Multiple sequence alignment - TraesCS7B01G376400

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G376400 chr7B 100.000 6108 0 0 1 6108 641254394 641260501 0.000000e+00 11280.0
1 TraesCS7B01G376400 chr7B 93.495 1199 74 4 4708 5904 641329813 641331009 0.000000e+00 1779.0
2 TraesCS7B01G376400 chr7B 90.199 806 72 7 4556 5357 641325484 641326286 0.000000e+00 1044.0
3 TraesCS7B01G376400 chr7B 88.411 604 55 9 4214 4807 641329217 641329815 0.000000e+00 713.0
4 TraesCS7B01G376400 chr7B 88.930 542 58 2 5365 5905 748331735 748331195 0.000000e+00 667.0
5 TraesCS7B01G376400 chr7B 88.476 538 58 4 5369 5905 104298969 104298435 0.000000e+00 647.0
6 TraesCS7B01G376400 chr7B 88.032 493 41 8 3685 4168 641328730 641329213 8.880000e-158 568.0
7 TraesCS7B01G376400 chr7B 83.124 557 58 16 2838 3373 641327607 641328148 5.540000e-130 475.0
8 TraesCS7B01G376400 chr7B 92.683 205 14 1 5905 6108 715239112 715238908 1.660000e-75 294.0
9 TraesCS7B01G376400 chr7B 95.135 185 8 1 1462 1646 625944686 625944503 2.150000e-74 291.0
10 TraesCS7B01G376400 chr7B 92.553 188 12 1 4350 4535 641325253 641325440 1.010000e-67 268.0
11 TraesCS7B01G376400 chr7B 93.642 173 11 0 3358 3530 641328447 641328619 6.070000e-65 259.0
12 TraesCS7B01G376400 chr7B 96.667 60 2 0 5298 5357 641318049 641318108 3.900000e-17 100.0
13 TraesCS7B01G376400 chr7B 85.567 97 8 4 3590 3685 419032180 419032271 5.040000e-16 97.1
14 TraesCS7B01G376400 chr7D 89.568 1946 97 29 1644 3530 577843860 577845758 0.000000e+00 2372.0
15 TraesCS7B01G376400 chr7D 92.814 1155 70 11 4214 5357 577846735 577847887 0.000000e+00 1661.0
16 TraesCS7B01G376400 chr7D 93.604 813 26 10 630 1426 577843036 577843838 0.000000e+00 1190.0
17 TraesCS7B01G376400 chr7D 94.387 481 22 3 1 476 58611677 58611197 0.000000e+00 734.0
18 TraesCS7B01G376400 chr7D 93.712 493 23 6 1 486 628599026 628599517 0.000000e+00 732.0
19 TraesCS7B01G376400 chr7D 91.171 521 20 15 1 514 530075379 530075880 0.000000e+00 684.0
20 TraesCS7B01G376400 chr7D 90.716 517 23 13 1 510 554153571 554153073 0.000000e+00 665.0
21 TraesCS7B01G376400 chr7D 88.439 519 29 9 3685 4192 577845870 577846368 1.130000e-166 597.0
22 TraesCS7B01G376400 chr7D 90.217 184 17 1 1460 1642 621980575 621980392 7.910000e-59 239.0
23 TraesCS7B01G376400 chr7D 88.312 77 4 4 3602 3678 612444382 612444453 3.030000e-13 87.9
24 TraesCS7B01G376400 chr7D 85.556 90 4 4 3598 3679 588087742 588087654 1.090000e-12 86.1
25 TraesCS7B01G376400 chr7A 89.286 1204 54 27 2384 3526 670005949 670007138 0.000000e+00 1439.0
26 TraesCS7B01G376400 chr7A 89.238 892 50 18 3685 4540 670007268 670008149 0.000000e+00 1074.0
27 TraesCS7B01G376400 chr7A 94.073 523 31 0 4556 5078 670008412 670008934 0.000000e+00 795.0
28 TraesCS7B01G376400 chr7A 86.631 748 44 20 1644 2385 670004890 670005587 0.000000e+00 776.0
29 TraesCS7B01G376400 chr7A 93.319 479 16 4 1000 1462 670004421 670004899 0.000000e+00 693.0
30 TraesCS7B01G376400 chr7A 91.803 366 16 10 633 997 670004022 670004374 1.180000e-136 497.0
31 TraesCS7B01G376400 chr7A 78.738 602 91 22 5334 5906 149029553 149028960 9.670000e-98 368.0
32 TraesCS7B01G376400 chr6B 95.229 524 16 8 1 516 75673096 75672574 0.000000e+00 821.0
33 TraesCS7B01G376400 chr6B 92.683 205 14 1 5905 6108 171217485 171217689 1.660000e-75 294.0
34 TraesCS7B01G376400 chr6B 91.707 205 15 2 5905 6108 77835613 77835816 3.600000e-72 283.0
35 TraesCS7B01G376400 chr6B 89.091 55 4 2 5292 5346 558743734 558743786 3.950000e-07 67.6
36 TraesCS7B01G376400 chr6A 95.960 495 14 6 1 489 139049266 139048772 0.000000e+00 798.0
37 TraesCS7B01G376400 chr3D 94.872 507 21 5 1 503 141346399 141346904 0.000000e+00 787.0
38 TraesCS7B01G376400 chr3D 91.159 509 22 11 1 504 32159672 32159182 0.000000e+00 669.0
39 TraesCS7B01G376400 chr3D 91.124 507 22 11 1 501 213052797 213053286 0.000000e+00 665.0
40 TraesCS7B01G376400 chr3D 85.149 505 57 15 18 510 573991486 573990988 9.140000e-138 501.0
41 TraesCS7B01G376400 chr3D 86.598 97 7 4 3593 3688 110398470 110398379 1.080000e-17 102.0
42 TraesCS7B01G376400 chr3D 86.420 81 5 3 3602 3678 105461132 105461210 3.920000e-12 84.2
43 TraesCS7B01G376400 chr3D 96.154 52 1 1 465 516 135170931 135170881 3.920000e-12 84.2
44 TraesCS7B01G376400 chr3D 79.339 121 20 2 524 643 183142795 183142911 5.080000e-11 80.5
45 TraesCS7B01G376400 chr3D 81.132 106 10 3 3587 3683 6459366 6459470 6.570000e-10 76.8
46 TraesCS7B01G376400 chr4A 94.685 508 24 3 1 506 140719151 140718645 0.000000e+00 785.0
47 TraesCS7B01G376400 chr4A 94.152 513 25 5 1 510 140699110 140698600 0.000000e+00 776.0
48 TraesCS7B01G376400 chr4A 84.615 91 3 3 3602 3683 83770907 83770819 5.080000e-11 80.5
49 TraesCS7B01G376400 chr6D 94.531 512 19 8 1 505 3109690 3109181 0.000000e+00 782.0
50 TraesCS7B01G376400 chr6D 89.366 536 54 3 5371 5905 20134460 20134993 0.000000e+00 671.0
51 TraesCS7B01G376400 chr6D 85.135 518 54 13 1 510 28684742 28684240 5.460000e-140 508.0
52 TraesCS7B01G376400 chr6D 88.636 88 7 3 5256 5342 140086860 140086945 3.010000e-18 104.0
53 TraesCS7B01G376400 chr6D 80.909 110 10 3 3592 3691 157587505 157587397 6.570000e-10 76.8
54 TraesCS7B01G376400 chr6D 90.741 54 3 2 465 516 184474648 184474595 3.050000e-08 71.3
55 TraesCS7B01G376400 chr6D 85.333 75 4 3 3602 3676 462210655 462210722 3.050000e-08 71.3
56 TraesCS7B01G376400 chr6D 100.000 38 0 0 466 503 468552371 468552334 3.050000e-08 71.3
57 TraesCS7B01G376400 chr6D 90.566 53 4 1 465 516 19201403 19201455 1.100000e-07 69.4
58 TraesCS7B01G376400 chr6D 82.022 89 6 2 3599 3678 438275612 438275699 3.950000e-07 67.6
59 TraesCS7B01G376400 chr6D 91.667 48 2 2 467 513 5931694 5931740 1.420000e-06 65.8
60 TraesCS7B01G376400 chr6D 91.667 48 2 2 3599 3645 7460174 7460220 1.420000e-06 65.8
61 TraesCS7B01G376400 chr6D 91.667 48 3 1 3597 3644 370690602 370690556 1.420000e-06 65.8
62 TraesCS7B01G376400 chr6D 91.489 47 3 1 3599 3645 177788381 177788426 5.110000e-06 63.9
63 TraesCS7B01G376400 chr6D 81.319 91 6 5 3602 3683 462762824 462762736 5.110000e-06 63.9
64 TraesCS7B01G376400 chr6D 88.462 52 4 2 466 515 16109594 16109645 1.840000e-05 62.1
65 TraesCS7B01G376400 chr6D 90.000 50 1 4 465 512 456824709 456824662 1.840000e-05 62.1
66 TraesCS7B01G376400 chr5A 94.291 508 26 2 1 505 568808086 568808593 0.000000e+00 774.0
67 TraesCS7B01G376400 chr5A 84.058 69 9 2 576 643 549046973 549047040 1.420000e-06 65.8
68 TraesCS7B01G376400 chr3A 94.929 493 22 3 1 490 748284695 748285187 0.000000e+00 769.0
69 TraesCS7B01G376400 chr3A 81.618 136 17 5 510 643 746127198 746127069 8.370000e-19 106.0
70 TraesCS7B01G376400 chr3A 82.716 81 8 3 3598 3678 435409016 435409090 3.950000e-07 67.6
71 TraesCS7B01G376400 chr3B 93.478 506 30 3 1 503 290143034 290142529 0.000000e+00 749.0
72 TraesCS7B01G376400 chr1A 93.191 514 24 7 1 503 12041650 12042163 0.000000e+00 745.0
73 TraesCS7B01G376400 chr1A 91.379 58 3 2 1 58 96847491 96847436 1.830000e-10 78.7
74 TraesCS7B01G376400 chr1A 90.741 54 2 3 465 515 25809818 25809765 1.100000e-07 69.4
75 TraesCS7B01G376400 chr5D 90.226 532 49 3 5374 5905 220673939 220674467 0.000000e+00 691.0
76 TraesCS7B01G376400 chr5D 90.730 507 22 12 1 501 289066581 289066094 0.000000e+00 652.0
77 TraesCS7B01G376400 chr5D 86.538 416 47 7 1 411 378893896 378893485 3.360000e-122 449.0
78 TraesCS7B01G376400 chr5D 90.511 137 12 1 2312 2448 292681298 292681433 4.860000e-41 180.0
79 TraesCS7B01G376400 chr5D 87.255 102 12 1 331 431 566048269 566048168 1.390000e-21 115.0
80 TraesCS7B01G376400 chr5D 94.340 53 2 1 465 516 178523178 178523126 5.080000e-11 80.5
81 TraesCS7B01G376400 chr5D 81.633 98 6 4 3591 3678 228069680 228069775 3.050000e-08 71.3
82 TraesCS7B01G376400 chr5D 92.157 51 2 2 467 516 554387432 554387481 3.050000e-08 71.3
83 TraesCS7B01G376400 chr5D 82.278 79 7 3 3602 3680 74430274 74430203 1.840000e-05 62.1
84 TraesCS7B01G376400 chr2A 88.745 542 56 5 5365 5905 66767838 66767301 0.000000e+00 658.0
85 TraesCS7B01G376400 chr2A 83.333 294 43 6 1134 1426 125903270 125902982 3.630000e-67 267.0
86 TraesCS7B01G376400 chr2A 90.123 81 6 2 3601 3680 729674189 729674110 3.010000e-18 104.0
87 TraesCS7B01G376400 chr2A 93.220 59 4 0 1545 1603 734735163 734735221 3.030000e-13 87.9
88 TraesCS7B01G376400 chr2A 94.444 36 2 0 4599 4634 735561371 735561406 8.550000e-04 56.5
89 TraesCS7B01G376400 chr2D 89.184 527 54 3 5380 5905 19634757 19634233 0.000000e+00 654.0
90 TraesCS7B01G376400 chr2D 81.311 305 51 6 1131 1434 121706167 121705868 6.120000e-60 243.0
91 TraesCS7B01G376400 chr2D 79.720 143 24 5 509 647 338839000 338839141 1.400000e-16 99.0
92 TraesCS7B01G376400 chr2D 84.615 78 11 1 567 643 621608773 621608850 6.570000e-10 76.8
93 TraesCS7B01G376400 chr2D 81.731 104 6 5 3585 3678 15682884 15682984 2.360000e-09 75.0
94 TraesCS7B01G376400 chr2D 90.000 60 2 4 3588 3645 622871082 622871025 2.360000e-09 75.0
95 TraesCS7B01G376400 chr2D 89.286 56 5 1 3590 3645 468098297 468098351 1.100000e-07 69.4
96 TraesCS7B01G376400 chr2D 94.444 36 2 0 4599 4634 601708728 601708693 8.550000e-04 56.5
97 TraesCS7B01G376400 chr2D 94.444 36 2 0 4599 4634 601963485 601963450 8.550000e-04 56.5
98 TraesCS7B01G376400 chr2D 94.444 36 2 0 4599 4634 602774624 602774659 8.550000e-04 56.5
99 TraesCS7B01G376400 chr1D 88.519 540 58 4 5367 5905 431763558 431764094 0.000000e+00 651.0
100 TraesCS7B01G376400 chr1D 86.559 186 25 0 1458 1643 9667253 9667438 8.030000e-49 206.0
101 TraesCS7B01G376400 chr1D 84.916 179 27 0 1462 1640 391090363 391090185 1.350000e-41 182.0
102 TraesCS7B01G376400 chr1D 83.908 87 4 4 3601 3678 22428270 22428355 2.360000e-09 75.0
103 TraesCS7B01G376400 chr1D 81.373 102 6 5 3587 3679 47644839 47644742 3.050000e-08 71.3
104 TraesCS7B01G376400 chr1D 92.000 50 3 1 3599 3648 114366392 114366344 1.100000e-07 69.4
105 TraesCS7B01G376400 chr1D 92.000 50 3 1 3596 3645 121317006 121317054 1.100000e-07 69.4
106 TraesCS7B01G376400 chr1D 97.368 38 1 0 467 504 116452615 116452652 1.420000e-06 65.8
107 TraesCS7B01G376400 chr4D 91.111 495 21 11 1 489 411349434 411348957 0.000000e+00 649.0
108 TraesCS7B01G376400 chr4D 87.640 89 9 2 5253 5339 483109666 483109754 1.080000e-17 102.0
109 TraesCS7B01G376400 chr4D 92.000 50 2 2 468 515 437938180 437938131 1.100000e-07 69.4
110 TraesCS7B01G376400 chr4D 80.392 102 8 4 3585 3677 34228747 34228845 3.950000e-07 67.6
111 TraesCS7B01G376400 chr4D 89.286 56 3 3 459 511 326476135 326476080 3.950000e-07 67.6
112 TraesCS7B01G376400 chr4D 82.222 90 5 3 3599 3678 479997666 479997578 3.950000e-07 67.6
113 TraesCS7B01G376400 chr4D 93.333 45 2 1 3601 3645 313572417 313572374 1.420000e-06 65.8
114 TraesCS7B01G376400 chr4D 85.938 64 5 2 3617 3678 394487347 394487286 1.420000e-06 65.8
115 TraesCS7B01G376400 chr4D 87.273 55 5 2 3592 3645 509275117 509275170 1.840000e-05 62.1
116 TraesCS7B01G376400 chr5B 88.598 535 58 3 5371 5904 446454667 446455199 0.000000e+00 647.0
117 TraesCS7B01G376400 chr5B 94.146 205 11 1 5905 6108 394222585 394222789 1.650000e-80 311.0
118 TraesCS7B01G376400 chr5B 96.196 184 7 0 1462 1645 470518991 470518808 9.950000e-78 302.0
119 TraesCS7B01G376400 chr5B 91.262 206 16 2 5903 6107 541710851 541710647 4.660000e-71 279.0
120 TraesCS7B01G376400 chr5B 91.111 90 6 2 5253 5340 251577551 251577462 2.990000e-23 121.0
121 TraesCS7B01G376400 chr5B 89.773 88 7 2 5253 5338 185218513 185218426 1.800000e-20 111.0
122 TraesCS7B01G376400 chr5B 87.654 81 6 3 3599 3678 102640542 102640619 2.340000e-14 91.6
123 TraesCS7B01G376400 chr5B 88.312 77 4 2 3602 3678 244748290 244748361 3.030000e-13 87.9
124 TraesCS7B01G376400 chr5B 96.000 50 2 0 5298 5347 123753409 123753360 1.410000e-11 82.4
125 TraesCS7B01G376400 chr5B 83.117 77 9 3 3602 3678 493923058 493923130 3.950000e-07 67.6
126 TraesCS7B01G376400 chr1B 89.784 509 45 7 1 504 45204702 45205208 0.000000e+00 645.0
127 TraesCS7B01G376400 chr1B 92.195 205 15 1 5905 6108 20196248 20196452 7.750000e-74 289.0
128 TraesCS7B01G376400 chr1B 91.803 183 14 1 1462 1644 392839457 392839638 2.830000e-63 254.0
129 TraesCS7B01G376400 chr1B 95.556 90 4 0 1554 1643 644319914 644319825 1.770000e-30 145.0
130 TraesCS7B01G376400 chr1B 93.590 78 5 0 1462 1539 644319981 644319904 3.870000e-22 117.0
131 TraesCS7B01G376400 chr1B 88.764 89 6 3 5250 5336 662552694 662552780 8.370000e-19 106.0
132 TraesCS7B01G376400 chr1B 89.412 85 5 4 5253 5335 662552779 662552697 3.010000e-18 104.0
133 TraesCS7B01G376400 chr1B 84.694 98 7 4 5253 5342 555940488 555940585 2.340000e-14 91.6
134 TraesCS7B01G376400 chr1B 81.818 88 12 3 5264 5349 339719292 339719207 3.050000e-08 71.3
135 TraesCS7B01G376400 chr2B 94.416 197 9 2 1456 1651 731352396 731352201 9.950000e-78 302.0
136 TraesCS7B01G376400 chr2B 95.652 184 8 0 1461 1644 413906254 413906071 4.630000e-76 296.0
137 TraesCS7B01G376400 chr2B 90.367 218 18 3 5893 6108 621207318 621207102 3.600000e-72 283.0
138 TraesCS7B01G376400 chr2B 91.707 205 16 1 5905 6108 633645547 633645343 3.600000e-72 283.0
139 TraesCS7B01G376400 chr2B 83.039 283 43 5 1153 1434 174831237 174830959 1.020000e-62 252.0
140 TraesCS7B01G376400 chr2B 87.097 93 4 4 3602 3688 726552131 726552221 1.400000e-16 99.0
141 TraesCS7B01G376400 chr2B 81.905 105 13 5 541 643 763447770 763447870 3.920000e-12 84.2
142 TraesCS7B01G376400 chr2B 84.884 86 5 5 3602 3686 31599912 31599834 5.080000e-11 80.5
143 TraesCS7B01G376400 chr4B 91.589 214 15 3 5896 6108 626405362 626405151 5.990000e-75 292.0
144 TraesCS7B01G376400 chr4B 79.412 238 39 8 1194 1426 579729978 579730210 6.340000e-35 159.0
145 TraesCS7B01G376400 chr4B 81.443 97 13 5 5253 5346 66469227 66469321 2.360000e-09 75.0
146 TraesCS7B01G376400 chr4B 80.808 99 8 3 3590 3678 104337317 104337414 3.950000e-07 67.6
147 TraesCS7B01G376400 chrUn 82.178 101 7 4 3589 3679 31861308 31861209 6.570000e-10 76.8
148 TraesCS7B01G376400 chrUn 83.721 86 4 4 3602 3678 104668808 104668892 8.490000e-09 73.1
149 TraesCS7B01G376400 chrUn 82.759 87 4 2 3602 3678 84435465 84435380 3.950000e-07 67.6
150 TraesCS7B01G376400 chrUn 95.238 42 1 1 3602 3643 93828914 93828874 1.420000e-06 65.8
151 TraesCS7B01G376400 chrUn 93.182 44 2 1 3602 3645 19086531 19086489 5.110000e-06 63.9
152 TraesCS7B01G376400 chrUn 93.182 44 2 1 3602 3645 65138953 65138911 5.110000e-06 63.9
153 TraesCS7B01G376400 chrUn 93.182 44 2 1 3602 3645 197752395 197752437 5.110000e-06 63.9
154 TraesCS7B01G376400 chrUn 97.368 38 0 1 467 503 235691557 235691594 5.110000e-06 63.9
155 TraesCS7B01G376400 chrUn 97.368 38 0 1 467 503 248751775 248751812 5.110000e-06 63.9
156 TraesCS7B01G376400 chrUn 97.297 37 1 0 474 510 376893093 376893129 5.110000e-06 63.9
157 TraesCS7B01G376400 chrUn 97.297 37 1 0 474 510 443265138 443265102 5.110000e-06 63.9
158 TraesCS7B01G376400 chrUn 95.000 40 1 1 466 505 214806174 214806212 1.840000e-05 62.1
159 TraesCS7B01G376400 chrUn 94.737 38 2 0 466 503 6056965 6056928 6.610000e-05 60.2
160 TraesCS7B01G376400 chrUn 94.737 38 2 0 466 503 40180489 40180452 6.610000e-05 60.2
161 TraesCS7B01G376400 chrUn 94.872 39 1 1 474 512 114796236 114796273 6.610000e-05 60.2
162 TraesCS7B01G376400 chrUn 100.000 31 0 0 474 504 18431049 18431079 2.380000e-04 58.4
163 TraesCS7B01G376400 chrUn 94.595 37 2 0 467 503 40187913 40187877 2.380000e-04 58.4
164 TraesCS7B01G376400 chrUn 100.000 31 0 0 474 504 244859506 244859536 2.380000e-04 58.4
165 TraesCS7B01G376400 chrUn 92.500 40 2 1 465 503 317095212 317095251 8.550000e-04 56.5
166 TraesCS7B01G376400 chrUn 86.792 53 4 3 465 516 317132403 317132353 8.550000e-04 56.5
167 TraesCS7B01G376400 chrUn 92.500 40 2 1 465 503 373027158 373027197 8.550000e-04 56.5
168 TraesCS7B01G376400 chrUn 94.444 36 2 0 4599 4634 379978516 379978551 8.550000e-04 56.5
169 TraesCS7B01G376400 chrUn 79.518 83 12 5 433 514 378357263 378357185 3.000000e-03 54.7
170 TraesCS7B01G376400 chrUn 79.518 83 12 5 433 514 393326520 393326442 3.000000e-03 54.7
171 TraesCS7B01G376400 chrUn 100.000 29 0 0 3617 3645 446005958 446005930 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G376400 chr7B 641254394 641260501 6107 False 11280.000000 11280 100.000000 1 6108 1 chr7B.!!$F2 6107
1 TraesCS7B01G376400 chr7B 641325253 641331009 5756 False 729.428571 1779 89.922286 2838 5904 7 chr7B.!!$F4 3066
2 TraesCS7B01G376400 chr7B 748331195 748331735 540 True 667.000000 667 88.930000 5365 5905 1 chr7B.!!$R4 540
3 TraesCS7B01G376400 chr7B 104298435 104298969 534 True 647.000000 647 88.476000 5369 5905 1 chr7B.!!$R1 536
4 TraesCS7B01G376400 chr7D 577843036 577847887 4851 False 1455.000000 2372 91.106250 630 5357 4 chr7D.!!$F4 4727
5 TraesCS7B01G376400 chr7D 530075379 530075880 501 False 684.000000 684 91.171000 1 514 1 chr7D.!!$F1 513
6 TraesCS7B01G376400 chr7A 670004022 670008934 4912 False 879.000000 1439 90.725000 633 5078 6 chr7A.!!$F1 4445
7 TraesCS7B01G376400 chr7A 149028960 149029553 593 True 368.000000 368 78.738000 5334 5906 1 chr7A.!!$R1 572
8 TraesCS7B01G376400 chr6B 75672574 75673096 522 True 821.000000 821 95.229000 1 516 1 chr6B.!!$R1 515
9 TraesCS7B01G376400 chr3D 141346399 141346904 505 False 787.000000 787 94.872000 1 503 1 chr3D.!!$F3 502
10 TraesCS7B01G376400 chr4A 140718645 140719151 506 True 785.000000 785 94.685000 1 506 1 chr4A.!!$R3 505
11 TraesCS7B01G376400 chr4A 140698600 140699110 510 True 776.000000 776 94.152000 1 510 1 chr4A.!!$R2 509
12 TraesCS7B01G376400 chr6D 3109181 3109690 509 True 782.000000 782 94.531000 1 505 1 chr6D.!!$R1 504
13 TraesCS7B01G376400 chr6D 20134460 20134993 533 False 671.000000 671 89.366000 5371 5905 1 chr6D.!!$F5 534
14 TraesCS7B01G376400 chr6D 28684240 28684742 502 True 508.000000 508 85.135000 1 510 1 chr6D.!!$R2 509
15 TraesCS7B01G376400 chr5A 568808086 568808593 507 False 774.000000 774 94.291000 1 505 1 chr5A.!!$F2 504
16 TraesCS7B01G376400 chr3B 290142529 290143034 505 True 749.000000 749 93.478000 1 503 1 chr3B.!!$R1 502
17 TraesCS7B01G376400 chr1A 12041650 12042163 513 False 745.000000 745 93.191000 1 503 1 chr1A.!!$F1 502
18 TraesCS7B01G376400 chr5D 220673939 220674467 528 False 691.000000 691 90.226000 5374 5905 1 chr5D.!!$F1 531
19 TraesCS7B01G376400 chr2A 66767301 66767838 537 True 658.000000 658 88.745000 5365 5905 1 chr2A.!!$R1 540
20 TraesCS7B01G376400 chr2D 19634233 19634757 524 True 654.000000 654 89.184000 5380 5905 1 chr2D.!!$R1 525
21 TraesCS7B01G376400 chr1D 431763558 431764094 536 False 651.000000 651 88.519000 5367 5905 1 chr1D.!!$F5 538
22 TraesCS7B01G376400 chr5B 446454667 446455199 532 False 647.000000 647 88.598000 5371 5904 1 chr5B.!!$F4 533
23 TraesCS7B01G376400 chr1B 45204702 45205208 506 False 645.000000 645 89.784000 1 504 1 chr1B.!!$F2 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 624 0.318120 CAATTTTCCCTTGCGCCACT 59.682 50.0 4.18 0.0 0.0 4.00 F
1533 1625 0.249398 CTATTAATCCCTCCGCCCCG 59.751 60.0 0.00 0.0 0.0 5.73 F
2852 3359 0.322456 TTGGCCCATCTGAACTTCCG 60.322 55.0 0.00 0.0 0.0 4.30 F
3548 4760 0.185416 TTTGGCCGGGGAACAGTTTA 59.815 50.0 2.18 0.0 0.0 2.01 F
3750 4968 0.178975 ACCCCGTTTTCTGATGCCAA 60.179 50.0 0.00 0.0 0.0 4.52 F
3751 4969 0.527565 CCCCGTTTTCTGATGCCAAG 59.472 55.0 0.00 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 2050 0.036858 TTTCGGACGGATCATGCACA 60.037 50.000 0.00 0.0 0.00 4.57 R
2984 3807 0.109342 ACTTGTGGCAGTTCCTCTGG 59.891 55.000 0.00 0.0 43.78 3.86 R
3659 4877 0.259938 GTACTCCCTCCGTCCCCTAA 59.740 60.000 0.00 0.0 0.00 2.69 R
4699 6557 1.257750 ACCGCATGTGCTGGACTAGA 61.258 55.000 18.09 0.0 37.85 2.43 R
4888 6844 1.902508 ACATCATCCACGAGGTTGAGT 59.097 47.619 16.20 11.8 44.57 3.41 R
5190 7147 1.975471 AACGAATTAGGGAAGGGGGA 58.025 50.000 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 255 4.636206 CAGGAAGGGTACAATTCAAGCTAC 59.364 45.833 10.41 0.00 0.00 3.58
445 466 0.474184 CTGTGTGGGGACTTGAACCT 59.526 55.000 0.00 0.00 0.00 3.50
451 474 2.361119 GTGGGGACTTGAACCTTGTTTC 59.639 50.000 0.00 0.00 0.00 2.78
510 539 5.874810 CGGGCATTTGTGCTAGTATACATAT 59.125 40.000 5.50 0.00 34.73 1.78
512 541 7.710907 CGGGCATTTGTGCTAGTATACATATAT 59.289 37.037 5.50 0.00 34.73 0.86
534 563 8.798975 ATATATAGGGTCCAACTCTTTCTCAA 57.201 34.615 0.00 0.00 27.79 3.02
535 564 3.493767 AGGGTCCAACTCTTTCTCAAC 57.506 47.619 0.00 0.00 0.00 3.18
536 565 3.049344 AGGGTCCAACTCTTTCTCAACT 58.951 45.455 0.00 0.00 0.00 3.16
537 566 4.232091 AGGGTCCAACTCTTTCTCAACTA 58.768 43.478 0.00 0.00 0.00 2.24
538 567 4.284746 AGGGTCCAACTCTTTCTCAACTAG 59.715 45.833 0.00 0.00 0.00 2.57
539 568 4.563786 GGGTCCAACTCTTTCTCAACTAGG 60.564 50.000 0.00 0.00 0.00 3.02
540 569 4.563786 GGTCCAACTCTTTCTCAACTAGGG 60.564 50.000 0.00 0.00 0.00 3.53
541 570 3.583086 TCCAACTCTTTCTCAACTAGGGG 59.417 47.826 0.00 0.00 0.00 4.79
542 571 3.328050 CCAACTCTTTCTCAACTAGGGGT 59.672 47.826 0.00 0.00 0.00 4.95
543 572 4.530946 CCAACTCTTTCTCAACTAGGGGTA 59.469 45.833 0.00 0.00 0.00 3.69
545 574 5.941555 ACTCTTTCTCAACTAGGGGTATG 57.058 43.478 0.00 0.00 0.00 2.39
546 575 5.590818 ACTCTTTCTCAACTAGGGGTATGA 58.409 41.667 0.00 0.00 0.00 2.15
547 576 5.659079 ACTCTTTCTCAACTAGGGGTATGAG 59.341 44.000 0.00 0.47 40.46 2.90
548 577 5.838955 TCTTTCTCAACTAGGGGTATGAGA 58.161 41.667 0.46 0.46 44.74 3.27
549 578 5.657302 TCTTTCTCAACTAGGGGTATGAGAC 59.343 44.000 3.96 0.00 45.73 3.36
550 579 4.883021 TCTCAACTAGGGGTATGAGACT 57.117 45.455 0.46 0.00 42.36 3.24
551 580 5.988865 TCTCAACTAGGGGTATGAGACTA 57.011 43.478 0.46 0.00 42.36 2.59
554 583 5.692928 TCAACTAGGGGTATGAGACTAGAC 58.307 45.833 0.00 0.00 37.09 2.59
555 584 5.432390 TCAACTAGGGGTATGAGACTAGACT 59.568 44.000 0.00 0.00 37.09 3.24
558 587 7.463054 ACTAGGGGTATGAGACTAGACTTTA 57.537 40.000 0.00 0.00 37.09 1.85
559 588 7.519927 ACTAGGGGTATGAGACTAGACTTTAG 58.480 42.308 0.00 0.00 37.09 1.85
560 589 5.141910 AGGGGTATGAGACTAGACTTTAGC 58.858 45.833 0.00 2.16 0.00 3.09
561 590 4.894114 GGGGTATGAGACTAGACTTTAGCA 59.106 45.833 0.00 0.00 0.00 3.49
562 591 5.221283 GGGGTATGAGACTAGACTTTAGCAC 60.221 48.000 0.00 0.00 0.00 4.40
563 592 5.221283 GGGTATGAGACTAGACTTTAGCACC 60.221 48.000 0.00 0.85 0.00 5.01
564 593 5.360144 GGTATGAGACTAGACTTTAGCACCA 59.640 44.000 0.00 0.00 0.00 4.17
565 594 4.785511 TGAGACTAGACTTTAGCACCAC 57.214 45.455 0.00 0.00 0.00 4.16
566 595 3.510360 TGAGACTAGACTTTAGCACCACC 59.490 47.826 0.00 0.00 0.00 4.61
567 596 2.832733 AGACTAGACTTTAGCACCACCC 59.167 50.000 0.00 0.00 0.00 4.61
568 597 2.565834 GACTAGACTTTAGCACCACCCA 59.434 50.000 0.00 0.00 0.00 4.51
569 598 3.182152 ACTAGACTTTAGCACCACCCAT 58.818 45.455 0.00 0.00 0.00 4.00
570 599 2.789409 AGACTTTAGCACCACCCATC 57.211 50.000 0.00 0.00 0.00 3.51
571 600 1.985159 AGACTTTAGCACCACCCATCA 59.015 47.619 0.00 0.00 0.00 3.07
572 601 2.084546 GACTTTAGCACCACCCATCAC 58.915 52.381 0.00 0.00 0.00 3.06
573 602 1.705186 ACTTTAGCACCACCCATCACT 59.295 47.619 0.00 0.00 0.00 3.41
578 607 1.462731 GCACCACCCATCACTTGCAA 61.463 55.000 0.00 0.00 0.00 4.08
579 608 1.259609 CACCACCCATCACTTGCAAT 58.740 50.000 0.00 0.00 0.00 3.56
581 610 2.037511 CACCACCCATCACTTGCAATTT 59.962 45.455 0.00 0.00 0.00 1.82
582 611 2.705127 ACCACCCATCACTTGCAATTTT 59.295 40.909 0.00 0.00 0.00 1.82
584 613 3.328505 CACCCATCACTTGCAATTTTCC 58.671 45.455 0.00 0.00 0.00 3.13
585 614 2.302733 ACCCATCACTTGCAATTTTCCC 59.697 45.455 0.00 0.00 0.00 3.97
586 615 2.568509 CCCATCACTTGCAATTTTCCCT 59.431 45.455 0.00 0.00 0.00 4.20
587 616 3.008266 CCCATCACTTGCAATTTTCCCTT 59.992 43.478 0.00 0.00 0.00 3.95
588 617 3.998341 CCATCACTTGCAATTTTCCCTTG 59.002 43.478 0.00 0.00 0.00 3.61
592 621 3.874873 GCAATTTTCCCTTGCGCC 58.125 55.556 4.18 0.00 39.57 6.53
593 622 1.005156 GCAATTTTCCCTTGCGCCA 60.005 52.632 4.18 0.00 39.57 5.69
594 623 1.291184 GCAATTTTCCCTTGCGCCAC 61.291 55.000 4.18 0.00 39.57 5.01
595 624 0.318120 CAATTTTCCCTTGCGCCACT 59.682 50.000 4.18 0.00 0.00 4.00
596 625 1.047801 AATTTTCCCTTGCGCCACTT 58.952 45.000 4.18 0.00 0.00 3.16
597 626 1.047801 ATTTTCCCTTGCGCCACTTT 58.952 45.000 4.18 0.00 0.00 2.66
598 627 1.693627 TTTTCCCTTGCGCCACTTTA 58.306 45.000 4.18 0.00 0.00 1.85
599 628 1.693627 TTTCCCTTGCGCCACTTTAA 58.306 45.000 4.18 0.00 0.00 1.52
600 629 1.243902 TTCCCTTGCGCCACTTTAAG 58.756 50.000 4.18 0.00 0.00 1.85
601 630 0.398696 TCCCTTGCGCCACTTTAAGA 59.601 50.000 4.18 0.00 0.00 2.10
602 631 1.004277 TCCCTTGCGCCACTTTAAGAT 59.996 47.619 4.18 0.00 0.00 2.40
604 633 3.118038 TCCCTTGCGCCACTTTAAGATAT 60.118 43.478 4.18 0.00 0.00 1.63
605 634 3.251004 CCCTTGCGCCACTTTAAGATATC 59.749 47.826 4.18 0.00 0.00 1.63
606 635 3.876914 CCTTGCGCCACTTTAAGATATCA 59.123 43.478 4.18 0.00 0.00 2.15
609 638 5.888691 TGCGCCACTTTAAGATATCAAAA 57.111 34.783 4.18 4.49 0.00 2.44
611 640 6.862209 TGCGCCACTTTAAGATATCAAAAAT 58.138 32.000 4.18 0.00 0.00 1.82
612 641 7.319646 TGCGCCACTTTAAGATATCAAAAATT 58.680 30.769 4.18 0.00 0.00 1.82
614 643 9.463443 GCGCCACTTTAAGATATCAAAAATTAT 57.537 29.630 5.32 0.00 0.00 1.28
627 656 7.806409 ATCAAAAATTATTAATGGGCCAAGC 57.194 32.000 11.89 0.00 0.00 4.01
643 672 4.442893 GGCCAAGCCCATTTATTTCTAACC 60.443 45.833 0.00 0.00 44.06 2.85
654 683 2.773993 TTTCTAACCATCACCGGTCC 57.226 50.000 2.59 0.00 38.76 4.46
846 878 3.450457 GCTCTTCATCTTCCTCTTCCTCA 59.550 47.826 0.00 0.00 0.00 3.86
847 879 4.101430 GCTCTTCATCTTCCTCTTCCTCAT 59.899 45.833 0.00 0.00 0.00 2.90
850 882 5.363292 TCTTCATCTTCCTCTTCCTCATCAG 59.637 44.000 0.00 0.00 0.00 2.90
852 884 3.113191 TCTTCCTCTTCCTCATCAGCT 57.887 47.619 0.00 0.00 0.00 4.24
853 885 4.256983 TCTTCCTCTTCCTCATCAGCTA 57.743 45.455 0.00 0.00 0.00 3.32
854 886 4.214310 TCTTCCTCTTCCTCATCAGCTAG 58.786 47.826 0.00 0.00 0.00 3.42
855 887 2.315176 TCCTCTTCCTCATCAGCTAGC 58.685 52.381 6.62 6.62 0.00 3.42
866 898 5.108187 TCATCAGCTAGCATTTTCTTCCT 57.892 39.130 18.83 0.00 0.00 3.36
934 966 0.881118 CCGATCCACCCAACACTTTG 59.119 55.000 0.00 0.00 0.00 2.77
979 1011 3.141398 GACTCACAATCAAGGTCAAGCA 58.859 45.455 0.00 0.00 0.00 3.91
1227 1318 2.266055 CTGGTGGGCTCGAACCTC 59.734 66.667 4.57 2.25 37.36 3.85
1290 1381 0.679505 TCCTGGACGACAACTTCCTG 59.320 55.000 0.00 0.00 35.76 3.86
1478 1570 8.748582 GTTAACAACCAAAAATGCTACACTTAC 58.251 33.333 0.00 0.00 0.00 2.34
1480 1572 5.066764 ACAACCAAAAATGCTACACTTACGT 59.933 36.000 0.00 0.00 0.00 3.57
1481 1573 6.260493 ACAACCAAAAATGCTACACTTACGTA 59.740 34.615 0.00 0.00 0.00 3.57
1482 1574 6.864360 ACCAAAAATGCTACACTTACGTAA 57.136 33.333 7.94 7.94 0.00 3.18
1483 1575 7.261829 ACCAAAAATGCTACACTTACGTAAA 57.738 32.000 9.68 0.00 0.00 2.01
1484 1576 7.705214 ACCAAAAATGCTACACTTACGTAAAA 58.295 30.769 9.68 0.00 0.00 1.52
1485 1577 7.858879 ACCAAAAATGCTACACTTACGTAAAAG 59.141 33.333 9.68 7.24 0.00 2.27
1486 1578 7.858879 CCAAAAATGCTACACTTACGTAAAAGT 59.141 33.333 9.68 12.51 40.33 2.66
1487 1579 8.889000 CAAAAATGCTACACTTACGTAAAAGTC 58.111 33.333 9.68 1.46 37.61 3.01
1488 1580 7.958053 AAATGCTACACTTACGTAAAAGTCT 57.042 32.000 9.68 0.00 37.61 3.24
1490 1582 8.458212 AATGCTACACTTACGTAAAAGTCTAC 57.542 34.615 9.68 5.03 37.61 2.59
1503 1595 6.850823 CGTAAAAGTCTACGTACAGTTGTGTA 59.149 38.462 0.00 0.00 39.81 2.90
1504 1596 7.375808 CGTAAAAGTCTACGTACAGTTGTGTAA 59.624 37.037 0.00 0.00 40.94 2.41
1506 1598 8.652810 AAAAGTCTACGTACAGTTGTGTAATT 57.347 30.769 0.00 0.00 40.94 1.40
1507 1599 9.748708 AAAAGTCTACGTACAGTTGTGTAATTA 57.251 29.630 0.00 0.00 40.94 1.40
1508 1600 8.961294 AAGTCTACGTACAGTTGTGTAATTAG 57.039 34.615 0.00 0.00 40.94 1.73
1509 1601 7.025963 AGTCTACGTACAGTTGTGTAATTAGC 58.974 38.462 0.00 0.00 40.94 3.09
1512 1604 6.271488 ACGTACAGTTGTGTAATTAGCCTA 57.729 37.500 0.00 0.00 40.94 3.93
1515 1607 6.810182 CGTACAGTTGTGTAATTAGCCTAACT 59.190 38.462 0.00 0.00 40.94 2.24
1516 1608 7.970061 CGTACAGTTGTGTAATTAGCCTAACTA 59.030 37.037 0.00 0.00 40.94 2.24
1517 1609 9.813446 GTACAGTTGTGTAATTAGCCTAACTAT 57.187 33.333 0.00 0.00 40.94 2.12
1527 1619 9.887629 GTAATTAGCCTAACTATTAATCCCTCC 57.112 37.037 0.00 0.00 0.00 4.30
1528 1620 6.600882 TTAGCCTAACTATTAATCCCTCCG 57.399 41.667 0.00 0.00 0.00 4.63
1530 1622 3.619242 GCCTAACTATTAATCCCTCCGCC 60.619 52.174 0.00 0.00 0.00 6.13
1531 1623 3.055312 CCTAACTATTAATCCCTCCGCCC 60.055 52.174 0.00 0.00 0.00 6.13
1532 1624 1.359168 ACTATTAATCCCTCCGCCCC 58.641 55.000 0.00 0.00 0.00 5.80
1533 1625 0.249398 CTATTAATCCCTCCGCCCCG 59.751 60.000 0.00 0.00 0.00 5.73
1534 1626 1.833787 TATTAATCCCTCCGCCCCGC 61.834 60.000 0.00 0.00 0.00 6.13
1535 1627 4.872574 TAATCCCTCCGCCCCGCT 62.873 66.667 0.00 0.00 0.00 5.52
1540 1632 4.918201 CCTCCGCCCCGCTGATTC 62.918 72.222 0.00 0.00 0.00 2.52
1541 1633 4.918201 CTCCGCCCCGCTGATTCC 62.918 72.222 0.00 0.00 0.00 3.01
1551 1643 4.651867 CTGATTCCAGCTGGGTGG 57.348 61.111 32.23 14.14 39.19 4.61
1552 1644 1.077212 CTGATTCCAGCTGGGTGGG 60.077 63.158 32.23 14.83 38.26 4.61
1564 1656 2.039831 GGTGGGGCCCCTCTCATA 60.040 66.667 40.66 18.20 36.94 2.15
1565 1657 1.696314 GGTGGGGCCCCTCTCATAA 60.696 63.158 40.66 17.34 36.94 1.90
1568 1660 1.217942 GTGGGGCCCCTCTCATAATTT 59.782 52.381 40.66 0.00 36.94 1.82
1569 1661 1.499007 TGGGGCCCCTCTCATAATTTC 59.501 52.381 40.66 10.78 36.94 2.17
1570 1662 1.203063 GGGGCCCCTCTCATAATTTCC 60.203 57.143 35.49 0.42 0.00 3.13
1572 1664 2.224892 GGGCCCCTCTCATAATTTCCTC 60.225 54.545 12.23 0.00 0.00 3.71
1573 1665 2.224892 GGCCCCTCTCATAATTTCCTCC 60.225 54.545 0.00 0.00 0.00 4.30
1574 1666 2.443255 GCCCCTCTCATAATTTCCTCCA 59.557 50.000 0.00 0.00 0.00 3.86
1575 1667 3.117512 GCCCCTCTCATAATTTCCTCCAA 60.118 47.826 0.00 0.00 0.00 3.53
1576 1668 4.464947 CCCCTCTCATAATTTCCTCCAAC 58.535 47.826 0.00 0.00 0.00 3.77
1577 1669 4.166919 CCCCTCTCATAATTTCCTCCAACT 59.833 45.833 0.00 0.00 0.00 3.16
1578 1670 5.128919 CCCTCTCATAATTTCCTCCAACTG 58.871 45.833 0.00 0.00 0.00 3.16
1580 1672 6.418101 CCTCTCATAATTTCCTCCAACTGAA 58.582 40.000 0.00 0.00 0.00 3.02
1581 1673 6.886459 CCTCTCATAATTTCCTCCAACTGAAA 59.114 38.462 0.00 0.00 35.17 2.69
1582 1674 7.394359 CCTCTCATAATTTCCTCCAACTGAAAA 59.606 37.037 0.00 0.00 34.43 2.29
1583 1675 8.704849 TCTCATAATTTCCTCCAACTGAAAAA 57.295 30.769 0.00 0.00 34.43 1.94
1615 1707 8.260270 CTAAGCCATTAGGTTACTTTACGTTT 57.740 34.615 0.00 0.00 37.40 3.60
1617 1709 6.232692 AGCCATTAGGTTACTTTACGTTTGA 58.767 36.000 0.00 0.00 37.19 2.69
1618 1710 6.882678 AGCCATTAGGTTACTTTACGTTTGAT 59.117 34.615 0.00 0.00 37.19 2.57
1619 1711 7.392393 AGCCATTAGGTTACTTTACGTTTGATT 59.608 33.333 0.00 0.00 37.19 2.57
1620 1712 8.667463 GCCATTAGGTTACTTTACGTTTGATTA 58.333 33.333 0.00 0.00 37.19 1.75
1622 1714 9.977762 CATTAGGTTACTTTACGTTTGATTACC 57.022 33.333 0.00 0.00 0.00 2.85
1623 1715 9.723601 ATTAGGTTACTTTACGTTTGATTACCA 57.276 29.630 0.00 0.00 0.00 3.25
1624 1716 9.553064 TTAGGTTACTTTACGTTTGATTACCAA 57.447 29.630 0.00 0.00 0.00 3.67
1625 1717 8.091385 AGGTTACTTTACGTTTGATTACCAAG 57.909 34.615 0.00 0.00 35.94 3.61
1626 1718 7.716560 AGGTTACTTTACGTTTGATTACCAAGT 59.283 33.333 0.00 0.00 35.94 3.16
1627 1719 8.987890 GGTTACTTTACGTTTGATTACCAAGTA 58.012 33.333 0.00 0.00 35.94 2.24
1629 1721 7.662604 ACTTTACGTTTGATTACCAAGTAGG 57.337 36.000 0.00 0.00 45.67 3.18
1641 1733 2.991250 CCAAGTAGGTGTAGCATTGCT 58.009 47.619 16.63 16.63 43.41 3.91
1642 1734 2.939103 CCAAGTAGGTGTAGCATTGCTC 59.061 50.000 15.81 7.72 40.44 4.26
1644 1736 1.825474 AGTAGGTGTAGCATTGCTCGT 59.175 47.619 15.81 5.40 40.44 4.18
1645 1737 2.233922 AGTAGGTGTAGCATTGCTCGTT 59.766 45.455 15.81 0.68 40.44 3.85
1646 1738 3.446161 AGTAGGTGTAGCATTGCTCGTTA 59.554 43.478 15.81 0.00 40.44 3.18
1647 1739 3.328382 AGGTGTAGCATTGCTCGTTAA 57.672 42.857 15.81 0.00 40.44 2.01
1649 1741 2.739913 GGTGTAGCATTGCTCGTTAACA 59.260 45.455 15.81 10.71 40.44 2.41
1650 1742 3.187637 GGTGTAGCATTGCTCGTTAACAA 59.812 43.478 15.81 0.00 40.44 2.83
1651 1743 4.148891 GTGTAGCATTGCTCGTTAACAAC 58.851 43.478 15.81 5.72 40.44 3.32
1652 1744 2.989422 AGCATTGCTCGTTAACAACC 57.011 45.000 5.03 0.00 30.62 3.77
1937 2035 7.624360 TTTAGAGTACTAAAATGCCCATGTG 57.376 36.000 0.00 0.00 43.02 3.21
1938 2036 3.947834 AGAGTACTAAAATGCCCATGTGC 59.052 43.478 0.00 0.00 0.00 4.57
1968 2066 2.516589 CGTGTGCATGATCCGTCCG 61.517 63.158 0.00 0.00 0.00 4.79
2115 2221 4.565531 GCATGCTGCACTTCAACC 57.434 55.556 11.37 0.00 44.26 3.77
2138 2244 2.831526 AGTAATTCAAGCCCCGCAAAAT 59.168 40.909 0.00 0.00 0.00 1.82
2263 2369 0.601558 ACCACGAGCACGACTATGTT 59.398 50.000 11.40 0.00 42.66 2.71
2414 2883 3.228188 TGTCTGGCTGGATTCAACTTT 57.772 42.857 0.00 0.00 0.00 2.66
2417 2886 3.319122 GTCTGGCTGGATTCAACTTTGTT 59.681 43.478 0.00 0.00 0.00 2.83
2426 2895 5.976534 TGGATTCAACTTTGTTTGTGAATCG 59.023 36.000 15.34 0.00 41.20 3.34
2432 2901 4.104776 ACTTTGTTTGTGAATCGTGCAAG 58.895 39.130 0.00 0.00 0.00 4.01
2441 2910 4.032786 TGTGAATCGTGCAAGAATATGTCG 59.967 41.667 6.39 0.00 0.00 4.35
2624 3122 4.814294 CACCGGCCGCTGACTACC 62.814 72.222 22.85 0.00 0.00 3.18
2640 3138 6.471233 TGACTACCACTCCATGAATTCTAG 57.529 41.667 7.05 2.07 0.00 2.43
2686 3186 2.734276 ACAGCGAGTTCTTTCTCTCC 57.266 50.000 0.00 0.00 32.83 3.71
2709 3209 8.726870 TCCTTTTTACGGGAAATACAGATAAG 57.273 34.615 0.00 0.00 0.00 1.73
2852 3359 0.322456 TTGGCCCATCTGAACTTCCG 60.322 55.000 0.00 0.00 0.00 4.30
2857 3375 1.550524 CCCATCTGAACTTCCGTCTGA 59.449 52.381 0.00 0.00 0.00 3.27
2858 3376 2.611518 CCATCTGAACTTCCGTCTGAC 58.388 52.381 0.00 0.00 0.00 3.51
2933 3754 2.604174 CCCAGTTGTTGCCGTCGAC 61.604 63.158 5.18 5.18 0.00 4.20
2984 3807 5.333046 TCAACCTTCACGTCGATTTTTAC 57.667 39.130 0.00 0.00 0.00 2.01
2990 3813 3.581755 TCACGTCGATTTTTACCAGAGG 58.418 45.455 0.00 0.00 0.00 3.69
3046 3885 9.818796 TTTAGCTGTTTGCAAAAACTTAAAAAG 57.181 25.926 14.67 0.00 45.94 2.27
3075 3914 2.031682 ACAAAAACTGCGCTCTGATCAC 60.032 45.455 9.73 0.00 0.00 3.06
3163 4004 1.671979 ACCACTCATGCCGAATGATG 58.328 50.000 1.82 3.63 44.40 3.07
3276 4131 2.032549 GTGATGACGCCTATGTGCATTC 60.033 50.000 0.00 0.00 0.00 2.67
3305 4160 2.979814 TGGCATATCTACACAAGCGT 57.020 45.000 0.00 0.00 0.00 5.07
3310 4165 2.188837 TATCTACACAAGCGTCGCAG 57.811 50.000 21.09 13.88 0.00 5.18
3318 4173 1.588404 ACAAGCGTCGCAGAAATATCG 59.412 47.619 21.09 0.00 39.69 2.92
3330 4185 5.324697 GCAGAAATATCGAACTTTCACACC 58.675 41.667 19.27 6.34 34.52 4.16
3346 4201 0.881118 CACCGACCCTGAATTTGGTG 59.119 55.000 0.51 0.00 40.68 4.17
3369 4538 1.494721 TGTTTGGCAGAGTTTCCTCCT 59.505 47.619 0.00 0.00 38.58 3.69
3441 4610 1.741401 CGCCTTCCTTCATGACGCA 60.741 57.895 0.00 0.00 0.00 5.24
3506 4675 6.812998 TCTTACTCGATCCGGTAATGAATTT 58.187 36.000 0.00 0.00 0.00 1.82
3517 4686 7.434492 TCCGGTAATGAATTTTTGCTTAACAA 58.566 30.769 0.00 0.00 36.13 2.83
3541 4739 0.909623 TTTTGTTTTTGGCCGGGGAA 59.090 45.000 2.18 0.00 0.00 3.97
3547 4759 0.688087 TTTTGGCCGGGGAACAGTTT 60.688 50.000 2.18 0.00 0.00 2.66
3548 4760 0.185416 TTTGGCCGGGGAACAGTTTA 59.815 50.000 2.18 0.00 0.00 2.01
3560 4772 8.688151 CCGGGGAACAGTTTATTTTATTTCATA 58.312 33.333 0.00 0.00 0.00 2.15
3612 4830 8.684386 ACACATATATCATATACTCCCTCTCG 57.316 38.462 0.00 0.00 0.00 4.04
3613 4831 8.275758 ACACATATATCATATACTCCCTCTCGT 58.724 37.037 0.00 0.00 0.00 4.18
3614 4832 9.126151 CACATATATCATATACTCCCTCTCGTT 57.874 37.037 0.00 0.00 0.00 3.85
3615 4833 9.702253 ACATATATCATATACTCCCTCTCGTTT 57.298 33.333 0.00 0.00 0.00 3.60
3617 4835 9.922477 ATATATCATATACTCCCTCTCGTTTCA 57.078 33.333 0.00 0.00 0.00 2.69
3618 4836 8.830915 ATATCATATACTCCCTCTCGTTTCAT 57.169 34.615 0.00 0.00 0.00 2.57
3619 4837 9.922477 ATATCATATACTCCCTCTCGTTTCATA 57.078 33.333 0.00 0.00 0.00 2.15
3620 4838 8.651589 ATCATATACTCCCTCTCGTTTCATAA 57.348 34.615 0.00 0.00 0.00 1.90
3621 4839 8.651589 TCATATACTCCCTCTCGTTTCATAAT 57.348 34.615 0.00 0.00 0.00 1.28
3622 4840 9.749340 TCATATACTCCCTCTCGTTTCATAATA 57.251 33.333 0.00 0.00 0.00 0.98
3627 4845 8.707796 ACTCCCTCTCGTTTCATAATATAAGA 57.292 34.615 0.00 0.00 0.00 2.10
3628 4846 8.798402 ACTCCCTCTCGTTTCATAATATAAGAG 58.202 37.037 0.00 0.00 0.00 2.85
3629 4847 7.603651 TCCCTCTCGTTTCATAATATAAGAGC 58.396 38.462 0.00 0.00 0.00 4.09
3630 4848 6.528423 CCCTCTCGTTTCATAATATAAGAGCG 59.472 42.308 0.00 0.00 0.00 5.03
3631 4849 7.085116 CCTCTCGTTTCATAATATAAGAGCGT 58.915 38.462 0.00 0.00 0.00 5.07
3632 4850 7.595502 CCTCTCGTTTCATAATATAAGAGCGTT 59.404 37.037 0.00 0.00 0.00 4.84
3633 4851 8.867112 TCTCGTTTCATAATATAAGAGCGTTT 57.133 30.769 0.00 0.00 0.00 3.60
3634 4852 9.309516 TCTCGTTTCATAATATAAGAGCGTTTT 57.690 29.630 0.00 0.00 0.00 2.43
3635 4853 9.916397 CTCGTTTCATAATATAAGAGCGTTTTT 57.084 29.630 0.00 0.00 0.00 1.94
3636 4854 9.697250 TCGTTTCATAATATAAGAGCGTTTTTG 57.303 29.630 0.00 0.00 0.00 2.44
3637 4855 9.697250 CGTTTCATAATATAAGAGCGTTTTTGA 57.303 29.630 0.00 0.00 0.00 2.69
3640 4858 9.982291 TTCATAATATAAGAGCGTTTTTGACAC 57.018 29.630 0.00 0.00 0.00 3.67
3641 4859 9.378551 TCATAATATAAGAGCGTTTTTGACACT 57.621 29.630 0.00 0.00 0.00 3.55
3644 4862 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
3645 4863 6.854496 ATAAGAGCGTTTTTGACACTACAA 57.146 33.333 0.00 0.00 0.00 2.41
3646 4864 5.554822 AAGAGCGTTTTTGACACTACAAA 57.445 34.783 0.00 0.00 37.87 2.83
3647 4865 5.554822 AGAGCGTTTTTGACACTACAAAA 57.445 34.783 0.00 0.00 44.42 2.44
3657 4875 8.690680 TTTTGACACTACAAAAACGCTTTTAT 57.309 26.923 0.00 0.00 43.59 1.40
3658 4876 9.784680 TTTTGACACTACAAAAACGCTTTTATA 57.215 25.926 0.00 0.00 43.59 0.98
3659 4877 9.953697 TTTGACACTACAAAAACGCTTTTATAT 57.046 25.926 0.00 0.00 36.92 0.86
3660 4878 9.953697 TTGACACTACAAAAACGCTTTTATATT 57.046 25.926 0.00 0.00 32.85 1.28
3664 4882 9.498307 CACTACAAAAACGCTTTTATATTAGGG 57.502 33.333 0.00 0.00 32.85 3.53
3665 4883 8.680001 ACTACAAAAACGCTTTTATATTAGGGG 58.320 33.333 0.00 0.00 32.85 4.79
3666 4884 7.706100 ACAAAAACGCTTTTATATTAGGGGA 57.294 32.000 0.00 0.00 32.85 4.81
3667 4885 7.541162 ACAAAAACGCTTTTATATTAGGGGAC 58.459 34.615 0.00 0.00 32.85 4.46
3668 4886 5.996669 AAACGCTTTTATATTAGGGGACG 57.003 39.130 0.00 0.00 0.00 4.79
3669 4887 3.999046 ACGCTTTTATATTAGGGGACGG 58.001 45.455 0.00 0.00 0.00 4.79
3670 4888 3.642848 ACGCTTTTATATTAGGGGACGGA 59.357 43.478 0.00 0.00 0.00 4.69
3671 4889 4.243270 CGCTTTTATATTAGGGGACGGAG 58.757 47.826 0.00 0.00 0.00 4.63
3672 4890 4.576879 GCTTTTATATTAGGGGACGGAGG 58.423 47.826 0.00 0.00 0.00 4.30
3673 4891 4.565028 GCTTTTATATTAGGGGACGGAGGG 60.565 50.000 0.00 0.00 0.00 4.30
3674 4892 4.490547 TTTATATTAGGGGACGGAGGGA 57.509 45.455 0.00 0.00 0.00 4.20
3675 4893 2.625282 ATATTAGGGGACGGAGGGAG 57.375 55.000 0.00 0.00 0.00 4.30
3676 4894 1.238615 TATTAGGGGACGGAGGGAGT 58.761 55.000 0.00 0.00 0.00 3.85
3677 4895 1.238615 ATTAGGGGACGGAGGGAGTA 58.761 55.000 0.00 0.00 0.00 2.59
3678 4896 0.259938 TTAGGGGACGGAGGGAGTAC 59.740 60.000 0.00 0.00 0.00 2.73
3679 4897 0.625683 TAGGGGACGGAGGGAGTACT 60.626 60.000 0.00 0.00 0.00 2.73
3680 4898 0.625683 AGGGGACGGAGGGAGTACTA 60.626 60.000 0.00 0.00 0.00 1.82
3681 4899 0.482006 GGGGACGGAGGGAGTACTAT 59.518 60.000 0.00 0.00 0.00 2.12
3682 4900 1.707427 GGGGACGGAGGGAGTACTATA 59.293 57.143 0.00 0.00 0.00 1.31
3683 4901 2.311243 GGGGACGGAGGGAGTACTATAT 59.689 54.545 0.00 0.00 0.00 0.86
3687 4905 6.126361 GGGGACGGAGGGAGTACTATATTATA 60.126 46.154 0.00 0.00 0.00 0.98
3689 4907 8.664079 GGGACGGAGGGAGTACTATATTATATA 58.336 40.741 0.00 0.00 0.00 0.86
3692 4910 9.517868 ACGGAGGGAGTACTATATTATATATGC 57.482 37.037 0.00 0.00 0.00 3.14
3744 4962 0.536460 GCTTCCACCCCGTTTTCTGA 60.536 55.000 0.00 0.00 0.00 3.27
3745 4963 1.886655 GCTTCCACCCCGTTTTCTGAT 60.887 52.381 0.00 0.00 0.00 2.90
3746 4964 1.812571 CTTCCACCCCGTTTTCTGATG 59.187 52.381 0.00 0.00 0.00 3.07
3747 4965 0.608035 TCCACCCCGTTTTCTGATGC 60.608 55.000 0.00 0.00 0.00 3.91
3748 4966 1.595093 CCACCCCGTTTTCTGATGCC 61.595 60.000 0.00 0.00 0.00 4.40
3749 4967 0.893270 CACCCCGTTTTCTGATGCCA 60.893 55.000 0.00 0.00 0.00 4.92
3750 4968 0.178975 ACCCCGTTTTCTGATGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
3751 4969 0.527565 CCCCGTTTTCTGATGCCAAG 59.472 55.000 0.00 0.00 0.00 3.61
3808 5026 3.525800 AACCTTGAAGTTGGTAGGCAT 57.474 42.857 0.00 0.00 35.17 4.40
3868 5088 5.538118 TGACAAATATGGGCGAGTAGTATG 58.462 41.667 0.00 0.00 0.00 2.39
3874 5103 4.826274 ATGGGCGAGTAGTATGCATTAT 57.174 40.909 3.54 0.00 0.00 1.28
3921 5150 4.040952 AGTGTGCTTCTGACTACTTTCCAT 59.959 41.667 0.00 0.00 0.00 3.41
3932 5161 2.759149 TTTCCATGGGGGCATGCG 60.759 61.111 13.02 0.00 36.21 4.73
3949 5178 2.811855 TGCGTACGACTTTTCAACTCA 58.188 42.857 21.65 0.00 0.00 3.41
3950 5179 3.188492 TGCGTACGACTTTTCAACTCAA 58.812 40.909 21.65 0.00 0.00 3.02
3951 5180 3.244345 TGCGTACGACTTTTCAACTCAAG 59.756 43.478 21.65 0.00 0.00 3.02
3952 5181 3.488310 GCGTACGACTTTTCAACTCAAGA 59.512 43.478 21.65 0.00 0.00 3.02
3953 5182 4.026310 GCGTACGACTTTTCAACTCAAGAA 60.026 41.667 21.65 0.00 0.00 2.52
3954 5183 5.657499 CGTACGACTTTTCAACTCAAGAAG 58.343 41.667 10.44 0.00 0.00 2.85
3955 5184 5.457799 CGTACGACTTTTCAACTCAAGAAGA 59.542 40.000 10.44 0.00 0.00 2.87
3956 5185 6.020121 CGTACGACTTTTCAACTCAAGAAGAA 60.020 38.462 10.44 0.00 0.00 2.52
3957 5186 6.927294 ACGACTTTTCAACTCAAGAAGAAT 57.073 33.333 0.00 0.00 0.00 2.40
3958 5187 8.975439 GTACGACTTTTCAACTCAAGAAGAATA 58.025 33.333 0.00 0.00 0.00 1.75
4090 5344 7.008810 CGCAGACTCTCTTCTTTACAAATAGAC 59.991 40.741 0.00 0.00 0.00 2.59
4127 5381 2.340721 ATTGGAAGGCCCCATCAAAA 57.659 45.000 0.00 0.00 35.87 2.44
4170 5424 4.992688 TGTCGAAAAAGCAATTCAGTTGT 58.007 34.783 0.00 0.00 40.07 3.32
4185 5439 3.191791 TCAGTTGTTTAATTTAGGCGCCC 59.808 43.478 26.15 5.07 0.00 6.13
4212 5811 5.983720 CGACTCCTGTTTTAGAAAGTTGAGA 59.016 40.000 0.00 0.00 30.70 3.27
4241 5840 6.095440 GGCCTATTCAAAAGAATGCACTCTAA 59.905 38.462 0.00 0.00 0.00 2.10
4356 5967 3.133901 AGGTACATGATTGCGATGTGGTA 59.866 43.478 0.00 0.00 35.62 3.25
4359 5970 2.938451 ACATGATTGCGATGTGGTACTG 59.062 45.455 0.00 0.00 32.68 2.74
4506 6117 2.427453 CGCACCAGAGTACATCCTAACT 59.573 50.000 0.00 0.00 0.00 2.24
4525 6136 8.011883 TCCTAACTGGTATACTCTCTCTCTCTA 58.988 40.741 2.25 0.00 37.07 2.43
4549 6160 2.764572 TCTCTCTCTCTCATGCATGCAA 59.235 45.455 26.68 8.38 0.00 4.08
4550 6161 3.197116 TCTCTCTCTCTCATGCATGCAAA 59.803 43.478 26.68 15.03 0.00 3.68
4551 6162 3.939592 CTCTCTCTCTCATGCATGCAAAA 59.060 43.478 26.68 14.65 0.00 2.44
4552 6163 4.329392 TCTCTCTCTCATGCATGCAAAAA 58.671 39.130 26.68 11.98 0.00 1.94
4600 6458 7.754851 TTGGTTTTATTTTCTAGGTCACCTC 57.245 36.000 0.00 0.00 34.61 3.85
4679 6537 2.047179 GAGCCGTGGACAAGACCC 60.047 66.667 0.00 0.00 0.00 4.46
4699 6557 0.764752 GGCCTAGTAGGGAGCACCAT 60.765 60.000 18.13 0.00 43.89 3.55
4735 6593 1.371558 GTCGTGGCTCAAAGACCCT 59.628 57.895 0.00 0.00 0.00 4.34
4765 6721 1.134946 GGAAAAATCATGGACCCTGCG 59.865 52.381 0.00 0.00 0.00 5.18
4810 6766 0.761187 CAGCTCATAAGGCAGCCCTA 59.239 55.000 8.22 0.00 41.90 3.53
4888 6844 2.753452 CGTGGAAGACCTAGAACTGCTA 59.247 50.000 0.00 0.00 37.04 3.49
5133 7089 7.876582 GTGTAATAGTAGGACACTTTCTTTGGT 59.123 37.037 9.19 0.00 40.26 3.67
5134 7090 7.876068 TGTAATAGTAGGACACTTTCTTTGGTG 59.124 37.037 0.00 0.00 38.80 4.17
5135 7091 6.681729 ATAGTAGGACACTTTCTTTGGTGA 57.318 37.500 0.00 0.00 38.80 4.02
5206 7163 0.851469 GGGTCCCCCTTCCCTAATTC 59.149 60.000 0.00 0.00 41.34 2.17
5343 7302 8.146053 TCTTTACAGAGGGAGTATCATTTTCA 57.854 34.615 0.00 0.00 36.25 2.69
5411 7372 4.360405 TTCCTTTGCCTCCCGCCC 62.360 66.667 0.00 0.00 36.24 6.13
5452 7413 3.480133 CTCCGGTGGCCTTAGGGG 61.480 72.222 3.32 0.00 38.36 4.79
5485 7446 3.797353 GATCCCAGCCCTTGCCGA 61.797 66.667 0.00 0.00 38.69 5.54
5519 7480 8.084684 GCTCCATTTTTAGATGTTTCTTCAAGT 58.915 33.333 0.00 0.00 33.17 3.16
5557 7518 3.764434 TGTCCTGCTTAGAAAGACGAGAT 59.236 43.478 0.00 0.00 0.00 2.75
5559 7520 2.863137 CCTGCTTAGAAAGACGAGATGC 59.137 50.000 0.00 0.00 0.00 3.91
5738 7720 0.618458 TTCAGGTTGGATCCTTCCGG 59.382 55.000 14.23 15.00 45.89 5.14
5786 7768 0.520404 GCTGTTCTGATGCACTGGTG 59.480 55.000 0.00 0.00 0.00 4.17
5848 7830 3.243602 ACAACAAATTTTGCCCGACTACC 60.244 43.478 9.04 0.00 0.00 3.18
5906 7888 1.457303 CGCTTCAGTGCTTGTAGTCAC 59.543 52.381 0.00 0.00 0.00 3.67
5907 7889 2.760374 GCTTCAGTGCTTGTAGTCACT 58.240 47.619 0.00 0.00 43.67 3.41
5908 7890 3.611766 CGCTTCAGTGCTTGTAGTCACTA 60.612 47.826 0.00 0.00 41.19 2.74
5909 7891 3.675698 GCTTCAGTGCTTGTAGTCACTAC 59.324 47.826 8.15 8.15 41.19 2.73
5910 7892 4.559704 GCTTCAGTGCTTGTAGTCACTACT 60.560 45.833 16.09 0.00 41.19 2.57
5911 7893 5.335740 GCTTCAGTGCTTGTAGTCACTACTA 60.336 44.000 16.09 7.70 41.19 1.82
5912 7894 5.881777 TCAGTGCTTGTAGTCACTACTAG 57.118 43.478 18.91 18.91 41.19 2.57
5913 7895 4.700692 TCAGTGCTTGTAGTCACTACTAGG 59.299 45.833 22.85 10.13 41.19 3.02
5914 7896 4.017808 AGTGCTTGTAGTCACTACTAGGG 58.982 47.826 22.85 9.56 41.32 3.53
5915 7897 4.015084 GTGCTTGTAGTCACTACTAGGGA 58.985 47.826 22.85 9.60 39.14 4.20
5916 7898 4.461781 GTGCTTGTAGTCACTACTAGGGAA 59.538 45.833 22.85 6.55 39.14 3.97
5917 7899 5.047519 GTGCTTGTAGTCACTACTAGGGAAA 60.048 44.000 22.85 5.92 39.14 3.13
5918 7900 5.541101 TGCTTGTAGTCACTACTAGGGAAAA 59.459 40.000 22.85 5.31 39.14 2.29
5919 7901 5.868258 GCTTGTAGTCACTACTAGGGAAAAC 59.132 44.000 22.85 6.24 39.14 2.43
5920 7902 5.990120 TGTAGTCACTACTAGGGAAAACC 57.010 43.478 16.09 0.00 38.89 3.27
5921 7903 4.774200 TGTAGTCACTACTAGGGAAAACCC 59.226 45.833 16.09 0.00 38.89 4.11
5922 7904 4.143406 AGTCACTACTAGGGAAAACCCT 57.857 45.455 12.57 12.57 41.63 4.34
5923 7905 5.280998 AGTCACTACTAGGGAAAACCCTA 57.719 43.478 13.44 13.44 41.63 3.53
5933 7915 3.773667 AGGGAAAACCCTAGTAGTAGTGC 59.226 47.826 5.97 0.00 41.63 4.40
5934 7916 3.773667 GGGAAAACCCTAGTAGTAGTGCT 59.226 47.826 3.91 0.00 34.51 4.40
5935 7917 4.224594 GGGAAAACCCTAGTAGTAGTGCTT 59.775 45.833 3.91 0.00 34.51 3.91
5936 7918 5.176592 GGAAAACCCTAGTAGTAGTGCTTG 58.823 45.833 3.91 0.00 0.00 4.01
5937 7919 5.046807 GGAAAACCCTAGTAGTAGTGCTTGA 60.047 44.000 3.91 0.00 0.00 3.02
5938 7920 6.429521 AAAACCCTAGTAGTAGTGCTTGAA 57.570 37.500 3.91 0.00 0.00 2.69
5939 7921 6.429521 AAACCCTAGTAGTAGTGCTTGAAA 57.570 37.500 3.91 0.00 0.00 2.69
5940 7922 6.622427 AACCCTAGTAGTAGTGCTTGAAAT 57.378 37.500 3.91 0.00 0.00 2.17
5941 7923 7.729124 AACCCTAGTAGTAGTGCTTGAAATA 57.271 36.000 3.91 0.00 0.00 1.40
5942 7924 7.916077 ACCCTAGTAGTAGTGCTTGAAATAT 57.084 36.000 3.91 0.00 0.00 1.28
5943 7925 7.727181 ACCCTAGTAGTAGTGCTTGAAATATG 58.273 38.462 3.91 0.00 0.00 1.78
5944 7926 6.647067 CCCTAGTAGTAGTGCTTGAAATATGC 59.353 42.308 3.91 0.00 0.00 3.14
5945 7927 7.437748 CCTAGTAGTAGTGCTTGAAATATGCT 58.562 38.462 3.91 0.00 0.00 3.79
5946 7928 8.577296 CCTAGTAGTAGTGCTTGAAATATGCTA 58.423 37.037 3.91 0.00 0.00 3.49
5947 7929 9.619316 CTAGTAGTAGTGCTTGAAATATGCTAG 57.381 37.037 0.00 0.00 0.00 3.42
5948 7930 8.012957 AGTAGTAGTGCTTGAAATATGCTAGT 57.987 34.615 0.00 0.00 0.00 2.57
5949 7931 9.132923 AGTAGTAGTGCTTGAAATATGCTAGTA 57.867 33.333 0.00 0.00 0.00 1.82
5950 7932 9.400638 GTAGTAGTGCTTGAAATATGCTAGTAG 57.599 37.037 0.00 0.00 0.00 2.57
5951 7933 8.012957 AGTAGTGCTTGAAATATGCTAGTAGT 57.987 34.615 0.00 0.00 0.00 2.73
5952 7934 9.132923 AGTAGTGCTTGAAATATGCTAGTAGTA 57.867 33.333 0.00 0.00 0.00 1.82
5953 7935 9.400638 GTAGTGCTTGAAATATGCTAGTAGTAG 57.599 37.037 0.00 0.00 0.00 2.57
5962 7944 2.973419 GCTAGTAGTAGCGCTGGTAG 57.027 55.000 22.90 13.61 42.41 3.18
5963 7945 1.069091 GCTAGTAGTAGCGCTGGTAGC 60.069 57.143 22.90 19.07 42.41 3.58
5964 7946 2.219458 CTAGTAGTAGCGCTGGTAGCA 58.781 52.381 22.90 0.00 42.58 3.49
5965 7947 1.025812 AGTAGTAGCGCTGGTAGCAG 58.974 55.000 22.90 17.67 42.58 4.24
5966 7948 0.595310 GTAGTAGCGCTGGTAGCAGC 60.595 60.000 32.12 32.12 42.58 5.25
5980 7962 3.531829 CAGCGCTACTGCTATCGC 58.468 61.111 10.99 0.00 45.23 4.58
5983 7965 2.050895 CGCTACTGCTATCGCGCT 60.051 61.111 5.56 0.00 39.11 5.92
5984 7966 1.206831 CGCTACTGCTATCGCGCTA 59.793 57.895 5.56 0.00 39.11 4.26
5985 7967 1.060726 CGCTACTGCTATCGCGCTAC 61.061 60.000 5.56 0.00 39.11 3.58
5986 7968 0.040336 GCTACTGCTATCGCGCTACA 60.040 55.000 5.56 0.00 39.65 2.74
5987 7969 1.957089 CTACTGCTATCGCGCTACAG 58.043 55.000 5.56 8.98 39.65 2.74
5988 7970 0.040336 TACTGCTATCGCGCTACAGC 60.040 55.000 5.07 5.07 39.65 4.40
5989 7971 1.007964 CTGCTATCGCGCTACAGCT 60.008 57.895 13.66 0.00 39.65 4.24
5990 7972 0.238553 CTGCTATCGCGCTACAGCTA 59.761 55.000 13.66 0.00 39.65 3.32
5991 7973 0.666374 TGCTATCGCGCTACAGCTAA 59.334 50.000 13.66 0.00 39.65 3.09
5992 7974 1.053811 GCTATCGCGCTACAGCTAAC 58.946 55.000 4.75 0.00 39.32 2.34
5993 7975 1.599667 GCTATCGCGCTACAGCTAACA 60.600 52.381 4.75 0.00 39.32 2.41
5994 7976 2.922758 GCTATCGCGCTACAGCTAACAT 60.923 50.000 4.75 0.00 39.32 2.71
5995 7977 1.491670 ATCGCGCTACAGCTAACATG 58.508 50.000 5.56 0.00 39.32 3.21
5996 7978 0.172578 TCGCGCTACAGCTAACATGT 59.827 50.000 5.56 0.00 39.32 3.21
5997 7979 1.402613 TCGCGCTACAGCTAACATGTA 59.597 47.619 5.56 0.00 39.32 2.29
6005 7987 3.786635 ACAGCTAACATGTAGCAGTAGC 58.213 45.455 21.50 18.84 42.68 3.58
6006 7988 4.497507 TACAGCTAACATGTAGCAGTAGCG 60.498 45.833 21.50 16.85 42.68 4.26
6007 7989 6.658553 TACAGCTAACATGTAGCAGTAGCGA 61.659 44.000 21.50 10.42 42.68 4.93
6008 7990 7.903289 TACAGCTAACATGTAGCAGTAGCGAT 61.903 42.308 21.50 15.31 42.68 4.58
6009 7991 9.789713 TACAGCTAACATGTAGCAGTAGCGATG 62.790 44.444 21.50 16.42 42.68 3.84
6016 7998 1.429423 GCAGTAGCGATGTTTGCCC 59.571 57.895 0.00 0.00 0.00 5.36
6017 7999 1.305219 GCAGTAGCGATGTTTGCCCA 61.305 55.000 0.00 0.00 0.00 5.36
6018 8000 0.729116 CAGTAGCGATGTTTGCCCAG 59.271 55.000 0.00 0.00 0.00 4.45
6019 8001 1.026718 AGTAGCGATGTTTGCCCAGC 61.027 55.000 0.00 0.00 0.00 4.85
6020 8002 2.106074 TAGCGATGTTTGCCCAGCG 61.106 57.895 1.99 1.99 46.28 5.18
6022 8004 3.434319 CGATGTTTGCCCAGCGCT 61.434 61.111 2.64 2.64 37.43 5.92
6023 8005 2.106074 CGATGTTTGCCCAGCGCTA 61.106 57.895 10.99 0.00 37.43 4.26
6024 8006 1.429423 GATGTTTGCCCAGCGCTAC 59.571 57.895 10.99 3.72 38.78 3.58
6025 8007 1.002134 ATGTTTGCCCAGCGCTACT 60.002 52.632 10.99 0.00 38.78 2.57
6026 8008 1.308069 ATGTTTGCCCAGCGCTACTG 61.308 55.000 10.99 2.00 46.77 2.74
6027 8009 3.055719 TTTGCCCAGCGCTACTGC 61.056 61.111 10.99 14.02 45.78 4.40
6029 8011 2.178876 TTTGCCCAGCGCTACTGCTA 62.179 55.000 10.99 7.34 45.23 3.49
6030 8012 1.971505 TTGCCCAGCGCTACTGCTAT 61.972 55.000 10.99 0.00 45.23 2.97
6031 8013 1.112916 TGCCCAGCGCTACTGCTATA 61.113 55.000 10.99 0.00 45.23 1.31
6032 8014 0.667792 GCCCAGCGCTACTGCTATAC 60.668 60.000 10.99 0.00 45.23 1.47
6033 8015 0.038159 CCCAGCGCTACTGCTATACC 60.038 60.000 10.99 0.00 45.23 2.73
6034 8016 0.962489 CCAGCGCTACTGCTATACCT 59.038 55.000 10.99 0.00 45.23 3.08
6035 8017 2.160205 CCAGCGCTACTGCTATACCTA 58.840 52.381 10.99 0.00 45.23 3.08
6036 8018 2.162608 CCAGCGCTACTGCTATACCTAG 59.837 54.545 10.99 0.00 45.23 3.02
6037 8019 2.814919 CAGCGCTACTGCTATACCTAGT 59.185 50.000 10.99 0.00 45.23 2.57
6038 8020 3.253677 CAGCGCTACTGCTATACCTAGTT 59.746 47.826 10.99 0.00 45.23 2.24
6039 8021 4.454847 CAGCGCTACTGCTATACCTAGTTA 59.545 45.833 10.99 0.00 45.23 2.24
6040 8022 4.696402 AGCGCTACTGCTATACCTAGTTAG 59.304 45.833 8.99 0.00 45.14 2.34
6041 8023 4.672283 GCGCTACTGCTATACCTAGTTAGC 60.672 50.000 0.00 8.79 40.97 3.09
6042 8024 4.454847 CGCTACTGCTATACCTAGTTAGCA 59.545 45.833 14.80 14.80 46.33 3.49
6047 8029 5.961396 TGCTATACCTAGTTAGCAGTAGC 57.039 43.478 12.66 3.81 44.32 3.58
6048 8030 4.454847 TGCTATACCTAGTTAGCAGTAGCG 59.545 45.833 12.66 0.00 44.32 4.26
6049 8031 7.049768 TGCTATACCTAGTTAGCAGTAGCGC 62.050 48.000 0.00 0.00 44.32 5.92
6057 8039 2.434359 GCAGTAGCGCGGGTTCTT 60.434 61.111 8.83 0.00 0.00 2.52
6058 8040 2.740714 GCAGTAGCGCGGGTTCTTG 61.741 63.158 8.83 0.00 0.00 3.02
6059 8041 1.080093 CAGTAGCGCGGGTTCTTGA 60.080 57.895 8.83 0.00 0.00 3.02
6060 8042 0.669318 CAGTAGCGCGGGTTCTTGAA 60.669 55.000 8.83 0.00 0.00 2.69
6061 8043 0.034337 AGTAGCGCGGGTTCTTGAAA 59.966 50.000 8.83 0.00 0.00 2.69
6062 8044 0.869730 GTAGCGCGGGTTCTTGAAAA 59.130 50.000 8.83 0.00 0.00 2.29
6064 8046 0.818040 AGCGCGGGTTCTTGAAAAGT 60.818 50.000 8.83 0.00 46.34 2.66
6065 8047 0.660300 GCGCGGGTTCTTGAAAAGTG 60.660 55.000 8.83 0.00 46.34 3.16
6066 8048 0.660300 CGCGGGTTCTTGAAAAGTGC 60.660 55.000 0.00 0.00 46.34 4.40
6067 8049 0.668535 GCGGGTTCTTGAAAAGTGCT 59.331 50.000 0.00 0.00 46.34 4.40
6068 8050 1.600413 GCGGGTTCTTGAAAAGTGCTG 60.600 52.381 0.00 0.00 46.34 4.41
6069 8051 1.600413 CGGGTTCTTGAAAAGTGCTGC 60.600 52.381 0.00 0.00 46.34 5.25
6070 8052 1.683385 GGGTTCTTGAAAAGTGCTGCT 59.317 47.619 0.00 0.00 46.34 4.24
6071 8053 2.544486 GGGTTCTTGAAAAGTGCTGCTG 60.544 50.000 0.00 0.00 46.34 4.41
6072 8054 2.358898 GGTTCTTGAAAAGTGCTGCTGA 59.641 45.455 0.00 0.00 46.34 4.26
6073 8055 3.005155 GGTTCTTGAAAAGTGCTGCTGAT 59.995 43.478 0.00 0.00 46.34 2.90
6074 8056 4.216257 GGTTCTTGAAAAGTGCTGCTGATA 59.784 41.667 0.00 0.00 46.34 2.15
6075 8057 5.388944 GTTCTTGAAAAGTGCTGCTGATAG 58.611 41.667 0.00 0.00 46.34 2.08
6076 8058 4.645535 TCTTGAAAAGTGCTGCTGATAGT 58.354 39.130 0.00 0.00 46.34 2.12
6077 8059 5.793817 TCTTGAAAAGTGCTGCTGATAGTA 58.206 37.500 0.00 0.00 46.34 1.82
6078 8060 5.871524 TCTTGAAAAGTGCTGCTGATAGTAG 59.128 40.000 0.00 0.00 46.34 2.57
6079 8061 5.152623 TGAAAAGTGCTGCTGATAGTAGT 57.847 39.130 0.00 0.00 30.12 2.73
6080 8062 6.280855 TGAAAAGTGCTGCTGATAGTAGTA 57.719 37.500 0.00 0.00 30.12 1.82
6081 8063 6.697395 TGAAAAGTGCTGCTGATAGTAGTAA 58.303 36.000 0.00 0.00 30.12 2.24
6082 8064 6.813649 TGAAAAGTGCTGCTGATAGTAGTAAG 59.186 38.462 0.00 0.00 30.12 2.34
6083 8065 5.923733 AAGTGCTGCTGATAGTAGTAAGT 57.076 39.130 0.00 0.00 30.12 2.24
6084 8066 7.406031 AAAGTGCTGCTGATAGTAGTAAGTA 57.594 36.000 0.00 0.00 30.12 2.24
6085 8067 6.627395 AGTGCTGCTGATAGTAGTAAGTAG 57.373 41.667 0.00 0.00 30.12 2.57
6086 8068 5.009210 AGTGCTGCTGATAGTAGTAAGTAGC 59.991 44.000 10.72 10.72 45.27 3.58
6087 8069 5.440234 GCTGCTGATAGTAGTAAGTAGCA 57.560 43.478 12.10 11.60 44.67 3.49
6088 8070 5.833082 GCTGCTGATAGTAGTAAGTAGCAA 58.167 41.667 12.10 1.54 44.67 3.91
6089 8071 6.451393 GCTGCTGATAGTAGTAAGTAGCAAT 58.549 40.000 12.10 0.00 44.67 3.56
6090 8072 7.594714 GCTGCTGATAGTAGTAAGTAGCAATA 58.405 38.462 12.10 0.00 44.67 1.90
6091 8073 7.753132 GCTGCTGATAGTAGTAAGTAGCAATAG 59.247 40.741 12.10 5.22 44.67 1.73
6092 8074 7.594714 TGCTGATAGTAGTAAGTAGCAATAGC 58.405 38.462 9.86 0.00 36.83 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 229 3.690460 CTTGAATTGTACCCTTCCTGCT 58.310 45.455 0.00 0.00 0.00 4.24
245 255 7.268586 AGTATCTACTGCTAGTGTGGATTTTG 58.731 38.462 16.91 0.00 37.02 2.44
510 539 7.844779 AGTTGAGAAAGAGTTGGACCCTATATA 59.155 37.037 0.00 0.00 0.00 0.86
512 541 6.023603 AGTTGAGAAAGAGTTGGACCCTATA 58.976 40.000 0.00 0.00 0.00 1.31
513 542 4.846940 AGTTGAGAAAGAGTTGGACCCTAT 59.153 41.667 0.00 0.00 0.00 2.57
515 544 3.049344 AGTTGAGAAAGAGTTGGACCCT 58.951 45.455 0.00 0.00 0.00 4.34
517 546 4.563786 CCCTAGTTGAGAAAGAGTTGGACC 60.564 50.000 0.00 0.00 0.00 4.46
519 548 3.583086 CCCCTAGTTGAGAAAGAGTTGGA 59.417 47.826 0.00 0.00 0.00 3.53
520 549 3.328050 ACCCCTAGTTGAGAAAGAGTTGG 59.672 47.826 0.00 0.00 0.00 3.77
521 550 4.625607 ACCCCTAGTTGAGAAAGAGTTG 57.374 45.455 0.00 0.00 0.00 3.16
522 551 6.023603 TCATACCCCTAGTTGAGAAAGAGTT 58.976 40.000 0.00 0.00 0.00 3.01
525 554 5.657302 GTCTCATACCCCTAGTTGAGAAAGA 59.343 44.000 3.26 0.00 40.79 2.52
526 555 5.659079 AGTCTCATACCCCTAGTTGAGAAAG 59.341 44.000 3.26 0.00 40.79 2.62
527 556 5.590818 AGTCTCATACCCCTAGTTGAGAAA 58.409 41.667 3.26 0.00 40.79 2.52
529 558 4.883021 AGTCTCATACCCCTAGTTGAGA 57.117 45.455 0.00 0.00 38.84 3.27
530 559 5.766174 GTCTAGTCTCATACCCCTAGTTGAG 59.234 48.000 0.00 0.00 36.11 3.02
532 561 5.697067 AGTCTAGTCTCATACCCCTAGTTG 58.303 45.833 0.00 0.00 0.00 3.16
533 562 5.998128 AGTCTAGTCTCATACCCCTAGTT 57.002 43.478 0.00 0.00 0.00 2.24
534 563 5.998128 AAGTCTAGTCTCATACCCCTAGT 57.002 43.478 0.00 0.00 0.00 2.57
535 564 6.431852 GCTAAAGTCTAGTCTCATACCCCTAG 59.568 46.154 0.00 0.00 0.00 3.02
536 565 6.126273 TGCTAAAGTCTAGTCTCATACCCCTA 60.126 42.308 0.00 0.00 0.00 3.53
537 566 5.141910 GCTAAAGTCTAGTCTCATACCCCT 58.858 45.833 0.00 0.00 0.00 4.79
538 567 4.894114 TGCTAAAGTCTAGTCTCATACCCC 59.106 45.833 0.00 0.00 0.00 4.95
539 568 5.221283 GGTGCTAAAGTCTAGTCTCATACCC 60.221 48.000 0.00 0.00 0.00 3.69
540 569 5.360144 TGGTGCTAAAGTCTAGTCTCATACC 59.640 44.000 0.00 0.00 0.00 2.73
541 570 6.267070 GTGGTGCTAAAGTCTAGTCTCATAC 58.733 44.000 0.00 0.00 0.00 2.39
542 571 5.360144 GGTGGTGCTAAAGTCTAGTCTCATA 59.640 44.000 0.00 0.00 0.00 2.15
543 572 4.160626 GGTGGTGCTAAAGTCTAGTCTCAT 59.839 45.833 0.00 0.00 0.00 2.90
545 574 3.119065 GGGTGGTGCTAAAGTCTAGTCTC 60.119 52.174 0.00 0.00 0.00 3.36
546 575 2.832733 GGGTGGTGCTAAAGTCTAGTCT 59.167 50.000 0.00 0.00 0.00 3.24
547 576 2.565834 TGGGTGGTGCTAAAGTCTAGTC 59.434 50.000 0.00 0.00 0.00 2.59
548 577 2.616524 TGGGTGGTGCTAAAGTCTAGT 58.383 47.619 0.00 0.00 0.00 2.57
549 578 3.197766 TGATGGGTGGTGCTAAAGTCTAG 59.802 47.826 0.00 0.00 0.00 2.43
550 579 3.055385 GTGATGGGTGGTGCTAAAGTCTA 60.055 47.826 0.00 0.00 0.00 2.59
551 580 1.985159 TGATGGGTGGTGCTAAAGTCT 59.015 47.619 0.00 0.00 0.00 3.24
554 583 2.489329 CAAGTGATGGGTGGTGCTAAAG 59.511 50.000 0.00 0.00 0.00 1.85
555 584 2.513753 CAAGTGATGGGTGGTGCTAAA 58.486 47.619 0.00 0.00 0.00 1.85
558 587 1.604593 GCAAGTGATGGGTGGTGCT 60.605 57.895 0.00 0.00 0.00 4.40
559 588 1.462731 TTGCAAGTGATGGGTGGTGC 61.463 55.000 0.00 0.00 0.00 5.01
560 589 1.259609 ATTGCAAGTGATGGGTGGTG 58.740 50.000 4.94 0.00 0.00 4.17
561 590 2.014010 AATTGCAAGTGATGGGTGGT 57.986 45.000 4.94 0.00 0.00 4.16
562 591 3.328505 GAAAATTGCAAGTGATGGGTGG 58.671 45.455 4.94 0.00 0.00 4.61
563 592 3.328505 GGAAAATTGCAAGTGATGGGTG 58.671 45.455 4.94 0.00 0.00 4.61
564 593 2.302733 GGGAAAATTGCAAGTGATGGGT 59.697 45.455 4.94 0.00 0.00 4.51
565 594 2.568509 AGGGAAAATTGCAAGTGATGGG 59.431 45.455 4.94 0.00 0.00 4.00
566 595 3.967332 AGGGAAAATTGCAAGTGATGG 57.033 42.857 4.94 0.00 0.00 3.51
578 607 1.047801 AAAGTGGCGCAAGGGAAAAT 58.952 45.000 10.83 0.00 38.28 1.82
579 608 1.693627 TAAAGTGGCGCAAGGGAAAA 58.306 45.000 10.83 0.00 38.28 2.29
581 610 1.202830 TCTTAAAGTGGCGCAAGGGAA 60.203 47.619 10.83 0.00 38.28 3.97
582 611 0.398696 TCTTAAAGTGGCGCAAGGGA 59.601 50.000 10.83 0.00 38.28 4.20
584 613 3.876914 TGATATCTTAAAGTGGCGCAAGG 59.123 43.478 10.83 0.00 38.28 3.61
585 614 5.484173 TTGATATCTTAAAGTGGCGCAAG 57.516 39.130 10.83 2.68 43.44 4.01
586 615 5.888691 TTTGATATCTTAAAGTGGCGCAA 57.111 34.783 10.83 0.00 0.00 4.85
587 616 5.888691 TTTTGATATCTTAAAGTGGCGCA 57.111 34.783 10.83 0.00 0.00 6.09
588 617 7.755582 AATTTTTGATATCTTAAAGTGGCGC 57.244 32.000 0.00 0.00 0.00 6.53
601 630 9.506018 GCTTGGCCCATTAATAATTTTTGATAT 57.494 29.630 0.00 0.00 0.00 1.63
602 631 7.936301 GGCTTGGCCCATTAATAATTTTTGATA 59.064 33.333 0.00 0.00 44.06 2.15
604 633 6.118852 GGCTTGGCCCATTAATAATTTTTGA 58.881 36.000 0.00 0.00 44.06 2.69
605 634 6.375945 GGCTTGGCCCATTAATAATTTTTG 57.624 37.500 0.00 0.00 44.06 2.44
622 651 5.930837 TGGTTAGAAATAAATGGGCTTGG 57.069 39.130 0.00 0.00 0.00 3.61
623 652 6.980397 GTGATGGTTAGAAATAAATGGGCTTG 59.020 38.462 0.00 0.00 0.00 4.01
625 654 5.598417 GGTGATGGTTAGAAATAAATGGGCT 59.402 40.000 0.00 0.00 0.00 5.19
627 656 5.009610 CCGGTGATGGTTAGAAATAAATGGG 59.990 44.000 0.00 0.00 0.00 4.00
628 657 5.592688 ACCGGTGATGGTTAGAAATAAATGG 59.407 40.000 6.12 0.00 39.99 3.16
643 672 0.108329 AAAGCTACGGACCGGTGATG 60.108 55.000 14.63 3.27 0.00 3.07
846 878 4.097589 GCAAGGAAGAAAATGCTAGCTGAT 59.902 41.667 17.23 0.00 35.93 2.90
847 879 3.441572 GCAAGGAAGAAAATGCTAGCTGA 59.558 43.478 17.23 0.00 35.93 4.26
852 884 6.892658 TTTGTAGCAAGGAAGAAAATGCTA 57.107 33.333 2.44 2.44 46.61 3.49
854 886 7.315890 AGTATTTGTAGCAAGGAAGAAAATGC 58.684 34.615 0.00 0.00 39.06 3.56
855 887 7.970614 GGAGTATTTGTAGCAAGGAAGAAAATG 59.029 37.037 0.00 0.00 0.00 2.32
866 898 2.094390 ACGCGAGGAGTATTTGTAGCAA 60.094 45.455 15.93 0.00 0.00 3.91
934 966 3.928992 TGATCGACTTGATTGTGAGCTTC 59.071 43.478 0.00 0.00 37.47 3.86
979 1011 0.031178 CTGCTGGCAACGAAGCTTTT 59.969 50.000 0.00 0.00 40.21 2.27
1269 1360 1.766496 AGGAAGTTGTCGTCCAGGAAA 59.234 47.619 0.00 0.00 43.07 3.13
1407 1498 2.214216 ACGCACCAGCCACTCCTTA 61.214 57.895 0.00 0.00 37.52 2.69
1480 1572 9.748708 AATTACACAACTGTACGTAGACTTTTA 57.251 29.630 0.00 0.00 32.28 1.52
1481 1573 8.652810 AATTACACAACTGTACGTAGACTTTT 57.347 30.769 0.00 0.00 32.28 2.27
1482 1574 9.403110 CTAATTACACAACTGTACGTAGACTTT 57.597 33.333 0.00 0.00 32.28 2.66
1483 1575 7.540055 GCTAATTACACAACTGTACGTAGACTT 59.460 37.037 0.00 0.00 32.28 3.01
1484 1576 7.025963 GCTAATTACACAACTGTACGTAGACT 58.974 38.462 0.00 0.00 32.28 3.24
1485 1577 6.252228 GGCTAATTACACAACTGTACGTAGAC 59.748 42.308 0.00 0.00 32.28 2.59
1486 1578 6.151648 AGGCTAATTACACAACTGTACGTAGA 59.848 38.462 0.00 0.00 32.28 2.59
1487 1579 6.327934 AGGCTAATTACACAACTGTACGTAG 58.672 40.000 0.00 0.00 32.28 3.51
1488 1580 6.271488 AGGCTAATTACACAACTGTACGTA 57.729 37.500 0.00 0.00 32.28 3.57
1490 1582 6.810182 AGTTAGGCTAATTACACAACTGTACG 59.190 38.462 10.65 0.00 32.28 3.67
1503 1595 7.621796 CGGAGGGATTAATAGTTAGGCTAATT 58.378 38.462 10.65 8.93 32.72 1.40
1504 1596 6.351966 GCGGAGGGATTAATAGTTAGGCTAAT 60.352 42.308 10.65 2.68 32.72 1.73
1506 1598 4.465305 GCGGAGGGATTAATAGTTAGGCTA 59.535 45.833 0.00 0.00 0.00 3.93
1507 1599 3.261137 GCGGAGGGATTAATAGTTAGGCT 59.739 47.826 0.00 0.00 0.00 4.58
1508 1600 3.597255 GCGGAGGGATTAATAGTTAGGC 58.403 50.000 0.00 0.00 0.00 3.93
1509 1601 3.055312 GGGCGGAGGGATTAATAGTTAGG 60.055 52.174 0.00 0.00 0.00 2.69
1512 1604 1.703513 GGGGCGGAGGGATTAATAGTT 59.296 52.381 0.00 0.00 0.00 2.24
1515 1607 1.833787 GCGGGGCGGAGGGATTAATA 61.834 60.000 0.00 0.00 0.00 0.98
1516 1608 3.157680 CGGGGCGGAGGGATTAAT 58.842 61.111 0.00 0.00 0.00 1.40
1517 1609 3.868985 GCGGGGCGGAGGGATTAA 61.869 66.667 0.00 0.00 0.00 1.40
1523 1615 4.918201 GAATCAGCGGGGCGGAGG 62.918 72.222 0.00 0.00 36.09 4.30
1524 1616 4.918201 GGAATCAGCGGGGCGGAG 62.918 72.222 0.00 0.00 36.09 4.63
1534 1626 1.077212 CCCACCCAGCTGGAATCAG 60.077 63.158 34.91 19.00 43.64 2.90
1535 1627 2.615465 CCCCACCCAGCTGGAATCA 61.615 63.158 34.91 0.00 37.39 2.57
1548 1640 0.853530 AATTATGAGAGGGGCCCCAC 59.146 55.000 42.48 36.18 38.92 4.61
1549 1641 1.499007 GAAATTATGAGAGGGGCCCCA 59.501 52.381 42.48 23.33 38.92 4.96
1550 1642 1.203063 GGAAATTATGAGAGGGGCCCC 60.203 57.143 35.90 35.90 0.00 5.80
1551 1643 1.783365 AGGAAATTATGAGAGGGGCCC 59.217 52.381 17.12 17.12 0.00 5.80
1552 1644 2.224892 GGAGGAAATTATGAGAGGGGCC 60.225 54.545 0.00 0.00 0.00 5.80
1556 1648 5.994250 TCAGTTGGAGGAAATTATGAGAGG 58.006 41.667 0.00 0.00 0.00 3.69
1557 1649 7.928307 TTTCAGTTGGAGGAAATTATGAGAG 57.072 36.000 0.00 0.00 0.00 3.20
1580 1672 3.769300 CCTAATGGCTTAGGTGGCTTTTT 59.231 43.478 12.09 0.00 46.19 1.94
1581 1673 3.365472 CCTAATGGCTTAGGTGGCTTTT 58.635 45.455 12.09 0.00 46.19 2.27
1582 1674 3.018423 CCTAATGGCTTAGGTGGCTTT 57.982 47.619 12.09 0.00 46.19 3.51
1583 1675 2.736670 CCTAATGGCTTAGGTGGCTT 57.263 50.000 12.09 0.00 46.19 4.35
1590 1682 7.838771 AACGTAAAGTAACCTAATGGCTTAG 57.161 36.000 0.00 0.00 36.63 2.18
1591 1683 7.877097 TCAAACGTAAAGTAACCTAATGGCTTA 59.123 33.333 0.00 0.00 36.63 3.09
1593 1685 6.232692 TCAAACGTAAAGTAACCTAATGGCT 58.767 36.000 0.00 0.00 36.63 4.75
1595 1687 9.977762 GTAATCAAACGTAAAGTAACCTAATGG 57.022 33.333 0.00 0.00 39.83 3.16
1597 1689 9.723601 TGGTAATCAAACGTAAAGTAACCTAAT 57.276 29.630 0.00 0.00 0.00 1.73
1598 1690 9.553064 TTGGTAATCAAACGTAAAGTAACCTAA 57.447 29.630 0.00 0.00 31.46 2.69
1599 1691 9.206870 CTTGGTAATCAAACGTAAAGTAACCTA 57.793 33.333 0.00 0.00 34.56 3.08
1601 1693 7.864686 ACTTGGTAATCAAACGTAAAGTAACC 58.135 34.615 0.00 0.00 34.56 2.85
1604 1696 8.761575 CCTACTTGGTAATCAAACGTAAAGTA 57.238 34.615 0.00 0.00 34.56 2.24
1605 1697 7.662604 CCTACTTGGTAATCAAACGTAAAGT 57.337 36.000 0.00 0.00 34.56 2.66
1615 1707 9.426144 AGCAATGCTACACCTACTTGGTAATCA 62.426 40.741 5.69 0.00 42.13 2.57
1617 1709 5.339200 AGCAATGCTACACCTACTTGGTAAT 60.339 40.000 5.69 0.00 42.13 1.89
1618 1710 4.019681 AGCAATGCTACACCTACTTGGTAA 60.020 41.667 5.69 0.00 42.13 2.85
1619 1711 3.517901 AGCAATGCTACACCTACTTGGTA 59.482 43.478 5.69 0.00 42.13 3.25
1620 1712 2.305927 AGCAATGCTACACCTACTTGGT 59.694 45.455 5.69 0.00 43.99 3.67
1622 1714 2.604914 CGAGCAATGCTACACCTACTTG 59.395 50.000 8.12 0.00 39.88 3.16
1623 1715 2.233922 ACGAGCAATGCTACACCTACTT 59.766 45.455 8.12 0.00 39.88 2.24
1624 1716 1.825474 ACGAGCAATGCTACACCTACT 59.175 47.619 8.12 0.00 39.88 2.57
1625 1717 2.295253 ACGAGCAATGCTACACCTAC 57.705 50.000 8.12 0.00 39.88 3.18
1626 1718 4.178540 GTTAACGAGCAATGCTACACCTA 58.821 43.478 8.12 0.00 39.88 3.08
1627 1719 3.000727 GTTAACGAGCAATGCTACACCT 58.999 45.455 8.12 0.00 39.88 4.00
1629 1721 4.148891 GTTGTTAACGAGCAATGCTACAC 58.851 43.478 8.12 1.31 39.88 2.90
1630 1722 3.187637 GGTTGTTAACGAGCAATGCTACA 59.812 43.478 18.20 5.62 39.88 2.74
1631 1723 3.435671 AGGTTGTTAACGAGCAATGCTAC 59.564 43.478 23.52 2.51 39.88 3.58
1632 1724 3.670625 AGGTTGTTAACGAGCAATGCTA 58.329 40.909 23.52 0.00 39.88 3.49
1633 1725 2.504367 AGGTTGTTAACGAGCAATGCT 58.496 42.857 23.52 7.79 43.88 3.79
1635 1727 6.097356 TCTACTAGGTTGTTAACGAGCAATG 58.903 40.000 23.52 15.58 0.00 2.82
1636 1728 6.276832 TCTACTAGGTTGTTAACGAGCAAT 57.723 37.500 23.52 12.49 0.00 3.56
1637 1729 5.710513 TCTACTAGGTTGTTAACGAGCAA 57.289 39.130 23.52 8.07 0.00 3.91
1639 1731 5.515626 CACATCTACTAGGTTGTTAACGAGC 59.484 44.000 15.87 15.87 0.00 5.03
1640 1732 6.618811 ACACATCTACTAGGTTGTTAACGAG 58.381 40.000 0.26 0.00 0.00 4.18
1641 1733 6.579666 ACACATCTACTAGGTTGTTAACGA 57.420 37.500 0.26 0.00 0.00 3.85
1642 1734 6.467047 CGTACACATCTACTAGGTTGTTAACG 59.533 42.308 0.26 1.51 0.00 3.18
1644 1736 7.040478 ACACGTACACATCTACTAGGTTGTTAA 60.040 37.037 0.00 0.00 0.00 2.01
1645 1737 6.430925 ACACGTACACATCTACTAGGTTGTTA 59.569 38.462 0.00 0.00 0.00 2.41
1646 1738 5.242393 ACACGTACACATCTACTAGGTTGTT 59.758 40.000 0.00 0.00 0.00 2.83
1647 1739 4.763793 ACACGTACACATCTACTAGGTTGT 59.236 41.667 0.00 0.00 0.00 3.32
1649 1741 5.005740 TCACACGTACACATCTACTAGGTT 58.994 41.667 0.00 0.00 0.00 3.50
1650 1742 4.582869 TCACACGTACACATCTACTAGGT 58.417 43.478 0.00 0.00 0.00 3.08
1651 1743 5.511571 CATCACACGTACACATCTACTAGG 58.488 45.833 0.00 0.00 0.00 3.02
1652 1744 4.970611 GCATCACACGTACACATCTACTAG 59.029 45.833 0.00 0.00 0.00 2.57
1929 2027 3.886044 CATGATCATGCACATGGGC 57.114 52.632 22.20 14.67 39.79 5.36
1938 2036 1.357690 GCACACGGGCATGATCATG 59.642 57.895 28.04 28.04 41.60 3.07
1949 2047 2.173669 GGACGGATCATGCACACGG 61.174 63.158 0.00 0.00 0.00 4.94
1952 2050 0.036858 TTTCGGACGGATCATGCACA 60.037 50.000 0.00 0.00 0.00 4.57
1953 2051 0.652592 CTTTCGGACGGATCATGCAC 59.347 55.000 0.00 0.00 0.00 4.57
1968 2066 7.587757 CCATGAAAAATTATCGATCCGTCTTTC 59.412 37.037 0.00 7.02 0.00 2.62
2057 2163 1.881973 ACGCATGTGCAAGTCTTCAAT 59.118 42.857 6.08 0.00 42.21 2.57
2074 2180 6.235642 CAATCAACATTTCTATTTGCAACGC 58.764 36.000 0.00 0.00 0.00 4.84
2115 2221 1.173043 TGCGGGGCTTGAATTACTTG 58.827 50.000 0.00 0.00 0.00 3.16
2219 2325 8.515414 GTTAAAGTAAAGAATGCTGATTGGAGT 58.485 33.333 0.00 0.00 0.00 3.85
2414 2883 4.566545 ATTCTTGCACGATTCACAAACA 57.433 36.364 0.00 0.00 0.00 2.83
2417 2886 5.445806 CGACATATTCTTGCACGATTCACAA 60.446 40.000 0.00 0.00 0.00 3.33
2426 2895 2.159430 TGCACACGACATATTCTTGCAC 59.841 45.455 0.00 0.00 33.72 4.57
2624 3122 4.749099 GCTACAGCTAGAATTCATGGAGTG 59.251 45.833 8.44 0.07 38.21 3.51
2680 3180 6.211986 TCTGTATTTCCCGTAAAAAGGAGAGA 59.788 38.462 0.00 0.00 32.57 3.10
2686 3186 8.726870 TCCTTATCTGTATTTCCCGTAAAAAG 57.273 34.615 0.00 0.00 0.00 2.27
2852 3359 5.006941 GTCGTCTGTTCTATAGAGGTCAGAC 59.993 48.000 29.80 29.80 42.90 3.51
2857 3375 4.200874 CCTGTCGTCTGTTCTATAGAGGT 58.799 47.826 2.02 0.00 33.18 3.85
2858 3376 3.003897 GCCTGTCGTCTGTTCTATAGAGG 59.996 52.174 2.02 0.00 0.00 3.69
2907 3728 1.098050 GCAACAACTGGGCCTATCAG 58.902 55.000 4.53 4.00 38.16 2.90
2933 3754 4.682787 GTTGTTGAAAAGAAAGGTCTGGG 58.317 43.478 0.00 0.00 33.05 4.45
2984 3807 0.109342 ACTTGTGGCAGTTCCTCTGG 59.891 55.000 0.00 0.00 43.78 3.86
2990 3813 6.792326 AGTTTAACTTAACTTGTGGCAGTTC 58.208 36.000 0.00 0.00 38.07 3.01
3046 3885 1.852280 GCGCAGTTTTTGTTGAGGTTC 59.148 47.619 0.30 0.00 0.00 3.62
3075 3914 2.358582 TCCAAACTGTGATGTGCAAGTG 59.641 45.455 0.00 0.00 0.00 3.16
3118 3959 5.410439 AGCTATCGTAAAACAACCGAACAAT 59.590 36.000 0.00 0.00 33.89 2.71
3124 3965 4.626604 TGGTTAGCTATCGTAAAACAACCG 59.373 41.667 0.00 0.00 37.57 4.44
3276 4131 6.040247 TGTGTAGATATGCCAAGTTAGTTCG 58.960 40.000 0.00 0.00 0.00 3.95
3305 4160 4.926832 TGTGAAAGTTCGATATTTCTGCGA 59.073 37.500 18.30 0.00 36.57 5.10
3310 4165 5.445540 GGTCGGTGTGAAAGTTCGATATTTC 60.446 44.000 13.27 13.27 36.24 2.17
3318 4173 1.202604 TCAGGGTCGGTGTGAAAGTTC 60.203 52.381 0.00 0.00 0.00 3.01
3330 4185 1.068333 CAAGCACCAAATTCAGGGTCG 60.068 52.381 2.37 0.00 34.45 4.79
3346 4201 1.683385 AGGAAACTCTGCCAAACAAGC 59.317 47.619 0.00 0.00 32.90 4.01
3369 4538 0.179067 GGGTTGACCACGACAGAACA 60.179 55.000 2.12 0.00 39.85 3.18
3441 4610 2.164624 GCGATATATGACGGGCTTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
3517 4686 4.075682 CCCCGGCCAAAAACAAAATAAAT 58.924 39.130 2.24 0.00 0.00 1.40
3526 4695 1.365999 CTGTTCCCCGGCCAAAAAC 59.634 57.895 2.24 1.73 0.00 2.43
3602 4820 8.707796 TCTTATATTATGAAACGAGAGGGAGT 57.292 34.615 0.00 0.00 0.00 3.85
3603 4821 7.757624 GCTCTTATATTATGAAACGAGAGGGAG 59.242 40.741 0.00 0.00 32.20 4.30
3605 4823 6.528423 CGCTCTTATATTATGAAACGAGAGGG 59.472 42.308 0.00 0.00 36.88 4.30
3606 4824 7.085116 ACGCTCTTATATTATGAAACGAGAGG 58.915 38.462 0.00 0.00 32.20 3.69
3607 4825 8.508800 AACGCTCTTATATTATGAAACGAGAG 57.491 34.615 0.00 0.00 34.12 3.20
3608 4826 8.867112 AAACGCTCTTATATTATGAAACGAGA 57.133 30.769 0.00 0.00 0.00 4.04
3609 4827 9.916397 AAAAACGCTCTTATATTATGAAACGAG 57.084 29.630 0.00 0.00 0.00 4.18
3610 4828 9.697250 CAAAAACGCTCTTATATTATGAAACGA 57.303 29.630 0.00 0.00 0.00 3.85
3611 4829 9.697250 TCAAAAACGCTCTTATATTATGAAACG 57.303 29.630 0.00 0.00 0.00 3.60
3614 4832 9.982291 GTGTCAAAAACGCTCTTATATTATGAA 57.018 29.630 0.00 0.00 35.42 2.57
3615 4833 9.378551 AGTGTCAAAAACGCTCTTATATTATGA 57.621 29.630 0.00 0.00 45.69 2.15
3618 4836 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
3619 4837 8.542497 TGTAGTGTCAAAAACGCTCTTATATT 57.458 30.769 0.00 0.00 45.69 1.28
3620 4838 8.542497 TTGTAGTGTCAAAAACGCTCTTATAT 57.458 30.769 0.00 0.00 45.69 0.86
3621 4839 7.949903 TTGTAGTGTCAAAAACGCTCTTATA 57.050 32.000 0.00 0.00 45.69 0.98
3622 4840 6.854496 TTGTAGTGTCAAAAACGCTCTTAT 57.146 33.333 0.00 0.00 45.69 1.73
3623 4841 6.665474 TTTGTAGTGTCAAAAACGCTCTTA 57.335 33.333 0.00 0.00 45.69 2.10
3624 4842 5.554822 TTTGTAGTGTCAAAAACGCTCTT 57.445 34.783 0.00 0.00 45.69 2.85
3625 4843 5.554822 TTTTGTAGTGTCAAAAACGCTCT 57.445 34.783 2.75 0.00 45.69 4.09
3632 4850 8.690680 ATAAAAGCGTTTTTGTAGTGTCAAAA 57.309 26.923 18.77 0.00 42.85 2.44
3633 4851 9.953697 ATATAAAAGCGTTTTTGTAGTGTCAAA 57.046 25.926 18.77 0.00 37.12 2.69
3634 4852 9.953697 AATATAAAAGCGTTTTTGTAGTGTCAA 57.046 25.926 18.77 0.00 37.12 3.18
3638 4856 9.498307 CCCTAATATAAAAGCGTTTTTGTAGTG 57.502 33.333 18.77 10.55 37.12 2.74
3639 4857 8.680001 CCCCTAATATAAAAGCGTTTTTGTAGT 58.320 33.333 18.77 17.06 37.12 2.73
3640 4858 8.895737 TCCCCTAATATAAAAGCGTTTTTGTAG 58.104 33.333 18.77 13.42 37.12 2.74
3641 4859 8.676401 GTCCCCTAATATAAAAGCGTTTTTGTA 58.324 33.333 18.77 16.44 37.12 2.41
3642 4860 7.541162 GTCCCCTAATATAAAAGCGTTTTTGT 58.459 34.615 18.77 14.86 37.12 2.83
3643 4861 6.689669 CGTCCCCTAATATAAAAGCGTTTTTG 59.310 38.462 18.77 2.28 37.12 2.44
3644 4862 6.183360 CCGTCCCCTAATATAAAAGCGTTTTT 60.183 38.462 14.50 14.50 39.69 1.94
3645 4863 5.297527 CCGTCCCCTAATATAAAAGCGTTTT 59.702 40.000 2.19 1.29 36.67 2.43
3646 4864 4.818005 CCGTCCCCTAATATAAAAGCGTTT 59.182 41.667 2.53 2.53 0.00 3.60
3647 4865 4.101430 TCCGTCCCCTAATATAAAAGCGTT 59.899 41.667 0.00 0.00 0.00 4.84
3648 4866 3.642848 TCCGTCCCCTAATATAAAAGCGT 59.357 43.478 0.00 0.00 0.00 5.07
3649 4867 4.243270 CTCCGTCCCCTAATATAAAAGCG 58.757 47.826 0.00 0.00 0.00 4.68
3650 4868 4.565028 CCCTCCGTCCCCTAATATAAAAGC 60.565 50.000 0.00 0.00 0.00 3.51
3651 4869 4.842380 TCCCTCCGTCCCCTAATATAAAAG 59.158 45.833 0.00 0.00 0.00 2.27
3652 4870 4.830138 TCCCTCCGTCCCCTAATATAAAA 58.170 43.478 0.00 0.00 0.00 1.52
3653 4871 4.140615 ACTCCCTCCGTCCCCTAATATAAA 60.141 45.833 0.00 0.00 0.00 1.40
3654 4872 3.403737 ACTCCCTCCGTCCCCTAATATAA 59.596 47.826 0.00 0.00 0.00 0.98
3655 4873 2.998910 ACTCCCTCCGTCCCCTAATATA 59.001 50.000 0.00 0.00 0.00 0.86
3656 4874 1.793902 ACTCCCTCCGTCCCCTAATAT 59.206 52.381 0.00 0.00 0.00 1.28
3657 4875 1.238615 ACTCCCTCCGTCCCCTAATA 58.761 55.000 0.00 0.00 0.00 0.98
3658 4876 1.133231 GTACTCCCTCCGTCCCCTAAT 60.133 57.143 0.00 0.00 0.00 1.73
3659 4877 0.259938 GTACTCCCTCCGTCCCCTAA 59.740 60.000 0.00 0.00 0.00 2.69
3660 4878 0.625683 AGTACTCCCTCCGTCCCCTA 60.626 60.000 0.00 0.00 0.00 3.53
3661 4879 0.625683 TAGTACTCCCTCCGTCCCCT 60.626 60.000 0.00 0.00 0.00 4.79
3662 4880 0.482006 ATAGTACTCCCTCCGTCCCC 59.518 60.000 0.00 0.00 0.00 4.81
3663 4881 3.735720 ATATAGTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
3666 4884 9.517868 GCATATATAATATAGTACTCCCTCCGT 57.482 37.037 0.00 0.00 0.00 4.69
3667 4885 8.958506 GGCATATATAATATAGTACTCCCTCCG 58.041 40.741 0.00 0.00 0.00 4.63
3668 4886 9.257428 GGGCATATATAATATAGTACTCCCTCC 57.743 40.741 0.00 0.00 0.00 4.30
3669 4887 9.824216 TGGGCATATATAATATAGTACTCCCTC 57.176 37.037 0.00 0.00 0.00 4.30
3692 4910 7.890184 CAGAATGACGTACCAACAATAATTGGG 60.890 40.741 9.25 0.00 46.82 4.12
3782 5000 3.801114 ACCAACTTCAAGGTTTTCAGC 57.199 42.857 0.00 0.00 33.39 4.26
3808 5026 4.724399 TCACCAAGTCAAAATCCAGCTAA 58.276 39.130 0.00 0.00 0.00 3.09
3853 5073 4.826274 ATAATGCATACTACTCGCCCAT 57.174 40.909 0.00 0.00 0.00 4.00
3890 5119 7.007313 GTAGTCAGAAGCACACTACTAGTAG 57.993 44.000 25.30 25.30 39.55 2.57
3891 5120 6.981762 GTAGTCAGAAGCACACTACTAGTA 57.018 41.667 1.89 1.89 39.55 1.82
3892 5121 5.883503 GTAGTCAGAAGCACACTACTAGT 57.116 43.478 0.00 0.00 39.55 2.57
3896 5125 4.924462 GGAAAGTAGTCAGAAGCACACTAC 59.076 45.833 0.00 0.00 41.91 2.73
3921 5150 4.460683 GTCGTACGCATGCCCCCA 62.461 66.667 13.15 0.00 0.00 4.96
3949 5178 9.490379 TCTCGCTTTCTTTTAGTTATTCTTCTT 57.510 29.630 0.00 0.00 0.00 2.52
3950 5179 9.490379 TTCTCGCTTTCTTTTAGTTATTCTTCT 57.510 29.630 0.00 0.00 0.00 2.85
3951 5180 9.531412 GTTCTCGCTTTCTTTTAGTTATTCTTC 57.469 33.333 0.00 0.00 0.00 2.87
3952 5181 8.221766 CGTTCTCGCTTTCTTTTAGTTATTCTT 58.778 33.333 0.00 0.00 0.00 2.52
3953 5182 7.384387 ACGTTCTCGCTTTCTTTTAGTTATTCT 59.616 33.333 0.00 0.00 41.18 2.40
3954 5183 7.508134 ACGTTCTCGCTTTCTTTTAGTTATTC 58.492 34.615 0.00 0.00 41.18 1.75
3955 5184 7.417496 ACGTTCTCGCTTTCTTTTAGTTATT 57.583 32.000 0.00 0.00 41.18 1.40
3956 5185 7.170320 TCAACGTTCTCGCTTTCTTTTAGTTAT 59.830 33.333 0.00 0.00 41.18 1.89
3957 5186 6.476380 TCAACGTTCTCGCTTTCTTTTAGTTA 59.524 34.615 0.00 0.00 41.18 2.24
3958 5187 5.292589 TCAACGTTCTCGCTTTCTTTTAGTT 59.707 36.000 0.00 0.00 41.18 2.24
4050 5304 2.038557 AGTCTGCGTTGGTTACCTGAAT 59.961 45.455 2.07 0.00 0.00 2.57
4059 5313 1.333177 AGAAGAGAGTCTGCGTTGGT 58.667 50.000 0.00 0.00 0.00 3.67
4090 5344 8.992073 CCTTCCAATTTGTTTCCTTTCTTATTG 58.008 33.333 0.00 0.00 0.00 1.90
4127 5381 6.566564 CGACAATAAAATGACTTGAGTGCTGT 60.567 38.462 0.00 0.00 0.00 4.40
4170 5424 2.162008 GTCGTTGGGCGCCTAAATTAAA 59.838 45.455 28.04 8.07 41.07 1.52
4185 5439 5.986004 ACTTTCTAAAACAGGAGTCGTTG 57.014 39.130 0.00 0.00 0.00 4.10
4212 5811 5.018809 TGCATTCTTTTGAATAGGCCTTCT 58.981 37.500 12.58 0.00 46.51 2.85
4356 5967 3.319122 GGACAAAGTTCAGCCATTTCAGT 59.681 43.478 0.00 0.00 0.00 3.41
4359 5970 3.057245 GGAGGACAAAGTTCAGCCATTTC 60.057 47.826 0.00 0.00 0.00 2.17
4506 6117 8.177456 AGAGAGATAGAGAGAGAGAGTATACCA 58.823 40.741 0.00 0.00 0.00 3.25
4525 6136 3.257375 GCATGCATGAGAGAGAGAGAGAT 59.743 47.826 30.64 0.00 0.00 2.75
4553 6164 8.190784 CCAAATGAACTGTTAGAAGTTGAAACT 58.809 33.333 10.30 0.00 40.48 2.66
4554 6165 7.973944 ACCAAATGAACTGTTAGAAGTTGAAAC 59.026 33.333 10.30 0.00 40.48 2.78
4600 6458 2.036556 AAACATCGCTTTTCGCTGTG 57.963 45.000 0.00 0.00 45.47 3.66
4679 6537 2.499827 GGTGCTCCCTACTAGGCCG 61.500 68.421 0.00 0.00 32.73 6.13
4699 6557 1.257750 ACCGCATGTGCTGGACTAGA 61.258 55.000 18.09 0.00 37.85 2.43
4735 6593 6.071391 GGTCCATGATTTTTCCTAGCTTTTCA 60.071 38.462 0.00 0.00 0.00 2.69
4765 6721 2.640184 GTGGCATACTTACCCTCCAAC 58.360 52.381 0.00 0.00 0.00 3.77
4888 6844 1.902508 ACATCATCCACGAGGTTGAGT 59.097 47.619 16.20 11.80 44.57 3.41
5089 7045 7.595819 ATTACACTAGATCTTCCCTTCTCTG 57.404 40.000 0.00 0.00 0.00 3.35
5090 7046 8.507761 ACTATTACACTAGATCTTCCCTTCTCT 58.492 37.037 0.00 0.00 0.00 3.10
5133 7089 4.381411 TCAACATGTACATCCACGTTTCA 58.619 39.130 5.07 0.00 0.00 2.69
5134 7090 5.323900 CATCAACATGTACATCCACGTTTC 58.676 41.667 5.07 0.00 0.00 2.78
5135 7091 4.155826 CCATCAACATGTACATCCACGTTT 59.844 41.667 5.07 0.00 0.00 3.60
5190 7147 1.975471 AACGAATTAGGGAAGGGGGA 58.025 50.000 0.00 0.00 0.00 4.81
5343 7302 3.461085 AGGTGGCAATGGATCTCACTATT 59.539 43.478 0.00 0.00 0.00 1.73
5519 7480 5.836358 AGCAGGACATAAACCCTAACAAAAA 59.164 36.000 0.00 0.00 0.00 1.94
5738 7720 3.361414 GCCGATGAAGAGTAACGTAGAC 58.639 50.000 0.00 0.00 0.00 2.59
5786 7768 1.177256 TCGTCCTAAGGCCCGATAGC 61.177 60.000 0.00 0.00 0.00 2.97
5791 7773 1.067582 GTCATCGTCCTAAGGCCCG 59.932 63.158 0.00 0.00 0.00 6.13
5913 7895 5.046807 TCAAGCACTACTACTAGGGTTTTCC 60.047 44.000 0.00 0.00 39.75 3.13
5914 7896 6.034161 TCAAGCACTACTACTAGGGTTTTC 57.966 41.667 0.00 0.00 24.69 2.29
5915 7897 6.429521 TTCAAGCACTACTACTAGGGTTTT 57.570 37.500 0.00 0.00 24.69 2.43
5916 7898 6.429521 TTTCAAGCACTACTACTAGGGTTT 57.570 37.500 0.00 0.00 27.19 3.27
5917 7899 6.622427 ATTTCAAGCACTACTACTAGGGTT 57.378 37.500 0.00 0.00 0.00 4.11
5918 7900 7.687103 GCATATTTCAAGCACTACTACTAGGGT 60.687 40.741 0.00 0.00 0.00 4.34
5919 7901 6.647067 GCATATTTCAAGCACTACTACTAGGG 59.353 42.308 0.00 0.00 0.00 3.53
5920 7902 7.437748 AGCATATTTCAAGCACTACTACTAGG 58.562 38.462 0.00 0.00 0.00 3.02
5921 7903 9.619316 CTAGCATATTTCAAGCACTACTACTAG 57.381 37.037 0.00 0.00 0.00 2.57
5922 7904 9.132923 ACTAGCATATTTCAAGCACTACTACTA 57.867 33.333 0.00 0.00 0.00 1.82
5923 7905 8.012957 ACTAGCATATTTCAAGCACTACTACT 57.987 34.615 0.00 0.00 0.00 2.57
5924 7906 9.400638 CTACTAGCATATTTCAAGCACTACTAC 57.599 37.037 0.00 0.00 0.00 2.73
5925 7907 9.132923 ACTACTAGCATATTTCAAGCACTACTA 57.867 33.333 0.00 0.00 0.00 1.82
5926 7908 8.012957 ACTACTAGCATATTTCAAGCACTACT 57.987 34.615 0.00 0.00 0.00 2.57
5927 7909 9.400638 CTACTACTAGCATATTTCAAGCACTAC 57.599 37.037 0.00 0.00 0.00 2.73
5928 7910 8.082852 GCTACTACTAGCATATTTCAAGCACTA 58.917 37.037 0.00 0.00 44.45 2.74
5929 7911 6.926272 GCTACTACTAGCATATTTCAAGCACT 59.074 38.462 0.00 0.00 44.45 4.40
5930 7912 6.129062 CGCTACTACTAGCATATTTCAAGCAC 60.129 42.308 2.85 0.00 45.22 4.40
5931 7913 5.920840 CGCTACTACTAGCATATTTCAAGCA 59.079 40.000 2.85 0.00 45.22 3.91
5932 7914 5.164041 GCGCTACTACTAGCATATTTCAAGC 60.164 44.000 0.00 0.00 45.22 4.01
5933 7915 6.088749 CAGCGCTACTACTAGCATATTTCAAG 59.911 42.308 10.99 0.00 45.22 3.02
5934 7916 5.920840 CAGCGCTACTACTAGCATATTTCAA 59.079 40.000 10.99 0.00 45.22 2.69
5935 7917 5.461526 CAGCGCTACTACTAGCATATTTCA 58.538 41.667 10.99 0.00 45.22 2.69
5936 7918 4.859798 CCAGCGCTACTACTAGCATATTTC 59.140 45.833 10.99 0.00 45.22 2.17
5937 7919 4.281182 ACCAGCGCTACTACTAGCATATTT 59.719 41.667 10.99 0.00 45.22 1.40
5938 7920 3.827302 ACCAGCGCTACTACTAGCATATT 59.173 43.478 10.99 0.00 45.22 1.28
5939 7921 3.422796 ACCAGCGCTACTACTAGCATAT 58.577 45.455 10.99 0.00 45.22 1.78
5940 7922 2.860009 ACCAGCGCTACTACTAGCATA 58.140 47.619 10.99 0.00 45.22 3.14
5941 7923 1.693627 ACCAGCGCTACTACTAGCAT 58.306 50.000 10.99 0.00 45.22 3.79
5942 7924 2.219458 CTACCAGCGCTACTACTAGCA 58.781 52.381 10.99 0.00 45.22 3.49
5943 7925 1.069091 GCTACCAGCGCTACTACTAGC 60.069 57.143 10.99 11.97 41.97 3.42
5944 7926 2.219458 TGCTACCAGCGCTACTACTAG 58.781 52.381 10.99 5.65 46.26 2.57
5945 7927 2.219458 CTGCTACCAGCGCTACTACTA 58.781 52.381 10.99 0.00 46.26 1.82
5946 7928 1.025812 CTGCTACCAGCGCTACTACT 58.974 55.000 10.99 0.00 46.26 2.57
5947 7929 3.553597 CTGCTACCAGCGCTACTAC 57.446 57.895 10.99 0.00 46.26 2.73
5983 7965 4.497507 CGCTACTGCTACATGTTAGCTGTA 60.498 45.833 26.18 26.18 46.16 2.74
5985 7967 2.791560 CGCTACTGCTACATGTTAGCTG 59.208 50.000 19.25 20.39 42.67 4.24
5986 7968 2.688446 TCGCTACTGCTACATGTTAGCT 59.312 45.455 19.25 0.00 40.95 3.32
5987 7969 3.079960 TCGCTACTGCTACATGTTAGC 57.920 47.619 14.03 14.03 40.76 3.09
5988 7970 4.611943 ACATCGCTACTGCTACATGTTAG 58.388 43.478 2.30 0.00 36.97 2.34
5989 7971 4.649088 ACATCGCTACTGCTACATGTTA 57.351 40.909 2.30 0.00 36.97 2.41
5990 7972 3.526931 ACATCGCTACTGCTACATGTT 57.473 42.857 2.30 0.00 36.97 2.71
5991 7973 3.526931 AACATCGCTACTGCTACATGT 57.473 42.857 2.69 2.69 34.93 3.21
5992 7974 3.544834 GCAAACATCGCTACTGCTACATG 60.545 47.826 0.00 0.00 36.97 3.21
5993 7975 2.609459 GCAAACATCGCTACTGCTACAT 59.391 45.455 0.00 0.00 36.97 2.29
5994 7976 1.999735 GCAAACATCGCTACTGCTACA 59.000 47.619 0.00 0.00 36.97 2.74
5995 7977 1.327764 GGCAAACATCGCTACTGCTAC 59.672 52.381 0.00 0.00 36.97 3.58
5996 7978 1.651987 GGCAAACATCGCTACTGCTA 58.348 50.000 0.00 0.00 36.97 3.49
5997 7979 1.026718 GGGCAAACATCGCTACTGCT 61.027 55.000 0.00 0.00 36.97 4.24
5998 7980 1.305219 TGGGCAAACATCGCTACTGC 61.305 55.000 0.00 0.00 0.00 4.40
5999 7981 0.729116 CTGGGCAAACATCGCTACTG 59.271 55.000 0.00 0.00 0.00 2.74
6000 7982 1.026718 GCTGGGCAAACATCGCTACT 61.027 55.000 0.00 0.00 0.00 2.57
6001 7983 1.429423 GCTGGGCAAACATCGCTAC 59.571 57.895 0.00 0.00 0.00 3.58
6002 7984 2.106074 CGCTGGGCAAACATCGCTA 61.106 57.895 0.00 0.00 0.00 4.26
6003 7985 3.434319 CGCTGGGCAAACATCGCT 61.434 61.111 0.00 0.00 0.00 4.93
6026 8008 4.672283 GCGCTACTGCTAACTAGGTATAGC 60.672 50.000 14.21 14.21 43.78 2.97
6027 8009 4.435784 CGCGCTACTGCTAACTAGGTATAG 60.436 50.000 5.56 0.00 36.97 1.31
6028 8010 3.434641 CGCGCTACTGCTAACTAGGTATA 59.565 47.826 5.56 0.00 36.97 1.47
6029 8011 2.225963 CGCGCTACTGCTAACTAGGTAT 59.774 50.000 5.56 0.00 36.97 2.73
6030 8012 1.600957 CGCGCTACTGCTAACTAGGTA 59.399 52.381 5.56 0.00 36.97 3.08
6031 8013 0.381089 CGCGCTACTGCTAACTAGGT 59.619 55.000 5.56 0.00 36.97 3.08
6032 8014 0.317938 CCGCGCTACTGCTAACTAGG 60.318 60.000 5.56 0.00 36.97 3.02
6033 8015 0.317938 CCCGCGCTACTGCTAACTAG 60.318 60.000 5.56 0.00 36.97 2.57
6034 8016 1.033746 ACCCGCGCTACTGCTAACTA 61.034 55.000 5.56 0.00 36.97 2.24
6035 8017 1.885163 AACCCGCGCTACTGCTAACT 61.885 55.000 5.56 0.00 36.97 2.24
6036 8018 1.419107 GAACCCGCGCTACTGCTAAC 61.419 60.000 5.56 0.00 36.97 2.34
6037 8019 1.153706 GAACCCGCGCTACTGCTAA 60.154 57.895 5.56 0.00 36.97 3.09
6038 8020 1.601419 AAGAACCCGCGCTACTGCTA 61.601 55.000 5.56 0.00 36.97 3.49
6039 8021 2.943978 AAGAACCCGCGCTACTGCT 61.944 57.895 5.56 0.00 36.97 4.24
6040 8022 2.434359 AAGAACCCGCGCTACTGC 60.434 61.111 5.56 0.00 0.00 4.40
6041 8023 0.669318 TTCAAGAACCCGCGCTACTG 60.669 55.000 5.56 0.00 0.00 2.74
6042 8024 0.034337 TTTCAAGAACCCGCGCTACT 59.966 50.000 5.56 0.00 0.00 2.57
6043 8025 0.869730 TTTTCAAGAACCCGCGCTAC 59.130 50.000 5.56 0.00 0.00 3.58
6044 8026 1.153353 CTTTTCAAGAACCCGCGCTA 58.847 50.000 5.56 0.00 0.00 4.26
6045 8027 0.818040 ACTTTTCAAGAACCCGCGCT 60.818 50.000 5.56 0.00 0.00 5.92
6046 8028 0.660300 CACTTTTCAAGAACCCGCGC 60.660 55.000 0.00 0.00 0.00 6.86
6047 8029 0.660300 GCACTTTTCAAGAACCCGCG 60.660 55.000 0.00 0.00 0.00 6.46
6048 8030 0.668535 AGCACTTTTCAAGAACCCGC 59.331 50.000 0.00 0.00 0.00 6.13
6049 8031 1.600413 GCAGCACTTTTCAAGAACCCG 60.600 52.381 0.00 0.00 0.00 5.28
6050 8032 1.683385 AGCAGCACTTTTCAAGAACCC 59.317 47.619 0.00 0.00 0.00 4.11
6051 8033 2.358898 TCAGCAGCACTTTTCAAGAACC 59.641 45.455 0.00 0.00 0.00 3.62
6052 8034 3.698029 TCAGCAGCACTTTTCAAGAAC 57.302 42.857 0.00 0.00 0.00 3.01
6053 8035 5.065914 ACTATCAGCAGCACTTTTCAAGAA 58.934 37.500 0.00 0.00 0.00 2.52
6054 8036 4.645535 ACTATCAGCAGCACTTTTCAAGA 58.354 39.130 0.00 0.00 0.00 3.02
6055 8037 5.641209 ACTACTATCAGCAGCACTTTTCAAG 59.359 40.000 0.00 0.00 0.00 3.02
6056 8038 5.551233 ACTACTATCAGCAGCACTTTTCAA 58.449 37.500 0.00 0.00 0.00 2.69
6057 8039 5.152623 ACTACTATCAGCAGCACTTTTCA 57.847 39.130 0.00 0.00 0.00 2.69
6058 8040 6.814146 ACTTACTACTATCAGCAGCACTTTTC 59.186 38.462 0.00 0.00 0.00 2.29
6059 8041 6.702329 ACTTACTACTATCAGCAGCACTTTT 58.298 36.000 0.00 0.00 0.00 2.27
6060 8042 6.287589 ACTTACTACTATCAGCAGCACTTT 57.712 37.500 0.00 0.00 0.00 2.66
6061 8043 5.923733 ACTTACTACTATCAGCAGCACTT 57.076 39.130 0.00 0.00 0.00 3.16
6062 8044 5.009210 GCTACTTACTACTATCAGCAGCACT 59.991 44.000 0.00 0.00 0.00 4.40
6063 8045 5.216648 GCTACTTACTACTATCAGCAGCAC 58.783 45.833 0.00 0.00 0.00 4.40
6064 8046 4.887655 TGCTACTTACTACTATCAGCAGCA 59.112 41.667 0.00 0.00 32.94 4.41
6065 8047 5.440234 TGCTACTTACTACTATCAGCAGC 57.560 43.478 0.00 0.00 32.94 5.25
6066 8048 7.753132 GCTATTGCTACTTACTACTATCAGCAG 59.247 40.741 0.00 0.00 38.63 4.24
6067 8049 7.573283 CGCTATTGCTACTTACTACTATCAGCA 60.573 40.741 0.00 0.00 35.87 4.41
6068 8050 6.743627 CGCTATTGCTACTTACTACTATCAGC 59.256 42.308 0.00 0.00 36.97 4.26
6069 8051 7.808672 ACGCTATTGCTACTTACTACTATCAG 58.191 38.462 0.00 0.00 36.97 2.90
6070 8052 7.741027 ACGCTATTGCTACTTACTACTATCA 57.259 36.000 0.00 0.00 36.97 2.15
6071 8053 9.116054 GAAACGCTATTGCTACTTACTACTATC 57.884 37.037 0.00 0.00 36.97 2.08
6072 8054 8.848182 AGAAACGCTATTGCTACTTACTACTAT 58.152 33.333 0.00 0.00 36.97 2.12
6073 8055 8.218338 AGAAACGCTATTGCTACTTACTACTA 57.782 34.615 0.00 0.00 36.97 1.82
6074 8056 7.098074 AGAAACGCTATTGCTACTTACTACT 57.902 36.000 0.00 0.00 36.97 2.57
6075 8057 7.752557 AAGAAACGCTATTGCTACTTACTAC 57.247 36.000 0.00 0.00 36.97 2.73
6076 8058 8.653338 CAAAAGAAACGCTATTGCTACTTACTA 58.347 33.333 0.00 0.00 36.97 1.82
6077 8059 7.386848 TCAAAAGAAACGCTATTGCTACTTACT 59.613 33.333 0.00 0.00 36.97 2.24
6078 8060 7.515643 TCAAAAGAAACGCTATTGCTACTTAC 58.484 34.615 0.00 0.00 36.97 2.34
6079 8061 7.661127 TCAAAAGAAACGCTATTGCTACTTA 57.339 32.000 0.00 0.00 36.97 2.24
6080 8062 6.554334 TCAAAAGAAACGCTATTGCTACTT 57.446 33.333 0.00 0.00 36.97 2.24
6081 8063 6.554334 TTCAAAAGAAACGCTATTGCTACT 57.446 33.333 0.00 0.00 36.97 2.57
6082 8064 7.617533 TTTTCAAAAGAAACGCTATTGCTAC 57.382 32.000 0.00 0.00 36.97 3.58
6083 8065 7.851822 CTTTTCAAAAGAAACGCTATTGCTA 57.148 32.000 3.54 0.00 36.97 3.49
6084 8066 6.753897 CTTTTCAAAAGAAACGCTATTGCT 57.246 33.333 3.54 0.00 36.97 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.