Multiple sequence alignment - TraesCS7B01G380500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G380500 chr7B 100.000 6693 0 0 1 6693 645384079 645390771 0.000000e+00 12360.0
1 TraesCS7B01G380500 chr7D 97.212 2080 45 8 2781 4850 579751344 579753420 0.000000e+00 3507.0
2 TraesCS7B01G380500 chr7D 87.029 1565 120 34 5170 6691 579753718 579755242 0.000000e+00 1688.0
3 TraesCS7B01G380500 chr7D 92.997 971 43 14 1771 2735 579750098 579751049 0.000000e+00 1393.0
4 TraesCS7B01G380500 chr7D 83.914 976 67 29 1 921 579748254 579749194 0.000000e+00 850.0
5 TraesCS7B01G380500 chr7D 94.444 54 2 1 2733 2786 579751213 579751265 1.550000e-11 82.4
6 TraesCS7B01G380500 chr7A 96.571 2129 52 11 2733 4850 671414618 671416736 0.000000e+00 3507.0
7 TraesCS7B01G380500 chr7A 90.706 1345 75 21 5170 6480 671417036 671418364 0.000000e+00 1746.0
8 TraesCS7B01G380500 chr7A 88.925 1228 83 28 1534 2735 671413253 671414453 0.000000e+00 1465.0
9 TraesCS7B01G380500 chr7A 86.413 184 13 2 6508 6691 671418544 671418715 2.460000e-44 191.0
10 TraesCS7B01G380500 chr7A 88.112 143 6 6 776 911 671412510 671412648 6.950000e-35 159.0
11 TraesCS7B01G380500 chr6B 78.552 373 61 17 3736 4098 210782810 210782447 1.880000e-55 228.0
12 TraesCS7B01G380500 chr6B 77.323 269 47 12 5298 5559 210781272 210781011 5.410000e-31 147.0
13 TraesCS7B01G380500 chr6B 82.203 118 19 2 3975 4091 622563074 622563190 4.270000e-17 100.0
14 TraesCS7B01G380500 chr6D 78.142 366 62 13 3736 4091 119140611 119140254 4.060000e-52 217.0
15 TraesCS7B01G380500 chr6D 77.143 280 46 11 5298 5566 119139047 119138775 5.410000e-31 147.0
16 TraesCS7B01G380500 chr6A 78.237 363 62 12 3738 4091 147305244 147304890 4.060000e-52 217.0
17 TraesCS7B01G380500 chr6A 76.786 280 47 12 5298 5566 147303579 147303307 2.520000e-29 141.0
18 TraesCS7B01G380500 chr5B 88.136 59 6 1 6601 6659 17977607 17977550 1.200000e-07 69.4
19 TraesCS7B01G380500 chr5A 95.000 40 2 0 5520 5559 663306110 663306149 5.600000e-06 63.9
20 TraesCS7B01G380500 chr4D 95.000 40 2 0 5520 5559 483138713 483138752 5.600000e-06 63.9
21 TraesCS7B01G380500 chr4B 95.000 40 2 0 5520 5559 613376151 613376190 5.600000e-06 63.9
22 TraesCS7B01G380500 chr3B 90.909 44 3 1 6617 6660 820452803 820452761 2.610000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G380500 chr7B 645384079 645390771 6692 False 12360.00 12360 100.0000 1 6693 1 chr7B.!!$F1 6692
1 TraesCS7B01G380500 chr7D 579748254 579755242 6988 False 1504.08 3507 91.1192 1 6691 5 chr7D.!!$F1 6690
2 TraesCS7B01G380500 chr7A 671412510 671418715 6205 False 1413.60 3507 90.1454 776 6691 5 chr7A.!!$F1 5915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 776 0.040942 AGAGGCAGAAGCAGAGGAGA 59.959 55.000 0.00 0.0 44.61 3.71 F
1149 1278 0.037605 GACGGAACCCATGTCGAACT 60.038 55.000 0.00 0.0 0.00 3.01 F
1150 1279 0.037605 ACGGAACCCATGTCGAACTC 60.038 55.000 0.00 0.0 0.00 3.01 F
1640 1807 0.039074 CTCGCCGTGAGTTGTCTTCT 60.039 55.000 0.41 0.0 40.03 2.85 F
1641 1808 0.387929 TCGCCGTGAGTTGTCTTCTT 59.612 50.000 0.00 0.0 0.00 2.52 F
1642 1809 0.508641 CGCCGTGAGTTGTCTTCTTG 59.491 55.000 0.00 0.0 0.00 3.02 F
1864 2259 1.138266 AGACAACGTAACACTGTGCCT 59.862 47.619 7.90 0.0 0.00 4.75 F
2728 3154 1.663702 CAGGACGAACCGACACACC 60.664 63.158 0.00 0.0 44.74 4.16 F
3997 4682 0.452987 CGGATGCTCCCATGTTTGTG 59.547 55.000 0.00 0.0 31.13 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1710 0.807667 GCCTGCGCCATATATCGGAG 60.808 60.000 4.18 7.96 42.51 4.63 R
2090 2487 1.545582 CCATTGATGCCGACCTTTGTT 59.454 47.619 0.00 0.00 0.00 2.83 R
2728 3154 5.163893 CCGTACACATAAGCAAACTAGTTGG 60.164 44.000 9.34 7.35 37.73 3.77 R
3601 4283 4.072131 TCGCTTGCAAATTTCTAGGAACT 58.928 39.130 0.00 0.00 46.37 3.01 R
3623 4305 4.977963 CACAAGCAACGAGTTGATGAAAAT 59.022 37.500 18.93 0.00 42.93 1.82 R
3680 4362 1.737793 CAACAATGCGTTAGGGGAGAC 59.262 52.381 0.00 0.00 35.52 3.36 R
3949 4634 3.798202 AGCCGATATCACCACTTTCTTC 58.202 45.455 3.12 0.00 0.00 2.87 R
4280 4968 0.615331 TGAACCTCTCAGCCCATGAC 59.385 55.000 0.00 0.00 33.22 3.06 R
6045 6786 0.598158 AAGCGCAACAAGCAACATGG 60.598 50.000 11.47 0.00 46.13 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.927895 CTAAAGGACCTAGCACTGCG 58.072 55.000 0.00 0.00 0.00 5.18
30 31 2.202623 GACCTAGCACTGCGACCG 60.203 66.667 0.00 0.00 0.00 4.79
45 46 1.794437 CGACCGCTCTTAGGAAAGACG 60.794 57.143 0.00 0.00 36.80 4.18
94 95 4.202040 CCAGTGATCAGTTTGAGCAAAACA 60.202 41.667 15.01 0.00 44.97 2.83
123 125 4.261801 CGTCAAAGGGATAGAACAATGGT 58.738 43.478 0.00 0.00 0.00 3.55
168 176 1.089920 ATCAAGACATCGCTGCCAAC 58.910 50.000 0.00 0.00 0.00 3.77
194 202 6.237901 ACACATAGAAAGAACATAAGCCACA 58.762 36.000 0.00 0.00 0.00 4.17
200 208 5.248477 AGAAAGAACATAAGCCACACTCCTA 59.752 40.000 0.00 0.00 0.00 2.94
205 213 4.000988 ACATAAGCCACACTCCTAAAACG 58.999 43.478 0.00 0.00 0.00 3.60
228 236 4.339530 GCTTATCCTTGGTTTCCTCCAATC 59.660 45.833 0.00 0.00 44.94 2.67
295 303 1.900351 CGTCATCAGCTCCTTCCCA 59.100 57.895 0.00 0.00 0.00 4.37
296 304 0.467384 CGTCATCAGCTCCTTCCCAT 59.533 55.000 0.00 0.00 0.00 4.00
298 306 1.135094 TCATCAGCTCCTTCCCATCC 58.865 55.000 0.00 0.00 0.00 3.51
334 351 2.798283 CGTGACTCGCTTCCTTTTTACA 59.202 45.455 0.00 0.00 0.00 2.41
337 354 5.560183 CGTGACTCGCTTCCTTTTTACATTT 60.560 40.000 0.00 0.00 0.00 2.32
345 362 8.626526 TCGCTTCCTTTTTACATTTTAGAACTT 58.373 29.630 0.00 0.00 0.00 2.66
368 385 1.943340 GCTAATGCTAGCTTGTGGGTC 59.057 52.381 17.23 0.00 46.12 4.46
369 386 2.565841 CTAATGCTAGCTTGTGGGTCC 58.434 52.381 17.23 0.00 0.00 4.46
380 397 0.608035 TGTGGGTCCAATTCTTCCGC 60.608 55.000 0.00 0.00 0.00 5.54
381 398 0.608035 GTGGGTCCAATTCTTCCGCA 60.608 55.000 0.00 0.00 0.00 5.69
382 399 0.111446 TGGGTCCAATTCTTCCGCAA 59.889 50.000 0.00 0.00 0.00 4.85
383 400 1.272425 TGGGTCCAATTCTTCCGCAAT 60.272 47.619 0.00 0.00 0.00 3.56
384 401 1.134946 GGGTCCAATTCTTCCGCAATG 59.865 52.381 0.00 0.00 0.00 2.82
385 402 1.469767 GGTCCAATTCTTCCGCAATGC 60.470 52.381 0.00 0.00 0.00 3.56
386 403 1.202114 GTCCAATTCTTCCGCAATGCA 59.798 47.619 5.91 0.00 0.00 3.96
387 404 1.202114 TCCAATTCTTCCGCAATGCAC 59.798 47.619 5.91 0.00 0.00 4.57
388 405 1.067706 CCAATTCTTCCGCAATGCACA 60.068 47.619 5.91 0.00 0.00 4.57
389 406 2.609984 CCAATTCTTCCGCAATGCACAA 60.610 45.455 5.91 0.00 0.00 3.33
390 407 2.642139 ATTCTTCCGCAATGCACAAG 57.358 45.000 5.91 6.43 0.00 3.16
391 408 1.317613 TTCTTCCGCAATGCACAAGT 58.682 45.000 5.91 0.00 0.00 3.16
392 409 0.592637 TCTTCCGCAATGCACAAGTG 59.407 50.000 5.91 0.00 0.00 3.16
414 431 5.339611 GTGCACTGTTTTATTCACGATGAAC 59.660 40.000 10.32 0.00 39.45 3.18
418 446 7.570507 GCACTGTTTTATTCACGATGAACACTA 60.571 37.037 0.00 0.00 39.45 2.74
422 450 9.214957 TGTTTTATTCACGATGAACACTAAGAT 57.785 29.630 0.00 0.00 39.45 2.40
449 484 6.748333 TGAAGATGATGAGAACAAACCATC 57.252 37.500 0.00 0.00 37.71 3.51
451 486 5.089970 AGATGATGAGAACAAACCATCGA 57.910 39.130 0.00 0.00 39.48 3.59
457 492 3.250744 GAGAACAAACCATCGATCGACA 58.749 45.455 22.06 0.00 0.00 4.35
464 499 1.681793 ACCATCGATCGACAGTTAGGG 59.318 52.381 22.06 10.74 0.00 3.53
465 500 1.954382 CCATCGATCGACAGTTAGGGA 59.046 52.381 22.06 0.00 0.00 4.20
466 501 2.030717 CCATCGATCGACAGTTAGGGAG 60.031 54.545 22.06 0.00 0.00 4.30
469 504 2.014857 CGATCGACAGTTAGGGAGTGA 58.985 52.381 10.26 0.00 32.77 3.41
473 508 1.196012 GACAGTTAGGGAGTGAGGGG 58.804 60.000 0.00 0.00 32.77 4.79
474 509 0.252742 ACAGTTAGGGAGTGAGGGGG 60.253 60.000 0.00 0.00 32.77 5.40
506 541 3.947834 GGGGGAGTTGTTATGTTGATCAG 59.052 47.826 0.00 0.00 0.00 2.90
526 561 3.007182 CAGGTCAAATGGCACCTCAAAAT 59.993 43.478 0.00 0.00 41.41 1.82
593 630 9.676195 AAAACTTCAAACCAAACAAATTTTCTG 57.324 25.926 0.00 0.00 0.00 3.02
594 631 7.977789 ACTTCAAACCAAACAAATTTTCTGT 57.022 28.000 0.00 0.00 0.00 3.41
595 632 7.805700 ACTTCAAACCAAACAAATTTTCTGTG 58.194 30.769 0.00 0.00 0.00 3.66
643 681 9.777297 TTTTTCAAGGAATTTCCAAAAGATAGG 57.223 29.630 17.57 0.00 39.61 2.57
679 734 8.659925 AATGTTTGATTTTGTCATAGTTTGCA 57.340 26.923 0.00 0.00 36.54 4.08
688 743 3.193267 TGTCATAGTTTGCATTGGAAGGC 59.807 43.478 0.00 0.00 36.03 4.35
696 751 2.040544 CATTGGAAGGCGGCGAAGT 61.041 57.895 12.98 0.00 0.00 3.01
721 776 0.040942 AGAGGCAGAAGCAGAGGAGA 59.959 55.000 0.00 0.00 44.61 3.71
769 826 0.746659 GAGAGAGAAGCAGAGGAGGC 59.253 60.000 0.00 0.00 0.00 4.70
869 936 2.018582 GAGATCGCTCGCTGCACAAC 62.019 60.000 0.00 0.00 43.06 3.32
870 937 3.411703 GATCGCTCGCTGCACAACG 62.412 63.158 0.00 0.00 43.06 4.10
909 976 4.862823 CCGTCCCCTCCCCCTCTC 62.863 77.778 0.00 0.00 0.00 3.20
910 977 4.862823 CGTCCCCTCCCCCTCTCC 62.863 77.778 0.00 0.00 0.00 3.71
911 978 4.500826 GTCCCCTCCCCCTCTCCC 62.501 77.778 0.00 0.00 0.00 4.30
912 979 4.761304 TCCCCTCCCCCTCTCCCT 62.761 72.222 0.00 0.00 0.00 4.20
913 980 4.179599 CCCCTCCCCCTCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
914 981 3.039526 CCCTCCCCCTCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
915 982 2.612251 CCTCCCCCTCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
916 983 2.612251 CTCCCCCTCTCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
917 984 3.430497 TCCCCCTCTCCCTCTCCG 61.430 72.222 0.00 0.00 0.00 4.63
1032 1099 4.821589 CTCTCCCTCCGCGCCAAC 62.822 72.222 0.00 0.00 0.00 3.77
1117 1196 2.219875 CCCATCCCGGATCTCCCAG 61.220 68.421 0.73 0.00 36.56 4.45
1132 1261 1.303643 CCAGCTCCCCCTGTTTGAC 60.304 63.158 0.00 0.00 0.00 3.18
1143 1272 1.604604 CTGTTTGACGGAACCCATGT 58.395 50.000 0.00 0.00 0.00 3.21
1146 1275 0.393448 TTTGACGGAACCCATGTCGA 59.607 50.000 0.00 0.00 35.40 4.20
1148 1277 0.320073 TGACGGAACCCATGTCGAAC 60.320 55.000 0.00 0.00 35.40 3.95
1149 1278 0.037605 GACGGAACCCATGTCGAACT 60.038 55.000 0.00 0.00 0.00 3.01
1150 1279 0.037605 ACGGAACCCATGTCGAACTC 60.038 55.000 0.00 0.00 0.00 3.01
1151 1280 0.739813 CGGAACCCATGTCGAACTCC 60.740 60.000 0.00 0.00 0.00 3.85
1152 1281 0.739813 GGAACCCATGTCGAACTCCG 60.740 60.000 0.00 0.00 40.25 4.63
1164 1293 4.675190 TCGAACTCCGAAGTACTTACAG 57.325 45.455 8.42 7.20 45.43 2.74
1165 1294 3.120060 TCGAACTCCGAAGTACTTACAGC 60.120 47.826 8.42 0.00 45.43 4.40
1167 1296 1.471684 ACTCCGAAGTACTTACAGCCG 59.528 52.381 8.42 7.37 32.59 5.52
1168 1297 0.813184 TCCGAAGTACTTACAGCCGG 59.187 55.000 20.88 20.88 36.63 6.13
1170 1299 1.468736 CCGAAGTACTTACAGCCGGAC 60.469 57.143 21.89 0.00 37.07 4.79
1179 1308 3.749981 CAGCCGGACTGTTGCTTT 58.250 55.556 5.05 0.00 41.86 3.51
1249 1381 6.094048 ACTTGTTTTCCTGTTGATATCCGATG 59.906 38.462 0.00 0.00 0.00 3.84
1261 1393 4.347876 TGATATCCGATGAATGGAACCTGT 59.652 41.667 0.00 0.00 39.39 4.00
1284 1416 4.084223 TCGTTCTTTAACCGCTTGATTGAC 60.084 41.667 0.00 0.00 31.46 3.18
1293 1425 2.282555 CCGCTTGATTGACAGTCGTATG 59.717 50.000 0.00 0.00 0.00 2.39
1296 1428 1.921243 TGATTGACAGTCGTATGCCG 58.079 50.000 0.00 0.00 38.13 5.69
1306 1438 0.753867 TCGTATGCCGCCCATTCTAA 59.246 50.000 0.00 0.00 35.34 2.10
1312 1444 1.823899 CCGCCCATTCTAACAGCCC 60.824 63.158 0.00 0.00 0.00 5.19
1314 1446 1.455773 GCCCATTCTAACAGCCCCC 60.456 63.158 0.00 0.00 0.00 5.40
1327 1459 1.526917 GCCCCCGATCCTGAATGTG 60.527 63.158 0.00 0.00 0.00 3.21
1346 1478 7.611079 TGAATGTGTTCATGTTATCCTGAATCA 59.389 33.333 0.00 0.00 39.36 2.57
1350 1482 5.357878 TGTTCATGTTATCCTGAATCAAGGC 59.642 40.000 0.00 0.00 37.24 4.35
1366 1498 1.276622 AGGCCTAGATTGGTTCGTGT 58.723 50.000 1.29 0.00 0.00 4.49
1387 1519 6.620678 GTGTTGATTTAGCCAGAAATTAGCA 58.379 36.000 0.00 0.00 0.00 3.49
1388 1520 6.749118 GTGTTGATTTAGCCAGAAATTAGCAG 59.251 38.462 0.00 0.00 30.07 4.24
1417 1549 0.609406 GGGGGTTCAAACAGAGAGCC 60.609 60.000 0.00 0.00 35.84 4.70
1418 1550 0.402121 GGGGTTCAAACAGAGAGCCT 59.598 55.000 0.00 0.00 36.69 4.58
1441 1573 6.377996 CCTGGTTTTCCTGAATGTATTCATGA 59.622 38.462 7.67 7.87 44.92 3.07
1444 1576 6.698766 GGTTTTCCTGAATGTATTCATGATGC 59.301 38.462 11.58 6.77 44.92 3.91
1484 1617 3.417101 TGGTTCGTGTTGATTTAGCCAT 58.583 40.909 0.00 0.00 0.00 4.40
1507 1670 2.928801 TTGGCTCACTCTTGCAACTA 57.071 45.000 0.00 0.00 0.00 2.24
1516 1679 4.270084 TCACTCTTGCAACTAAAACTCGTG 59.730 41.667 0.00 0.00 0.00 4.35
1523 1686 2.796031 CAACTAAAACTCGTGCACCGTA 59.204 45.455 12.15 0.00 37.94 4.02
1529 1692 1.425412 ACTCGTGCACCGTAAATGTC 58.575 50.000 12.15 0.00 37.94 3.06
1530 1693 0.719465 CTCGTGCACCGTAAATGTCC 59.281 55.000 12.15 0.00 37.94 4.02
1532 1695 0.951525 CGTGCACCGTAAATGTCCCA 60.952 55.000 12.15 0.00 0.00 4.37
1547 1710 4.487714 TGTCCCACCTGTTGATCTATTC 57.512 45.455 0.00 0.00 0.00 1.75
1550 1713 3.711704 TCCCACCTGTTGATCTATTCTCC 59.288 47.826 0.00 0.00 0.00 3.71
1593 1760 1.002087 CGTGAGGAGCAAGGTTACCTT 59.998 52.381 11.39 11.39 45.88 3.50
1624 1791 0.958091 CCATCAGAGCTACCTCCTCG 59.042 60.000 0.00 0.00 38.96 4.63
1636 1803 1.444553 CTCCTCGCCGTGAGTTGTC 60.445 63.158 8.14 0.00 43.64 3.18
1637 1804 1.867919 CTCCTCGCCGTGAGTTGTCT 61.868 60.000 8.14 0.00 43.64 3.41
1638 1805 1.006102 CCTCGCCGTGAGTTGTCTT 60.006 57.895 8.14 0.00 43.64 3.01
1639 1806 1.009389 CCTCGCCGTGAGTTGTCTTC 61.009 60.000 8.14 0.00 43.64 2.87
1640 1807 0.039074 CTCGCCGTGAGTTGTCTTCT 60.039 55.000 0.41 0.00 40.03 2.85
1641 1808 0.387929 TCGCCGTGAGTTGTCTTCTT 59.612 50.000 0.00 0.00 0.00 2.52
1642 1809 0.508641 CGCCGTGAGTTGTCTTCTTG 59.491 55.000 0.00 0.00 0.00 3.02
1643 1810 1.583054 GCCGTGAGTTGTCTTCTTGT 58.417 50.000 0.00 0.00 0.00 3.16
1644 1811 1.940613 GCCGTGAGTTGTCTTCTTGTT 59.059 47.619 0.00 0.00 0.00 2.83
1645 1812 2.286418 GCCGTGAGTTGTCTTCTTGTTG 60.286 50.000 0.00 0.00 0.00 3.33
1646 1813 2.286418 CCGTGAGTTGTCTTCTTGTTGC 60.286 50.000 0.00 0.00 0.00 4.17
1858 2253 3.173668 TCTGCAAGACAACGTAACACT 57.826 42.857 0.00 0.00 38.67 3.55
1859 2254 2.863740 TCTGCAAGACAACGTAACACTG 59.136 45.455 0.00 0.00 38.67 3.66
1860 2255 2.607635 CTGCAAGACAACGTAACACTGT 59.392 45.455 0.00 0.00 34.07 3.55
1861 2256 2.350192 TGCAAGACAACGTAACACTGTG 59.650 45.455 6.19 6.19 0.00 3.66
1862 2257 2.849502 GCAAGACAACGTAACACTGTGC 60.850 50.000 7.90 0.00 0.00 4.57
1863 2258 1.578583 AGACAACGTAACACTGTGCC 58.421 50.000 7.90 0.00 0.00 5.01
1864 2259 1.138266 AGACAACGTAACACTGTGCCT 59.862 47.619 7.90 0.00 0.00 4.75
1865 2260 1.937899 GACAACGTAACACTGTGCCTT 59.062 47.619 7.90 0.00 0.00 4.35
1866 2261 1.937899 ACAACGTAACACTGTGCCTTC 59.062 47.619 7.90 0.00 0.00 3.46
1877 2272 2.620585 ACTGTGCCTTCTTTTCTTCTGC 59.379 45.455 0.00 0.00 0.00 4.26
1947 2344 2.202756 GAGCCCGTAAGAGCCACG 60.203 66.667 0.00 0.00 43.02 4.94
2073 2470 7.862512 TTTACCTTTTCACTTTCCGTAGAAA 57.137 32.000 0.00 0.00 39.70 2.52
2090 2487 5.047519 CGTAGAAACTTCTAGTGGGGAGAAA 60.048 44.000 0.00 0.00 40.23 2.52
2121 2518 2.165030 GGCATCAATGGTGAGTTCCTTG 59.835 50.000 0.00 0.00 37.14 3.61
2122 2519 2.821969 GCATCAATGGTGAGTTCCTTGT 59.178 45.455 0.00 0.00 37.14 3.16
2228 2632 9.780186 ATAGTTGGGCTATACTTTGTAATCTTC 57.220 33.333 0.00 0.00 38.56 2.87
2325 2745 2.500098 CGGATTGGGAGGTTAGTTCTGA 59.500 50.000 0.00 0.00 0.00 3.27
2530 2950 7.229907 ACCGGACTATTGTTTTTGATTTACAGT 59.770 33.333 9.46 0.00 0.00 3.55
2595 3017 7.112779 AGGAAGTAATGATCCGTTTTCAGATT 58.887 34.615 0.00 0.00 0.00 2.40
2632 3057 4.464069 AGTGAGCTGTTAGATGAGAACC 57.536 45.455 0.00 0.00 0.00 3.62
2688 3114 6.662865 TCACAATTCACCACCATATGTTTT 57.337 33.333 1.24 0.00 0.00 2.43
2691 3117 6.808212 CACAATTCACCACCATATGTTTTCTC 59.192 38.462 1.24 0.00 0.00 2.87
2728 3154 1.663702 CAGGACGAACCGACACACC 60.664 63.158 0.00 0.00 44.74 4.16
2735 3161 1.792006 GAACCGACACACCCAACTAG 58.208 55.000 0.00 0.00 0.00 2.57
3002 3681 7.990314 TCCCGTTTGATTCATTCACTATATTCA 59.010 33.333 0.00 0.00 32.84 2.57
3251 3930 3.909430 TGTCCTTACAGTTTCACTAGCG 58.091 45.455 0.00 0.00 0.00 4.26
3264 3943 2.229062 TCACTAGCGAGTCAGGACAAAG 59.771 50.000 0.00 0.00 31.73 2.77
3275 3954 6.529829 CGAGTCAGGACAAAGATCTTCTTTAG 59.470 42.308 8.78 0.00 44.23 1.85
3336 4015 8.624776 CATATCTCTTTTCTTATCAACCCCAAC 58.375 37.037 0.00 0.00 0.00 3.77
3593 4275 4.159506 GCTCACTTGGGTAAAATTATGGCA 59.840 41.667 0.00 0.00 0.00 4.92
3601 4283 8.768501 TTGGGTAAAATTATGGCATACATGTA 57.231 30.769 8.27 8.27 40.82 2.29
3623 4305 4.072131 AGTTCCTAGAAATTTGCAAGCGA 58.928 39.130 0.00 0.00 0.00 4.93
3997 4682 0.452987 CGGATGCTCCCATGTTTGTG 59.547 55.000 0.00 0.00 31.13 3.33
4039 4724 4.584638 TTACAACCCTAGCATGGATGTT 57.415 40.909 7.25 0.00 32.23 2.71
4094 4779 2.355716 GCTCCTGTTGCCAAGGTATACA 60.356 50.000 5.01 0.00 0.00 2.29
4201 4889 5.163364 TGTTTATTGTTTGCAGGTTGTCCAT 60.163 36.000 0.00 0.00 35.89 3.41
4280 4968 7.996098 TTTCTTTCTCCCTGTTAATACTTGG 57.004 36.000 0.00 0.00 0.00 3.61
4515 5203 7.913674 AATGTTTTGTTTTTGCAGGTTTCTA 57.086 28.000 0.00 0.00 0.00 2.10
4539 5227 9.334693 CTAATGTTGAACTTCTTGCTTTGATAC 57.665 33.333 0.00 0.00 0.00 2.24
4652 5340 1.801178 GACCTGCCGACTTGAGAAAAG 59.199 52.381 0.00 0.00 0.00 2.27
4709 5397 8.443160 CAAGTATGTACACCAATCTAACAGTTG 58.557 37.037 0.00 0.00 0.00 3.16
4801 5490 3.132289 TCTGACCAAGTCAACTTCTCGTT 59.868 43.478 0.00 0.00 42.26 3.85
4824 5513 9.983804 CGTTAACTTTATTATTCCAAGTTCTCC 57.016 33.333 3.71 0.00 40.44 3.71
4837 5526 7.989947 TCCAAGTTCTCCTTATTGGTATAGT 57.010 36.000 2.99 0.00 42.32 2.12
4838 5527 9.496710 TTCCAAGTTCTCCTTATTGGTATAGTA 57.503 33.333 2.99 0.00 42.32 1.82
4839 5528 9.670442 TCCAAGTTCTCCTTATTGGTATAGTAT 57.330 33.333 2.99 0.00 42.32 2.12
4840 5529 9.712305 CCAAGTTCTCCTTATTGGTATAGTATG 57.288 37.037 0.00 0.00 37.90 2.39
4841 5530 9.209175 CAAGTTCTCCTTATTGGTATAGTATGC 57.791 37.037 0.00 0.00 37.07 3.14
4842 5531 7.603651 AGTTCTCCTTATTGGTATAGTATGCG 58.396 38.462 0.00 0.00 37.07 4.73
4843 5532 7.450634 AGTTCTCCTTATTGGTATAGTATGCGA 59.549 37.037 0.00 0.00 37.07 5.10
4844 5533 7.956328 TCTCCTTATTGGTATAGTATGCGAT 57.044 36.000 0.00 0.00 37.07 4.58
4845 5534 7.997482 TCTCCTTATTGGTATAGTATGCGATC 58.003 38.462 0.00 0.00 37.07 3.69
4846 5535 7.834681 TCTCCTTATTGGTATAGTATGCGATCT 59.165 37.037 0.00 0.00 37.07 2.75
4847 5536 8.362464 TCCTTATTGGTATAGTATGCGATCTT 57.638 34.615 0.00 0.00 37.07 2.40
4848 5537 8.812972 TCCTTATTGGTATAGTATGCGATCTTT 58.187 33.333 0.00 0.00 37.07 2.52
4849 5538 9.436957 CCTTATTGGTATAGTATGCGATCTTTT 57.563 33.333 0.00 0.00 0.00 2.27
4852 5541 7.946655 TTGGTATAGTATGCGATCTTTTCTG 57.053 36.000 0.00 0.00 0.00 3.02
4853 5542 7.284919 TGGTATAGTATGCGATCTTTTCTGA 57.715 36.000 0.00 0.00 0.00 3.27
4854 5543 7.722363 TGGTATAGTATGCGATCTTTTCTGAA 58.278 34.615 0.00 0.00 0.00 3.02
4855 5544 7.867909 TGGTATAGTATGCGATCTTTTCTGAAG 59.132 37.037 0.00 0.00 0.00 3.02
4856 5545 8.082852 GGTATAGTATGCGATCTTTTCTGAAGA 58.917 37.037 0.00 0.00 0.00 2.87
4857 5546 9.464714 GTATAGTATGCGATCTTTTCTGAAGAA 57.535 33.333 0.00 0.00 0.00 2.52
4858 5547 8.948631 ATAGTATGCGATCTTTTCTGAAGAAA 57.051 30.769 1.31 1.31 41.77 2.52
4859 5548 7.066374 AGTATGCGATCTTTTCTGAAGAAAC 57.934 36.000 4.99 0.00 43.01 2.78
4867 5556 8.324567 CGATCTTTTCTGAAGAAACTAGTATGC 58.675 37.037 4.99 0.00 43.01 3.14
4901 5590 8.545472 TGGCTGTAACTGTTTATAGGATTACTT 58.455 33.333 0.00 0.00 29.32 2.24
4925 5614 9.298250 CTTCTATAGCCTGTTACTCTATAACCA 57.702 37.037 0.00 0.00 0.00 3.67
4932 5621 7.606839 AGCCTGTTACTCTATAACCAAAAGTTC 59.393 37.037 0.00 0.00 40.05 3.01
4935 5624 9.199982 CTGTTACTCTATAACCAAAAGTTCGAA 57.800 33.333 0.00 0.00 40.05 3.71
4940 5629 9.503399 ACTCTATAACCAAAAGTTCGAAGATTT 57.497 29.630 0.00 0.00 40.05 2.17
4947 5636 9.981114 AACCAAAAGTTCGAAGATTTAATCAAT 57.019 25.926 7.74 0.00 30.99 2.57
4948 5637 9.410556 ACCAAAAGTTCGAAGATTTAATCAATG 57.589 29.630 7.74 0.00 35.04 2.82
4954 5643 9.166173 AGTTCGAAGATTTAATCAATGTGATCA 57.834 29.630 7.74 0.00 33.39 2.92
4955 5644 9.430838 GTTCGAAGATTTAATCAATGTGATCAG 57.569 33.333 7.74 0.00 33.39 2.90
4957 5646 9.038803 TCGAAGATTTAATCAATGTGATCAGAG 57.961 33.333 7.74 0.00 35.76 3.35
4958 5647 9.038803 CGAAGATTTAATCAATGTGATCAGAGA 57.961 33.333 7.74 0.00 35.76 3.10
4967 5656 6.849502 TCAATGTGATCAGAGAAGAAATTGC 58.150 36.000 0.00 0.00 0.00 3.56
4969 5658 7.122204 TCAATGTGATCAGAGAAGAAATTGCAT 59.878 33.333 0.00 0.00 0.00 3.96
4970 5659 8.403236 CAATGTGATCAGAGAAGAAATTGCATA 58.597 33.333 0.00 0.00 0.00 3.14
4971 5660 7.549615 TGTGATCAGAGAAGAAATTGCATAG 57.450 36.000 0.00 0.00 0.00 2.23
4972 5661 6.541278 TGTGATCAGAGAAGAAATTGCATAGG 59.459 38.462 0.00 0.00 0.00 2.57
4973 5662 6.017275 GTGATCAGAGAAGAAATTGCATAGGG 60.017 42.308 0.00 0.00 0.00 3.53
4974 5663 5.441718 TCAGAGAAGAAATTGCATAGGGT 57.558 39.130 0.00 0.00 0.00 4.34
4975 5664 6.560003 TCAGAGAAGAAATTGCATAGGGTA 57.440 37.500 0.00 0.00 0.00 3.69
4976 5665 6.586344 TCAGAGAAGAAATTGCATAGGGTAG 58.414 40.000 0.00 0.00 0.00 3.18
4977 5666 6.384015 TCAGAGAAGAAATTGCATAGGGTAGA 59.616 38.462 0.00 0.00 0.00 2.59
4978 5667 6.481644 CAGAGAAGAAATTGCATAGGGTAGAC 59.518 42.308 0.00 0.00 0.00 2.59
4979 5668 6.156949 AGAGAAGAAATTGCATAGGGTAGACA 59.843 38.462 0.00 0.00 0.00 3.41
4980 5669 6.721318 AGAAGAAATTGCATAGGGTAGACAA 58.279 36.000 0.00 0.00 0.00 3.18
4981 5670 6.599638 AGAAGAAATTGCATAGGGTAGACAAC 59.400 38.462 0.00 0.00 0.00 3.32
4982 5671 6.067217 AGAAATTGCATAGGGTAGACAACT 57.933 37.500 0.00 0.00 0.00 3.16
4983 5672 7.195374 AGAAATTGCATAGGGTAGACAACTA 57.805 36.000 0.00 0.00 0.00 2.24
4984 5673 7.275920 AGAAATTGCATAGGGTAGACAACTAG 58.724 38.462 0.00 0.00 0.00 2.57
4985 5674 4.402056 TTGCATAGGGTAGACAACTAGC 57.598 45.455 0.00 0.00 43.72 3.42
4986 5675 3.643237 TGCATAGGGTAGACAACTAGCT 58.357 45.455 0.00 0.00 43.86 3.32
4987 5676 4.030913 TGCATAGGGTAGACAACTAGCTT 58.969 43.478 0.00 0.00 43.86 3.74
4988 5677 4.469945 TGCATAGGGTAGACAACTAGCTTT 59.530 41.667 0.00 0.00 43.86 3.51
4989 5678 5.659525 TGCATAGGGTAGACAACTAGCTTTA 59.340 40.000 0.00 0.00 43.86 1.85
4990 5679 6.183360 TGCATAGGGTAGACAACTAGCTTTAG 60.183 42.308 0.00 0.00 43.86 1.85
4991 5680 6.040616 GCATAGGGTAGACAACTAGCTTTAGA 59.959 42.308 0.00 0.00 43.86 2.10
4992 5681 7.653647 CATAGGGTAGACAACTAGCTTTAGAG 58.346 42.308 0.00 0.00 43.86 2.43
4993 5682 5.581975 AGGGTAGACAACTAGCTTTAGAGT 58.418 41.667 0.00 0.00 43.86 3.24
4994 5683 6.729428 AGGGTAGACAACTAGCTTTAGAGTA 58.271 40.000 0.00 0.00 43.86 2.59
4995 5684 6.602803 AGGGTAGACAACTAGCTTTAGAGTAC 59.397 42.308 0.00 0.00 43.86 2.73
4996 5685 6.376581 GGGTAGACAACTAGCTTTAGAGTACA 59.623 42.308 0.00 0.00 43.86 2.90
4997 5686 7.094032 GGGTAGACAACTAGCTTTAGAGTACAA 60.094 40.741 0.00 0.00 43.86 2.41
4998 5687 8.468399 GGTAGACAACTAGCTTTAGAGTACAAT 58.532 37.037 0.00 0.00 41.95 2.71
5001 5690 9.463902 AGACAACTAGCTTTAGAGTACAATAGA 57.536 33.333 0.00 0.00 0.00 1.98
5002 5691 9.724839 GACAACTAGCTTTAGAGTACAATAGAG 57.275 37.037 0.00 0.00 0.00 2.43
5022 5711 9.553064 AATAGAGTTATCATGATGTTGAAGGTC 57.447 33.333 18.72 4.68 0.00 3.85
5027 5716 9.334947 AGTTATCATGATGTTGAAGGTCAATAG 57.665 33.333 18.72 0.00 38.79 1.73
5064 5753 6.380079 AAGAAGAGATATGAAAGGGTGTGT 57.620 37.500 0.00 0.00 0.00 3.72
5065 5754 5.738909 AGAAGAGATATGAAAGGGTGTGTG 58.261 41.667 0.00 0.00 0.00 3.82
5082 5771 2.361230 GCTGCCCTGGTACCAACC 60.361 66.667 17.11 7.56 46.98 3.77
5109 5798 5.468540 TCATGTACATACTATCTGTGCCC 57.531 43.478 8.32 0.00 0.00 5.36
5116 5805 6.747414 ACATACTATCTGTGCCCTTTGATA 57.253 37.500 0.00 0.00 0.00 2.15
5120 5809 4.823989 ACTATCTGTGCCCTTTGATAATGC 59.176 41.667 0.00 0.00 0.00 3.56
5128 5818 3.801293 GCCCTTTGATAATGCAATGGAGC 60.801 47.826 9.72 8.02 42.55 4.70
5140 5830 2.355108 GCAATGGAGCAGTAGGTCTCAA 60.355 50.000 0.00 0.00 41.89 3.02
5155 5845 6.524101 AGGTCTCAAAGCTTACAAAAACAA 57.476 33.333 0.00 0.00 29.11 2.83
5163 5853 9.213799 TCAAAGCTTACAAAAACAAAGAAACAT 57.786 25.926 0.00 0.00 0.00 2.71
5189 5921 9.303116 TGGCAAGTTTTCCTAAATAAATGAGTA 57.697 29.630 0.00 0.00 0.00 2.59
5213 5945 4.935352 AATTTGCCACAGCTGTTTCTTA 57.065 36.364 18.94 3.25 40.80 2.10
5225 5957 8.958043 CACAGCTGTTTCTTAAACTTTGTATTC 58.042 33.333 18.94 0.00 41.90 1.75
5281 6013 7.094205 ACAATATGCTTACCCAACTCTGAAAAG 60.094 37.037 0.00 0.00 0.00 2.27
5284 6016 5.197451 TGCTTACCCAACTCTGAAAAGAAA 58.803 37.500 0.00 0.00 0.00 2.52
5286 6018 6.323739 TGCTTACCCAACTCTGAAAAGAAAAT 59.676 34.615 0.00 0.00 0.00 1.82
5322 6057 1.988107 AGGGAAGCATCAGAAGGTTCA 59.012 47.619 17.04 0.00 43.33 3.18
5414 6149 7.865706 AAGTATTTGTATCTGTTCCCATGAC 57.134 36.000 0.00 0.00 0.00 3.06
5444 6180 0.255890 GCTGCTGGGAATTGGGAGTA 59.744 55.000 0.00 0.00 0.00 2.59
5583 6319 4.764050 TGTCCACTTAACCAGTTCAAGA 57.236 40.909 0.00 0.00 30.92 3.02
5617 6354 3.576550 TGTGCATCTACAGTGTACCTGAA 59.423 43.478 15.59 0.00 44.49 3.02
5627 6364 4.937620 ACAGTGTACCTGAATATGCTGTTG 59.062 41.667 15.59 0.00 44.49 3.33
5684 6421 1.303561 GGGCACATGGCTCTTGTCA 60.304 57.895 5.33 0.00 41.00 3.58
5685 6422 0.895100 GGGCACATGGCTCTTGTCAA 60.895 55.000 5.33 0.00 41.00 3.18
5686 6423 0.242017 GGCACATGGCTCTTGTCAAC 59.758 55.000 0.00 0.00 44.01 3.18
5724 6461 4.565166 CCACGATACGATTTAGCACAGAAA 59.435 41.667 0.00 0.00 0.00 2.52
5725 6462 5.062934 CCACGATACGATTTAGCACAGAAAA 59.937 40.000 0.00 0.00 0.00 2.29
5780 6517 3.683822 GCAATTTTGATGGCCATTTTCGA 59.316 39.130 21.84 5.00 0.00 3.71
5865 6602 1.206849 TGCAGAACGATCATGCTGGTA 59.793 47.619 0.00 0.00 40.62 3.25
5878 6615 2.797786 TGCTGGTATGTAAAACCCCAC 58.202 47.619 0.00 0.00 36.06 4.61
5985 6725 3.733684 CGTGTTTTGTTTCCACCTTCAGG 60.734 47.826 0.00 0.00 42.17 3.86
5998 6738 3.523564 CACCTTCAGGGAGGATAGGAAAA 59.476 47.826 0.00 0.00 39.25 2.29
5999 6739 4.166919 CACCTTCAGGGAGGATAGGAAAAT 59.833 45.833 0.00 0.00 39.25 1.82
6007 6747 7.038017 TCAGGGAGGATAGGAAAATATGATGAC 60.038 40.741 0.00 0.00 0.00 3.06
6013 6753 8.037758 AGGATAGGAAAATATGATGACGATGAC 58.962 37.037 0.00 0.00 0.00 3.06
6014 6754 8.037758 GGATAGGAAAATATGATGACGATGACT 58.962 37.037 0.00 0.00 0.00 3.41
6039 6780 8.238481 TCTTTTGTTTGCAGTCTAAAGTTTTG 57.762 30.769 18.18 0.00 31.89 2.44
6040 6781 6.401955 TTTGTTTGCAGTCTAAAGTTTTGC 57.598 33.333 3.52 3.52 35.42 3.68
6041 6782 5.065704 TGTTTGCAGTCTAAAGTTTTGCA 57.934 34.783 8.30 8.30 42.44 4.08
6045 6786 4.050553 TGCAGTCTAAAGTTTTGCAATGC 58.949 39.130 9.66 3.49 41.34 3.56
6046 6787 3.429881 GCAGTCTAAAGTTTTGCAATGCC 59.570 43.478 1.53 0.00 34.99 4.40
6047 6788 4.619973 CAGTCTAAAGTTTTGCAATGCCA 58.380 39.130 1.53 0.00 0.00 4.92
6048 6789 5.232463 CAGTCTAAAGTTTTGCAATGCCAT 58.768 37.500 1.53 0.00 0.00 4.40
6049 6790 5.119588 CAGTCTAAAGTTTTGCAATGCCATG 59.880 40.000 1.53 0.00 0.00 3.66
6051 6792 5.466393 GTCTAAAGTTTTGCAATGCCATGTT 59.534 36.000 1.53 0.00 0.00 2.71
6052 6793 4.555348 AAAGTTTTGCAATGCCATGTTG 57.445 36.364 1.53 0.00 0.00 3.33
6080 6846 0.939577 GCTTCGACACGCAGTTGAGA 60.940 55.000 0.00 0.00 41.61 3.27
6085 6851 0.667792 GACACGCAGTTGAGAGGACC 60.668 60.000 0.00 0.00 41.61 4.46
6087 6853 1.534235 ACGCAGTTGAGAGGACCCT 60.534 57.895 0.00 0.00 37.78 4.34
6108 6874 3.759086 CTGGATCGATATCTCGGGAAAGA 59.241 47.826 0.00 0.00 45.10 2.52
6127 6893 6.717084 GGAAAGATATCCGAATTTCCAATCCT 59.283 38.462 21.06 0.00 46.49 3.24
6128 6894 7.308830 GGAAAGATATCCGAATTTCCAATCCTG 60.309 40.741 21.06 0.00 46.49 3.86
6132 6898 4.502105 TCCGAATTTCCAATCCTGATGA 57.498 40.909 0.00 0.00 0.00 2.92
6179 6945 2.369860 TCTGGATTTCAGATCCCGATGG 59.630 50.000 2.81 0.00 46.71 3.51
6182 6948 3.324846 TGGATTTCAGATCCCGATGGTAG 59.675 47.826 2.81 0.00 37.40 3.18
6245 7011 1.690219 GCCGTCCTCATCACATCCCT 61.690 60.000 0.00 0.00 0.00 4.20
6269 7035 2.113139 CCTTGCCGTCAAGTGGGT 59.887 61.111 5.37 0.00 46.33 4.51
6302 7068 4.805231 CATCACGTACGGCGGCCA 62.805 66.667 21.06 0.00 46.52 5.36
6329 7095 0.744414 AACCCTGCGAATCACATCCG 60.744 55.000 0.00 0.00 0.00 4.18
6332 7098 0.652592 CCTGCGAATCACATCCGAAC 59.347 55.000 0.00 0.00 0.00 3.95
6339 7105 3.452474 GAATCACATCCGAACTCTCCTG 58.548 50.000 0.00 0.00 0.00 3.86
6350 7116 0.037232 ACTCTCCTGCTTTACCGTGC 60.037 55.000 0.00 0.00 0.00 5.34
6413 7179 0.320421 TCCACGGCTAGTTGCTCAAC 60.320 55.000 4.67 4.67 42.39 3.18
6454 7220 2.427812 CACACAATGGATGCATGGCTAA 59.572 45.455 2.46 0.00 0.00 3.09
6455 7221 2.691526 ACACAATGGATGCATGGCTAAG 59.308 45.455 2.46 0.00 0.00 2.18
6456 7222 2.953648 CACAATGGATGCATGGCTAAGA 59.046 45.455 2.46 0.00 0.00 2.10
6457 7223 3.382227 CACAATGGATGCATGGCTAAGAA 59.618 43.478 2.46 0.00 0.00 2.52
6471 7237 8.178313 GCATGGCTAAGAAAGAACTAAAGTTAG 58.822 37.037 0.00 0.00 38.56 2.34
6472 7238 9.220767 CATGGCTAAGAAAGAACTAAAGTTAGT 57.779 33.333 0.00 0.00 45.43 2.24
6538 7464 2.284952 GCAACAGCAACGCAAAGATTTT 59.715 40.909 0.00 0.00 0.00 1.82
6632 7575 2.835705 CGTCATCGTCCCTCCCTCG 61.836 68.421 0.00 0.00 0.00 4.63
6663 7606 6.253512 GCCAAAAGAAACTTTGTTGTAGACAG 59.746 38.462 0.00 0.00 39.94 3.51
6673 7616 6.828785 ACTTTGTTGTAGACAGGTGAGAAAAT 59.171 34.615 0.00 0.00 39.94 1.82
6691 7634 5.655532 AGAAAATGTGATGCTAAAGCTCCAT 59.344 36.000 3.26 0.00 42.66 3.41
6692 7635 6.830324 AGAAAATGTGATGCTAAAGCTCCATA 59.170 34.615 3.26 0.58 42.66 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.037232 GTCGCAGTGCTAGGTCCTTT 60.037 55.000 14.33 0.00 0.00 3.11
10 11 1.592223 GTCGCAGTGCTAGGTCCTT 59.408 57.895 14.33 0.00 0.00 3.36
12 13 2.184579 GGTCGCAGTGCTAGGTCC 59.815 66.667 14.33 1.24 0.00 4.46
13 14 2.202623 CGGTCGCAGTGCTAGGTC 60.203 66.667 14.33 0.00 0.00 3.85
26 27 1.469423 CCGTCTTTCCTAAGAGCGGTC 60.469 57.143 6.48 6.48 42.96 4.79
30 31 3.596310 ACTTCCGTCTTTCCTAAGAGC 57.404 47.619 0.00 0.00 40.95 4.09
73 74 4.202050 GGTGTTTTGCTCAAACTGATCACT 60.202 41.667 11.76 0.00 44.68 3.41
74 75 4.044426 GGTGTTTTGCTCAAACTGATCAC 58.956 43.478 11.76 0.00 44.68 3.06
94 95 2.635915 TCTATCCCTTTGACGTTGTGGT 59.364 45.455 0.00 0.00 0.00 4.16
149 157 1.089920 GTTGGCAGCGATGTCTTGAT 58.910 50.000 6.88 0.00 0.00 2.57
168 176 5.580691 TGGCTTATGTTCTTTCTATGTGTCG 59.419 40.000 0.00 0.00 0.00 4.35
194 202 4.019591 ACCAAGGATAAGCGTTTTAGGAGT 60.020 41.667 0.00 0.00 0.00 3.85
200 208 4.149598 AGGAAACCAAGGATAAGCGTTTT 58.850 39.130 0.00 0.00 0.00 2.43
205 213 3.366052 TGGAGGAAACCAAGGATAAGC 57.634 47.619 0.00 0.00 36.96 3.09
243 251 2.286365 TTTCCTCACCTTTGGCGAAT 57.714 45.000 0.00 0.00 0.00 3.34
276 284 1.522580 GGGAAGGAGCTGATGACGC 60.523 63.158 0.00 0.00 0.00 5.19
278 286 1.202746 GGATGGGAAGGAGCTGATGAC 60.203 57.143 0.00 0.00 0.00 3.06
295 303 1.908483 GAAGCAACCGGGAGAGGAT 59.092 57.895 6.32 0.00 34.73 3.24
296 304 2.646175 CGAAGCAACCGGGAGAGGA 61.646 63.158 6.32 0.00 34.73 3.71
298 306 1.738099 CACGAAGCAACCGGGAGAG 60.738 63.158 6.32 0.00 30.90 3.20
366 383 1.202114 TGCATTGCGGAAGAATTGGAC 59.798 47.619 3.84 0.00 0.00 4.02
368 385 1.067706 TGTGCATTGCGGAAGAATTGG 60.068 47.619 3.84 0.00 0.00 3.16
369 386 2.350899 TGTGCATTGCGGAAGAATTG 57.649 45.000 3.84 0.00 0.00 2.32
383 400 4.142293 TGAATAAAACAGTGCACTTGTGCA 60.142 37.500 22.47 22.47 43.22 4.57
384 401 4.207019 GTGAATAAAACAGTGCACTTGTGC 59.793 41.667 18.94 17.73 0.00 4.57
385 402 4.437495 CGTGAATAAAACAGTGCACTTGTG 59.563 41.667 18.94 10.06 0.00 3.33
386 403 4.334203 TCGTGAATAAAACAGTGCACTTGT 59.666 37.500 18.94 15.83 0.00 3.16
387 404 4.843147 TCGTGAATAAAACAGTGCACTTG 58.157 39.130 18.94 15.15 0.00 3.16
388 405 5.238432 TCATCGTGAATAAAACAGTGCACTT 59.762 36.000 18.94 5.14 0.00 3.16
389 406 4.754618 TCATCGTGAATAAAACAGTGCACT 59.245 37.500 15.25 15.25 0.00 4.40
390 407 5.029650 TCATCGTGAATAAAACAGTGCAC 57.970 39.130 9.40 9.40 0.00 4.57
391 408 5.008118 TGTTCATCGTGAATAAAACAGTGCA 59.992 36.000 4.21 0.00 38.79 4.57
392 409 5.339611 GTGTTCATCGTGAATAAAACAGTGC 59.660 40.000 4.21 0.00 38.79 4.40
393 410 6.658831 AGTGTTCATCGTGAATAAAACAGTG 58.341 36.000 4.21 0.00 38.79 3.66
394 411 6.861065 AGTGTTCATCGTGAATAAAACAGT 57.139 33.333 4.21 0.00 38.79 3.55
395 412 8.708742 TCTTAGTGTTCATCGTGAATAAAACAG 58.291 33.333 4.21 0.00 38.79 3.16
401 418 9.087424 CAAGAATCTTAGTGTTCATCGTGAATA 57.913 33.333 0.00 0.00 38.79 1.75
414 431 9.597170 TTCTCATCATCTTCAAGAATCTTAGTG 57.403 33.333 0.00 0.00 0.00 2.74
418 446 8.859236 TTGTTCTCATCATCTTCAAGAATCTT 57.141 30.769 0.00 0.00 0.00 2.40
422 450 6.772233 TGGTTTGTTCTCATCATCTTCAAGAA 59.228 34.615 0.00 0.00 0.00 2.52
424 452 6.564709 TGGTTTGTTCTCATCATCTTCAAG 57.435 37.500 0.00 0.00 0.00 3.02
449 484 2.014857 TCACTCCCTAACTGTCGATCG 58.985 52.381 9.36 9.36 0.00 3.69
451 486 2.379972 CCTCACTCCCTAACTGTCGAT 58.620 52.381 0.00 0.00 0.00 3.59
484 519 3.947834 CTGATCAACATAACAACTCCCCC 59.052 47.826 0.00 0.00 0.00 5.40
485 520 3.947834 CCTGATCAACATAACAACTCCCC 59.052 47.826 0.00 0.00 0.00 4.81
486 521 4.589908 ACCTGATCAACATAACAACTCCC 58.410 43.478 0.00 0.00 0.00 4.30
487 522 5.245531 TGACCTGATCAACATAACAACTCC 58.754 41.667 0.00 0.00 33.02 3.85
488 523 6.801539 TTGACCTGATCAACATAACAACTC 57.198 37.500 0.00 0.00 42.62 3.01
506 541 3.006752 TCATTTTGAGGTGCCATTTGACC 59.993 43.478 0.00 0.00 0.00 4.02
526 561 7.392393 TCGAATCGGTATCTATATTTGGAGTCA 59.608 37.037 1.76 0.00 0.00 3.41
587 624 8.336235 AGGACCTGATATAAATTCCACAGAAAA 58.664 33.333 0.00 0.00 35.09 2.29
588 625 7.872138 AGGACCTGATATAAATTCCACAGAAA 58.128 34.615 0.00 0.00 35.09 2.52
591 628 7.072263 AGAGGACCTGATATAAATTCCACAG 57.928 40.000 0.00 0.00 0.00 3.66
592 629 7.451731 AAGAGGACCTGATATAAATTCCACA 57.548 36.000 0.00 0.00 0.00 4.17
593 630 8.753497 AAAAGAGGACCTGATATAAATTCCAC 57.247 34.615 0.00 0.00 0.00 4.02
624 662 6.434340 GTGTCACCTATCTTTTGGAAATTCCT 59.566 38.462 13.78 0.00 37.46 3.36
628 666 7.505585 TCAAAGTGTCACCTATCTTTTGGAAAT 59.494 33.333 11.18 0.00 0.00 2.17
640 678 7.581213 AATCAAACATTCAAAGTGTCACCTA 57.419 32.000 0.00 0.00 0.00 3.08
641 679 6.469782 AATCAAACATTCAAAGTGTCACCT 57.530 33.333 0.00 0.00 0.00 4.00
642 680 7.064490 ACAAAATCAAACATTCAAAGTGTCACC 59.936 33.333 0.00 0.00 0.00 4.02
643 681 7.962917 ACAAAATCAAACATTCAAAGTGTCAC 58.037 30.769 0.00 0.00 0.00 3.67
673 728 1.737735 GCCGCCTTCCAATGCAAAC 60.738 57.895 0.00 0.00 0.00 2.93
675 730 3.746889 CGCCGCCTTCCAATGCAA 61.747 61.111 0.00 0.00 0.00 4.08
679 734 2.040544 CACTTCGCCGCCTTCCAAT 61.041 57.895 0.00 0.00 0.00 3.16
696 751 4.087892 GCTTCTGCCTCTCGCCCA 62.088 66.667 0.00 0.00 36.24 5.36
898 965 2.612251 GAGAGGGAGAGGGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
899 966 2.612251 GGAGAGGGAGAGGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
900 967 3.430497 CGGAGAGGGAGAGGGGGA 61.430 72.222 0.00 0.00 0.00 4.81
921 988 4.862823 GAGAGGGGGAGGGGACGG 62.863 77.778 0.00 0.00 0.00 4.79
922 989 4.862823 GGAGAGGGGGAGGGGACG 62.863 77.778 0.00 0.00 0.00 4.79
923 990 4.500826 GGGAGAGGGGGAGGGGAC 62.501 77.778 0.00 0.00 0.00 4.46
924 991 4.761304 AGGGAGAGGGGGAGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
925 992 4.179599 GAGGGAGAGGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
926 993 3.039526 AGAGGGAGAGGGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
927 994 2.612251 GAGAGGGAGAGGGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
928 995 2.612251 GGAGAGGGAGAGGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
929 996 3.430497 CGGAGAGGGAGAGGGGGA 61.430 72.222 0.00 0.00 0.00 4.81
1075 1142 2.672714 CGTGAACGAGACCTTGATTGA 58.327 47.619 0.00 0.00 43.02 2.57
1117 1196 2.359975 CCGTCAAACAGGGGGAGC 60.360 66.667 0.00 0.00 0.00 4.70
1132 1261 0.739813 GGAGTTCGACATGGGTTCCG 60.740 60.000 0.00 0.00 0.00 4.30
1143 1272 3.120060 GCTGTAAGTACTTCGGAGTTCGA 60.120 47.826 12.39 0.00 40.96 3.71
1146 1275 2.094854 CGGCTGTAAGTACTTCGGAGTT 60.095 50.000 12.39 0.00 37.33 3.01
1148 1277 1.202268 CCGGCTGTAAGTACTTCGGAG 60.202 57.143 21.89 13.25 36.57 4.63
1149 1278 0.813184 CCGGCTGTAAGTACTTCGGA 59.187 55.000 21.89 0.00 36.57 4.55
1150 1279 0.813184 TCCGGCTGTAAGTACTTCGG 59.187 55.000 20.88 20.88 35.30 4.30
1151 1280 1.471684 AGTCCGGCTGTAAGTACTTCG 59.528 52.381 12.39 8.97 35.30 3.79
1152 1281 2.877335 CAGTCCGGCTGTAAGTACTTC 58.123 52.381 12.39 4.83 40.27 3.01
1164 1293 2.556287 CGAAAGCAACAGTCCGGC 59.444 61.111 0.00 0.00 0.00 6.13
1179 1308 4.980805 AGCCAACTTTCGCCGCGA 62.981 61.111 12.39 12.39 0.00 5.87
1261 1393 4.059511 TCAATCAAGCGGTTAAAGAACGA 58.940 39.130 0.00 0.00 36.32 3.85
1293 1425 2.481471 GGCTGTTAGAATGGGCGGC 61.481 63.158 0.00 0.00 0.00 6.53
1296 1428 1.455773 GGGGGCTGTTAGAATGGGC 60.456 63.158 0.00 0.00 0.00 5.36
1306 1438 1.694169 ATTCAGGATCGGGGGCTGT 60.694 57.895 0.00 0.00 0.00 4.40
1312 1444 2.401583 TGAACACATTCAGGATCGGG 57.598 50.000 0.00 0.00 40.01 5.14
1327 1459 5.221126 GGCCTTGATTCAGGATAACATGAAC 60.221 44.000 1.99 0.00 46.72 3.18
1346 1478 1.628846 ACACGAACCAATCTAGGCCTT 59.371 47.619 12.58 0.00 0.00 4.35
1350 1482 5.880054 AAATCAACACGAACCAATCTAGG 57.120 39.130 0.00 0.00 0.00 3.02
1366 1498 7.466746 AACTGCTAATTTCTGGCTAAATCAA 57.533 32.000 0.00 0.00 0.00 2.57
1398 1530 0.609406 GGCTCTCTGTTTGAACCCCC 60.609 60.000 0.00 0.00 0.00 5.40
1399 1531 0.402121 AGGCTCTCTGTTTGAACCCC 59.598 55.000 0.00 0.00 0.00 4.95
1400 1532 1.528129 CAGGCTCTCTGTTTGAACCC 58.472 55.000 0.00 0.00 38.64 4.11
1401 1533 1.202818 ACCAGGCTCTCTGTTTGAACC 60.203 52.381 0.00 0.00 41.83 3.62
1411 1543 2.568623 TTCAGGAAAACCAGGCTCTC 57.431 50.000 0.00 0.00 0.00 3.20
1490 1637 3.565902 AGTTTTAGTTGCAAGAGTGAGCC 59.434 43.478 0.00 0.00 0.00 4.70
1492 1639 4.508124 ACGAGTTTTAGTTGCAAGAGTGAG 59.492 41.667 0.00 0.00 0.00 3.51
1493 1640 4.270084 CACGAGTTTTAGTTGCAAGAGTGA 59.730 41.667 0.00 0.00 0.00 3.41
1496 1643 3.002246 TGCACGAGTTTTAGTTGCAAGAG 59.998 43.478 0.00 0.00 0.00 2.85
1497 1644 2.939756 TGCACGAGTTTTAGTTGCAAGA 59.060 40.909 0.00 0.00 0.00 3.02
1498 1645 3.035942 GTGCACGAGTTTTAGTTGCAAG 58.964 45.455 0.00 0.00 32.46 4.01
1499 1646 2.223386 GGTGCACGAGTTTTAGTTGCAA 60.223 45.455 11.45 0.00 32.46 4.08
1516 1679 0.322187 AGGTGGGACATTTACGGTGC 60.322 55.000 0.00 0.00 44.52 5.01
1523 1686 3.814504 AGATCAACAGGTGGGACATTT 57.185 42.857 0.00 0.00 44.52 2.32
1529 1692 3.493350 CGGAGAATAGATCAACAGGTGGG 60.493 52.174 0.00 0.00 0.00 4.61
1530 1693 3.384789 TCGGAGAATAGATCAACAGGTGG 59.615 47.826 0.00 0.00 0.00 4.61
1532 1695 8.690884 CATATATCGGAGAATAGATCAACAGGT 58.309 37.037 0.00 0.00 43.58 4.00
1547 1710 0.807667 GCCTGCGCCATATATCGGAG 60.808 60.000 4.18 7.96 42.51 4.63
1550 1713 1.413767 GACGCCTGCGCCATATATCG 61.414 60.000 12.03 1.15 44.19 2.92
1593 1760 2.103771 GCTCTGATGGATGGTAAGCTGA 59.896 50.000 0.00 0.00 0.00 4.26
1624 1791 1.583054 ACAAGAAGACAACTCACGGC 58.417 50.000 0.00 0.00 0.00 5.68
1636 1803 5.835257 TGAATGAAAGAAGGCAACAAGAAG 58.165 37.500 0.00 0.00 41.41 2.85
1637 1804 5.737063 GCTGAATGAAAGAAGGCAACAAGAA 60.737 40.000 0.00 0.00 41.41 2.52
1638 1805 4.261741 GCTGAATGAAAGAAGGCAACAAGA 60.262 41.667 0.00 0.00 41.41 3.02
1639 1806 3.985925 GCTGAATGAAAGAAGGCAACAAG 59.014 43.478 0.00 0.00 41.41 3.16
1640 1807 3.638160 AGCTGAATGAAAGAAGGCAACAA 59.362 39.130 0.00 0.00 41.41 2.83
1641 1808 3.225104 AGCTGAATGAAAGAAGGCAACA 58.775 40.909 0.00 0.00 41.41 3.33
1642 1809 3.930634 AGCTGAATGAAAGAAGGCAAC 57.069 42.857 0.00 0.00 0.00 4.17
1643 1810 3.638160 ACAAGCTGAATGAAAGAAGGCAA 59.362 39.130 0.00 0.00 0.00 4.52
1644 1811 3.225104 ACAAGCTGAATGAAAGAAGGCA 58.775 40.909 0.00 0.00 0.00 4.75
1645 1812 3.930634 ACAAGCTGAATGAAAGAAGGC 57.069 42.857 0.00 0.00 0.00 4.35
1646 1813 5.443185 TGAACAAGCTGAATGAAAGAAGG 57.557 39.130 0.00 0.00 0.00 3.46
1701 1879 6.085555 TGTGATCTCAGTCGTACTCTTTTT 57.914 37.500 0.00 0.00 0.00 1.94
1702 1880 5.707242 TGTGATCTCAGTCGTACTCTTTT 57.293 39.130 0.00 0.00 0.00 2.27
1853 2248 4.096984 CAGAAGAAAAGAAGGCACAGTGTT 59.903 41.667 1.61 0.00 0.00 3.32
1854 2249 3.629398 CAGAAGAAAAGAAGGCACAGTGT 59.371 43.478 1.61 0.00 0.00 3.55
1855 2250 3.549625 GCAGAAGAAAAGAAGGCACAGTG 60.550 47.826 0.00 0.00 0.00 3.66
1856 2251 2.620585 GCAGAAGAAAAGAAGGCACAGT 59.379 45.455 0.00 0.00 0.00 3.55
1857 2252 2.620115 TGCAGAAGAAAAGAAGGCACAG 59.380 45.455 0.00 0.00 0.00 3.66
1858 2253 2.653726 TGCAGAAGAAAAGAAGGCACA 58.346 42.857 0.00 0.00 0.00 4.57
1859 2254 3.930634 ATGCAGAAGAAAAGAAGGCAC 57.069 42.857 0.00 0.00 32.04 5.01
1860 2255 6.095440 GGTAATATGCAGAAGAAAAGAAGGCA 59.905 38.462 0.00 0.00 0.00 4.75
1861 2256 6.319911 AGGTAATATGCAGAAGAAAAGAAGGC 59.680 38.462 0.00 0.00 0.00 4.35
1862 2257 7.337942 ACAGGTAATATGCAGAAGAAAAGAAGG 59.662 37.037 0.00 0.00 0.00 3.46
1863 2258 8.273780 ACAGGTAATATGCAGAAGAAAAGAAG 57.726 34.615 0.00 0.00 0.00 2.85
1864 2259 9.733556 TTACAGGTAATATGCAGAAGAAAAGAA 57.266 29.630 0.00 0.00 0.00 2.52
1865 2260 9.162764 GTTACAGGTAATATGCAGAAGAAAAGA 57.837 33.333 0.00 0.00 0.00 2.52
1866 2261 8.946085 TGTTACAGGTAATATGCAGAAGAAAAG 58.054 33.333 0.00 0.00 0.00 2.27
1877 2272 5.428253 AGGCACAGTGTTACAGGTAATATG 58.572 41.667 1.61 0.00 0.00 1.78
2073 2470 5.377478 CTTTGTTTTCTCCCCACTAGAAGT 58.623 41.667 0.00 0.00 34.59 3.01
2090 2487 1.545582 CCATTGATGCCGACCTTTGTT 59.454 47.619 0.00 0.00 0.00 2.83
2325 2745 9.887629 AATATCATCTCTATCGATTGCAATTCT 57.112 29.630 14.33 4.11 0.00 2.40
2595 3017 8.579850 ACAGCTCACTAAAAATCATATGGAAA 57.420 30.769 2.13 0.00 0.00 3.13
2632 3057 6.104665 TCAGAAGTACATTGAAGATCAGCAG 58.895 40.000 0.00 0.00 0.00 4.24
2688 3114 9.480861 TCCTGTTTCAAGAAATATCTCTAGAGA 57.519 33.333 24.36 24.36 35.84 3.10
2691 3117 8.191446 TCGTCCTGTTTCAAGAAATATCTCTAG 58.809 37.037 0.00 0.00 33.77 2.43
2728 3154 5.163893 CCGTACACATAAGCAAACTAGTTGG 60.164 44.000 9.34 7.35 37.73 3.77
2735 3161 5.352643 AGTTTCCGTACACATAAGCAAAC 57.647 39.130 0.00 0.00 0.00 2.93
2929 3606 8.363390 CACCTGATACAGCTTGAGATAAATCTA 58.637 37.037 0.00 0.00 37.25 1.98
3251 3930 7.382898 ACTAAAGAAGATCTTTGTCCTGACTC 58.617 38.462 9.87 0.00 45.45 3.36
3422 4101 8.138074 GCTCCTTATTTCCAATTCATAAAGGTC 58.862 37.037 0.00 0.00 0.00 3.85
3593 4275 9.461312 TTGCAAATTTCTAGGAACTACATGTAT 57.539 29.630 5.91 0.00 41.75 2.29
3601 4283 4.072131 TCGCTTGCAAATTTCTAGGAACT 58.928 39.130 0.00 0.00 46.37 3.01
3623 4305 4.977963 CACAAGCAACGAGTTGATGAAAAT 59.022 37.500 18.93 0.00 42.93 1.82
3680 4362 1.737793 CAACAATGCGTTAGGGGAGAC 59.262 52.381 0.00 0.00 35.52 3.36
3949 4634 3.798202 AGCCGATATCACCACTTTCTTC 58.202 45.455 3.12 0.00 0.00 2.87
3997 4682 8.561738 TGTAATTCTTCTCATTTACTCCAACC 57.438 34.615 0.00 0.00 0.00 3.77
4039 4724 5.105473 GGTGGTACAACTAGCATTAGAGACA 60.105 44.000 0.00 0.00 46.61 3.41
4118 4803 9.783256 ATTTTGCAAGAAATAAGACGGTATTAC 57.217 29.630 0.00 0.00 0.00 1.89
4201 4889 3.507162 TCAAGAATGCCAAACTCCTCA 57.493 42.857 0.00 0.00 0.00 3.86
4280 4968 0.615331 TGAACCTCTCAGCCCATGAC 59.385 55.000 0.00 0.00 33.22 3.06
4515 5203 7.147976 GGTATCAAAGCAAGAAGTTCAACATT 58.852 34.615 5.50 0.00 0.00 2.71
4539 5227 0.895559 GGACCTTTCCAACAGCCTGG 60.896 60.000 0.00 0.00 42.30 4.45
4617 5305 2.069273 CAGGTCAGATCAACAACGGAC 58.931 52.381 0.00 0.00 0.00 4.79
4709 5397 3.437049 AGGAGCTAACAAATTGCGAGAAC 59.563 43.478 0.00 0.00 0.00 3.01
4834 5523 8.035394 AGTTTCTTCAGAAAAGATCGCATACTA 58.965 33.333 3.51 0.00 44.58 1.82
4835 5524 6.876257 AGTTTCTTCAGAAAAGATCGCATACT 59.124 34.615 3.51 0.00 44.58 2.12
4836 5525 7.066374 AGTTTCTTCAGAAAAGATCGCATAC 57.934 36.000 3.51 0.00 44.58 2.39
4837 5526 8.035394 ACTAGTTTCTTCAGAAAAGATCGCATA 58.965 33.333 3.51 0.00 44.58 3.14
4838 5527 6.876257 ACTAGTTTCTTCAGAAAAGATCGCAT 59.124 34.615 3.51 0.00 44.58 4.73
4839 5528 6.223852 ACTAGTTTCTTCAGAAAAGATCGCA 58.776 36.000 3.51 0.00 44.58 5.10
4840 5529 6.713792 ACTAGTTTCTTCAGAAAAGATCGC 57.286 37.500 3.51 0.00 44.58 4.58
4841 5530 8.324567 GCATACTAGTTTCTTCAGAAAAGATCG 58.675 37.037 0.00 0.00 44.58 3.69
4842 5531 8.324567 CGCATACTAGTTTCTTCAGAAAAGATC 58.675 37.037 0.00 0.00 44.58 2.75
4843 5532 8.035394 TCGCATACTAGTTTCTTCAGAAAAGAT 58.965 33.333 0.00 0.00 44.58 2.40
4844 5533 7.375834 TCGCATACTAGTTTCTTCAGAAAAGA 58.624 34.615 0.00 0.00 44.58 2.52
4845 5534 7.582435 TCGCATACTAGTTTCTTCAGAAAAG 57.418 36.000 0.00 2.14 44.58 2.27
4846 5535 8.035394 AGATCGCATACTAGTTTCTTCAGAAAA 58.965 33.333 0.00 0.00 44.58 2.29
4847 5536 7.548097 AGATCGCATACTAGTTTCTTCAGAAA 58.452 34.615 0.00 0.00 41.29 2.52
4848 5537 7.101652 AGATCGCATACTAGTTTCTTCAGAA 57.898 36.000 0.00 0.00 0.00 3.02
4849 5538 6.701145 AGATCGCATACTAGTTTCTTCAGA 57.299 37.500 0.00 0.00 0.00 3.27
4850 5539 7.763172 AAAGATCGCATACTAGTTTCTTCAG 57.237 36.000 0.00 0.00 0.00 3.02
4851 5540 7.064609 CCAAAAGATCGCATACTAGTTTCTTCA 59.935 37.037 0.00 0.00 0.00 3.02
4852 5541 7.402640 CCAAAAGATCGCATACTAGTTTCTTC 58.597 38.462 0.00 0.00 0.00 2.87
4853 5542 6.183360 GCCAAAAGATCGCATACTAGTTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
4854 5543 5.294552 GCCAAAAGATCGCATACTAGTTTCT 59.705 40.000 0.00 0.00 0.00 2.52
4855 5544 5.294552 AGCCAAAAGATCGCATACTAGTTTC 59.705 40.000 0.00 0.00 0.00 2.78
4856 5545 5.065218 CAGCCAAAAGATCGCATACTAGTTT 59.935 40.000 0.00 0.00 0.00 2.66
4857 5546 4.572389 CAGCCAAAAGATCGCATACTAGTT 59.428 41.667 0.00 0.00 0.00 2.24
4858 5547 4.122776 CAGCCAAAAGATCGCATACTAGT 58.877 43.478 0.00 0.00 0.00 2.57
4859 5548 4.122776 ACAGCCAAAAGATCGCATACTAG 58.877 43.478 0.00 0.00 0.00 2.57
4867 5556 4.749245 AACAGTTACAGCCAAAAGATCG 57.251 40.909 0.00 0.00 0.00 3.69
4901 5590 9.650714 TTTGGTTATAGAGTAACAGGCTATAGA 57.349 33.333 3.21 0.00 31.07 1.98
4904 5593 8.769359 ACTTTTGGTTATAGAGTAACAGGCTAT 58.231 33.333 0.00 0.00 0.00 2.97
4909 5598 8.752766 TCGAACTTTTGGTTATAGAGTAACAG 57.247 34.615 1.03 0.00 38.41 3.16
4923 5612 9.410556 ACATTGATTAAATCTTCGAACTTTTGG 57.589 29.630 0.00 0.00 0.00 3.28
4932 5621 9.038803 TCTCTGATCACATTGATTAAATCTTCG 57.961 33.333 0.00 0.00 37.20 3.79
4944 5633 6.617879 TGCAATTTCTTCTCTGATCACATTG 58.382 36.000 0.00 0.00 0.00 2.82
4945 5634 6.829229 TGCAATTTCTTCTCTGATCACATT 57.171 33.333 0.00 0.00 0.00 2.71
4946 5635 7.228906 CCTATGCAATTTCTTCTCTGATCACAT 59.771 37.037 0.00 0.00 0.00 3.21
4947 5636 6.541278 CCTATGCAATTTCTTCTCTGATCACA 59.459 38.462 0.00 0.00 0.00 3.58
4948 5637 6.017275 CCCTATGCAATTTCTTCTCTGATCAC 60.017 42.308 0.00 0.00 0.00 3.06
4950 5639 6.060788 ACCCTATGCAATTTCTTCTCTGATC 58.939 40.000 0.00 0.00 0.00 2.92
4951 5640 6.011122 ACCCTATGCAATTTCTTCTCTGAT 57.989 37.500 0.00 0.00 0.00 2.90
4954 5643 6.156949 TGTCTACCCTATGCAATTTCTTCTCT 59.843 38.462 0.00 0.00 0.00 3.10
4955 5644 6.349300 TGTCTACCCTATGCAATTTCTTCTC 58.651 40.000 0.00 0.00 0.00 2.87
4957 5646 6.599638 AGTTGTCTACCCTATGCAATTTCTTC 59.400 38.462 0.00 0.00 0.00 2.87
4958 5647 6.485171 AGTTGTCTACCCTATGCAATTTCTT 58.515 36.000 0.00 0.00 0.00 2.52
4959 5648 6.067217 AGTTGTCTACCCTATGCAATTTCT 57.933 37.500 0.00 0.00 0.00 2.52
4961 5650 5.823045 GCTAGTTGTCTACCCTATGCAATTT 59.177 40.000 0.00 0.00 0.00 1.82
4963 5652 4.656112 AGCTAGTTGTCTACCCTATGCAAT 59.344 41.667 0.00 0.00 0.00 3.56
4964 5653 4.030913 AGCTAGTTGTCTACCCTATGCAA 58.969 43.478 0.00 0.00 0.00 4.08
4965 5654 3.643237 AGCTAGTTGTCTACCCTATGCA 58.357 45.455 0.00 0.00 0.00 3.96
4966 5655 4.674281 AAGCTAGTTGTCTACCCTATGC 57.326 45.455 0.00 0.00 0.00 3.14
4967 5656 7.285858 ACTCTAAAGCTAGTTGTCTACCCTATG 59.714 40.741 0.00 0.00 0.00 2.23
4969 5658 6.729428 ACTCTAAAGCTAGTTGTCTACCCTA 58.271 40.000 0.00 0.00 0.00 3.53
4970 5659 5.581975 ACTCTAAAGCTAGTTGTCTACCCT 58.418 41.667 0.00 0.00 0.00 4.34
4971 5660 5.918426 ACTCTAAAGCTAGTTGTCTACCC 57.082 43.478 0.00 0.00 0.00 3.69
4972 5661 7.388460 TGTACTCTAAAGCTAGTTGTCTACC 57.612 40.000 0.00 0.00 0.00 3.18
4975 5664 9.463902 TCTATTGTACTCTAAAGCTAGTTGTCT 57.536 33.333 0.00 0.00 0.00 3.41
4976 5665 9.724839 CTCTATTGTACTCTAAAGCTAGTTGTC 57.275 37.037 0.00 0.00 0.00 3.18
4977 5666 9.245481 ACTCTATTGTACTCTAAAGCTAGTTGT 57.755 33.333 0.00 0.00 0.00 3.32
4994 5683 9.334947 CCTTCAACATCATGATAACTCTATTGT 57.665 33.333 8.15 0.00 0.00 2.71
4995 5684 9.334947 ACCTTCAACATCATGATAACTCTATTG 57.665 33.333 8.15 5.16 0.00 1.90
4996 5685 9.553064 GACCTTCAACATCATGATAACTCTATT 57.447 33.333 8.15 0.00 0.00 1.73
4997 5686 8.708378 TGACCTTCAACATCATGATAACTCTAT 58.292 33.333 8.15 0.00 0.00 1.98
4998 5687 8.078060 TGACCTTCAACATCATGATAACTCTA 57.922 34.615 8.15 0.00 0.00 2.43
4999 5688 6.950842 TGACCTTCAACATCATGATAACTCT 58.049 36.000 8.15 0.00 0.00 3.24
5000 5689 7.615582 TTGACCTTCAACATCATGATAACTC 57.384 36.000 8.15 0.00 30.26 3.01
5001 5690 9.334947 CTATTGACCTTCAACATCATGATAACT 57.665 33.333 8.15 0.00 39.45 2.24
5002 5691 9.113838 ACTATTGACCTTCAACATCATGATAAC 57.886 33.333 8.15 0.00 39.45 1.89
5005 5694 7.341030 TCACTATTGACCTTCAACATCATGAT 58.659 34.615 1.18 1.18 39.45 2.45
5040 5729 6.656693 CACACACCCTTTCATATCTCTTCTTT 59.343 38.462 0.00 0.00 0.00 2.52
5041 5730 6.176183 CACACACCCTTTCATATCTCTTCTT 58.824 40.000 0.00 0.00 0.00 2.52
5042 5731 5.738909 CACACACCCTTTCATATCTCTTCT 58.261 41.667 0.00 0.00 0.00 2.85
5048 5737 2.098117 GCAGCACACACCCTTTCATATC 59.902 50.000 0.00 0.00 0.00 1.63
5053 5742 2.564721 GGGCAGCACACACCCTTTC 61.565 63.158 0.00 0.00 40.75 2.62
5054 5743 2.521708 GGGCAGCACACACCCTTT 60.522 61.111 0.00 0.00 40.75 3.11
5064 5753 2.434331 GTTGGTACCAGGGCAGCA 59.566 61.111 15.65 0.00 0.00 4.41
5065 5754 2.361230 GGTTGGTACCAGGGCAGC 60.361 66.667 15.65 6.21 44.36 5.25
5082 5771 8.285394 GGCACAGATAGTATGTACATGAATTTG 58.715 37.037 18.81 14.62 0.00 2.32
5083 5772 7.445402 GGGCACAGATAGTATGTACATGAATTT 59.555 37.037 18.81 1.96 0.00 1.82
5087 5776 5.147767 AGGGCACAGATAGTATGTACATGA 58.852 41.667 18.81 4.11 0.00 3.07
5109 5798 5.258456 ACTGCTCCATTGCATTATCAAAG 57.742 39.130 0.00 0.00 42.48 2.77
5116 5805 2.240667 AGACCTACTGCTCCATTGCATT 59.759 45.455 0.00 0.00 42.48 3.56
5120 5809 3.616956 TTGAGACCTACTGCTCCATTG 57.383 47.619 0.00 0.00 0.00 2.82
5128 5818 6.861065 TTTTGTAAGCTTTGAGACCTACTG 57.139 37.500 3.20 0.00 0.00 2.74
5140 5830 7.413988 GCCATGTTTCTTTGTTTTTGTAAGCTT 60.414 33.333 3.48 3.48 0.00 3.74
5155 5845 6.478512 TTAGGAAAACTTGCCATGTTTCTT 57.521 33.333 8.90 3.46 36.72 2.52
5163 5853 8.189119 ACTCATTTATTTAGGAAAACTTGCCA 57.811 30.769 0.00 0.00 0.00 4.92
5189 5921 5.473066 AGAAACAGCTGTGGCAAATTTAT 57.527 34.783 22.49 3.06 41.70 1.40
5195 5927 3.699038 AGTTTAAGAAACAGCTGTGGCAA 59.301 39.130 22.49 7.77 43.79 4.52
5213 5945 7.120579 TCACAGGATAATGCGAATACAAAGTTT 59.879 33.333 0.00 0.00 0.00 2.66
5225 5957 6.554419 TGAGAATTTTTCACAGGATAATGCG 58.446 36.000 0.00 0.00 0.00 4.73
5281 6013 7.676004 TCCCTGGAAAAATGGTTAAGATTTTC 58.324 34.615 0.00 0.00 39.73 2.29
5284 6016 6.295859 GCTTCCCTGGAAAAATGGTTAAGATT 60.296 38.462 0.00 0.00 33.34 2.40
5286 6018 4.526650 GCTTCCCTGGAAAAATGGTTAAGA 59.473 41.667 0.00 0.00 33.34 2.10
5322 6057 7.618512 TCTGTGTAGCCTAGAATACCTTTAAGT 59.381 37.037 0.00 0.00 0.00 2.24
5414 6149 0.729116 CCCAGCAGCTCGTTACAATG 59.271 55.000 0.00 0.00 0.00 2.82
5444 6180 4.461081 CCTGCGGTATAGAGAGATTTAGCT 59.539 45.833 0.00 0.00 0.00 3.32
5617 6354 6.209192 TGGATCAAGAAAACACAACAGCATAT 59.791 34.615 0.00 0.00 0.00 1.78
5627 6364 3.642705 GGTTGCTGGATCAAGAAAACAC 58.357 45.455 0.29 0.00 0.00 3.32
5684 6421 1.808390 GGCGTCATCGTTAGGCGTT 60.808 57.895 0.00 0.00 42.13 4.84
5685 6422 2.202703 GGCGTCATCGTTAGGCGT 60.203 61.111 0.00 0.00 42.13 5.68
5686 6423 2.202690 TGGCGTCATCGTTAGGCG 60.203 61.111 0.00 0.00 43.01 5.52
5699 6436 1.189446 GTGCTAAATCGTATCGTGGCG 59.811 52.381 0.00 0.00 0.00 5.69
5806 6543 6.310956 GCCGATTGATTTGATTGTTTTCATCA 59.689 34.615 0.00 0.00 0.00 3.07
5865 6602 5.365314 ACAGTTCAATTGTGGGGTTTTACAT 59.635 36.000 5.13 0.00 0.00 2.29
5878 6615 2.692557 TCCACCCACAACAGTTCAATTG 59.307 45.455 0.00 0.00 0.00 2.32
5985 6725 6.936279 TCGTCATCATATTTTCCTATCCTCC 58.064 40.000 0.00 0.00 0.00 4.30
5998 6738 8.393366 CAAACAAAAGAGTCATCGTCATCATAT 58.607 33.333 0.00 0.00 0.00 1.78
5999 6739 7.624134 GCAAACAAAAGAGTCATCGTCATCATA 60.624 37.037 0.00 0.00 0.00 2.15
6007 6747 4.024556 AGACTGCAAACAAAAGAGTCATCG 60.025 41.667 0.00 0.00 36.34 3.84
6013 6753 8.375465 CAAAACTTTAGACTGCAAACAAAAGAG 58.625 33.333 14.62 0.00 0.00 2.85
6014 6754 7.148656 GCAAAACTTTAGACTGCAAACAAAAGA 60.149 33.333 14.62 0.00 33.19 2.52
6040 6781 1.195900 GCAACAAGCAACATGGCATTG 59.804 47.619 0.00 0.00 44.79 2.82
6041 6782 1.515081 GCAACAAGCAACATGGCATT 58.485 45.000 0.00 0.00 44.79 3.56
6043 6784 1.300003 CGCAACAAGCAACATGGCA 60.300 52.632 0.00 0.00 46.13 4.92
6044 6785 2.660612 GCGCAACAAGCAACATGGC 61.661 57.895 0.30 0.00 46.13 4.40
6045 6786 0.598158 AAGCGCAACAAGCAACATGG 60.598 50.000 11.47 0.00 46.13 3.66
6046 6787 0.780002 GAAGCGCAACAAGCAACATG 59.220 50.000 11.47 0.00 46.13 3.21
6047 6788 0.661187 CGAAGCGCAACAAGCAACAT 60.661 50.000 11.47 0.00 46.13 2.71
6048 6789 1.298264 CGAAGCGCAACAAGCAACA 60.298 52.632 11.47 0.00 46.13 3.33
6049 6790 1.010125 TCGAAGCGCAACAAGCAAC 60.010 52.632 11.47 0.00 46.13 4.17
6051 6792 2.176926 TGTCGAAGCGCAACAAGCA 61.177 52.632 11.47 0.00 46.13 3.91
6052 6793 1.722507 GTGTCGAAGCGCAACAAGC 60.723 57.895 11.47 0.00 40.87 4.01
6053 6794 1.437089 CGTGTCGAAGCGCAACAAG 60.437 57.895 11.47 6.97 0.00 3.16
6072 6838 1.484240 GATCCAGGGTCCTCTCAACTG 59.516 57.143 0.00 0.00 0.00 3.16
6080 6846 2.619332 CGAGATATCGATCCAGGGTCCT 60.619 54.545 2.99 0.00 31.81 3.85
6085 6851 2.130272 TCCCGAGATATCGATCCAGG 57.870 55.000 12.11 3.37 31.81 4.45
6087 6853 3.763057 TCTTTCCCGAGATATCGATCCA 58.237 45.455 12.11 0.00 31.81 3.41
6108 6874 6.782986 TCATCAGGATTGGAAATTCGGATAT 58.217 36.000 0.00 0.00 0.00 1.63
6113 6879 7.677454 TCATATCATCAGGATTGGAAATTCG 57.323 36.000 0.00 0.00 37.44 3.34
6132 6898 9.927081 AACACCTTTCCTGAATTTCTATCATAT 57.073 29.630 0.00 0.00 0.00 1.78
6141 6907 4.803452 TCCAGAACACCTTTCCTGAATTT 58.197 39.130 0.00 0.00 0.00 1.82
6174 6940 2.069273 GCATCCGAATTCCTACCATCG 58.931 52.381 0.00 0.00 35.19 3.84
6222 6988 1.604147 ATGTGATGAGGACGGCGACA 61.604 55.000 16.62 4.84 0.00 4.35
6245 7011 1.152860 TTGACGGCAAGGCAGGAAA 60.153 52.632 0.00 0.00 40.28 3.13
6302 7068 2.238646 TGATTCGCAGGGTTATCTTGGT 59.761 45.455 0.00 0.00 0.00 3.67
6329 7095 2.338500 CACGGTAAAGCAGGAGAGTTC 58.662 52.381 0.00 0.00 0.00 3.01
6332 7098 0.741221 GGCACGGTAAAGCAGGAGAG 60.741 60.000 0.00 0.00 0.00 3.20
6339 7105 1.130561 GAACAGATGGCACGGTAAAGC 59.869 52.381 0.00 0.00 0.00 3.51
6350 7116 1.273606 AGTCACGGTCAGAACAGATGG 59.726 52.381 0.00 0.00 0.00 3.51
6556 7482 7.411486 TGGACCTAGTTGAAATTTTTGTTGA 57.589 32.000 0.00 0.00 0.00 3.18
6557 7483 7.925483 TCATGGACCTAGTTGAAATTTTTGTTG 59.075 33.333 0.00 0.00 0.00 3.33
6558 7484 8.017418 TCATGGACCTAGTTGAAATTTTTGTT 57.983 30.769 0.00 0.00 0.00 2.83
6559 7485 7.595819 TCATGGACCTAGTTGAAATTTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
6560 7486 9.143631 GATTCATGGACCTAGTTGAAATTTTTG 57.856 33.333 0.00 0.00 32.35 2.44
6561 7487 8.869109 TGATTCATGGACCTAGTTGAAATTTTT 58.131 29.630 0.00 0.00 32.35 1.94
6562 7488 8.306761 GTGATTCATGGACCTAGTTGAAATTTT 58.693 33.333 0.00 0.00 32.35 1.82
6563 7489 7.093771 GGTGATTCATGGACCTAGTTGAAATTT 60.094 37.037 0.00 0.00 32.35 1.82
6564 7490 6.378280 GGTGATTCATGGACCTAGTTGAAATT 59.622 38.462 0.00 0.00 32.35 1.82
6565 7491 5.888161 GGTGATTCATGGACCTAGTTGAAAT 59.112 40.000 0.00 0.00 32.35 2.17
6566 7492 5.014123 AGGTGATTCATGGACCTAGTTGAAA 59.986 40.000 0.00 0.00 38.38 2.69
6567 7493 4.536090 AGGTGATTCATGGACCTAGTTGAA 59.464 41.667 0.00 0.00 38.38 2.69
6568 7494 4.104086 AGGTGATTCATGGACCTAGTTGA 58.896 43.478 0.00 0.00 38.38 3.18
6613 7556 1.453379 GAGGGAGGGACGATGACGA 60.453 63.158 0.00 0.00 42.66 4.20
6614 7557 2.835705 CGAGGGAGGGACGATGACG 61.836 68.421 0.00 0.00 45.75 4.35
6632 7575 3.181490 ACAAAGTTTCTTTTGGCTCCGAC 60.181 43.478 3.85 0.00 41.29 4.79
6663 7606 5.098211 GCTTTAGCATCACATTTTCTCACC 58.902 41.667 0.00 0.00 41.59 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.