Multiple sequence alignment - TraesCS7B01G380600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G380600 chr7B 100.000 2776 0 0 1 2776 645393756 645390981 0.000000e+00 5127
1 TraesCS7B01G380600 chr7D 90.442 1946 102 49 1 1926 579758122 579756241 0.000000e+00 2486
2 TraesCS7B01G380600 chr7D 84.420 276 32 4 2484 2749 579755813 579755539 7.630000e-66 261
3 TraesCS7B01G380600 chr7A 86.617 949 66 26 1099 1995 671420580 671419641 0.000000e+00 992
4 TraesCS7B01G380600 chr7A 82.068 474 68 13 191 657 671421726 671421263 3.350000e-104 388
5 TraesCS7B01G380600 chr7A 88.776 294 27 5 2484 2774 671419213 671418923 3.400000e-94 355
6 TraesCS7B01G380600 chr7A 86.058 208 26 3 2259 2465 671419501 671419296 1.290000e-53 220
7 TraesCS7B01G380600 chr4D 96.471 170 6 0 1983 2152 13359911 13360080 5.850000e-72 281
8 TraesCS7B01G380600 chr4D 96.429 168 6 0 1986 2153 238640331 238640164 7.570000e-71 278
9 TraesCS7B01G380600 chr4D 93.407 182 10 2 1985 2165 6588426 6588606 4.560000e-68 268
10 TraesCS7B01G380600 chr4D 94.253 174 9 1 1979 2152 93338034 93338206 5.900000e-67 265
11 TraesCS7B01G380600 chr1B 96.429 168 6 0 1993 2160 62447398 62447231 7.570000e-71 278
12 TraesCS7B01G380600 chr3B 95.349 172 8 0 1982 2153 571752519 571752690 9.800000e-70 274
13 TraesCS7B01G380600 chr1D 94.857 175 8 1 1980 2154 238940387 238940214 3.520000e-69 272
14 TraesCS7B01G380600 chr3A 95.808 167 5 2 1994 2159 362899839 362899674 4.560000e-68 268
15 TraesCS7B01G380600 chr2D 94.286 175 10 0 1978 2152 309971593 309971419 4.560000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G380600 chr7B 645390981 645393756 2775 True 5127.00 5127 100.00000 1 2776 1 chr7B.!!$R1 2775
1 TraesCS7B01G380600 chr7D 579755539 579758122 2583 True 1373.50 2486 87.43100 1 2749 2 chr7D.!!$R1 2748
2 TraesCS7B01G380600 chr7A 671418923 671421726 2803 True 488.75 992 85.87975 191 2774 4 chr7A.!!$R1 2583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 935 0.39206 GGGGAGCCGACACGTATTTT 60.392 55.0 0.0 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 2870 0.179134 CTTGACCCCGACACGATCTC 60.179 60.0 0.0 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.600449 TCTTTTTGCAAGAAAAGAAAGAACAA 57.400 26.923 19.29 0.64 46.80 2.83
204 205 9.981114 AAAGAAATACATTTTTACACTCCAAGG 57.019 29.630 0.00 0.00 0.00 3.61
236 237 8.761575 AATTAACTACCTCAAAAACATGCATG 57.238 30.769 25.09 25.09 0.00 4.06
325 330 4.041567 TCTGCTGTCCATTTCTCCTGTAAA 59.958 41.667 0.00 0.00 0.00 2.01
344 349 5.530915 TGTAAACTTCCACCATCTTCACAAG 59.469 40.000 0.00 0.00 0.00 3.16
349 354 4.371624 TCCACCATCTTCACAAGTGATT 57.628 40.909 3.43 0.00 39.64 2.57
370 375 6.382859 TGATTTCTGCATCCCTAACTGTAGTA 59.617 38.462 0.00 0.00 0.00 1.82
371 376 5.854010 TTCTGCATCCCTAACTGTAGTAG 57.146 43.478 0.00 0.00 0.00 2.57
372 377 4.868268 TCTGCATCCCTAACTGTAGTAGT 58.132 43.478 0.00 0.00 42.89 2.73
373 378 6.009908 TCTGCATCCCTAACTGTAGTAGTA 57.990 41.667 0.00 0.00 39.18 1.82
444 449 4.556697 AGGGGTTCAACTTGAAGGAAAAT 58.443 39.130 4.36 0.00 37.00 1.82
445 450 5.711698 AGGGGTTCAACTTGAAGGAAAATA 58.288 37.500 4.36 0.00 37.00 1.40
509 515 0.461870 GCCGCCATGATGTCACTGTA 60.462 55.000 0.00 0.00 0.00 2.74
535 541 4.281688 TCCATTTCCTTCTTTTCTGCAAGG 59.718 41.667 0.00 0.00 38.49 3.61
555 561 4.517285 AGGAAAGAAAGAATAGATGCGCA 58.483 39.130 14.96 14.96 0.00 6.09
587 593 9.860898 ACTAATAAATTGCTTTGATTCCTTCAC 57.139 29.630 0.00 0.00 32.84 3.18
595 601 6.913170 TGCTTTGATTCCTTCACTGAATTAC 58.087 36.000 0.00 0.00 32.74 1.89
596 602 6.071952 TGCTTTGATTCCTTCACTGAATTACC 60.072 38.462 0.00 0.00 32.74 2.85
627 636 2.649034 GAGCCGTCTTCGTCACCA 59.351 61.111 0.00 0.00 35.01 4.17
649 658 5.537674 CCAATCATGCTCCTAAATTAGGCTT 59.462 40.000 14.05 0.00 45.82 4.35
677 686 4.522405 TGCTACTGCATTAGCTTTTTCCAA 59.478 37.500 29.35 10.15 45.31 3.53
806 815 5.936054 ACTGTAACTGTGTAACGCTAGTAG 58.064 41.667 0.00 0.00 42.39 2.57
868 877 2.158449 CGTCATCTGACTGAAAAGCACC 59.842 50.000 8.57 0.00 42.66 5.01
891 904 0.692476 CCCACCCAGTGACATTCAGA 59.308 55.000 0.00 0.00 35.23 3.27
918 931 3.376078 GTGGGGAGCCGACACGTA 61.376 66.667 0.00 0.00 32.42 3.57
922 935 0.392060 GGGGAGCCGACACGTATTTT 60.392 55.000 0.00 0.00 0.00 1.82
941 954 4.751767 TTTTTGCAGGTTCCAATTCTGT 57.248 36.364 0.00 0.00 0.00 3.41
942 955 5.860941 TTTTTGCAGGTTCCAATTCTGTA 57.139 34.783 0.00 0.00 0.00 2.74
943 956 4.846779 TTTGCAGGTTCCAATTCTGTAC 57.153 40.909 0.00 0.00 0.00 2.90
944 957 3.500448 TGCAGGTTCCAATTCTGTACA 57.500 42.857 0.00 0.00 0.00 2.90
945 958 3.411446 TGCAGGTTCCAATTCTGTACAG 58.589 45.455 17.17 17.17 0.00 2.74
946 959 2.162408 GCAGGTTCCAATTCTGTACAGC 59.838 50.000 18.45 1.19 0.00 4.40
953 966 4.256110 TCCAATTCTGTACAGCATGACAG 58.744 43.478 18.45 0.79 42.01 3.51
960 973 2.302733 TGTACAGCATGACAGTCACCAT 59.697 45.455 5.05 0.00 39.69 3.55
984 997 6.233434 TGCTGATTGTCAGTCTATTTTGAGT 58.767 36.000 8.58 0.00 45.94 3.41
985 998 6.148315 TGCTGATTGTCAGTCTATTTTGAGTG 59.852 38.462 8.58 0.00 45.94 3.51
1012 1040 7.727578 TCACAGTAAGTCATGGTAGGATTTA 57.272 36.000 0.00 0.00 0.00 1.40
1018 1046 8.258708 AGTAAGTCATGGTAGGATTTAGTTGTC 58.741 37.037 0.00 0.00 0.00 3.18
1021 1049 7.106239 AGTCATGGTAGGATTTAGTTGTCAAG 58.894 38.462 0.00 0.00 0.00 3.02
1022 1050 7.038302 AGTCATGGTAGGATTTAGTTGTCAAGA 60.038 37.037 0.00 0.00 0.00 3.02
1023 1051 7.606456 GTCATGGTAGGATTTAGTTGTCAAGAA 59.394 37.037 0.00 0.00 0.00 2.52
1024 1052 8.160765 TCATGGTAGGATTTAGTTGTCAAGAAA 58.839 33.333 0.00 0.00 0.00 2.52
1025 1053 8.792633 CATGGTAGGATTTAGTTGTCAAGAAAA 58.207 33.333 0.00 0.00 0.00 2.29
1026 1054 8.391075 TGGTAGGATTTAGTTGTCAAGAAAAG 57.609 34.615 0.00 0.00 0.00 2.27
1027 1055 8.215050 TGGTAGGATTTAGTTGTCAAGAAAAGA 58.785 33.333 0.00 0.00 0.00 2.52
1028 1056 9.063615 GGTAGGATTTAGTTGTCAAGAAAAGAA 57.936 33.333 0.00 0.00 0.00 2.52
1031 1059 8.841300 AGGATTTAGTTGTCAAGAAAAGAAGTC 58.159 33.333 0.00 0.00 0.00 3.01
1032 1060 8.621286 GGATTTAGTTGTCAAGAAAAGAAGTCA 58.379 33.333 0.00 0.00 0.00 3.41
1034 1062 9.956720 ATTTAGTTGTCAAGAAAAGAAGTCATG 57.043 29.630 0.00 0.00 0.00 3.07
1035 1063 6.382869 AGTTGTCAAGAAAAGAAGTCATGG 57.617 37.500 0.00 0.00 0.00 3.66
1036 1064 5.888161 AGTTGTCAAGAAAAGAAGTCATGGT 59.112 36.000 0.00 0.00 0.00 3.55
1038 1066 7.227512 AGTTGTCAAGAAAAGAAGTCATGGTAG 59.772 37.037 0.00 0.00 0.00 3.18
1039 1067 5.997746 TGTCAAGAAAAGAAGTCATGGTAGG 59.002 40.000 0.00 0.00 0.00 3.18
1040 1068 6.183361 TGTCAAGAAAAGAAGTCATGGTAGGA 60.183 38.462 0.00 0.00 0.00 2.94
1041 1069 6.881602 GTCAAGAAAAGAAGTCATGGTAGGAT 59.118 38.462 0.00 0.00 0.00 3.24
1045 1377 6.595716 AGAAAAGAAGTCATGGTAGGATTTCG 59.404 38.462 0.00 0.00 36.47 3.46
1051 1383 5.416947 AGTCATGGTAGGATTTCGTTACAC 58.583 41.667 0.00 0.00 0.00 2.90
1076 1412 2.805671 TGCAAATACACTGACACGAAGG 59.194 45.455 0.00 0.00 0.00 3.46
1083 1419 1.860950 CACTGACACGAAGGTTCTGTG 59.139 52.381 10.92 10.92 37.56 3.66
1094 1430 3.170991 AGGTTCTGTGCTGACTAGGTA 57.829 47.619 0.00 0.00 0.00 3.08
1096 1432 2.826725 GGTTCTGTGCTGACTAGGTACT 59.173 50.000 0.00 0.00 46.37 2.73
1097 1433 3.367498 GGTTCTGTGCTGACTAGGTACTG 60.367 52.174 0.00 0.00 41.52 2.74
1130 1480 2.589159 GGAGGATTTCGCCGAGCC 60.589 66.667 0.00 0.00 0.00 4.70
1154 1504 1.448540 GGACATGGTCAGGAGCACG 60.449 63.158 2.94 0.00 42.02 5.34
1200 1553 4.175516 GTGTCATCTCTTGCTCTCTTCTG 58.824 47.826 0.00 0.00 0.00 3.02
1222 1578 0.320771 TTTCTTCTCGCTGGCCTGAC 60.321 55.000 14.77 3.95 0.00 3.51
1223 1579 1.188219 TTCTTCTCGCTGGCCTGACT 61.188 55.000 14.77 0.00 0.00 3.41
1257 1630 4.082190 CGATCCTCGGCAATCCTAGATTTA 60.082 45.833 0.00 0.00 36.00 1.40
1347 1720 4.111016 CGGCGCTGGACTACGACA 62.111 66.667 8.83 0.00 37.05 4.35
1780 2174 0.930310 CTGAACGCCGTGTGATATGG 59.070 55.000 0.00 0.00 38.58 2.74
1791 2185 4.112634 CGTGTGATATGGTCGATCAGTTT 58.887 43.478 3.97 0.00 34.02 2.66
1863 2257 0.981183 TTGTATGTCAGGTTCCGGCT 59.019 50.000 0.00 0.00 0.00 5.52
1891 2291 1.526464 GTTTGATGGTTTGCTTTGCCG 59.474 47.619 0.00 0.00 0.00 5.69
1949 2440 9.988350 AACGATCATCATGAGTTTTAACATTAC 57.012 29.630 0.09 0.00 0.00 1.89
2012 2503 9.862149 ATATTTCCTCCGTTCCTAAATATTTGT 57.138 29.630 11.05 0.00 31.80 2.83
2013 2504 7.619964 TTTCCTCCGTTCCTAAATATTTGTC 57.380 36.000 11.05 0.00 0.00 3.18
2014 2505 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
2015 2506 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
2016 2507 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
2017 2508 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
2018 2509 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2019 2510 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2020 2511 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2021 2512 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2034 2525 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2035 2526 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2036 2527 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2037 2528 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2038 2529 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2039 2530 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2040 2531 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2041 2532 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2042 2533 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2044 2535 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2045 2536 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2046 2537 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2047 2538 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2048 2539 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2049 2540 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2050 2541 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2051 2542 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
2052 2543 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
2053 2544 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
2054 2545 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
2055 2546 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
2056 2547 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
2057 2548 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
2058 2549 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
2059 2550 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
2060 2551 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2061 2552 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2062 2553 5.931532 ACATACGAAGCAAAATGAGTGAAG 58.068 37.500 0.00 0.00 0.00 3.02
2063 2554 3.273919 ACGAAGCAAAATGAGTGAAGC 57.726 42.857 0.00 0.00 0.00 3.86
2064 2555 2.880890 ACGAAGCAAAATGAGTGAAGCT 59.119 40.909 0.00 0.00 0.00 3.74
2065 2556 4.065088 ACGAAGCAAAATGAGTGAAGCTA 58.935 39.130 0.00 0.00 0.00 3.32
2066 2557 4.083802 ACGAAGCAAAATGAGTGAAGCTAC 60.084 41.667 0.00 0.00 0.00 3.58
2067 2558 4.083855 CGAAGCAAAATGAGTGAAGCTACA 60.084 41.667 0.00 0.00 0.00 2.74
2068 2559 4.756084 AGCAAAATGAGTGAAGCTACAC 57.244 40.909 0.00 0.00 40.60 2.90
2080 2571 7.469537 AGTGAAGCTACACTCTAAAGTATGT 57.530 36.000 0.00 0.00 46.36 2.29
2081 2572 7.540299 AGTGAAGCTACACTCTAAAGTATGTC 58.460 38.462 0.00 0.00 46.36 3.06
2082 2573 7.394923 AGTGAAGCTACACTCTAAAGTATGTCT 59.605 37.037 0.00 0.00 46.36 3.41
2083 2574 8.675504 GTGAAGCTACACTCTAAAGTATGTCTA 58.324 37.037 0.00 0.00 37.73 2.59
2084 2575 9.409918 TGAAGCTACACTCTAAAGTATGTCTAT 57.590 33.333 0.00 0.00 33.25 1.98
2104 2595 9.990868 TGTCTATATACATCCATATGTGGTAGT 57.009 33.333 8.51 10.44 45.99 2.73
2111 2602 7.572523 ACATCCATATGTGGTAGTTCATTTG 57.427 36.000 8.51 0.00 44.79 2.32
2112 2603 7.345691 ACATCCATATGTGGTAGTTCATTTGA 58.654 34.615 8.51 0.00 44.79 2.69
2113 2604 7.833682 ACATCCATATGTGGTAGTTCATTTGAA 59.166 33.333 8.51 0.00 44.79 2.69
2114 2605 8.685427 CATCCATATGTGGTAGTTCATTTGAAA 58.315 33.333 8.51 0.00 46.16 2.69
2115 2606 8.821686 TCCATATGTGGTAGTTCATTTGAAAT 57.178 30.769 8.51 0.00 46.16 2.17
2116 2607 9.913310 TCCATATGTGGTAGTTCATTTGAAATA 57.087 29.630 8.51 0.00 46.16 1.40
2146 2637 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2147 2638 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2148 2639 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2149 2640 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2150 2641 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2170 2661 5.237344 GGAGTATTTGCTATTCATCGCTTGT 59.763 40.000 0.00 0.00 0.00 3.16
2177 2668 4.091424 GCTATTCATCGCTTGTGTGAAAC 58.909 43.478 0.00 0.00 35.70 2.78
2181 2672 2.146342 CATCGCTTGTGTGAAACTCCT 58.854 47.619 0.00 0.00 38.04 3.69
2185 2676 3.258372 TCGCTTGTGTGAAACTCCTATCT 59.742 43.478 0.00 0.00 38.04 1.98
2190 2681 3.324846 TGTGTGAAACTCCTATCTGCACT 59.675 43.478 0.00 0.00 38.04 4.40
2192 2683 3.265791 GTGAAACTCCTATCTGCACTGG 58.734 50.000 0.00 0.00 0.00 4.00
2205 2696 1.523154 GCACTGGTCGATTTTGGGCA 61.523 55.000 0.00 0.00 0.00 5.36
2229 2720 2.919856 CGAGGCCGAGATGGGGAT 60.920 66.667 0.00 0.00 38.63 3.85
2253 2776 0.541863 GCTAGGCCTAACCAAGAGCA 59.458 55.000 14.85 0.00 43.14 4.26
2257 2780 1.425448 AGGCCTAACCAAGAGCAACTT 59.575 47.619 1.29 0.00 43.14 2.66
2319 2849 1.454295 GTTGACGGGGTTTGGGTGT 60.454 57.895 0.00 0.00 0.00 4.16
2332 2862 2.363925 GGTGTAGGGGAGGTCGCT 60.364 66.667 0.00 0.00 41.77 4.93
2340 2870 4.436998 GGAGGTCGCTGGTGACGG 62.437 72.222 7.98 0.00 39.83 4.79
2345 2875 3.197614 TCGCTGGTGACGGAGATC 58.802 61.111 0.00 0.00 40.89 2.75
2356 2886 2.806237 GGAGATCGTGTCGGGGTC 59.194 66.667 0.00 0.00 0.00 4.46
2357 2887 2.050350 GGAGATCGTGTCGGGGTCA 61.050 63.158 0.00 0.00 0.00 4.02
2367 2897 3.330720 CGGGGTCAAGAGGGGCTT 61.331 66.667 0.00 0.00 37.29 4.35
2397 2927 1.595929 GCAACACGACGGAAAGGGA 60.596 57.895 0.00 0.00 0.00 4.20
2430 2960 4.332637 GCACAGCAACGCCACTGG 62.333 66.667 4.46 0.00 38.25 4.00
2442 2972 2.280797 CACTGGTCGTGGGTGGTG 60.281 66.667 0.00 0.00 40.02 4.17
2443 2973 4.250305 ACTGGTCGTGGGTGGTGC 62.250 66.667 0.00 0.00 0.00 5.01
2447 2977 4.612412 GTCGTGGGTGGTGCGGAA 62.612 66.667 0.00 0.00 0.00 4.30
2449 2979 4.308458 CGTGGGTGGTGCGGAAGA 62.308 66.667 0.00 0.00 0.00 2.87
2455 3000 4.649705 TGGTGCGGAAGAGGGGGA 62.650 66.667 0.00 0.00 0.00 4.81
2588 3190 3.211045 TGTCAACAAGTAACAAGCCCTC 58.789 45.455 0.00 0.00 0.00 4.30
2632 3234 3.467226 CCTCCGGTGGCCATACGT 61.467 66.667 24.95 0.00 0.00 3.57
2656 3267 2.760385 GAGGTGCTAGTCCCCGCT 60.760 66.667 0.00 0.00 0.00 5.52
2657 3268 3.077556 AGGTGCTAGTCCCCGCTG 61.078 66.667 0.00 0.00 0.00 5.18
2660 3271 2.606519 TGCTAGTCCCCGCTGGTT 60.607 61.111 0.00 0.00 34.77 3.67
2676 3287 3.008485 GCTGGTTGGGAGGAATCCTATAG 59.992 52.174 0.00 0.00 31.76 1.31
2703 3315 7.747690 TCCTTATGTAGTTTTAGTGGTTTGGA 58.252 34.615 0.00 0.00 0.00 3.53
2708 3320 1.001048 GTTTTAGTGGTTTGGACGGGC 60.001 52.381 0.00 0.00 0.00 6.13
2734 3346 3.186047 CGGCCGCAACGTTAGAGG 61.186 66.667 14.67 8.24 0.00 3.69
2738 3350 1.908066 GCCGCAACGTTAGAGGGTTG 61.908 60.000 17.26 0.00 44.80 3.77
2760 3372 6.252599 TGCAATAATGTCCTCCTTGTCTAT 57.747 37.500 0.00 0.00 0.00 1.98
2765 3377 2.752030 TGTCCTCCTTGTCTATCCCTG 58.248 52.381 0.00 0.00 0.00 4.45
2769 3381 2.103941 CCTCCTTGTCTATCCCTGCTTC 59.896 54.545 0.00 0.00 0.00 3.86
2772 3384 0.830648 TTGTCTATCCCTGCTTCGGG 59.169 55.000 0.44 0.44 46.13 5.14
2773 3385 1.069935 GTCTATCCCTGCTTCGGGC 59.930 63.158 1.90 0.00 44.30 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.452108 GGTTCGCTAGGCAGGCATT 60.452 57.895 0.00 0.00 0.00 3.56
189 190 7.716799 ATTATCATGCCTTGGAGTGTAAAAA 57.283 32.000 0.00 0.00 0.00 1.94
202 203 9.474313 TTTTTGAGGTAGTTAATTATCATGCCT 57.526 29.630 2.66 2.66 0.00 4.75
232 233 5.786401 AAGAGAATTACACTCGAACATGC 57.214 39.130 0.00 0.00 39.12 4.06
233 234 7.796838 TCAAAAGAGAATTACACTCGAACATG 58.203 34.615 0.00 0.00 39.12 3.21
234 235 7.962964 TCAAAAGAGAATTACACTCGAACAT 57.037 32.000 0.00 0.00 39.12 2.71
236 237 9.319223 GAAATCAAAAGAGAATTACACTCGAAC 57.681 33.333 0.00 0.00 39.12 3.95
325 330 3.136443 TCACTTGTGAAGATGGTGGAAGT 59.864 43.478 0.44 0.00 0.00 3.01
344 349 4.265073 ACAGTTAGGGATGCAGAAATCAC 58.735 43.478 0.00 0.00 0.00 3.06
349 354 5.269991 ACTACTACAGTTAGGGATGCAGAA 58.730 41.667 0.00 0.00 31.59 3.02
370 375 3.485216 GCACGCGCAAAATGATACTTACT 60.485 43.478 5.73 0.00 38.36 2.24
371 376 2.776225 GCACGCGCAAAATGATACTTAC 59.224 45.455 5.73 0.00 38.36 2.34
372 377 2.535931 CGCACGCGCAAAATGATACTTA 60.536 45.455 5.73 0.00 38.40 2.24
373 378 1.790123 CGCACGCGCAAAATGATACTT 60.790 47.619 5.73 0.00 38.40 2.24
444 449 2.231964 GTGACCGACACAACTATGGGTA 59.768 50.000 7.60 0.00 45.31 3.69
509 515 4.895297 TGCAGAAAAGAAGGAAATGGACTT 59.105 37.500 0.00 0.00 0.00 3.01
528 534 6.264088 GCATCTATTCTTTCTTTCCTTGCAG 58.736 40.000 0.00 0.00 0.00 4.41
535 541 5.172771 GCAATGCGCATCTATTCTTTCTTTC 59.827 40.000 25.53 0.00 41.79 2.62
569 575 6.600882 ATTCAGTGAAGGAATCAAAGCAAT 57.399 33.333 11.91 0.00 40.50 3.56
587 593 3.930848 GGTTAGTGGTCGTGGTAATTCAG 59.069 47.826 0.00 0.00 0.00 3.02
595 601 1.445582 GCTCGGTTAGTGGTCGTGG 60.446 63.158 0.00 0.00 0.00 4.94
596 602 1.445582 GGCTCGGTTAGTGGTCGTG 60.446 63.158 0.00 0.00 0.00 4.35
677 686 9.180678 CAAGAACGTTACTTCATATTTGCTTTT 57.819 29.630 0.00 0.00 0.00 2.27
806 815 3.998341 TCCAATCCGTAAAAGTGTAGCAC 59.002 43.478 0.00 0.00 34.10 4.40
848 857 2.158449 CGGTGCTTTTCAGTCAGATGAC 59.842 50.000 4.77 4.77 45.08 3.06
857 866 3.373565 GGGCCCGGTGCTTTTCAG 61.374 66.667 5.69 0.00 40.92 3.02
884 897 0.742281 CACTCGCCACCCTCTGAATG 60.742 60.000 0.00 0.00 0.00 2.67
922 935 4.211125 TGTACAGAATTGGAACCTGCAAA 58.789 39.130 0.00 0.00 29.75 3.68
930 943 4.650734 TGTCATGCTGTACAGAATTGGAA 58.349 39.130 27.08 4.25 0.00 3.53
931 944 4.256110 CTGTCATGCTGTACAGAATTGGA 58.744 43.478 27.08 12.98 44.79 3.53
932 945 4.005650 ACTGTCATGCTGTACAGAATTGG 58.994 43.478 27.08 10.75 44.79 3.16
934 947 4.692625 GTGACTGTCATGCTGTACAGAATT 59.307 41.667 27.08 5.84 44.79 2.17
935 948 4.248859 GTGACTGTCATGCTGTACAGAAT 58.751 43.478 27.08 19.31 44.79 2.40
936 949 3.554960 GGTGACTGTCATGCTGTACAGAA 60.555 47.826 27.08 17.61 44.79 3.02
937 950 2.029020 GGTGACTGTCATGCTGTACAGA 60.029 50.000 27.08 11.86 44.79 3.41
938 951 2.289010 TGGTGACTGTCATGCTGTACAG 60.289 50.000 18.93 18.93 46.84 2.74
940 953 2.455674 TGGTGACTGTCATGCTGTAC 57.544 50.000 14.37 0.00 0.00 2.90
941 954 2.976589 CATGGTGACTGTCATGCTGTA 58.023 47.619 14.37 0.00 35.07 2.74
942 955 1.817357 CATGGTGACTGTCATGCTGT 58.183 50.000 14.37 0.00 35.07 4.40
946 959 2.103537 TCAGCATGGTGACTGTCATG 57.896 50.000 23.20 9.48 42.47 3.07
984 997 3.701205 ACCATGACTTACTGTGATGCA 57.299 42.857 0.00 0.00 38.65 3.96
985 998 4.122776 CCTACCATGACTTACTGTGATGC 58.877 47.826 0.00 0.00 38.65 3.91
1012 1040 5.888161 ACCATGACTTCTTTTCTTGACAACT 59.112 36.000 0.00 0.00 0.00 3.16
1018 1046 7.693969 AATCCTACCATGACTTCTTTTCTTG 57.306 36.000 0.00 0.00 0.00 3.02
1021 1049 6.371825 ACGAAATCCTACCATGACTTCTTTTC 59.628 38.462 0.00 0.00 0.00 2.29
1022 1050 6.238648 ACGAAATCCTACCATGACTTCTTTT 58.761 36.000 0.00 0.00 0.00 2.27
1023 1051 5.805728 ACGAAATCCTACCATGACTTCTTT 58.194 37.500 0.00 0.00 0.00 2.52
1024 1052 5.422214 ACGAAATCCTACCATGACTTCTT 57.578 39.130 0.00 0.00 0.00 2.52
1025 1053 5.422214 AACGAAATCCTACCATGACTTCT 57.578 39.130 0.00 0.00 0.00 2.85
1026 1054 6.035758 GTGTAACGAAATCCTACCATGACTTC 59.964 42.308 0.00 0.00 0.00 3.01
1027 1055 5.873164 GTGTAACGAAATCCTACCATGACTT 59.127 40.000 0.00 0.00 0.00 3.01
1028 1056 5.416947 GTGTAACGAAATCCTACCATGACT 58.583 41.667 0.00 0.00 0.00 3.41
1029 1057 4.569564 GGTGTAACGAAATCCTACCATGAC 59.430 45.833 0.00 0.00 38.12 3.06
1031 1059 4.509616 TGGTGTAACGAAATCCTACCATG 58.490 43.478 0.00 0.00 38.12 3.66
1032 1060 4.829872 TGGTGTAACGAAATCCTACCAT 57.170 40.909 0.00 0.00 38.12 3.55
1033 1061 4.829872 ATGGTGTAACGAAATCCTACCA 57.170 40.909 0.00 0.00 40.58 3.25
1034 1062 4.201881 GCAATGGTGTAACGAAATCCTACC 60.202 45.833 0.00 0.00 38.12 3.18
1035 1063 4.393680 TGCAATGGTGTAACGAAATCCTAC 59.606 41.667 0.00 0.00 38.12 3.18
1036 1064 4.580868 TGCAATGGTGTAACGAAATCCTA 58.419 39.130 0.00 0.00 38.12 2.94
1038 1066 3.840890 TGCAATGGTGTAACGAAATCC 57.159 42.857 0.00 0.00 38.12 3.01
1039 1067 6.804295 TGTATTTGCAATGGTGTAACGAAATC 59.196 34.615 0.00 0.00 38.12 2.17
1040 1068 6.584563 GTGTATTTGCAATGGTGTAACGAAAT 59.415 34.615 0.00 0.00 38.12 2.17
1041 1069 5.915758 GTGTATTTGCAATGGTGTAACGAAA 59.084 36.000 0.00 0.00 38.12 3.46
1045 1377 5.856455 GTCAGTGTATTTGCAATGGTGTAAC 59.144 40.000 0.00 0.00 35.46 2.50
1051 1383 3.188254 TCGTGTCAGTGTATTTGCAATGG 59.812 43.478 0.00 0.00 35.46 3.16
1076 1412 3.839293 CAGTACCTAGTCAGCACAGAAC 58.161 50.000 0.00 0.00 0.00 3.01
1083 1419 1.134965 CACCAGCAGTACCTAGTCAGC 60.135 57.143 0.00 0.00 0.00 4.26
1094 1430 3.576118 CTCCACTATATAGCACCAGCAGT 59.424 47.826 9.78 0.00 45.49 4.40
1096 1432 2.899900 CCTCCACTATATAGCACCAGCA 59.100 50.000 9.78 0.00 45.49 4.41
1097 1433 3.165875 TCCTCCACTATATAGCACCAGC 58.834 50.000 9.78 0.00 42.56 4.85
1130 1480 3.209410 GCTCCTGACCATGTCCAAATAG 58.791 50.000 0.00 0.00 0.00 1.73
1200 1553 0.957888 AGGCCAGCGAGAAGAAAAGC 60.958 55.000 5.01 0.00 0.00 3.51
1222 1578 1.933247 GAGGATCGAAGCTGGACAAG 58.067 55.000 0.00 0.00 0.00 3.16
1257 1630 2.840038 TGGACATGTTGGTAGATGCTCT 59.160 45.455 0.00 0.00 0.00 4.09
1347 1720 2.591753 CGCCAGGATCACCACCAT 59.408 61.111 0.00 0.00 38.94 3.55
1390 1763 4.020617 CGGAGTTGAGCCCCAGCA 62.021 66.667 0.00 0.00 43.56 4.41
1532 1905 4.789075 TGCTTCTCGCCGGCGTAC 62.789 66.667 44.16 29.29 40.74 3.67
1739 2127 4.641645 TGCAGGACTTGGCGGTGG 62.642 66.667 0.00 0.00 0.00 4.61
1747 2138 2.213499 CGTTCAGAACTTGCAGGACTT 58.787 47.619 11.60 0.00 0.00 3.01
1750 2141 0.884704 GGCGTTCAGAACTTGCAGGA 60.885 55.000 11.60 0.00 0.00 3.86
1780 2174 4.489679 AAAAAGAGGCAAACTGATCGAC 57.510 40.909 0.00 0.00 0.00 4.20
1802 2196 5.807520 GTGATCTGAACTCTGAAGCGAATAA 59.192 40.000 0.00 0.00 0.00 1.40
1803 2197 5.126222 AGTGATCTGAACTCTGAAGCGAATA 59.874 40.000 0.00 0.00 0.00 1.75
1804 2198 4.081752 AGTGATCTGAACTCTGAAGCGAAT 60.082 41.667 0.00 0.00 0.00 3.34
1863 2257 6.909550 AAGCAAACCATCAAACAGGTTATA 57.090 33.333 0.00 0.00 46.92 0.98
1891 2291 2.119801 TGAAAGCTCTCAAGATGGCC 57.880 50.000 0.00 0.00 0.00 5.36
1949 2440 6.427853 TGATGACTTGTCAAAGAATACACAGG 59.572 38.462 7.57 0.00 36.84 4.00
1987 2478 9.333724 GACAAATATTTAGGAACGGAGGAAATA 57.666 33.333 0.00 0.00 0.00 1.40
1988 2479 8.053355 AGACAAATATTTAGGAACGGAGGAAAT 58.947 33.333 0.00 0.00 0.00 2.17
1989 2480 7.399634 AGACAAATATTTAGGAACGGAGGAAA 58.600 34.615 0.00 0.00 0.00 3.13
1990 2481 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
1991 2482 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
1992 2483 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1993 2484 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1994 2485 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1995 2486 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2008 2499 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2009 2500 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2010 2501 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2011 2502 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2012 2503 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2013 2504 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2014 2505 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2015 2506 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2016 2507 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2017 2508 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2018 2509 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2019 2510 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2020 2511 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
2021 2512 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2022 2513 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2023 2514 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2024 2515 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2025 2516 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2026 2517 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2027 2518 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
2028 2519 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2029 2520 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
2030 2521 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
2031 2522 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
2032 2523 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
2033 2524 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
2034 2525 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
2035 2526 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
2036 2527 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
2037 2528 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
2038 2529 6.402118 GCTTCACTCATTTTGCTTCGTATGTA 60.402 38.462 0.00 0.00 0.00 2.29
2039 2530 5.617751 GCTTCACTCATTTTGCTTCGTATGT 60.618 40.000 0.00 0.00 0.00 2.29
2040 2531 4.790140 GCTTCACTCATTTTGCTTCGTATG 59.210 41.667 0.00 0.00 0.00 2.39
2041 2532 4.697352 AGCTTCACTCATTTTGCTTCGTAT 59.303 37.500 0.00 0.00 0.00 3.06
2042 2533 4.065088 AGCTTCACTCATTTTGCTTCGTA 58.935 39.130 0.00 0.00 0.00 3.43
2043 2534 2.880890 AGCTTCACTCATTTTGCTTCGT 59.119 40.909 0.00 0.00 0.00 3.85
2044 2535 3.549299 AGCTTCACTCATTTTGCTTCG 57.451 42.857 0.00 0.00 0.00 3.79
2045 2536 5.049129 AGTGTAGCTTCACTCATTTTGCTTC 60.049 40.000 19.22 0.00 44.07 3.86
2046 2537 4.823989 AGTGTAGCTTCACTCATTTTGCTT 59.176 37.500 19.22 0.00 44.07 3.91
2047 2538 4.392940 AGTGTAGCTTCACTCATTTTGCT 58.607 39.130 19.22 0.00 44.07 3.91
2048 2539 4.756084 AGTGTAGCTTCACTCATTTTGC 57.244 40.909 19.22 0.00 44.07 3.68
2057 2548 7.540299 AGACATACTTTAGAGTGTAGCTTCAC 58.460 38.462 15.08 15.08 36.60 3.18
2058 2549 7.704578 AGACATACTTTAGAGTGTAGCTTCA 57.295 36.000 0.00 0.00 36.60 3.02
2088 2579 8.685427 TTTCAAATGAACTACCACATATGGATG 58.315 33.333 7.80 0.00 40.19 3.51
2089 2580 8.821686 TTTCAAATGAACTACCACATATGGAT 57.178 30.769 7.80 0.00 40.19 3.41
2090 2581 8.821686 ATTTCAAATGAACTACCACATATGGA 57.178 30.769 7.80 0.00 40.19 3.41
2120 2611 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2121 2612 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2122 2613 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2123 2614 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2124 2615 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2125 2616 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2126 2617 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2127 2618 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2128 2619 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2129 2620 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2130 2621 7.450903 CAAATACTCCCTCCGTTCCTAAATAT 58.549 38.462 0.00 0.00 0.00 1.28
2131 2622 6.687139 GCAAATACTCCCTCCGTTCCTAAATA 60.687 42.308 0.00 0.00 0.00 1.40
2132 2623 5.681639 CAAATACTCCCTCCGTTCCTAAAT 58.318 41.667 0.00 0.00 0.00 1.40
2133 2624 4.624604 GCAAATACTCCCTCCGTTCCTAAA 60.625 45.833 0.00 0.00 0.00 1.85
2134 2625 3.118519 GCAAATACTCCCTCCGTTCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
2135 2626 2.433239 GCAAATACTCCCTCCGTTCCTA 59.567 50.000 0.00 0.00 0.00 2.94
2136 2627 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
2137 2628 1.209747 AGCAAATACTCCCTCCGTTCC 59.790 52.381 0.00 0.00 0.00 3.62
2138 2629 2.693267 AGCAAATACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
2139 2630 4.163458 TGAATAGCAAATACTCCCTCCGTT 59.837 41.667 0.00 0.00 0.00 4.44
2140 2631 3.709653 TGAATAGCAAATACTCCCTCCGT 59.290 43.478 0.00 0.00 0.00 4.69
2141 2632 4.336889 TGAATAGCAAATACTCCCTCCG 57.663 45.455 0.00 0.00 0.00 4.63
2142 2633 4.932200 CGATGAATAGCAAATACTCCCTCC 59.068 45.833 0.00 0.00 0.00 4.30
2143 2634 4.390297 GCGATGAATAGCAAATACTCCCTC 59.610 45.833 0.00 0.00 0.00 4.30
2144 2635 4.040952 AGCGATGAATAGCAAATACTCCCT 59.959 41.667 0.00 0.00 35.48 4.20
2145 2636 4.319177 AGCGATGAATAGCAAATACTCCC 58.681 43.478 0.00 0.00 35.48 4.30
2146 2637 5.237344 ACAAGCGATGAATAGCAAATACTCC 59.763 40.000 0.00 0.00 35.48 3.85
2147 2638 6.132056 CACAAGCGATGAATAGCAAATACTC 58.868 40.000 0.00 0.00 35.48 2.59
2148 2639 5.586243 ACACAAGCGATGAATAGCAAATACT 59.414 36.000 0.00 0.00 35.48 2.12
2149 2640 5.678483 CACACAAGCGATGAATAGCAAATAC 59.322 40.000 0.00 0.00 35.48 1.89
2150 2641 5.584251 TCACACAAGCGATGAATAGCAAATA 59.416 36.000 0.00 0.00 35.48 1.40
2170 2661 3.306989 CCAGTGCAGATAGGAGTTTCACA 60.307 47.826 0.00 0.00 0.00 3.58
2177 2668 1.393603 TCGACCAGTGCAGATAGGAG 58.606 55.000 0.00 0.00 0.00 3.69
2181 2672 3.270027 CCAAAATCGACCAGTGCAGATA 58.730 45.455 0.00 0.00 0.00 1.98
2185 2676 1.523154 GCCCAAAATCGACCAGTGCA 61.523 55.000 0.00 0.00 0.00 4.57
2190 2681 0.316841 GCTTTGCCCAAAATCGACCA 59.683 50.000 0.00 0.00 0.00 4.02
2192 2683 1.418373 GTGCTTTGCCCAAAATCGAC 58.582 50.000 0.00 0.00 0.00 4.20
2205 2696 2.660064 ATCTCGGCCTCGGTGCTTT 61.660 57.895 0.00 0.00 36.95 3.51
2218 2709 4.996434 GCCGGCATCCCCATCTCG 62.996 72.222 24.80 0.00 0.00 4.04
2248 2771 2.032681 GTCGCCCCAAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
2284 2814 0.545548 AACCTCTCACTCCCCTCCAC 60.546 60.000 0.00 0.00 0.00 4.02
2319 2849 2.363795 CACCAGCGACCTCCCCTA 60.364 66.667 0.00 0.00 0.00 3.53
2340 2870 0.179134 CTTGACCCCGACACGATCTC 60.179 60.000 0.00 0.00 0.00 2.75
2345 2875 2.261671 CCTCTTGACCCCGACACG 59.738 66.667 0.00 0.00 0.00 4.49
2356 2886 0.613012 CTCCCCAAAAGCCCCTCTTG 60.613 60.000 0.00 0.00 34.67 3.02
2357 2887 1.776969 CTCCCCAAAAGCCCCTCTT 59.223 57.895 0.00 0.00 36.34 2.85
2367 2897 4.211330 TGTTGCCGCCTCCCCAAA 62.211 61.111 0.00 0.00 0.00 3.28
2415 2945 2.591715 GACCAGTGGCGTTGCTGT 60.592 61.111 9.78 0.00 0.00 4.40
2430 2960 4.612412 TTCCGCACCACCCACGAC 62.612 66.667 0.00 0.00 0.00 4.34
2567 3167 3.211045 GAGGGCTTGTTACTTGTTGACA 58.789 45.455 0.00 0.00 0.00 3.58
2632 3234 1.267121 GGACTAGCACCTCCAAGTCA 58.733 55.000 3.97 0.00 40.09 3.41
2656 3267 4.295905 ACTATAGGATTCCTCCCAACCA 57.704 45.455 8.94 0.00 43.21 3.67
2657 3268 4.041815 GGAACTATAGGATTCCTCCCAACC 59.958 50.000 8.94 4.01 43.21 3.77
2676 3287 8.294577 CCAAACCACTAAAACTACATAAGGAAC 58.705 37.037 0.00 0.00 0.00 3.62
2684 3295 4.128643 CCGTCCAAACCACTAAAACTACA 58.871 43.478 0.00 0.00 0.00 2.74
2731 3343 2.952310 GGAGGACATTATTGCAACCCTC 59.048 50.000 0.00 10.69 38.31 4.30
2734 3346 3.763897 ACAAGGAGGACATTATTGCAACC 59.236 43.478 0.00 0.00 0.00 3.77
2738 3350 5.703130 GGATAGACAAGGAGGACATTATTGC 59.297 44.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.