 45.73 3.69
2967 3095 2.694109 ACCTACGGAGTGATTAAGAGGC 59.306 50.000 0.00 0.00 45.73 4.70
2968 3096 2.959707 CCTACGGAGTGATTAAGAGGCT 59.040 50.000 0.00 0.00 45.73 4.58
2969 3097 4.142790 CCTACGGAGTGATTAAGAGGCTA 58.857 47.826 0.00 0.00 45.73 3.93
2970 3098 4.583489 CCTACGGAGTGATTAAGAGGCTAA 59.417 45.833 0.00 0.00 45.73 3.09
2971 3099 4.388378 ACGGAGTGATTAAGAGGCTAAC 57.612 45.455 0.00 0.00 42.51 2.34
2972 3100 4.024670 ACGGAGTGATTAAGAGGCTAACT 58.975 43.478 0.00 0.00 42.51 2.24
2973 3101 4.142138 ACGGAGTGATTAAGAGGCTAACTG 60.142 45.833 0.00 0.00 42.51 3.16
2974 3102 4.698575 GGAGTGATTAAGAGGCTAACTGG 58.301 47.826 0.00 0.00 0.00 4.00
2975 3103 4.406003 GGAGTGATTAAGAGGCTAACTGGA 59.594 45.833 0.00 0.00 0.00 3.86
2976 3104 5.346181 AGTGATTAAGAGGCTAACTGGAC 57.654 43.478 0.00 0.00 0.00 4.02
2977 3105 5.026790 AGTGATTAAGAGGCTAACTGGACT 58.973 41.667 0.00 0.00 0.00 3.85
2978 3106 5.105146 AGTGATTAAGAGGCTAACTGGACTG 60.105 44.000 0.00 0.00 0.00 3.51
2979 3107 5.023452 TGATTAAGAGGCTAACTGGACTGA 58.977 41.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
520 521 3.375299 GCAGCAGATACGTTCTCCAATTT 59.625 43.478 0.00 0.00 29.93 1.82
580 581 9.973450 GCAGAATAAAGACAGTCTGATAAGATA 57.027 33.333 6.91 0.00 41.92 1.98
777 778 2.316586 AAGCCGGATCCCCATGGTT 61.317 57.895 5.05 1.60 0.00 3.67
778 779 2.696125 AAGCCGGATCCCCATGGT 60.696 61.111 5.05 0.00 0.00 3.55
779 780 2.203394 CAAGCCGGATCCCCATGG 60.203 66.667 5.05 4.14 0.00 3.66
780 781 2.908940 GCAAGCCGGATCCCCATG 60.909 66.667 5.05 2.07 0.00 3.66
785 786 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
786 787 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
787 788 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
791 792 4.811364 GGAGGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
792 793 4.811364 GGGAGGGAGCAGGCAAGC 62.811 72.222 0.00 0.00 0.00 4.01
793 794 4.120755 GGGGAGGGAGCAGGCAAG 62.121 72.222 0.00 0.00 0.00 4.01
795 796 4.765970 ATGGGGAGGGAGCAGGCA 62.766 66.667 0.00 0.00 0.00 4.75
796 797 4.201122 CATGGGGAGGGAGCAGGC 62.201 72.222 0.00 0.00 0.00 4.85
797 798 4.201122 GCATGGGGAGGGAGCAGG 62.201 72.222 0.00 0.00 0.00 4.85
798 799 3.095163 AGCATGGGGAGGGAGCAG 61.095 66.667 0.00 0.00 0.00 4.24
799 800 3.092511 GAGCATGGGGAGGGAGCA 61.093 66.667 0.00 0.00 0.00 4.26
800 801 3.883549 GGAGCATGGGGAGGGAGC 61.884 72.222 0.00 0.00 0.00 4.70
801 802 3.174265 GGGAGCATGGGGAGGGAG 61.174 72.222 0.00 0.00 0.00 4.30
802 803 3.367604 ATGGGAGCATGGGGAGGGA 62.368 63.158 0.00 0.00 0.00 4.20
803 804 2.780040 ATGGGAGCATGGGGAGGG 60.780 66.667 0.00 0.00 0.00 4.30
804 805 2.838467 GGATGGGAGCATGGGGAGG 61.838 68.421 0.00 0.00 0.00 4.30
805 806 2.842058 GGATGGGAGCATGGGGAG 59.158 66.667 0.00 0.00 0.00 4.30
806 807 3.170672 CGGATGGGAGCATGGGGA 61.171 66.667 0.00 0.00 0.00 4.81
807 808 3.492353 ACGGATGGGAGCATGGGG 61.492 66.667 0.00 0.00 0.00 4.96
808 809 2.203252 CACGGATGGGAGCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
809 810 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
810 811 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
811 812 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
812 813 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
813 814 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
814 815 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
815 816 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
816 817 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
817 818 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
818 819 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
819 820 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
820 821 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
821 822 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
822 823 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
823 824 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
824 825 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
825 826 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
839 840 2.853235 AGGGAAAAGGACAACCGTAG 57.147 50.000 0.00 0.00 41.83 3.51
840 841 3.581265 AAAGGGAAAAGGACAACCGTA 57.419 42.857 0.00 0.00 41.83 4.02
841 842 2.447408 AAAGGGAAAAGGACAACCGT 57.553 45.000 0.00 0.00 41.83 4.83
842 843 3.491964 GGAAAAAGGGAAAAGGACAACCG 60.492 47.826 0.00 0.00 41.83 4.44
843 844 3.709653 AGGAAAAAGGGAAAAGGACAACC 59.290 43.478 0.00 0.00 0.00 3.77
844 845 5.353394 AAGGAAAAAGGGAAAAGGACAAC 57.647 39.130 0.00 0.00 0.00 3.32
845 846 5.724370 AGAAAGGAAAAAGGGAAAAGGACAA 59.276 36.000 0.00 0.00 0.00 3.18
846 847 5.277250 AGAAAGGAAAAAGGGAAAAGGACA 58.723 37.500 0.00 0.00 0.00 4.02
847 848 5.871396 AGAAAGGAAAAAGGGAAAAGGAC 57.129 39.130 0.00 0.00 0.00 3.85
848 849 8.561536 AATTAGAAAGGAAAAAGGGAAAAGGA 57.438 30.769 0.00 0.00 0.00 3.36
859 860 9.421399 GGGGAGATGATTAATTAGAAAGGAAAA 57.579 33.333 0.00 0.00 0.00 2.29
860 861 8.004801 GGGGGAGATGATTAATTAGAAAGGAAA 58.995 37.037 0.00 0.00 0.00 3.13
861 862 7.526918 GGGGGAGATGATTAATTAGAAAGGAA 58.473 38.462 0.00 0.00 0.00 3.36
862 863 7.091533 GGGGGAGATGATTAATTAGAAAGGA 57.908 40.000 0.00 0.00 0.00 3.36
887 888 1.342975 CCCCACCCCCTTAAAATCAGG 60.343 57.143 0.00 0.00 0.00 3.86
888 889 1.964830 GCCCCACCCCCTTAAAATCAG 60.965 57.143 0.00 0.00 0.00 2.90
889 890 0.041982 GCCCCACCCCCTTAAAATCA 59.958 55.000 0.00 0.00 0.00 2.57
890 891 0.689745 GGCCCCACCCCCTTAAAATC 60.690 60.000 0.00 0.00 0.00 2.17
891 892 1.394557 GGCCCCACCCCCTTAAAAT 59.605 57.895 0.00 0.00 0.00 1.82
892 893 2.863275 GGCCCCACCCCCTTAAAA 59.137 61.111 0.00 0.00 0.00 1.52
893 894 3.663806 CGGCCCCACCCCCTTAAA 61.664 66.667 0.00 0.00 33.26 1.52
907 908 0.174845 GGAACAAAATAAGGCCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
908 909 1.551452 TGGAACAAAATAAGGCCCGG 58.449 50.000 0.00 0.00 31.92 5.73
921 922 3.367190 CGTGGCATGATTTGATTGGAACA 60.367 43.478 0.00 0.00 0.00 3.18
922 923 3.181397 CGTGGCATGATTTGATTGGAAC 58.819 45.455 0.00 0.00 0.00 3.62
923 924 2.824936 ACGTGGCATGATTTGATTGGAA 59.175 40.909 14.82 0.00 0.00 3.53
924 925 2.445427 ACGTGGCATGATTTGATTGGA 58.555 42.857 14.82 0.00 0.00 3.53
925 926 2.945447 ACGTGGCATGATTTGATTGG 57.055 45.000 14.82 0.00 0.00 3.16
926 927 3.732219 GCATACGTGGCATGATTTGATTG 59.268 43.478 14.82 1.54 0.00 2.67
927 928 3.548616 CGCATACGTGGCATGATTTGATT 60.549 43.478 14.82 0.00 33.53 2.57
928 929 2.031769 CGCATACGTGGCATGATTTGAT 60.032 45.455 14.82 0.00 33.53 2.57
929 930 1.330213 CGCATACGTGGCATGATTTGA 59.670 47.619 14.82 0.00 33.53 2.69
930 931 1.597690 CCGCATACGTGGCATGATTTG 60.598 52.381 14.82 8.58 35.59 2.32
931 932 0.662619 CCGCATACGTGGCATGATTT 59.337 50.000 14.82 0.00 35.59 2.17
932 933 1.165907 CCCGCATACGTGGCATGATT 61.166 55.000 14.82 0.00 41.87 2.57
933 934 1.597854 CCCGCATACGTGGCATGAT 60.598 57.895 14.82 0.00 41.87 2.45
934 935 2.203001 CCCGCATACGTGGCATGA 60.203 61.111 14.82 0.00 41.87 3.07
935 936 2.203001 TCCCGCATACGTGGCATG 60.203 61.111 4.87 4.87 41.87 4.06
936 937 2.108976 CTCCCGCATACGTGGCAT 59.891 61.111 13.38 0.00 41.87 4.40
937 938 4.830765 GCTCCCGCATACGTGGCA 62.831 66.667 13.38 0.00 41.87 4.92
938 939 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
950 951 4.408821 TGTGCCCATCCGTGCTCC 62.409 66.667 0.00 0.00 0.00 4.70
951 952 3.127533 GTGTGCCCATCCGTGCTC 61.128 66.667 0.00 0.00 0.00 4.26
952 953 3.952508 TGTGTGCCCATCCGTGCT 61.953 61.111 0.00 0.00 0.00 4.40
953 954 3.737172 GTGTGTGCCCATCCGTGC 61.737 66.667 0.00 0.00 0.00 5.34
954 955 3.422303 CGTGTGTGCCCATCCGTG 61.422 66.667 0.00 0.00 0.00 4.94
972 973 3.672295 GAGACTTGCCTGCTCCCCG 62.672 68.421 0.00 0.00 0.00 5.73
973 974 1.919600 ATGAGACTTGCCTGCTCCCC 61.920 60.000 0.00 0.00 0.00 4.81
974 975 0.463474 GATGAGACTTGCCTGCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
975 976 0.463474 GGATGAGACTTGCCTGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
976 977 0.463474 GGGATGAGACTTGCCTGCTC 60.463 60.000 0.00 0.00 0.00 4.26
977 978 1.606531 GGGATGAGACTTGCCTGCT 59.393 57.895 0.00 0.00 0.00 4.24
978 979 1.817099 CGGGATGAGACTTGCCTGC 60.817 63.158 0.00 0.00 0.00 4.85
979 980 0.460987 GTCGGGATGAGACTTGCCTG 60.461 60.000 0.00 0.00 35.84 4.85
980 981 1.617947 GGTCGGGATGAGACTTGCCT 61.618 60.000 0.00 0.00 38.58 4.75
981 982 1.153349 GGTCGGGATGAGACTTGCC 60.153 63.158 0.00 0.00 38.58 4.52
982 983 0.179000 ATGGTCGGGATGAGACTTGC 59.821 55.000 0.00 0.00 38.58 4.01
983 984 1.473965 CCATGGTCGGGATGAGACTTG 60.474 57.143 2.57 0.00 38.58 3.16
984 985 0.833287 CCATGGTCGGGATGAGACTT 59.167 55.000 2.57 0.00 38.58 3.01
985 986 0.325671 ACCATGGTCGGGATGAGACT 60.326 55.000 13.00 0.00 38.58 3.24
986 987 0.179073 CACCATGGTCGGGATGAGAC 60.179 60.000 16.53 0.00 37.86 3.36
987 988 1.971505 GCACCATGGTCGGGATGAGA 61.972 60.000 16.53 0.00 0.00 3.27
988 989 1.524621 GCACCATGGTCGGGATGAG 60.525 63.158 16.53 1.82 0.00 2.90
989 990 2.589540 GCACCATGGTCGGGATGA 59.410 61.111 16.53 0.00 0.00 2.92
990 991 2.516930 GGCACCATGGTCGGGATG 60.517 66.667 16.53 3.59 0.00 3.51
1047 1048 1.845809 CGGGAAGTTGTCTGCAGCAC 61.846 60.000 9.47 9.02 0.00 4.40
1121 1122 2.350895 CCCCAACACGCCTGATGA 59.649 61.111 0.00 0.00 0.00 2.92
1155 1156 1.153449 CGGAAATGGAGTAGCCGCA 60.153 57.895 0.00 0.00 40.66 5.69
1161 1162 6.155565 TCTCATTTAACCTCGGAAATGGAGTA 59.844 38.462 7.32 0.00 41.40 2.59
1376 1377 1.882623 GCTCAACAACAGAAGGAAGGG 59.117 52.381 0.00 0.00 0.00 3.95
1378 1379 4.816385 TGTAAGCTCAACAACAGAAGGAAG 59.184 41.667 0.00 0.00 0.00 3.46
1583 1606 1.723542 CGGCTAATGAAGATAGCAGCG 59.276 52.381 7.73 0.02 46.01 5.18
1648 1671 4.716794 TCACATGCATATGCCTTGACATA 58.283 39.130 25.89 8.32 41.18 2.29
1728 1757 4.238514 CGGTAGAGCTGCTAATATTGGAC 58.761 47.826 0.15 0.00 0.00 4.02
1783 1823 8.250332 AGAGTGCTCAAACAAATTAAGACAAAA 58.750 29.630 1.82 0.00 0.00 2.44
1829 1872 5.574188 AGGCAGGAGATAAAATCAAACTGT 58.426 37.500 0.00 0.00 32.66 3.55
1830 1873 6.521151 AAGGCAGGAGATAAAATCAAACTG 57.479 37.500 0.00 0.00 32.98 3.16
2011 2056 3.254892 CGCACTTTCTCCTTTCCTAGAC 58.745 50.000 0.00 0.00 0.00 2.59
2033 2078 6.732487 TCCTTAGCTAGCTATCAGCCTATTA 58.268 40.000 24.69 5.36 43.77 0.98
2034 2079 5.584913 TCCTTAGCTAGCTATCAGCCTATT 58.415 41.667 24.69 0.00 43.77 1.73
2035 2080 5.044476 TCTCCTTAGCTAGCTATCAGCCTAT 60.044 44.000 24.69 0.00 43.77 2.57
2036 2081 4.289934 TCTCCTTAGCTAGCTATCAGCCTA 59.710 45.833 24.69 7.53 43.77 3.93
2037 2082 3.075283 TCTCCTTAGCTAGCTATCAGCCT 59.925 47.826 24.69 0.00 43.77 4.58
2038 2083 3.426615 TCTCCTTAGCTAGCTATCAGCC 58.573 50.000 24.69 0.00 43.77 4.85
2039 2084 4.704540 TGATCTCCTTAGCTAGCTATCAGC 59.295 45.833 24.69 10.42 42.84 4.26
2040 2085 6.094048 GTCTGATCTCCTTAGCTAGCTATCAG 59.906 46.154 30.40 30.40 33.19 2.90
2075 2120 4.578105 CAGATTAATTTCACTGGAGAGGCC 59.422 45.833 0.00 0.00 37.10 5.19
2076 2121 5.747951 CAGATTAATTTCACTGGAGAGGC 57.252 43.478 0.00 0.00 0.00 4.70
2117 2162 6.072728 TGCGATTTGAAGCACAGTTACTAATT 60.073 34.615 0.00 0.00 38.59 1.40
2137 2182 2.993899 CAACTAAGAACGGAACTGCGAT 59.006 45.455 0.00 0.00 0.00 4.58
2221 2266 7.771927 AATATGCAAGAGCCAGCTTTAATAT 57.228 32.000 0.00 0.00 41.13 1.28
2242 2287 4.365514 TGTCTGCACAGAAAGGGAAATA 57.634 40.909 1.05 0.00 39.48 1.40
2268 2313 1.304381 TCCATTGCCAGCCAGGAAC 60.304 57.895 0.00 0.00 41.22 3.62
2270 2315 2.679092 CTCCATTGCCAGCCAGGA 59.321 61.111 0.00 0.00 41.22 3.86
2302 2356 9.787532 CAATCAACGAACTTATTTGGAATATGT 57.212 29.630 0.00 0.00 0.00 2.29
2327 2381 7.595502 ACAGAAAAATTAAAACACACGTTCACA 59.404 29.630 0.00 0.00 32.91 3.58
2411 2531 9.569167 GTAAGAGGAAGCATGTTAAAATTTACC 57.431 33.333 0.00 0.00 0.00 2.85
2412 2532 9.569167 GGTAAGAGGAAGCATGTTAAAATTTAC 57.431 33.333 0.00 0.00 0.00 2.01
2413 2533 8.745590 GGGTAAGAGGAAGCATGTTAAAATTTA 58.254 33.333 0.00 0.00 0.00 1.40
2414 2534 7.310423 GGGGTAAGAGGAAGCATGTTAAAATTT 60.310 37.037 0.00 0.00 0.00 1.82
2415 2535 6.154534 GGGGTAAGAGGAAGCATGTTAAAATT 59.845 38.462 0.00 0.00 0.00 1.82
2416 2536 5.656859 GGGGTAAGAGGAAGCATGTTAAAAT 59.343 40.000 0.00 0.00 0.00 1.82
2417 2537 5.014202 GGGGTAAGAGGAAGCATGTTAAAA 58.986 41.667 0.00 0.00 0.00 1.52
2418 2538 4.569015 GGGGGTAAGAGGAAGCATGTTAAA 60.569 45.833 0.00 0.00 0.00 1.52
2419 2539 3.053917 GGGGGTAAGAGGAAGCATGTTAA 60.054 47.826 0.00 0.00 0.00 2.01
2420 2540 2.508300 GGGGGTAAGAGGAAGCATGTTA 59.492 50.000 0.00 0.00 0.00 2.41
2421 2541 1.285078 GGGGGTAAGAGGAAGCATGTT 59.715 52.381 0.00 0.00 0.00 2.71
2422 2542 0.919710 GGGGGTAAGAGGAAGCATGT 59.080 55.000 0.00 0.00 0.00 3.21
2423 2543 1.141858 GAGGGGGTAAGAGGAAGCATG 59.858 57.143 0.00 0.00 0.00 4.06
2424 2544 1.010170 AGAGGGGGTAAGAGGAAGCAT 59.990 52.381 0.00 0.00 0.00 3.79
2425 2545 0.417841 AGAGGGGGTAAGAGGAAGCA 59.582 55.000 0.00 0.00 0.00 3.91
2426 2546 1.585895 AAGAGGGGGTAAGAGGAAGC 58.414 55.000 0.00 0.00 0.00 3.86
2427 2547 4.659529 AAAAAGAGGGGGTAAGAGGAAG 57.340 45.455 0.00 0.00 0.00 3.46
2428 2548 4.915194 TGTAAAAAGAGGGGGTAAGAGGAA 59.085 41.667 0.00 0.00 0.00 3.36
2429 2549 4.505367 TGTAAAAAGAGGGGGTAAGAGGA 58.495 43.478 0.00 0.00 0.00 3.71
2430 2550 4.921644 TGTAAAAAGAGGGGGTAAGAGG 57.078 45.455 0.00 0.00 0.00 3.69
2431 2551 5.648092 CACATGTAAAAAGAGGGGGTAAGAG 59.352 44.000 0.00 0.00 0.00 2.85
2432 2552 5.311121 TCACATGTAAAAAGAGGGGGTAAGA 59.689 40.000 0.00 0.00 0.00 2.10
2433 2553 5.566469 TCACATGTAAAAAGAGGGGGTAAG 58.434 41.667 0.00 0.00 0.00 2.34
2434 2554 5.515886 CCTCACATGTAAAAAGAGGGGGTAA 60.516 44.000 17.52 0.00 41.65 2.85
2435 2555 4.018779 CCTCACATGTAAAAAGAGGGGGTA 60.019 45.833 17.52 0.00 41.65 3.69
2436 2556 3.245264 CCTCACATGTAAAAAGAGGGGGT 60.245 47.826 17.52 0.00 41.65 4.95
2437 2557 3.356290 CCTCACATGTAAAAAGAGGGGG 58.644 50.000 17.52 1.25 41.65 5.40
2479 2599 9.331282 GCTGTTAATCTCATTAATTAGTGGTCT 57.669 33.333 7.99 0.00 37.11 3.85
2480 2600 9.331282 AGCTGTTAATCTCATTAATTAGTGGTC 57.669 33.333 7.99 0.00 37.11 4.02
2481 2601 9.331282 GAGCTGTTAATCTCATTAATTAGTGGT 57.669 33.333 7.99 0.00 37.11 4.16
2482 2602 9.330063 TGAGCTGTTAATCTCATTAATTAGTGG 57.670 33.333 7.99 0.34 37.11 4.00
2518 2638 9.475620 TCTTTTCACATGAGAGGTAAGAGTATA 57.524 33.333 0.00 0.00 0.00 1.47
2519 2639 8.367660 TCTTTTCACATGAGAGGTAAGAGTAT 57.632 34.615 0.00 0.00 0.00 2.12
2520 2640 7.776618 TCTTTTCACATGAGAGGTAAGAGTA 57.223 36.000 0.00 0.00 0.00 2.59
2521 2641 6.672266 TCTTTTCACATGAGAGGTAAGAGT 57.328 37.500 0.00 0.00 0.00 3.24
2529 2649 2.307098 ACCCCCTCTTTTCACATGAGAG 59.693 50.000 0.00 0.00 37.30 3.20
2530 2650 2.348472 ACCCCCTCTTTTCACATGAGA 58.652 47.619 0.00 0.00 0.00 3.27
2531 2651 2.887151 ACCCCCTCTTTTCACATGAG 57.113 50.000 0.00 0.00 0.00 2.90
2532 2652 3.913799 TCTTACCCCCTCTTTTCACATGA 59.086 43.478 0.00 0.00 0.00 3.07
2533 2653 4.265073 CTCTTACCCCCTCTTTTCACATG 58.735 47.826 0.00 0.00 0.00 3.21
2534 2654 3.267031 CCTCTTACCCCCTCTTTTCACAT 59.733 47.826 0.00 0.00 0.00 3.21
2535 2655 2.642807 CCTCTTACCCCCTCTTTTCACA 59.357 50.000 0.00 0.00 0.00 3.58
2536 2656 2.026169 CCCTCTTACCCCCTCTTTTCAC 60.026 54.545 0.00 0.00 0.00 3.18
2537 2657 2.157911 TCCCTCTTACCCCCTCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
2538 2658 2.506231 CTCCCTCTTACCCCCTCTTTTC 59.494 54.545 0.00 0.00 0.00 2.29
2539 2659 2.563406 CTCCCTCTTACCCCCTCTTTT 58.437 52.381 0.00 0.00 0.00 2.27
2540 2660 1.906692 GCTCCCTCTTACCCCCTCTTT 60.907 57.143 0.00 0.00 0.00 2.52
2541 2661 0.326713 GCTCCCTCTTACCCCCTCTT 60.327 60.000 0.00 0.00 0.00 2.85
2542 2662 1.315216 GCTCCCTCTTACCCCCTCT 59.685 63.158 0.00 0.00 0.00 3.69
2543 2663 0.400670 ATGCTCCCTCTTACCCCCTC 60.401 60.000 0.00 0.00 0.00 4.30
2544 2664 0.695803 CATGCTCCCTCTTACCCCCT 60.696 60.000 0.00 0.00 0.00 4.79
2545 2665 0.988678 ACATGCTCCCTCTTACCCCC 60.989 60.000 0.00 0.00 0.00 5.40
2546 2666 0.919710 AACATGCTCCCTCTTACCCC 59.080 55.000 0.00 0.00 0.00 4.95
2547 2667 3.926058 TTAACATGCTCCCTCTTACCC 57.074 47.619 0.00 0.00 0.00 3.69
2548 2668 5.123979 CAGTTTTAACATGCTCCCTCTTACC 59.876 44.000 0.00 0.00 0.00 2.85
2549 2669 5.392057 GCAGTTTTAACATGCTCCCTCTTAC 60.392 44.000 0.00 0.00 37.00 2.34
2550 2670 4.700213 GCAGTTTTAACATGCTCCCTCTTA 59.300 41.667 0.00 0.00 37.00 2.10
2551 2671 3.507622 GCAGTTTTAACATGCTCCCTCTT 59.492 43.478 0.00 0.00 37.00 2.85
2552 2672 3.084786 GCAGTTTTAACATGCTCCCTCT 58.915 45.455 0.00 0.00 37.00 3.69
2553 2673 3.494045 GCAGTTTTAACATGCTCCCTC 57.506 47.619 0.00 0.00 37.00 4.30
2559 2679 6.668541 TGATAGAGAGCAGTTTTAACATGC 57.331 37.500 0.00 8.18 40.29 4.06
2560 2680 9.552114 CTTTTGATAGAGAGCAGTTTTAACATG 57.448 33.333 0.00 0.00 0.00 3.21
2561 2681 8.734386 CCTTTTGATAGAGAGCAGTTTTAACAT 58.266 33.333 0.00 0.00 0.00 2.71
2562 2682 7.936847 TCCTTTTGATAGAGAGCAGTTTTAACA 59.063 33.333 0.00 0.00 0.00 2.41
2563 2683 8.324163 TCCTTTTGATAGAGAGCAGTTTTAAC 57.676 34.615 0.00 0.00 0.00 2.01
2564 2684 8.375506 TCTCCTTTTGATAGAGAGCAGTTTTAA 58.624 33.333 0.00 0.00 32.92 1.52
2565 2685 7.907389 TCTCCTTTTGATAGAGAGCAGTTTTA 58.093 34.615 0.00 0.00 32.92 1.52
2566 2686 6.773638 TCTCCTTTTGATAGAGAGCAGTTTT 58.226 36.000 0.00 0.00 32.92 2.43
2567 2687 6.365970 TCTCCTTTTGATAGAGAGCAGTTT 57.634 37.500 0.00 0.00 32.92 2.66
2568 2688 6.558488 ATCTCCTTTTGATAGAGAGCAGTT 57.442 37.500 0.00 0.00 39.86 3.16
2569 2689 6.383726 AGAATCTCCTTTTGATAGAGAGCAGT 59.616 38.462 0.00 0.00 39.86 4.40
2570 2690 6.819284 AGAATCTCCTTTTGATAGAGAGCAG 58.181 40.000 0.00 0.00 39.86 4.24
2571 2691 6.805016 AGAATCTCCTTTTGATAGAGAGCA 57.195 37.500 0.00 0.00 39.86 4.26
2572 2692 7.768120 TGAAAGAATCTCCTTTTGATAGAGAGC 59.232 37.037 0.00 0.00 39.86 4.09
2573 2693 9.097257 GTGAAAGAATCTCCTTTTGATAGAGAG 57.903 37.037 0.00 0.00 39.86 3.20
2574 2694 8.597167 TGTGAAAGAATCTCCTTTTGATAGAGA 58.403 33.333 0.00 0.00 40.73 3.10
2575 2695 8.783833 TGTGAAAGAATCTCCTTTTGATAGAG 57.216 34.615 0.00 0.00 36.58 2.43
2576 2696 7.335422 GCTGTGAAAGAATCTCCTTTTGATAGA 59.665 37.037 0.00 0.00 36.58 1.98
2609 2729 2.078392 GGCATGTGGAAAATTTGCTGG 58.922 47.619 0.00 0.00 33.86 4.85
2611 2731 2.901839 AGAGGCATGTGGAAAATTTGCT 59.098 40.909 0.00 0.00 33.86 3.91
2612 2732 3.323751 AGAGGCATGTGGAAAATTTGC 57.676 42.857 0.00 0.00 0.00 3.68
2613 2733 7.656948 TCTTTAAAGAGGCATGTGGAAAATTTG 59.343 33.333 13.99 0.00 0.00 2.32
2614 2734 7.734942 TCTTTAAAGAGGCATGTGGAAAATTT 58.265 30.769 13.99 0.00 0.00 1.82
2635 2756 5.582953 TCCACATGATTTCAGGGAATCTTT 58.417 37.500 0.00 0.00 37.04 2.52
2651 2772 4.074259 TGGATCAGTCAAACTTCCACATG 58.926 43.478 0.00 0.00 31.91 3.21
2746 2867 0.032815 GCGGCCACTTCTATCCTCTC 59.967 60.000 2.24 0.00 0.00 3.20
2747 2868 0.687757 TGCGGCCACTTCTATCCTCT 60.688 55.000 2.24 0.00 0.00 3.69
2931 3059 3.054878 CGTAGGTAACAGTGTTGTGGTC 58.945 50.000 18.90 5.67 37.67 4.02
2951 3079 4.363999 CAGTTAGCCTCTTAATCACTCCG 58.636 47.826 0.00 0.00 0.00 4.63
2952 3080 4.406003 TCCAGTTAGCCTCTTAATCACTCC 59.594 45.833 0.00 0.00 0.00 3.85
2953 3081 5.128008 AGTCCAGTTAGCCTCTTAATCACTC 59.872 44.000 0.00 0.00 0.00 3.51
2955 3083 5.105310 TCAGTCCAGTTAGCCTCTTAATCAC 60.105 44.000 0.00 0.00 0.00 3.06
2956 3084 5.023452 TCAGTCCAGTTAGCCTCTTAATCA 58.977 41.667 0.00 0.00 0.00 2.57
2957 3085 5.599999 TCAGTCCAGTTAGCCTCTTAATC 57.400 43.478 0.00 0.00 0.00 1.75
2958 3086 5.071115 GGATCAGTCCAGTTAGCCTCTTAAT 59.929 44.000 0.00 0.00 44.42 1.40
2959 3087 4.406003 GGATCAGTCCAGTTAGCCTCTTAA 59.594 45.833 0.00 0.00 44.42 1.85
2960 3088 3.961408 GGATCAGTCCAGTTAGCCTCTTA 59.039 47.826 0.00 0.00 44.42 2.10
2961 3089 2.769095 GGATCAGTCCAGTTAGCCTCTT 59.231 50.000 0.00 0.00 44.42 2.85
2962 3090 2.393646 GGATCAGTCCAGTTAGCCTCT 58.606 52.381 0.00 0.00 44.42 3.69
2963 3091 2.900716 GGATCAGTCCAGTTAGCCTC 57.099 55.000 0.00 0.00 44.42 4.70
2973 3101 5.991933 TTCAGATAGCTATGGATCAGTCC 57.008 43.478 11.94 0.00 45.31 3.85
2974 3102 9.531942 CAATATTCAGATAGCTATGGATCAGTC 57.468 37.037 11.94 0.00 0.00 3.51
2975 3103 7.986320 GCAATATTCAGATAGCTATGGATCAGT 59.014 37.037 11.94 0.00 0.00 3.41
2976 3104 7.985752 TGCAATATTCAGATAGCTATGGATCAG 59.014 37.037 11.94 0.00 0.00 2.90
2977 3105 7.854337 TGCAATATTCAGATAGCTATGGATCA 58.146 34.615 11.94 0.53 0.00 2.92
2978 3106 8.905660 ATGCAATATTCAGATAGCTATGGATC 57.094 34.615 11.94 0.00 0.00 3.36
2979 3107 7.937942 GGATGCAATATTCAGATAGCTATGGAT 59.062 37.037 11.94 1.90 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.