Multiple sequence alignment - TraesCS7B01G378600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G378600 chr7B 100.000 3407 0 0 1 3407 643129217 643125811 0.000000e+00 6292.0
1 TraesCS7B01G378600 chr7A 93.740 3163 148 31 270 3407 626955408 626958545 0.000000e+00 4698.0
2 TraesCS7B01G378600 chr7A 97.390 1073 28 0 1338 2410 670889856 670888784 0.000000e+00 1827.0
3 TraesCS7B01G378600 chr7A 90.809 1360 77 26 3 1342 670905490 670904159 0.000000e+00 1775.0
4 TraesCS7B01G378600 chr7A 91.760 267 15 4 7 268 626955060 626955324 6.950000e-97 364.0
5 TraesCS7B01G378600 chr7A 100.000 31 0 0 7 37 670905565 670905535 1.320000e-04 58.4
6 TraesCS7B01G378600 chr2A 85.430 1661 202 28 794 2430 19124831 19126475 0.000000e+00 1690.0
7 TraesCS7B01G378600 chr2A 81.129 1240 205 22 1171 2393 19170157 19171384 0.000000e+00 966.0
8 TraesCS7B01G378600 chr2D 85.776 1624 196 25 794 2398 17830197 17831804 0.000000e+00 1687.0
9 TraesCS7B01G378600 chr2D 84.810 1659 212 28 794 2430 17954809 17956449 0.000000e+00 1631.0
10 TraesCS7B01G378600 chr2D 81.108 1011 163 24 1171 2165 18185835 18186833 0.000000e+00 784.0
11 TraesCS7B01G378600 chr2B 83.323 1655 235 32 794 2430 508737368 508738999 0.000000e+00 1489.0
12 TraesCS7B01G378600 chr6D 83.395 1084 150 23 1340 2408 395370786 395369718 0.000000e+00 977.0
13 TraesCS7B01G378600 chr6D 92.023 351 28 0 997 1347 395371488 395371138 8.490000e-136 494.0
14 TraesCS7B01G378600 chr6D 92.683 205 10 2 794 998 395374868 395374669 1.200000e-74 291.0
15 TraesCS7B01G378600 chr5A 87.387 333 37 5 1 332 570133280 570132952 8.920000e-101 377.0
16 TraesCS7B01G378600 chr3B 87.651 332 26 10 3 332 43340231 43340549 4.150000e-99 372.0
17 TraesCS7B01G378600 chr3A 88.119 303 24 8 31 332 574312218 574312509 1.950000e-92 350.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G378600 chr7B 643125811 643129217 3406 True 6292.000000 6292 100.0000 1 3407 1 chr7B.!!$R1 3406
1 TraesCS7B01G378600 chr7A 626955060 626958545 3485 False 2531.000000 4698 92.7500 7 3407 2 chr7A.!!$F1 3400
2 TraesCS7B01G378600 chr7A 670888784 670889856 1072 True 1827.000000 1827 97.3900 1338 2410 1 chr7A.!!$R1 1072
3 TraesCS7B01G378600 chr7A 670904159 670905565 1406 True 916.700000 1775 95.4045 3 1342 2 chr7A.!!$R2 1339
4 TraesCS7B01G378600 chr2A 19124831 19126475 1644 False 1690.000000 1690 85.4300 794 2430 1 chr2A.!!$F1 1636
5 TraesCS7B01G378600 chr2A 19170157 19171384 1227 False 966.000000 966 81.1290 1171 2393 1 chr2A.!!$F2 1222
6 TraesCS7B01G378600 chr2D 17830197 17831804 1607 False 1687.000000 1687 85.7760 794 2398 1 chr2D.!!$F1 1604
7 TraesCS7B01G378600 chr2D 17954809 17956449 1640 False 1631.000000 1631 84.8100 794 2430 1 chr2D.!!$F2 1636
8 TraesCS7B01G378600 chr2D 18185835 18186833 998 False 784.000000 784 81.1080 1171 2165 1 chr2D.!!$F3 994
9 TraesCS7B01G378600 chr2B 508737368 508738999 1631 False 1489.000000 1489 83.3230 794 2430 1 chr2B.!!$F1 1636
10 TraesCS7B01G378600 chr6D 395369718 395374868 5150 True 587.333333 977 89.3670 794 2408 3 chr6D.!!$R1 1614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 737 0.320697 AAAGACTACACCGCTCCACC 59.679 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2537 6314 0.109226 ACTGGTTCGAAGCTAGTCGC 60.109 55.0 26.05 0.0 40.88 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 206 5.587443 CCTTAGATCATTGCATGTGACTGAA 59.413 40.000 4.62 0.15 0.00 3.02
219 298 8.174422 CCACTGTAAACCAAAAATTGAACAAAG 58.826 33.333 0.00 0.00 0.00 2.77
222 301 9.919348 CTGTAAACCAAAAATTGAACAAAGATG 57.081 29.630 0.00 0.00 0.00 2.90
268 429 6.421377 TTTTATCGATGTTCATGTCCACTG 57.579 37.500 8.54 0.00 0.00 3.66
309 470 7.489113 GTGAATTTTCCTGGTTTATGCATACTG 59.511 37.037 5.74 0.00 0.00 2.74
311 472 8.588290 AATTTTCCTGGTTTATGCATACTGTA 57.412 30.769 5.74 0.00 0.00 2.74
439 603 1.002868 CAGGGGCCTGTGAGAACAG 60.003 63.158 0.84 0.00 39.10 3.16
501 683 5.900865 AAAAACCAGTACCGAAGTTCAAA 57.099 34.783 3.32 0.00 0.00 2.69
502 684 5.900865 AAAACCAGTACCGAAGTTCAAAA 57.099 34.783 3.32 0.00 0.00 2.44
503 685 5.900865 AAACCAGTACCGAAGTTCAAAAA 57.099 34.783 3.32 0.00 0.00 1.94
546 735 2.922740 AAAAAGACTACACCGCTCCA 57.077 45.000 0.00 0.00 0.00 3.86
547 736 2.165319 AAAAGACTACACCGCTCCAC 57.835 50.000 0.00 0.00 0.00 4.02
548 737 0.320697 AAAGACTACACCGCTCCACC 59.679 55.000 0.00 0.00 0.00 4.61
549 738 1.874345 AAGACTACACCGCTCCACCG 61.874 60.000 0.00 0.00 0.00 4.94
550 739 3.984200 GACTACACCGCTCCACCGC 62.984 68.421 0.00 0.00 0.00 5.68
622 825 1.708027 GGTTCGAATCGCCGTCTTG 59.292 57.895 0.00 0.00 0.00 3.02
665 870 3.382832 CTCCCCTTGTCGTCGGCT 61.383 66.667 0.00 0.00 0.00 5.52
1028 4425 2.018542 TGTAGCGTTGCCAGGATAAC 57.981 50.000 0.00 0.00 0.00 1.89
1033 4430 2.394604 GTTGCCAGGATAACGAGCC 58.605 57.895 0.00 0.00 0.00 4.70
1050 4447 1.419387 AGCCTAGGGAAGCTTGCTATG 59.581 52.381 18.04 7.64 35.22 2.23
1059 4456 1.745115 GCTTGCTATGCACCGGACA 60.745 57.895 9.46 6.39 38.71 4.02
1074 4471 1.401552 CGGACATATTTGTGCACCCTG 59.598 52.381 15.69 7.00 43.81 4.45
1111 4508 3.350833 CCAAAGATGCTAGGCTTCACTT 58.649 45.455 0.00 0.00 35.57 3.16
1470 5233 0.325203 TGATCGGGTCCTCACATGGA 60.325 55.000 0.00 0.00 0.00 3.41
1654 5417 1.677576 ACGATGGTTATAACTCGCCGA 59.322 47.619 20.85 0.00 32.02 5.54
1948 5714 5.865977 AATTATGGGGGCATCTGAGAATA 57.134 39.130 0.00 0.00 0.00 1.75
2016 5782 5.587844 TCTGCTGCTTATTTGGAGAATCTTC 59.412 40.000 0.00 0.00 33.73 2.87
2117 5888 2.888414 TGGTGGCAAGTAAACTTAAGGC 59.112 45.455 7.53 0.00 34.28 4.35
2399 6173 0.034089 AACTTGGCATCAGTAGGGGC 60.034 55.000 0.00 0.00 0.00 5.80
2414 6188 1.918957 AGGGGCAGCTTGAATAAGAGT 59.081 47.619 0.00 0.00 35.92 3.24
2476 6253 6.115448 AGGTTATTGCAGATACATAGGGAC 57.885 41.667 0.00 0.00 0.00 4.46
2477 6254 5.013183 AGGTTATTGCAGATACATAGGGACC 59.987 44.000 0.00 0.00 0.00 4.46
2479 6256 6.296026 GTTATTGCAGATACATAGGGACCAA 58.704 40.000 0.00 0.00 0.00 3.67
2492 6269 1.090052 GGACCAATAGGACTGTGCGC 61.090 60.000 0.00 0.00 38.69 6.09
2537 6314 6.431198 AATAATGCCCTTAGTTTGTACACG 57.569 37.500 0.00 0.00 0.00 4.49
2551 6328 0.798159 TACACGCGACTAGCTTCGAA 59.202 50.000 15.93 0.00 45.59 3.71
2579 6356 9.897744 CAGTTTACTTTGAATAAAGAGATTGCA 57.102 29.630 6.77 0.00 44.87 4.08
2620 6397 7.644490 TCATGTTGTTTACTCAATGTACCAAC 58.356 34.615 0.00 0.00 40.26 3.77
2682 6459 4.949856 GGAATACCAAATTGCTCTCTCCAA 59.050 41.667 0.00 0.00 35.97 3.53
2686 6463 5.397142 ACCAAATTGCTCTCTCCAATTTC 57.603 39.130 8.61 0.00 45.83 2.17
2689 6466 6.042437 ACCAAATTGCTCTCTCCAATTTCTTT 59.958 34.615 8.61 0.00 45.83 2.52
2690 6467 6.932960 CCAAATTGCTCTCTCCAATTTCTTTT 59.067 34.615 8.61 0.00 45.83 2.27
2691 6468 7.443272 CCAAATTGCTCTCTCCAATTTCTTTTT 59.557 33.333 8.61 0.00 45.83 1.94
2751 6528 0.893270 CTGGGGCGGAATCAACAACA 60.893 55.000 0.00 0.00 0.00 3.33
2765 6542 7.011295 GGAATCAACAACAAAATCTTGCTGAAA 59.989 33.333 0.00 0.00 35.84 2.69
2766 6543 6.645700 TCAACAACAAAATCTTGCTGAAAC 57.354 33.333 0.00 0.00 35.84 2.78
2771 6548 6.532657 ACAACAAAATCTTGCTGAAACAGAAG 59.467 34.615 2.81 4.39 35.84 2.85
2824 6601 3.591196 TTCATGCATACAAACAAGGGC 57.409 42.857 0.00 0.00 0.00 5.19
2832 6609 0.744281 ACAAACAAGGGCAAAGGTCG 59.256 50.000 0.00 0.00 0.00 4.79
2896 6673 8.130671 AGTTGATCATGAAATTTGTTCCAGAT 57.869 30.769 0.00 0.00 0.00 2.90
2899 6676 8.766000 TGATCATGAAATTTGTTCCAGATTTG 57.234 30.769 0.00 0.00 30.18 2.32
2915 6692 5.875359 CCAGATTTGTCTACCACCTAGAAAC 59.125 44.000 0.00 0.00 32.96 2.78
2998 6775 0.969894 GTGACTGGCCACTCTACACT 59.030 55.000 0.00 0.00 34.38 3.55
3045 6822 2.673368 GTCCTGTAGAATGCCGAACAAG 59.327 50.000 0.00 0.00 0.00 3.16
3047 6824 2.673368 CCTGTAGAATGCCGAACAAGAC 59.327 50.000 0.00 0.00 0.00 3.01
3072 6849 0.169009 CTAGTTGCCGCCTCTTTTGC 59.831 55.000 0.00 0.00 0.00 3.68
3075 6852 3.211564 TTGCCGCCTCTTTTGCTGC 62.212 57.895 0.00 0.00 39.12 5.25
3079 6856 1.656441 CGCCTCTTTTGCTGCTTGT 59.344 52.632 0.00 0.00 0.00 3.16
3083 6860 2.223900 GCCTCTTTTGCTGCTTGTCTTT 60.224 45.455 0.00 0.00 0.00 2.52
3089 6866 0.816373 TGCTGCTTGTCTTTGCACAA 59.184 45.000 0.00 0.00 35.20 3.33
3150 6927 9.573133 GGTTTTATGTCAGGAACAAGAAATATG 57.427 33.333 0.00 0.00 42.37 1.78
3169 6946 1.350684 TGGCTATTCACAGGAGCAACA 59.649 47.619 0.00 0.00 37.98 3.33
3170 6947 2.224744 TGGCTATTCACAGGAGCAACAA 60.225 45.455 0.00 0.00 37.98 2.83
3171 6948 2.162408 GGCTATTCACAGGAGCAACAAC 59.838 50.000 0.00 0.00 37.98 3.32
3172 6949 2.813754 GCTATTCACAGGAGCAACAACA 59.186 45.455 0.00 0.00 36.20 3.33
3173 6950 3.120060 GCTATTCACAGGAGCAACAACAG 60.120 47.826 0.00 0.00 36.20 3.16
3174 6951 1.024271 TTCACAGGAGCAACAACAGC 58.976 50.000 0.00 0.00 0.00 4.40
3175 6952 0.107263 TCACAGGAGCAACAACAGCA 60.107 50.000 0.00 0.00 0.00 4.41
3337 7114 3.234630 AAGCTCGCCGCACCAAGTA 62.235 57.895 0.00 0.00 42.61 2.24
3338 7115 3.188786 GCTCGCCGCACCAAGTAG 61.189 66.667 0.00 0.00 38.92 2.57
3340 7117 4.752879 TCGCCGCACCAAGTAGCC 62.753 66.667 0.00 0.00 0.00 3.93
3364 7141 4.883585 CCTACTTGATGCAAATAGGAGCAA 59.116 41.667 8.56 0.00 43.45 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.033831 CGTGTGAATTGATGGCAAAGATAAAC 59.966 38.462 0.00 0.00 37.59 2.01
5 6 3.674138 GCGTGTGAATTGATGGCAAAGAT 60.674 43.478 0.00 0.00 37.59 2.40
6 7 2.351641 GCGTGTGAATTGATGGCAAAGA 60.352 45.455 0.00 0.00 37.59 2.52
9 83 1.246649 AGCGTGTGAATTGATGGCAA 58.753 45.000 0.00 0.00 38.60 4.52
127 206 6.264518 CCAACACAAAGGTAAATACTGAAGGT 59.735 38.462 0.00 0.00 0.00 3.50
137 216 3.383698 TGGGTCCAACACAAAGGTAAA 57.616 42.857 0.00 0.00 0.00 2.01
181 260 3.848272 TTACAGTGGCAAGCAAATAGC 57.152 42.857 0.00 0.00 46.19 2.97
199 278 8.498054 TGCATCTTTGTTCAATTTTTGGTTTA 57.502 26.923 0.00 0.00 0.00 2.01
251 330 1.441738 TGCAGTGGACATGAACATCG 58.558 50.000 0.00 0.00 0.00 3.84
254 333 5.476254 TGAAATAATGCAGTGGACATGAACA 59.524 36.000 0.00 0.00 0.00 3.18
436 600 3.009473 GGCCCATCATACATACATCCTGT 59.991 47.826 0.00 0.00 0.00 4.00
439 603 2.632377 CGGCCCATCATACATACATCC 58.368 52.381 0.00 0.00 0.00 3.51
440 604 2.009774 GCGGCCCATCATACATACATC 58.990 52.381 0.00 0.00 0.00 3.06
504 686 4.360951 TCCTGTCCTTCGGTACATTTTT 57.639 40.909 0.00 0.00 0.00 1.94
505 687 4.360951 TTCCTGTCCTTCGGTACATTTT 57.639 40.909 0.00 0.00 0.00 1.82
506 688 4.360951 TTTCCTGTCCTTCGGTACATTT 57.639 40.909 0.00 0.00 0.00 2.32
507 689 4.360951 TTTTCCTGTCCTTCGGTACATT 57.639 40.909 0.00 0.00 0.00 2.71
508 690 4.360951 TTTTTCCTGTCCTTCGGTACAT 57.639 40.909 0.00 0.00 0.00 2.29
509 691 3.842007 TTTTTCCTGTCCTTCGGTACA 57.158 42.857 0.00 0.00 0.00 2.90
585 774 2.438075 CTGGGAGGAGCAAGCTGC 60.438 66.667 5.35 5.35 45.46 5.25
639 842 2.747855 CAAGGGGAGCTGGTTCGC 60.748 66.667 0.00 0.00 0.00 4.70
683 888 0.606673 GAGGGGATTAATCAGCCGGC 60.607 60.000 21.89 21.89 0.00 6.13
689 894 1.416401 GCGACCAGAGGGGATTAATCA 59.584 52.381 17.07 0.00 41.15 2.57
1028 4425 1.522580 GCAAGCTTCCCTAGGCTCG 60.523 63.158 2.05 0.00 37.87 5.03
1033 4430 2.216898 GTGCATAGCAAGCTTCCCTAG 58.783 52.381 0.00 0.00 41.47 3.02
1050 4447 3.622459 GCACAAATATGTCCGGTGC 57.378 52.632 0.00 0.00 46.53 5.01
1059 4456 4.858850 TGAAGATCAGGGTGCACAAATAT 58.141 39.130 20.43 6.43 0.00 1.28
1074 4471 5.695851 TCTTTGGCAAAGTTCTGAAGATC 57.304 39.130 32.46 0.00 39.52 2.75
1123 4520 3.750130 TGTTCAGCTTTGCAGAATCTCTC 59.250 43.478 1.11 0.00 36.54 3.20
1440 5203 2.762327 GGACCCGATCAAACACCTAGTA 59.238 50.000 0.00 0.00 0.00 1.82
1470 5233 3.390311 TCTCATCAGCAGTTATCAGCCAT 59.610 43.478 0.00 0.00 0.00 4.40
1654 5417 4.037208 CAGGTTGTCAAGAGCAAAGATTGT 59.963 41.667 0.00 0.00 0.00 2.71
1948 5714 0.321564 TACGCACTGCCAGCTGAAAT 60.322 50.000 17.39 0.00 0.00 2.17
2016 5782 4.988540 TCAGGTTCTAAATCATAATCGCCG 59.011 41.667 0.00 0.00 0.00 6.46
2095 5866 3.319689 GCCTTAAGTTTACTTGCCACCAA 59.680 43.478 5.41 0.00 37.40 3.67
2117 5888 2.250188 GGGAACGCAACGAATTGATTG 58.750 47.619 0.00 0.00 38.15 2.67
2399 6173 4.946157 ACCCATCAACTCTTATTCAAGCTG 59.054 41.667 0.00 0.00 0.00 4.24
2469 6246 2.706190 GCACAGTCCTATTGGTCCCTAT 59.294 50.000 0.00 0.00 34.23 2.57
2470 6247 2.116238 GCACAGTCCTATTGGTCCCTA 58.884 52.381 0.00 0.00 34.23 3.53
2476 6253 2.173669 CCGCGCACAGTCCTATTGG 61.174 63.158 8.75 0.00 0.00 3.16
2477 6254 2.813179 GCCGCGCACAGTCCTATTG 61.813 63.158 8.75 0.00 0.00 1.90
2479 6256 4.530857 GGCCGCGCACAGTCCTAT 62.531 66.667 8.75 0.00 0.00 2.57
2492 6269 2.129607 GCTCATTGCAAATAATGGCCG 58.870 47.619 1.71 0.00 42.31 6.13
2537 6314 0.109226 ACTGGTTCGAAGCTAGTCGC 60.109 55.000 26.05 0.00 40.88 5.19
2577 6354 7.224557 ACAACATGAGTAAACAAAGGAAAATGC 59.775 33.333 0.00 0.00 0.00 3.56
2579 6356 9.665719 AAACAACATGAGTAAACAAAGGAAAAT 57.334 25.926 0.00 0.00 0.00 1.82
2615 6392 9.014297 CATTAAAATTGGAGAGAGTTAGTTGGT 57.986 33.333 0.00 0.00 0.00 3.67
2620 6397 9.219603 TGACACATTAAAATTGGAGAGAGTTAG 57.780 33.333 0.00 0.00 0.00 2.34
2751 6528 5.266733 TGCTTCTGTTTCAGCAAGATTTT 57.733 34.783 0.00 0.00 43.14 1.82
2797 6574 7.388500 CCCTTGTTTGTATGCATGAAAATCTTT 59.612 33.333 10.16 0.00 0.00 2.52
2824 6601 7.265673 TCTTCTTCCTTATACATCGACCTTTG 58.734 38.462 0.00 0.00 0.00 2.77
2832 6609 8.841300 GTTGGGAATTCTTCTTCCTTATACATC 58.159 37.037 5.23 0.00 43.59 3.06
2896 6673 6.655930 AGTTTGTTTCTAGGTGGTAGACAAA 58.344 36.000 0.00 0.00 37.51 2.83
2899 6676 8.718734 CAATTAGTTTGTTTCTAGGTGGTAGAC 58.281 37.037 0.00 0.00 37.51 2.59
2915 6692 9.180678 GTTCAACTACATTGGTCAATTAGTTTG 57.819 33.333 17.87 15.18 38.98 2.93
2998 6775 4.456911 AGAATTCTCTCTTGCGCATCAAAA 59.543 37.500 12.75 1.61 33.65 2.44
3028 6805 2.333926 CGTCTTGTTCGGCATTCTACA 58.666 47.619 0.00 0.00 0.00 2.74
3053 6830 0.169009 GCAAAAGAGGCGGCAACTAG 59.831 55.000 13.08 5.48 0.00 2.57
3072 6849 4.093514 CGATATTGTGCAAAGACAAGCAG 58.906 43.478 0.00 0.00 42.14 4.24
3075 6852 4.685169 ACCGATATTGTGCAAAGACAAG 57.315 40.909 0.00 0.00 39.18 3.16
3079 6856 3.689161 CAGGAACCGATATTGTGCAAAGA 59.311 43.478 0.00 0.00 0.00 2.52
3083 6860 2.779755 ACAGGAACCGATATTGTGCA 57.220 45.000 0.00 0.00 0.00 4.57
3089 6866 5.687166 TCCAGTTTTACAGGAACCGATAT 57.313 39.130 0.00 0.00 30.32 1.63
3150 6927 2.113860 TGTTGCTCCTGTGAATAGCC 57.886 50.000 0.00 0.00 35.33 3.93
3169 6946 1.863662 GATGTGCTGCTGCTGCTGTT 61.864 55.000 27.67 14.54 39.81 3.16
3170 6947 2.282251 ATGTGCTGCTGCTGCTGT 60.282 55.556 27.67 13.61 39.81 4.40
3171 6948 0.743345 TAGATGTGCTGCTGCTGCTG 60.743 55.000 27.67 16.73 40.48 4.41
3172 6949 0.180642 ATAGATGTGCTGCTGCTGCT 59.819 50.000 27.67 11.62 40.48 4.24
3173 6950 1.022735 AATAGATGTGCTGCTGCTGC 58.977 50.000 22.51 22.51 40.48 5.25
3174 6951 3.875727 AGTTAATAGATGTGCTGCTGCTG 59.124 43.478 17.00 0.77 40.48 4.41
3175 6952 4.148128 AGTTAATAGATGTGCTGCTGCT 57.852 40.909 17.00 0.00 40.48 4.24
3328 7105 2.297937 AGTAGGGGCTACTTGGTGC 58.702 57.895 0.00 0.00 43.82 5.01
3337 7114 2.834638 ATTTGCATCAAGTAGGGGCT 57.165 45.000 0.00 0.00 0.00 5.19
3338 7115 2.887152 CCTATTTGCATCAAGTAGGGGC 59.113 50.000 15.98 0.00 44.64 5.80
3340 7117 3.817647 GCTCCTATTTGCATCAAGTAGGG 59.182 47.826 20.63 14.87 46.74 3.53
3364 7141 4.324099 GCCTAACCATAGATGATCAGGCAT 60.324 45.833 11.47 0.00 45.31 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.