Multiple sequence alignment - TraesCS7B01G376300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G376300 chr7B 100.000 3404 0 0 1 3404 641193108 641196511 0.000000e+00 6287
1 TraesCS7B01G376300 chr7B 90.606 330 30 1 2028 2357 641171382 641171710 1.450000e-118 436
2 TraesCS7B01G376300 chr7D 89.284 1633 116 30 962 2554 577745703 577747316 0.000000e+00 1991
3 TraesCS7B01G376300 chr7D 89.100 633 28 15 287 906 577723936 577724540 0.000000e+00 749
4 TraesCS7B01G376300 chr4B 88.152 709 51 11 2697 3404 449188034 449188710 0.000000e+00 813
5 TraesCS7B01G376300 chr4B 88.462 208 19 3 84 290 78594345 78594142 2.620000e-61 246
6 TraesCS7B01G376300 chr7A 83.892 776 108 12 1641 2408 669783357 669784123 0.000000e+00 725
7 TraesCS7B01G376300 chr7A 82.800 250 39 4 1000 1247 669782678 669782925 1.590000e-53 220
8 TraesCS7B01G376300 chr7A 79.167 288 39 18 1 275 462941354 462941633 2.700000e-41 180
9 TraesCS7B01G376300 chr5B 90.604 298 24 1 1 294 44252102 44251805 3.180000e-105 392
10 TraesCS7B01G376300 chr5B 78.696 230 34 13 6 226 78292711 78292488 4.580000e-29 139
11 TraesCS7B01G376300 chr2B 92.308 221 16 1 73 293 754867851 754868070 2.550000e-81 313
12 TraesCS7B01G376300 chrUn 90.045 221 22 0 3182 3402 392935721 392935941 1.550000e-73 287
13 TraesCS7B01G376300 chrUn 89.593 221 23 0 3182 3402 392934105 392934325 7.190000e-72 281
14 TraesCS7B01G376300 chrUn 83.974 156 16 8 1 152 24337707 24337857 1.270000e-29 141
15 TraesCS7B01G376300 chrUn 83.974 156 16 8 1 152 311798320 311798470 1.270000e-29 141
16 TraesCS7B01G376300 chr1B 90.045 221 22 0 3182 3402 73130915 73130695 1.550000e-73 287
17 TraesCS7B01G376300 chr1B 89.140 221 24 0 3182 3402 73277537 73277317 3.350000e-70 276
18 TraesCS7B01G376300 chr1B 90.909 198 18 0 3204 3401 622182182 622182379 2.010000e-67 267
19 TraesCS7B01G376300 chr1B 87.783 221 27 0 3182 3402 73232414 73232194 3.370000e-65 259
20 TraesCS7B01G376300 chr5D 91.045 201 18 0 3204 3404 107148758 107148558 4.330000e-69 272
21 TraesCS7B01G376300 chr1D 91.837 196 14 1 3204 3399 13888937 13889130 4.330000e-69 272
22 TraesCS7B01G376300 chr3B 87.440 207 14 3 84 290 758344403 758344209 9.500000e-56 228
23 TraesCS7B01G376300 chr3B 85.153 229 20 4 62 289 758341366 758341151 4.420000e-54 222
24 TraesCS7B01G376300 chr3D 82.759 174 19 9 1 168 8416468 8416636 9.840000e-31 145
25 TraesCS7B01G376300 chr5A 82.803 157 18 8 1 153 315991873 315992024 7.660000e-27 132
26 TraesCS7B01G376300 chr2D 82.166 157 17 9 1 152 641061176 641061326 1.280000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G376300 chr7B 641193108 641196511 3403 False 6287.0 6287 100.0000 1 3404 1 chr7B.!!$F2 3403
1 TraesCS7B01G376300 chr7D 577745703 577747316 1613 False 1991.0 1991 89.2840 962 2554 1 chr7D.!!$F2 1592
2 TraesCS7B01G376300 chr7D 577723936 577724540 604 False 749.0 749 89.1000 287 906 1 chr7D.!!$F1 619
3 TraesCS7B01G376300 chr4B 449188034 449188710 676 False 813.0 813 88.1520 2697 3404 1 chr4B.!!$F1 707
4 TraesCS7B01G376300 chr7A 669782678 669784123 1445 False 472.5 725 83.3460 1000 2408 2 chr7A.!!$F2 1408
5 TraesCS7B01G376300 chrUn 392934105 392935941 1836 False 284.0 287 89.8190 3182 3402 2 chrUn.!!$F3 220
6 TraesCS7B01G376300 chr3B 758341151 758344403 3252 True 225.0 228 86.2965 62 290 2 chr3B.!!$R1 228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 3922 0.031994 GAAATTGCCCGCTTGTGTGT 59.968 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2561 5736 0.034896 CGACTTGTACCTGGCCAGTT 59.965 55.0 30.63 20.75 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.853330 CATGTTGCTCGGTCGCGG 61.853 66.667 6.13 0.00 0.00 6.46
25 26 4.488136 TCGGTCGCGGGGTAGCTA 62.488 66.667 6.13 0.00 34.40 3.32
26 27 3.962421 CGGTCGCGGGGTAGCTAG 61.962 72.222 6.13 0.00 34.40 3.42
27 28 2.517875 GGTCGCGGGGTAGCTAGA 60.518 66.667 6.13 0.00 34.40 2.43
28 29 2.720605 GTCGCGGGGTAGCTAGAC 59.279 66.667 6.13 0.00 34.40 2.59
29 30 2.898840 TCGCGGGGTAGCTAGACG 60.899 66.667 6.13 0.02 34.40 4.18
30 31 4.625781 CGCGGGGTAGCTAGACGC 62.626 72.222 20.47 20.47 46.04 5.19
31 32 4.625781 GCGGGGTAGCTAGACGCG 62.626 72.222 22.59 22.59 45.59 6.01
32 33 2.898840 CGGGGTAGCTAGACGCGA 60.899 66.667 22.51 0.00 45.59 5.87
33 34 2.259439 CGGGGTAGCTAGACGCGAT 61.259 63.158 22.51 2.85 45.59 4.58
34 35 1.580437 GGGGTAGCTAGACGCGATC 59.420 63.158 15.93 6.88 45.59 3.69
35 36 1.580437 GGGTAGCTAGACGCGATCC 59.420 63.158 15.93 0.66 45.59 3.36
36 37 1.580437 GGTAGCTAGACGCGATCCC 59.420 63.158 15.93 0.00 45.59 3.85
37 38 0.890090 GGTAGCTAGACGCGATCCCT 60.890 60.000 15.93 6.72 45.59 4.20
38 39 1.610102 GGTAGCTAGACGCGATCCCTA 60.610 57.143 15.93 7.58 45.59 3.53
39 40 2.358015 GTAGCTAGACGCGATCCCTAT 58.642 52.381 15.93 0.00 45.59 2.57
40 41 1.912417 AGCTAGACGCGATCCCTATT 58.088 50.000 15.93 0.00 45.59 1.73
41 42 1.813786 AGCTAGACGCGATCCCTATTC 59.186 52.381 15.93 0.00 45.59 1.75
42 43 1.135344 GCTAGACGCGATCCCTATTCC 60.135 57.143 15.93 0.00 0.00 3.01
43 44 2.438411 CTAGACGCGATCCCTATTCCT 58.562 52.381 15.93 0.00 0.00 3.36
44 45 0.962489 AGACGCGATCCCTATTCCTG 59.038 55.000 15.93 0.00 0.00 3.86
45 46 0.959553 GACGCGATCCCTATTCCTGA 59.040 55.000 15.93 0.00 0.00 3.86
46 47 1.546476 GACGCGATCCCTATTCCTGAT 59.454 52.381 15.93 0.00 0.00 2.90
47 48 1.546476 ACGCGATCCCTATTCCTGATC 59.454 52.381 15.93 0.00 33.22 2.92
48 49 1.821753 CGCGATCCCTATTCCTGATCT 59.178 52.381 0.00 0.00 34.17 2.75
49 50 3.017442 CGCGATCCCTATTCCTGATCTA 58.983 50.000 0.00 0.00 34.17 1.98
50 51 3.634448 CGCGATCCCTATTCCTGATCTAT 59.366 47.826 0.00 0.00 34.17 1.98
51 52 4.098654 CGCGATCCCTATTCCTGATCTATT 59.901 45.833 0.00 0.00 34.17 1.73
52 53 5.355596 GCGATCCCTATTCCTGATCTATTG 58.644 45.833 0.00 0.00 34.17 1.90
53 54 5.127845 GCGATCCCTATTCCTGATCTATTGA 59.872 44.000 0.00 0.00 34.17 2.57
54 55 6.682611 GCGATCCCTATTCCTGATCTATTGAG 60.683 46.154 0.00 0.00 34.17 3.02
55 56 6.183360 CGATCCCTATTCCTGATCTATTGAGG 60.183 46.154 0.00 0.00 34.17 3.86
56 57 6.233045 TCCCTATTCCTGATCTATTGAGGA 57.767 41.667 0.00 0.00 33.90 3.71
58 59 6.728164 TCCCTATTCCTGATCTATTGAGGAAG 59.272 42.308 14.70 4.79 46.54 3.46
59 60 6.728164 CCCTATTCCTGATCTATTGAGGAAGA 59.272 42.308 14.70 10.47 46.54 2.87
61 62 6.684897 ATTCCTGATCTATTGAGGAAGAGG 57.315 41.667 14.70 0.36 46.54 3.69
62 63 3.900601 TCCTGATCTATTGAGGAAGAGGC 59.099 47.826 0.00 0.00 32.74 4.70
63 64 3.903090 CCTGATCTATTGAGGAAGAGGCT 59.097 47.826 0.00 0.00 0.00 4.58
64 65 4.347583 CCTGATCTATTGAGGAAGAGGCTT 59.652 45.833 0.00 0.00 0.00 4.35
65 66 5.163216 CCTGATCTATTGAGGAAGAGGCTTT 60.163 44.000 0.00 0.00 0.00 3.51
66 67 5.678583 TGATCTATTGAGGAAGAGGCTTTG 58.321 41.667 0.00 0.00 0.00 2.77
67 68 5.190528 TGATCTATTGAGGAAGAGGCTTTGT 59.809 40.000 0.00 0.00 0.00 2.83
68 69 5.505181 TCTATTGAGGAAGAGGCTTTGTT 57.495 39.130 0.00 0.00 0.00 2.83
69 70 6.620877 TCTATTGAGGAAGAGGCTTTGTTA 57.379 37.500 0.00 0.00 0.00 2.41
70 71 6.407202 TCTATTGAGGAAGAGGCTTTGTTAC 58.593 40.000 0.00 0.00 0.00 2.50
71 72 3.418684 TGAGGAAGAGGCTTTGTTACC 57.581 47.619 0.00 0.00 0.00 2.85
72 73 2.708861 TGAGGAAGAGGCTTTGTTACCA 59.291 45.455 0.00 0.00 0.00 3.25
73 74 3.330701 TGAGGAAGAGGCTTTGTTACCAT 59.669 43.478 0.00 0.00 0.00 3.55
74 75 3.690460 AGGAAGAGGCTTTGTTACCATG 58.310 45.455 0.00 0.00 0.00 3.66
75 76 3.074538 AGGAAGAGGCTTTGTTACCATGT 59.925 43.478 0.00 0.00 0.00 3.21
76 77 3.826729 GGAAGAGGCTTTGTTACCATGTT 59.173 43.478 0.00 0.00 0.00 2.71
77 78 5.007682 GGAAGAGGCTTTGTTACCATGTTA 58.992 41.667 0.00 0.00 0.00 2.41
78 79 5.475564 GGAAGAGGCTTTGTTACCATGTTAA 59.524 40.000 0.00 0.00 0.00 2.01
79 80 6.015772 GGAAGAGGCTTTGTTACCATGTTAAA 60.016 38.462 0.00 0.00 0.00 1.52
80 81 7.309805 GGAAGAGGCTTTGTTACCATGTTAAAT 60.310 37.037 0.00 0.00 0.00 1.40
81 82 6.924111 AGAGGCTTTGTTACCATGTTAAATG 58.076 36.000 0.00 0.00 0.00 2.32
82 83 6.036577 AGGCTTTGTTACCATGTTAAATGG 57.963 37.500 0.00 0.00 44.54 3.16
83 84 5.777732 AGGCTTTGTTACCATGTTAAATGGA 59.222 36.000 8.66 0.00 41.64 3.41
84 85 6.440328 AGGCTTTGTTACCATGTTAAATGGAT 59.560 34.615 8.66 0.00 41.64 3.41
85 86 7.038373 AGGCTTTGTTACCATGTTAAATGGATT 60.038 33.333 8.66 0.00 41.64 3.01
86 87 8.254508 GGCTTTGTTACCATGTTAAATGGATTA 58.745 33.333 8.66 0.00 41.64 1.75
87 88 9.301153 GCTTTGTTACCATGTTAAATGGATTAG 57.699 33.333 8.66 0.00 41.64 1.73
96 97 6.189677 TGTTAAATGGATTAGGAAGCGTTG 57.810 37.500 0.00 0.00 0.00 4.10
109 110 0.465460 AGCGTTGAACCCTTTGCTCA 60.465 50.000 0.00 0.00 0.00 4.26
114 115 1.228552 GAACCCTTTGCTCAGGCCA 60.229 57.895 5.01 0.00 37.74 5.36
117 118 2.270986 CCCTTTGCTCAGGCCACAC 61.271 63.158 5.01 0.00 37.74 3.82
130 131 6.071334 GCTCAGGCCACACTTGTATATATAGA 60.071 42.308 5.01 0.00 0.00 1.98
153 154 1.135689 CAATGCCGTGGCTTACAAGAC 60.136 52.381 12.84 0.00 42.51 3.01
158 159 1.337821 CGTGGCTTACAAGACGAGAC 58.662 55.000 0.00 0.00 36.62 3.36
161 162 0.524862 GGCTTACAAGACGAGACCGA 59.475 55.000 0.00 0.00 39.50 4.69
162 163 1.467713 GGCTTACAAGACGAGACCGAG 60.468 57.143 0.00 0.00 39.50 4.63
163 164 1.467734 GCTTACAAGACGAGACCGAGA 59.532 52.381 0.00 0.00 39.50 4.04
169 3218 1.948104 AGACGAGACCGAGAGAGATG 58.052 55.000 0.00 0.00 39.50 2.90
178 3227 2.422832 ACCGAGAGAGATGGTTCGTTAC 59.577 50.000 0.00 0.00 29.87 2.50
180 3229 3.487711 CCGAGAGAGATGGTTCGTTACAG 60.488 52.174 0.00 0.00 0.00 2.74
207 3256 5.520632 ACGATCGTTACATGAGGATAACAG 58.479 41.667 16.60 0.00 31.91 3.16
225 3274 9.349713 GGATAACAGAAGAAGAGATAGAGAAGA 57.650 37.037 0.00 0.00 0.00 2.87
289 3338 9.871238 TCTATCTCAAACTAACTATTCCAACAC 57.129 33.333 0.00 0.00 0.00 3.32
290 3339 7.596749 ATCTCAAACTAACTATTCCAACACG 57.403 36.000 0.00 0.00 0.00 4.49
360 3409 4.815269 TGGTTTGAAAAGTTGAAGGTGTG 58.185 39.130 0.00 0.00 0.00 3.82
411 3460 6.183360 GGATGAAAACCGCACTGTGATTAATA 60.183 38.462 12.86 0.00 0.00 0.98
416 3465 3.451178 ACCGCACTGTGATTAATAGAGGT 59.549 43.478 12.86 0.00 0.00 3.85
459 3508 5.822519 TCTCATTAGCACCGCAATCTTTTAT 59.177 36.000 0.00 0.00 0.00 1.40
504 3553 7.111247 AGTTTCCATGTTTGAAAATCTGACA 57.889 32.000 0.00 0.00 33.80 3.58
506 3555 6.713762 TTCCATGTTTGAAAATCTGACACT 57.286 33.333 0.00 0.00 0.00 3.55
602 3651 8.404107 TGAACTTTCCCTTTCTACCTAAATTG 57.596 34.615 0.00 0.00 0.00 2.32
663 3712 8.970691 AACATAAAGATTACATTTGAGCACAC 57.029 30.769 0.00 0.00 0.00 3.82
664 3713 8.109705 ACATAAAGATTACATTTGAGCACACA 57.890 30.769 0.00 0.00 0.00 3.72
665 3714 8.742777 ACATAAAGATTACATTTGAGCACACAT 58.257 29.630 0.00 0.00 0.00 3.21
666 3715 9.016623 CATAAAGATTACATTTGAGCACACATG 57.983 33.333 8.49 8.49 39.30 3.21
678 3727 4.310788 CACATGCACGCACACGCA 62.311 61.111 0.00 0.00 45.53 5.24
705 3754 2.720933 CACACACGGATAGAGATCACG 58.279 52.381 0.00 0.00 33.27 4.35
725 3774 1.068816 GGGTGCACGTGGTACAAATTC 60.069 52.381 18.88 0.00 44.16 2.17
741 3790 4.082408 ACAAATTCATGCAGTGATCCTGTG 60.082 41.667 11.37 4.94 43.55 3.66
837 3896 6.035368 ACATAAGATTGGATCTGGATCTCG 57.965 41.667 9.96 0.00 40.13 4.04
859 3918 3.508744 CAATAGAAATTGCCCGCTTGT 57.491 42.857 0.00 0.00 36.35 3.16
860 3919 3.181397 CAATAGAAATTGCCCGCTTGTG 58.819 45.455 0.00 0.00 36.35 3.33
861 3920 1.904287 TAGAAATTGCCCGCTTGTGT 58.096 45.000 0.00 0.00 0.00 3.72
863 3922 0.031994 GAAATTGCCCGCTTGTGTGT 59.968 50.000 0.00 0.00 0.00 3.72
886 3947 9.058424 GTGTAGCGTTAATTTTAAATTGGTCTC 57.942 33.333 12.62 0.00 0.00 3.36
906 3967 2.895404 TCCGTAGCTGGAGTGTTAGTTT 59.105 45.455 0.00 0.00 33.05 2.66
907 3968 3.322828 TCCGTAGCTGGAGTGTTAGTTTT 59.677 43.478 0.00 0.00 33.05 2.43
908 3969 4.062991 CCGTAGCTGGAGTGTTAGTTTTT 58.937 43.478 0.00 0.00 0.00 1.94
929 3990 2.288365 TTTTCTTCGTTACTTGCGCG 57.712 45.000 0.00 0.00 0.00 6.86
930 3991 1.489574 TTTCTTCGTTACTTGCGCGA 58.510 45.000 12.10 0.00 0.00 5.87
931 3992 1.705256 TTCTTCGTTACTTGCGCGAT 58.295 45.000 12.10 0.00 34.52 4.58
932 3993 0.989164 TCTTCGTTACTTGCGCGATG 59.011 50.000 12.10 0.10 34.52 3.84
933 3994 0.713883 CTTCGTTACTTGCGCGATGT 59.286 50.000 12.10 7.35 34.52 3.06
934 3995 0.436913 TTCGTTACTTGCGCGATGTG 59.563 50.000 12.10 0.00 34.52 3.21
935 3996 0.665068 TCGTTACTTGCGCGATGTGT 60.665 50.000 12.10 4.89 0.00 3.72
936 3997 0.246757 CGTTACTTGCGCGATGTGTC 60.247 55.000 12.10 0.00 0.00 3.67
937 3998 0.094730 GTTACTTGCGCGATGTGTCC 59.905 55.000 12.10 0.00 0.00 4.02
938 3999 0.319986 TTACTTGCGCGATGTGTCCA 60.320 50.000 12.10 0.00 0.00 4.02
939 4000 0.108377 TACTTGCGCGATGTGTCCAT 60.108 50.000 12.10 0.00 0.00 3.41
940 4001 0.108377 ACTTGCGCGATGTGTCCATA 60.108 50.000 12.10 0.00 0.00 2.74
941 4002 1.220529 CTTGCGCGATGTGTCCATAT 58.779 50.000 12.10 0.00 0.00 1.78
942 4003 2.223947 ACTTGCGCGATGTGTCCATATA 60.224 45.455 12.10 0.00 0.00 0.86
943 4004 2.741759 TGCGCGATGTGTCCATATAT 57.258 45.000 12.10 0.00 0.00 0.86
944 4005 3.859411 TGCGCGATGTGTCCATATATA 57.141 42.857 12.10 0.00 0.00 0.86
945 4006 3.769536 TGCGCGATGTGTCCATATATAG 58.230 45.455 12.10 0.00 0.00 1.31
946 4007 3.192633 TGCGCGATGTGTCCATATATAGT 59.807 43.478 12.10 0.00 0.00 2.12
947 4008 4.396790 TGCGCGATGTGTCCATATATAGTA 59.603 41.667 12.10 0.00 0.00 1.82
948 4009 4.733887 GCGCGATGTGTCCATATATAGTAC 59.266 45.833 12.10 0.00 0.00 2.73
949 4010 4.962151 CGCGATGTGTCCATATATAGTACG 59.038 45.833 0.00 0.00 0.00 3.67
950 4011 5.446875 CGCGATGTGTCCATATATAGTACGT 60.447 44.000 0.00 0.00 0.00 3.57
951 4012 6.237915 CGCGATGTGTCCATATATAGTACGTA 60.238 42.308 0.00 0.00 0.00 3.57
952 4013 6.904011 GCGATGTGTCCATATATAGTACGTAC 59.096 42.308 18.10 18.10 0.00 3.67
953 4014 7.201591 GCGATGTGTCCATATATAGTACGTACT 60.202 40.741 29.62 29.62 40.24 2.73
954 4015 9.305925 CGATGTGTCCATATATAGTACGTACTA 57.694 37.037 31.69 31.69 42.43 1.82
1018 4079 1.202580 AGATGATGGCGCCACTAGTTC 60.203 52.381 35.50 25.43 0.00 3.01
1019 4080 0.530650 ATGATGGCGCCACTAGTTCG 60.531 55.000 35.50 9.31 0.00 3.95
1193 4254 2.049433 CGACACCTTCTTCGGCGT 60.049 61.111 6.85 0.00 0.00 5.68
1197 4258 2.920912 ACCTTCTTCGGCGTCCCA 60.921 61.111 6.85 0.00 0.00 4.37
1248 4313 2.947652 CCTCGACTTCGTAGGTAATGGA 59.052 50.000 0.00 0.00 40.80 3.41
1260 4325 1.134220 GGTAATGGAATGACCTCGGCA 60.134 52.381 0.00 0.00 39.86 5.69
1264 4329 3.795688 ATGGAATGACCTCGGCAATAT 57.204 42.857 0.00 0.00 39.86 1.28
1265 4330 4.908601 ATGGAATGACCTCGGCAATATA 57.091 40.909 0.00 0.00 39.86 0.86
1267 4332 3.389656 TGGAATGACCTCGGCAATATACA 59.610 43.478 0.00 0.00 39.86 2.29
1268 4333 4.041567 TGGAATGACCTCGGCAATATACAT 59.958 41.667 0.00 0.00 39.86 2.29
1269 4334 5.247337 TGGAATGACCTCGGCAATATACATA 59.753 40.000 0.00 0.00 39.86 2.29
1272 4337 7.653713 GGAATGACCTCGGCAATATACATATAG 59.346 40.741 0.00 0.00 35.41 1.31
1274 4339 7.476540 TGACCTCGGCAATATACATATAGTT 57.523 36.000 0.00 0.00 0.00 2.24
1275 4340 7.544622 TGACCTCGGCAATATACATATAGTTC 58.455 38.462 0.00 0.00 0.00 3.01
1276 4341 6.561614 ACCTCGGCAATATACATATAGTTCG 58.438 40.000 0.00 0.00 0.00 3.95
1277 4342 6.152323 ACCTCGGCAATATACATATAGTTCGT 59.848 38.462 0.00 0.00 0.00 3.85
1278 4343 6.691818 CCTCGGCAATATACATATAGTTCGTC 59.308 42.308 0.00 0.00 0.00 4.20
1281 4346 6.411203 CGGCAATATACATATAGTTCGTCTCG 59.589 42.308 0.00 0.00 0.00 4.04
1283 4348 7.754027 GGCAATATACATATAGTTCGTCTCGTT 59.246 37.037 0.00 0.00 0.00 3.85
1290 4355 6.856938 ACATATAGTTCGTCTCGTTGATTAGC 59.143 38.462 0.00 0.00 0.00 3.09
1291 4356 3.570926 AGTTCGTCTCGTTGATTAGCA 57.429 42.857 0.00 0.00 0.00 3.49
1292 4357 3.909430 AGTTCGTCTCGTTGATTAGCAA 58.091 40.909 0.00 0.00 0.00 3.91
1418 4534 1.154727 CGTGAACTTTGCGTACGGC 60.155 57.895 18.39 9.98 43.96 5.68
1463 4579 2.457366 TCTTCGAGAGCAAAGGGTTC 57.543 50.000 0.00 0.00 0.00 3.62
1489 4605 4.193334 CATGCCCGTCTCGCTCGA 62.193 66.667 0.00 0.00 0.00 4.04
1556 4672 4.081862 TCAGTAGAAGGTAAATCCACACGG 60.082 45.833 0.00 0.00 39.02 4.94
1593 4709 5.886960 ACCAGATTTAGCAAAGTAGCAAG 57.113 39.130 0.00 0.00 36.85 4.01
1600 4716 8.025445 AGATTTAGCAAAGTAGCAAGTCAATTG 58.975 33.333 0.00 0.00 42.20 2.32
1750 4886 2.436824 GGAAAGCTCACCGAGGCC 60.437 66.667 0.00 0.00 0.00 5.19
1771 4907 3.735037 GATCCGGACCTTCGTGCCC 62.735 68.421 6.12 0.00 0.00 5.36
1814 4950 5.164119 CGTTCAGTCATCACCGTAAGTAAAC 60.164 44.000 0.00 0.00 0.00 2.01
1817 4953 6.282167 TCAGTCATCACCGTAAGTAAACAAA 58.718 36.000 0.00 0.00 0.00 2.83
1819 4955 6.849305 CAGTCATCACCGTAAGTAAACAAAAC 59.151 38.462 0.00 0.00 0.00 2.43
1821 4957 7.927629 AGTCATCACCGTAAGTAAACAAAACTA 59.072 33.333 0.00 0.00 0.00 2.24
1822 4958 8.715088 GTCATCACCGTAAGTAAACAAAACTAT 58.285 33.333 0.00 0.00 0.00 2.12
1823 4959 8.714179 TCATCACCGTAAGTAAACAAAACTATG 58.286 33.333 0.00 0.00 0.00 2.23
1825 4961 8.436046 TCACCGTAAGTAAACAAAACTATGTT 57.564 30.769 0.00 0.00 45.12 2.71
1826 4962 8.550376 TCACCGTAAGTAAACAAAACTATGTTC 58.450 33.333 0.00 0.00 42.49 3.18
1828 4964 9.112725 ACCGTAAGTAAACAAAACTATGTTCTT 57.887 29.630 0.00 0.00 42.49 2.52
1829 4965 9.377383 CCGTAAGTAAACAAAACTATGTTCTTG 57.623 33.333 0.00 0.00 42.49 3.02
1854 4991 9.658799 TGTTTCCAACAAACAAATATGAAGAAA 57.341 25.926 0.00 0.00 38.72 2.52
1856 4993 7.945033 TCCAACAAACAAATATGAAGAAAGC 57.055 32.000 0.00 0.00 0.00 3.51
1858 4995 6.128849 CCAACAAACAAATATGAAGAAAGCGG 60.129 38.462 0.00 0.00 0.00 5.52
1859 4996 6.325919 ACAAACAAATATGAAGAAAGCGGA 57.674 33.333 0.00 0.00 0.00 5.54
1860 4997 6.381801 ACAAACAAATATGAAGAAAGCGGAG 58.618 36.000 0.00 0.00 0.00 4.63
1861 4998 6.016276 ACAAACAAATATGAAGAAAGCGGAGT 60.016 34.615 0.00 0.00 0.00 3.85
1862 4999 7.174253 ACAAACAAATATGAAGAAAGCGGAGTA 59.826 33.333 0.00 0.00 0.00 2.59
1866 5021 7.336931 ACAAATATGAAGAAAGCGGAGTAACAT 59.663 33.333 0.00 0.00 0.00 2.71
1874 5029 1.134401 AGCGGAGTAACATGACATGGG 60.134 52.381 19.39 0.00 33.60 4.00
1875 5030 1.134521 GCGGAGTAACATGACATGGGA 60.135 52.381 19.39 4.04 33.60 4.37
1876 5031 2.550978 CGGAGTAACATGACATGGGAC 58.449 52.381 19.39 15.24 33.60 4.46
1991 5157 2.048597 CACCGGCGCTGACTACAA 60.049 61.111 20.25 0.00 0.00 2.41
2067 5233 0.954449 CGCTCATGGGCATGATCCTC 60.954 60.000 19.64 0.00 45.74 3.71
2357 5523 1.679944 CGGAAATGTGCTCAGGTCCAT 60.680 52.381 16.47 0.00 32.93 3.41
2359 5525 1.667724 GAAATGTGCTCAGGTCCATCG 59.332 52.381 0.00 0.00 0.00 3.84
2361 5527 1.485124 ATGTGCTCAGGTCCATCGTA 58.515 50.000 0.00 0.00 0.00 3.43
2367 5533 0.104120 TCAGGTCCATCGTATTGCGG 59.896 55.000 0.00 0.00 41.72 5.69
2408 5574 2.170166 CCTCTCCTCCAGCTAGCTATG 58.830 57.143 18.86 12.00 0.00 2.23
2433 5608 3.618780 CTGCCCCTGTCAGTGCTCC 62.619 68.421 11.55 0.00 0.00 4.70
2448 5623 2.520982 TCCTGCGCGGCCTAGTAT 60.521 61.111 11.81 0.00 0.00 2.12
2456 5631 2.325761 CGCGGCCTAGTATTGTGTATC 58.674 52.381 0.00 0.00 0.00 2.24
2457 5632 2.030185 CGCGGCCTAGTATTGTGTATCT 60.030 50.000 0.00 0.00 0.00 1.98
2488 5663 2.613691 TCCCTTCGAAATGAACGTAGC 58.386 47.619 0.00 0.00 31.87 3.58
2510 5685 3.989698 CTTCGATGCGTCCGGTGCT 62.990 63.158 19.38 7.73 0.00 4.40
2511 5686 2.607668 CTTCGATGCGTCCGGTGCTA 62.608 60.000 19.38 8.81 0.00 3.49
2512 5687 2.877360 TTCGATGCGTCCGGTGCTAC 62.877 60.000 19.38 12.95 0.00 3.58
2513 5688 2.183300 GATGCGTCCGGTGCTACA 59.817 61.111 19.38 5.61 0.00 2.74
2545 5720 6.723298 TTGAGAATATCTCTGAGGAAGTCC 57.277 41.667 4.59 0.00 43.73 3.85
2547 5722 6.197903 TGAGAATATCTCTGAGGAAGTCCAA 58.802 40.000 4.59 0.00 43.73 3.53
2555 5730 7.502060 TCTCTGAGGAAGTCCAAATTATTCT 57.498 36.000 4.59 0.00 38.89 2.40
2556 5731 7.922382 TCTCTGAGGAAGTCCAAATTATTCTT 58.078 34.615 4.59 0.00 38.89 2.52
2557 5732 8.386264 TCTCTGAGGAAGTCCAAATTATTCTTT 58.614 33.333 4.59 0.00 38.89 2.52
2558 5733 8.940397 TCTGAGGAAGTCCAAATTATTCTTTT 57.060 30.769 0.00 0.00 38.89 2.27
2559 5734 9.014297 TCTGAGGAAGTCCAAATTATTCTTTTC 57.986 33.333 0.00 0.00 38.89 2.29
2560 5735 8.704849 TGAGGAAGTCCAAATTATTCTTTTCA 57.295 30.769 0.00 0.00 38.89 2.69
2561 5736 9.142014 TGAGGAAGTCCAAATTATTCTTTTCAA 57.858 29.630 0.00 0.00 38.89 2.69
2562 5737 9.981114 GAGGAAGTCCAAATTATTCTTTTCAAA 57.019 29.630 0.00 0.00 38.89 2.69
2563 5738 9.764363 AGGAAGTCCAAATTATTCTTTTCAAAC 57.236 29.630 0.00 0.00 38.89 2.93
2564 5739 9.764363 GGAAGTCCAAATTATTCTTTTCAAACT 57.236 29.630 0.00 0.00 35.64 2.66
2566 5741 9.546428 AAGTCCAAATTATTCTTTTCAAACTGG 57.454 29.630 0.00 0.00 0.00 4.00
2567 5742 7.657354 AGTCCAAATTATTCTTTTCAAACTGGC 59.343 33.333 0.00 0.00 0.00 4.85
2568 5743 6.934083 TCCAAATTATTCTTTTCAAACTGGCC 59.066 34.615 0.00 0.00 0.00 5.36
2569 5744 6.709846 CCAAATTATTCTTTTCAAACTGGCCA 59.290 34.615 4.71 4.71 0.00 5.36
2570 5745 7.095102 CCAAATTATTCTTTTCAAACTGGCCAG 60.095 37.037 31.60 31.60 0.00 4.85
2571 5746 5.467035 TTATTCTTTTCAAACTGGCCAGG 57.533 39.130 35.42 18.81 0.00 4.45
2572 5747 2.452600 TCTTTTCAAACTGGCCAGGT 57.547 45.000 35.42 29.19 0.00 4.00
2573 5748 3.586470 TCTTTTCAAACTGGCCAGGTA 57.414 42.857 35.42 14.08 0.00 3.08
2574 5749 3.219281 TCTTTTCAAACTGGCCAGGTAC 58.781 45.455 35.42 0.00 0.00 3.34
2575 5750 2.738587 TTTCAAACTGGCCAGGTACA 57.261 45.000 35.42 17.46 0.00 2.90
2576 5751 2.738587 TTCAAACTGGCCAGGTACAA 57.261 45.000 35.42 22.25 0.00 2.41
2577 5752 2.270352 TCAAACTGGCCAGGTACAAG 57.730 50.000 35.42 19.96 0.00 3.16
2578 5753 1.493022 TCAAACTGGCCAGGTACAAGT 59.507 47.619 35.42 12.38 0.00 3.16
2579 5754 1.880027 CAAACTGGCCAGGTACAAGTC 59.120 52.381 35.42 0.00 0.00 3.01
2580 5755 0.034896 AACTGGCCAGGTACAAGTCG 59.965 55.000 35.42 8.79 0.00 4.18
2581 5756 0.830444 ACTGGCCAGGTACAAGTCGA 60.830 55.000 35.42 0.00 0.00 4.20
2582 5757 0.108615 CTGGCCAGGTACAAGTCGAG 60.109 60.000 26.14 0.00 0.00 4.04
2583 5758 0.830444 TGGCCAGGTACAAGTCGAGT 60.830 55.000 0.00 0.00 0.00 4.18
2584 5759 0.389948 GGCCAGGTACAAGTCGAGTG 60.390 60.000 0.00 0.00 0.00 3.51
2585 5760 0.601558 GCCAGGTACAAGTCGAGTGA 59.398 55.000 0.00 0.00 0.00 3.41
2586 5761 1.000506 GCCAGGTACAAGTCGAGTGAA 59.999 52.381 0.00 0.00 0.00 3.18
2587 5762 2.547218 GCCAGGTACAAGTCGAGTGAAA 60.547 50.000 0.00 0.00 0.00 2.69
2588 5763 3.724374 CCAGGTACAAGTCGAGTGAAAA 58.276 45.455 0.00 0.00 0.00 2.29
2589 5764 4.124238 CCAGGTACAAGTCGAGTGAAAAA 58.876 43.478 0.00 0.00 0.00 1.94
2590 5765 4.025145 CCAGGTACAAGTCGAGTGAAAAAC 60.025 45.833 0.00 0.00 0.00 2.43
2591 5766 4.809426 CAGGTACAAGTCGAGTGAAAAACT 59.191 41.667 0.00 0.00 43.85 2.66
2592 5767 4.809426 AGGTACAAGTCGAGTGAAAAACTG 59.191 41.667 0.00 0.00 40.07 3.16
2593 5768 4.807304 GGTACAAGTCGAGTGAAAAACTGA 59.193 41.667 0.00 0.00 40.07 3.41
2594 5769 5.292589 GGTACAAGTCGAGTGAAAAACTGAA 59.707 40.000 0.00 0.00 40.07 3.02
2595 5770 5.873179 ACAAGTCGAGTGAAAAACTGAAA 57.127 34.783 0.00 0.00 40.07 2.69
2596 5771 6.249035 ACAAGTCGAGTGAAAAACTGAAAA 57.751 33.333 0.00 0.00 40.07 2.29
2597 5772 6.084277 ACAAGTCGAGTGAAAAACTGAAAAC 58.916 36.000 0.00 0.00 40.07 2.43
2598 5773 5.873179 AGTCGAGTGAAAAACTGAAAACA 57.127 34.783 0.00 0.00 40.07 2.83
2599 5774 6.436843 AGTCGAGTGAAAAACTGAAAACAT 57.563 33.333 0.00 0.00 40.07 2.71
2600 5775 7.548196 AGTCGAGTGAAAAACTGAAAACATA 57.452 32.000 0.00 0.00 40.07 2.29
2601 5776 8.154649 AGTCGAGTGAAAAACTGAAAACATAT 57.845 30.769 0.00 0.00 40.07 1.78
2602 5777 9.268268 AGTCGAGTGAAAAACTGAAAACATATA 57.732 29.630 0.00 0.00 40.07 0.86
2614 5789 8.370493 ACTGAAAACATATATTGGATCACTCG 57.630 34.615 0.00 0.00 0.00 4.18
2615 5790 7.442364 ACTGAAAACATATATTGGATCACTCGG 59.558 37.037 0.00 0.00 0.00 4.63
2616 5791 7.279615 TGAAAACATATATTGGATCACTCGGT 58.720 34.615 0.00 0.00 0.00 4.69
2617 5792 7.773224 TGAAAACATATATTGGATCACTCGGTT 59.227 33.333 0.00 0.00 0.00 4.44
2618 5793 8.519799 AAAACATATATTGGATCACTCGGTTT 57.480 30.769 0.00 0.00 0.00 3.27
2619 5794 8.519799 AAACATATATTGGATCACTCGGTTTT 57.480 30.769 0.00 0.00 0.00 2.43
2620 5795 7.496529 ACATATATTGGATCACTCGGTTTTG 57.503 36.000 0.00 0.00 0.00 2.44
2621 5796 4.900635 ATATTGGATCACTCGGTTTTGC 57.099 40.909 0.00 0.00 0.00 3.68
2622 5797 2.270352 TTGGATCACTCGGTTTTGCT 57.730 45.000 0.00 0.00 0.00 3.91
2623 5798 1.522668 TGGATCACTCGGTTTTGCTG 58.477 50.000 0.00 0.00 0.00 4.41
2624 5799 0.804989 GGATCACTCGGTTTTGCTGG 59.195 55.000 0.00 0.00 0.00 4.85
2625 5800 0.169009 GATCACTCGGTTTTGCTGGC 59.831 55.000 0.00 0.00 0.00 4.85
2626 5801 1.577328 ATCACTCGGTTTTGCTGGCG 61.577 55.000 0.00 0.00 0.00 5.69
2627 5802 2.203153 ACTCGGTTTTGCTGGCGT 60.203 55.556 0.00 0.00 0.00 5.68
2628 5803 2.251642 ACTCGGTTTTGCTGGCGTC 61.252 57.895 0.00 0.00 0.00 5.19
2629 5804 2.203084 TCGGTTTTGCTGGCGTCA 60.203 55.556 0.00 0.00 0.00 4.35
2630 5805 1.781025 CTCGGTTTTGCTGGCGTCAA 61.781 55.000 0.00 0.00 0.00 3.18
2631 5806 1.169661 TCGGTTTTGCTGGCGTCAAT 61.170 50.000 0.00 0.00 0.00 2.57
2632 5807 0.729140 CGGTTTTGCTGGCGTCAATC 60.729 55.000 0.00 0.00 0.00 2.67
2633 5808 0.598065 GGTTTTGCTGGCGTCAATCT 59.402 50.000 0.00 0.00 0.00 2.40
2634 5809 1.000274 GGTTTTGCTGGCGTCAATCTT 60.000 47.619 0.00 0.00 0.00 2.40
2635 5810 2.545742 GGTTTTGCTGGCGTCAATCTTT 60.546 45.455 0.00 0.00 0.00 2.52
2636 5811 3.123050 GTTTTGCTGGCGTCAATCTTTT 58.877 40.909 0.00 0.00 0.00 2.27
2637 5812 3.451141 TTTGCTGGCGTCAATCTTTTT 57.549 38.095 0.00 0.00 0.00 1.94
2638 5813 4.576216 TTTGCTGGCGTCAATCTTTTTA 57.424 36.364 0.00 0.00 0.00 1.52
2639 5814 4.782019 TTGCTGGCGTCAATCTTTTTAT 57.218 36.364 0.00 0.00 0.00 1.40
2640 5815 4.782019 TGCTGGCGTCAATCTTTTTATT 57.218 36.364 0.00 0.00 0.00 1.40
2641 5816 5.132897 TGCTGGCGTCAATCTTTTTATTT 57.867 34.783 0.00 0.00 0.00 1.40
2642 5817 5.537188 TGCTGGCGTCAATCTTTTTATTTT 58.463 33.333 0.00 0.00 0.00 1.82
2643 5818 6.682746 TGCTGGCGTCAATCTTTTTATTTTA 58.317 32.000 0.00 0.00 0.00 1.52
2644 5819 6.806249 TGCTGGCGTCAATCTTTTTATTTTAG 59.194 34.615 0.00 0.00 0.00 1.85
2645 5820 6.237569 GCTGGCGTCAATCTTTTTATTTTAGC 60.238 38.462 0.00 0.00 0.00 3.09
2646 5821 6.682746 TGGCGTCAATCTTTTTATTTTAGCA 58.317 32.000 0.00 0.00 0.00 3.49
2647 5822 7.148641 TGGCGTCAATCTTTTTATTTTAGCAA 58.851 30.769 0.00 0.00 0.00 3.91
2648 5823 7.115663 TGGCGTCAATCTTTTTATTTTAGCAAC 59.884 33.333 0.00 0.00 0.00 4.17
2649 5824 7.411480 GGCGTCAATCTTTTTATTTTAGCAACC 60.411 37.037 0.00 0.00 0.00 3.77
2650 5825 7.115663 GCGTCAATCTTTTTATTTTAGCAACCA 59.884 33.333 0.00 0.00 0.00 3.67
2651 5826 8.638565 CGTCAATCTTTTTATTTTAGCAACCAG 58.361 33.333 0.00 0.00 0.00 4.00
2652 5827 8.435430 GTCAATCTTTTTATTTTAGCAACCAGC 58.565 33.333 0.00 0.00 46.19 4.85
2670 5845 3.322514 CGGGAGCCTTGTCTTTTCA 57.677 52.632 0.00 0.00 0.00 2.69
2671 5846 1.826385 CGGGAGCCTTGTCTTTTCAT 58.174 50.000 0.00 0.00 0.00 2.57
2672 5847 2.162681 CGGGAGCCTTGTCTTTTCATT 58.837 47.619 0.00 0.00 0.00 2.57
2673 5848 3.343617 CGGGAGCCTTGTCTTTTCATTA 58.656 45.455 0.00 0.00 0.00 1.90
2674 5849 3.375299 CGGGAGCCTTGTCTTTTCATTAG 59.625 47.826 0.00 0.00 0.00 1.73
2675 5850 3.696548 GGGAGCCTTGTCTTTTCATTAGG 59.303 47.826 0.00 0.00 0.00 2.69
2676 5851 3.696548 GGAGCCTTGTCTTTTCATTAGGG 59.303 47.826 0.00 0.00 0.00 3.53
2677 5852 3.092301 AGCCTTGTCTTTTCATTAGGGC 58.908 45.455 0.00 0.00 37.57 5.19
2678 5853 2.825532 GCCTTGTCTTTTCATTAGGGCA 59.174 45.455 0.00 0.00 37.30 5.36
2679 5854 3.119352 GCCTTGTCTTTTCATTAGGGCAG 60.119 47.826 0.00 0.00 37.30 4.85
2680 5855 4.082125 CCTTGTCTTTTCATTAGGGCAGT 58.918 43.478 0.00 0.00 0.00 4.40
2681 5856 4.082571 CCTTGTCTTTTCATTAGGGCAGTG 60.083 45.833 0.00 0.00 0.00 3.66
2682 5857 2.819608 TGTCTTTTCATTAGGGCAGTGC 59.180 45.455 6.55 6.55 0.00 4.40
2717 5892 2.525629 TGCCTCCCAACCGTCAGA 60.526 61.111 0.00 0.00 0.00 3.27
2725 5900 1.513158 CAACCGTCAGATCGAGCCT 59.487 57.895 0.00 0.00 0.00 4.58
2735 5910 0.943359 GATCGAGCCTTCCTGCATCG 60.943 60.000 0.00 0.00 35.03 3.84
2738 5913 1.519719 GAGCCTTCCTGCATCGTCT 59.480 57.895 0.00 0.00 0.00 4.18
2747 5922 3.628008 TCCTGCATCGTCTTCTACCTTA 58.372 45.455 0.00 0.00 0.00 2.69
2748 5923 4.215908 TCCTGCATCGTCTTCTACCTTAT 58.784 43.478 0.00 0.00 0.00 1.73
2753 5928 3.687572 TCGTCTTCTACCTTATGCGTC 57.312 47.619 0.00 0.00 0.00 5.19
2776 5951 4.000988 GTCTTTTCCCTCGATAACAAGCA 58.999 43.478 0.00 0.00 0.00 3.91
2781 5956 2.167693 TCCCTCGATAACAAGCACGATT 59.832 45.455 0.00 0.00 34.41 3.34
2783 5958 2.285220 CCTCGATAACAAGCACGATTGG 59.715 50.000 0.00 0.00 34.36 3.16
2786 5961 2.872245 CGATAACAAGCACGATTGGGAT 59.128 45.455 0.00 0.00 34.36 3.85
2794 5969 0.392863 CACGATTGGGATGAGCCACA 60.393 55.000 0.00 0.00 38.95 4.17
2795 5970 0.107508 ACGATTGGGATGAGCCACAG 60.108 55.000 0.00 0.00 38.95 3.66
2802 5977 2.033141 ATGAGCCACAGCAAGCGT 59.967 55.556 0.00 0.00 43.56 5.07
2804 5979 2.666190 GAGCCACAGCAAGCGTCA 60.666 61.111 0.00 0.00 43.56 4.35
2838 6013 2.294078 ACAGCTGTGGGCCTCTACC 61.294 63.158 20.97 0.00 43.05 3.18
2848 6023 3.885521 CCTCTACCCGCCGTCGTC 61.886 72.222 0.00 0.00 0.00 4.20
2849 6024 3.885521 CTCTACCCGCCGTCGTCC 61.886 72.222 0.00 0.00 0.00 4.79
2875 6050 3.272334 ATTCGCCATTCGCCGCTC 61.272 61.111 0.00 0.00 38.27 5.03
2893 6068 4.926207 GACCTAACCGTCGCCATT 57.074 55.556 0.00 0.00 0.00 3.16
2939 6114 2.780040 CCATGGCCCATCCCCTCT 60.780 66.667 0.00 0.00 0.00 3.69
2944 6119 1.075659 GGCCCATCCCCTCTTATGC 59.924 63.158 0.00 0.00 0.00 3.14
3002 6178 2.804090 GTCCGTGGAGTTCGTCGC 60.804 66.667 0.00 0.00 0.00 5.19
3056 6232 2.439409 CCAGTTGCATCAATGGTGAGA 58.561 47.619 0.00 0.00 37.14 3.27
3078 6254 1.978782 GCCGATTCAAGCTTTTTGTCG 59.021 47.619 0.00 4.81 0.00 4.35
3082 6258 0.593773 TTCAAGCTTTTTGTCGCGGC 60.594 50.000 2.29 2.29 0.00 6.53
3100 6276 2.514803 GGCCTCTGGTTGAAGCTTTTA 58.485 47.619 0.00 0.00 32.89 1.52
3105 6281 5.563671 GCCTCTGGTTGAAGCTTTTAAGAAG 60.564 44.000 0.00 0.91 0.00 2.85
3107 6283 6.039829 CCTCTGGTTGAAGCTTTTAAGAAGTT 59.960 38.462 0.00 0.00 0.00 2.66
3108 6284 7.404671 TCTGGTTGAAGCTTTTAAGAAGTTT 57.595 32.000 0.00 0.00 0.00 2.66
3109 6285 7.836842 TCTGGTTGAAGCTTTTAAGAAGTTTT 58.163 30.769 0.00 0.00 0.00 2.43
3110 6286 8.311109 TCTGGTTGAAGCTTTTAAGAAGTTTTT 58.689 29.630 0.00 0.00 0.00 1.94
3111 6287 8.474006 TGGTTGAAGCTTTTAAGAAGTTTTTC 57.526 30.769 0.00 0.00 0.00 2.29
3112 6288 8.091449 TGGTTGAAGCTTTTAAGAAGTTTTTCA 58.909 29.630 0.00 0.00 35.70 2.69
3113 6289 8.931775 GGTTGAAGCTTTTAAGAAGTTTTTCAA 58.068 29.630 0.00 0.00 35.70 2.69
3197 6373 0.460284 ATTCTACCAGCTTCACCGCG 60.460 55.000 0.00 0.00 34.40 6.46
3345 8137 1.477553 TTTGCTGGAATGGGCATCTC 58.522 50.000 0.00 0.00 38.30 2.75
3355 8147 0.252761 TGGGCATCTCGATTTGCTGA 59.747 50.000 16.43 0.00 38.88 4.26
3381 8173 7.701539 ACCAGTGATTAAAATTGCTACATCA 57.298 32.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.853330 CCGCGACCGAGCAACATG 61.853 66.667 8.23 0.00 36.85 3.21
8 9 4.488136 TAGCTACCCCGCGACCGA 62.488 66.667 8.23 0.00 36.29 4.69
9 10 3.962421 CTAGCTACCCCGCGACCG 61.962 72.222 8.23 0.00 34.40 4.79
10 11 2.517875 TCTAGCTACCCCGCGACC 60.518 66.667 8.23 0.00 34.40 4.79
11 12 2.720605 GTCTAGCTACCCCGCGAC 59.279 66.667 8.23 0.00 34.40 5.19
12 13 2.898840 CGTCTAGCTACCCCGCGA 60.899 66.667 8.23 0.00 34.40 5.87
13 14 4.625781 GCGTCTAGCTACCCCGCG 62.626 72.222 0.00 0.00 44.04 6.46
14 15 4.625781 CGCGTCTAGCTACCCCGC 62.626 72.222 13.95 13.95 45.59 6.13
15 16 2.185103 GATCGCGTCTAGCTACCCCG 62.185 65.000 5.77 0.00 45.59 5.73
16 17 1.580437 GATCGCGTCTAGCTACCCC 59.420 63.158 5.77 0.00 45.59 4.95
17 18 1.580437 GGATCGCGTCTAGCTACCC 59.420 63.158 5.77 0.00 45.59 3.69
18 19 0.890090 AGGGATCGCGTCTAGCTACC 60.890 60.000 5.77 0.00 45.59 3.18
19 20 1.805869 TAGGGATCGCGTCTAGCTAC 58.194 55.000 5.77 0.00 45.59 3.58
20 21 2.783609 ATAGGGATCGCGTCTAGCTA 57.216 50.000 5.77 0.00 45.59 3.32
21 22 1.813786 GAATAGGGATCGCGTCTAGCT 59.186 52.381 5.77 0.00 45.59 3.32
22 23 1.135344 GGAATAGGGATCGCGTCTAGC 60.135 57.143 5.77 0.00 43.95 3.42
23 24 2.162608 CAGGAATAGGGATCGCGTCTAG 59.837 54.545 5.77 0.00 0.00 2.43
24 25 2.160205 CAGGAATAGGGATCGCGTCTA 58.840 52.381 5.77 4.91 0.00 2.59
25 26 0.962489 CAGGAATAGGGATCGCGTCT 59.038 55.000 5.77 2.62 0.00 4.18
26 27 0.959553 TCAGGAATAGGGATCGCGTC 59.040 55.000 5.77 2.75 0.00 5.19
27 28 1.546476 GATCAGGAATAGGGATCGCGT 59.454 52.381 5.77 0.00 0.00 6.01
28 29 1.821753 AGATCAGGAATAGGGATCGCG 59.178 52.381 0.00 0.00 41.71 5.87
29 30 5.127845 TCAATAGATCAGGAATAGGGATCGC 59.872 44.000 0.54 0.54 41.71 4.58
30 31 6.183360 CCTCAATAGATCAGGAATAGGGATCG 60.183 46.154 0.00 0.00 41.71 3.69
31 32 6.900186 TCCTCAATAGATCAGGAATAGGGATC 59.100 42.308 0.00 0.00 38.13 3.36
32 33 6.820205 TCCTCAATAGATCAGGAATAGGGAT 58.180 40.000 0.00 0.00 33.12 3.85
33 34 6.233045 TCCTCAATAGATCAGGAATAGGGA 57.767 41.667 0.00 0.00 33.12 4.20
34 35 6.728164 TCTTCCTCAATAGATCAGGAATAGGG 59.272 42.308 10.91 2.05 43.83 3.53
35 36 7.093377 CCTCTTCCTCAATAGATCAGGAATAGG 60.093 44.444 20.04 20.04 46.33 2.57
36 37 7.579339 GCCTCTTCCTCAATAGATCAGGAATAG 60.579 44.444 10.91 12.24 43.83 1.73
37 38 6.212388 GCCTCTTCCTCAATAGATCAGGAATA 59.788 42.308 10.91 4.83 43.83 1.75
38 39 5.012975 GCCTCTTCCTCAATAGATCAGGAAT 59.987 44.000 10.91 0.00 43.83 3.01
39 40 4.346418 GCCTCTTCCTCAATAGATCAGGAA 59.654 45.833 10.23 10.23 42.87 3.36
40 41 3.900601 GCCTCTTCCTCAATAGATCAGGA 59.099 47.826 0.00 0.00 34.31 3.86
41 42 3.903090 AGCCTCTTCCTCAATAGATCAGG 59.097 47.826 0.00 0.00 0.00 3.86
42 43 5.549742 AAGCCTCTTCCTCAATAGATCAG 57.450 43.478 0.00 0.00 0.00 2.90
43 44 5.190528 ACAAAGCCTCTTCCTCAATAGATCA 59.809 40.000 0.00 0.00 0.00 2.92
44 45 5.679601 ACAAAGCCTCTTCCTCAATAGATC 58.320 41.667 0.00 0.00 0.00 2.75
45 46 5.707066 ACAAAGCCTCTTCCTCAATAGAT 57.293 39.130 0.00 0.00 0.00 1.98
46 47 5.505181 AACAAAGCCTCTTCCTCAATAGA 57.495 39.130 0.00 0.00 0.00 1.98
47 48 5.586643 GGTAACAAAGCCTCTTCCTCAATAG 59.413 44.000 0.00 0.00 0.00 1.73
48 49 5.497474 GGTAACAAAGCCTCTTCCTCAATA 58.503 41.667 0.00 0.00 0.00 1.90
49 50 4.336280 GGTAACAAAGCCTCTTCCTCAAT 58.664 43.478 0.00 0.00 0.00 2.57
50 51 3.751518 GGTAACAAAGCCTCTTCCTCAA 58.248 45.455 0.00 0.00 0.00 3.02
51 52 3.418684 GGTAACAAAGCCTCTTCCTCA 57.581 47.619 0.00 0.00 0.00 3.86
66 67 8.135529 GCTTCCTAATCCATTTAACATGGTAAC 58.864 37.037 1.72 0.00 40.06 2.50
67 68 7.012894 CGCTTCCTAATCCATTTAACATGGTAA 59.987 37.037 0.00 0.00 40.06 2.85
68 69 6.485313 CGCTTCCTAATCCATTTAACATGGTA 59.515 38.462 13.15 0.00 40.06 3.25
69 70 5.299279 CGCTTCCTAATCCATTTAACATGGT 59.701 40.000 13.15 0.00 40.06 3.55
70 71 5.299279 ACGCTTCCTAATCCATTTAACATGG 59.701 40.000 0.00 9.25 40.48 3.66
71 72 6.377327 ACGCTTCCTAATCCATTTAACATG 57.623 37.500 0.00 0.00 0.00 3.21
72 73 6.601613 TCAACGCTTCCTAATCCATTTAACAT 59.398 34.615 0.00 0.00 0.00 2.71
73 74 5.941058 TCAACGCTTCCTAATCCATTTAACA 59.059 36.000 0.00 0.00 0.00 2.41
74 75 6.431198 TCAACGCTTCCTAATCCATTTAAC 57.569 37.500 0.00 0.00 0.00 2.01
75 76 6.127842 GGTTCAACGCTTCCTAATCCATTTAA 60.128 38.462 0.00 0.00 0.00 1.52
76 77 5.355910 GGTTCAACGCTTCCTAATCCATTTA 59.644 40.000 0.00 0.00 0.00 1.40
77 78 4.157840 GGTTCAACGCTTCCTAATCCATTT 59.842 41.667 0.00 0.00 0.00 2.32
78 79 3.694566 GGTTCAACGCTTCCTAATCCATT 59.305 43.478 0.00 0.00 0.00 3.16
79 80 3.279434 GGTTCAACGCTTCCTAATCCAT 58.721 45.455 0.00 0.00 0.00 3.41
80 81 2.617021 GGGTTCAACGCTTCCTAATCCA 60.617 50.000 0.00 0.00 0.00 3.41
81 82 2.014857 GGGTTCAACGCTTCCTAATCC 58.985 52.381 0.00 0.00 0.00 3.01
82 83 2.987232 AGGGTTCAACGCTTCCTAATC 58.013 47.619 0.16 0.00 38.28 1.75
83 84 3.434940 AAGGGTTCAACGCTTCCTAAT 57.565 42.857 13.89 0.00 46.59 1.73
84 85 2.943036 AAGGGTTCAACGCTTCCTAA 57.057 45.000 13.89 0.00 46.59 2.69
96 97 1.228552 TGGCCTGAGCAAAGGGTTC 60.229 57.895 3.32 0.00 42.56 3.62
109 110 8.435931 TGATTCTATATATACAAGTGTGGCCT 57.564 34.615 3.32 0.00 0.00 5.19
114 115 9.371136 CGGCATTGATTCTATATATACAAGTGT 57.629 33.333 0.00 0.00 0.00 3.55
117 118 8.820933 CCACGGCATTGATTCTATATATACAAG 58.179 37.037 0.00 0.00 0.00 3.16
130 131 1.832883 TGTAAGCCACGGCATTGATT 58.167 45.000 11.35 0.00 44.88 2.57
153 154 1.332375 GAACCATCTCTCTCGGTCTCG 59.668 57.143 0.00 0.00 37.82 4.04
158 159 2.422479 TGTAACGAACCATCTCTCTCGG 59.578 50.000 0.00 0.00 35.64 4.63
161 162 4.590918 TCTCTGTAACGAACCATCTCTCT 58.409 43.478 0.00 0.00 0.00 3.10
162 163 4.966965 TCTCTGTAACGAACCATCTCTC 57.033 45.455 0.00 0.00 0.00 3.20
163 164 5.061920 GTTCTCTGTAACGAACCATCTCT 57.938 43.478 0.00 0.00 34.83 3.10
178 3227 4.038361 CCTCATGTAACGATCGTTCTCTG 58.962 47.826 34.78 26.69 39.31 3.35
180 3229 4.288670 TCCTCATGTAACGATCGTTCTC 57.711 45.455 34.78 26.82 39.31 2.87
196 3245 8.498575 TCTCTATCTCTTCTTCTGTTATCCTCA 58.501 37.037 0.00 0.00 0.00 3.86
207 3256 8.621286 CCTTGTACTCTTCTCTATCTCTTCTTC 58.379 40.741 0.00 0.00 0.00 2.87
289 3338 1.602191 GCGGTTTCATTGCTTACACG 58.398 50.000 0.00 0.00 0.00 4.49
290 3339 1.069500 ACGCGGTTTCATTGCTTACAC 60.069 47.619 12.47 0.00 0.00 2.90
373 3422 6.514376 GCGGTTTTCATCCTTCAACTCTAAAA 60.514 38.462 0.00 0.00 0.00 1.52
389 3438 5.935206 TCTATTAATCACAGTGCGGTTTTCA 59.065 36.000 0.00 0.00 0.00 2.69
427 3476 4.570772 TGCGGTGCTAATGAGATAAAAGTC 59.429 41.667 0.00 0.00 0.00 3.01
442 3491 2.879826 GCAATAAAAGATTGCGGTGCT 58.120 42.857 6.52 0.00 43.80 4.40
459 3508 9.248291 GAAACTTTAATTCTGAATCAACTGCAA 57.752 29.630 2.92 0.00 0.00 4.08
506 3555 4.771903 TGAGTGTGTTTACTTGCCTACAA 58.228 39.130 0.00 0.00 0.00 2.41
520 3569 4.574421 TCGTGAATCATTTGTTGAGTGTGT 59.426 37.500 0.00 0.00 37.89 3.72
524 3573 7.490962 TTACTTCGTGAATCATTTGTTGAGT 57.509 32.000 0.00 0.00 37.89 3.41
525 3574 8.955061 AATTACTTCGTGAATCATTTGTTGAG 57.045 30.769 0.00 0.00 37.89 3.02
609 3658 9.400638 CCTTGCGTAAATACAAAAAGAATACAA 57.599 29.630 0.00 0.00 0.00 2.41
610 3659 8.569641 ACCTTGCGTAAATACAAAAAGAATACA 58.430 29.630 0.00 0.00 0.00 2.29
611 3660 8.959734 ACCTTGCGTAAATACAAAAAGAATAC 57.040 30.769 0.00 0.00 0.00 1.89
613 3662 9.968870 TTTACCTTGCGTAAATACAAAAAGAAT 57.031 25.926 0.00 0.00 41.10 2.40
614 3663 9.235537 GTTTACCTTGCGTAAATACAAAAAGAA 57.764 29.630 0.00 0.00 46.11 2.52
615 3664 8.404000 TGTTTACCTTGCGTAAATACAAAAAGA 58.596 29.630 0.00 0.00 46.11 2.52
616 3665 8.563289 TGTTTACCTTGCGTAAATACAAAAAG 57.437 30.769 0.00 0.00 46.11 2.27
683 3732 1.065551 TGATCTCTATCCGTGTGTGCG 59.934 52.381 0.00 0.00 0.00 5.34
686 3735 1.676529 CCGTGATCTCTATCCGTGTGT 59.323 52.381 0.00 0.00 0.00 3.72
695 3744 0.963856 ACGTGCACCCGTGATCTCTA 60.964 55.000 12.15 0.00 40.08 2.43
705 3754 0.955905 AATTTGTACCACGTGCACCC 59.044 50.000 10.91 0.00 0.00 4.61
786 3845 4.517285 GAGATGGGAGCTGTTGTGATTTA 58.483 43.478 0.00 0.00 0.00 1.40
854 3913 7.611821 TTTAAAATTAACGCTACACACAAGC 57.388 32.000 0.00 0.00 36.60 4.01
855 3914 9.987901 CAATTTAAAATTAACGCTACACACAAG 57.012 29.630 0.00 0.00 0.00 3.16
856 3915 8.969267 CCAATTTAAAATTAACGCTACACACAA 58.031 29.630 0.00 0.00 0.00 3.33
858 3917 8.510132 ACCAATTTAAAATTAACGCTACACAC 57.490 30.769 0.00 0.00 0.00 3.82
859 3918 8.569641 AGACCAATTTAAAATTAACGCTACACA 58.430 29.630 0.00 0.00 0.00 3.72
860 3919 8.959734 AGACCAATTTAAAATTAACGCTACAC 57.040 30.769 0.00 0.00 0.00 2.90
861 3920 8.238631 GGAGACCAATTTAAAATTAACGCTACA 58.761 33.333 0.00 0.00 0.00 2.74
863 3922 7.119553 ACGGAGACCAATTTAAAATTAACGCTA 59.880 33.333 0.00 0.00 0.00 4.26
886 3947 3.314541 AAACTAACACTCCAGCTACGG 57.685 47.619 0.00 0.00 0.00 4.02
909 3970 2.284684 TCGCGCAAGTAACGAAGAAAAA 59.715 40.909 8.75 0.00 41.68 1.94
910 3971 1.859703 TCGCGCAAGTAACGAAGAAAA 59.140 42.857 8.75 0.00 41.68 2.29
911 3972 1.489574 TCGCGCAAGTAACGAAGAAA 58.510 45.000 8.75 0.00 41.68 2.52
912 3973 1.388768 CATCGCGCAAGTAACGAAGAA 59.611 47.619 8.75 0.00 39.56 2.52
913 3974 0.989164 CATCGCGCAAGTAACGAAGA 59.011 50.000 8.75 0.00 39.56 2.87
914 3975 0.713883 ACATCGCGCAAGTAACGAAG 59.286 50.000 8.75 0.00 39.56 3.79
915 3976 0.436913 CACATCGCGCAAGTAACGAA 59.563 50.000 8.75 0.00 39.56 3.85
916 3977 0.665068 ACACATCGCGCAAGTAACGA 60.665 50.000 8.75 0.00 40.53 3.85
917 3978 0.246757 GACACATCGCGCAAGTAACG 60.247 55.000 8.75 0.00 41.68 3.18
918 3979 0.094730 GGACACATCGCGCAAGTAAC 59.905 55.000 8.75 0.06 41.68 2.50
919 3980 0.319986 TGGACACATCGCGCAAGTAA 60.320 50.000 8.75 0.00 41.68 2.24
920 3981 0.108377 ATGGACACATCGCGCAAGTA 60.108 50.000 8.75 0.00 32.96 2.24
921 3982 0.108377 TATGGACACATCGCGCAAGT 60.108 50.000 8.75 0.00 38.53 3.16
922 3983 1.220529 ATATGGACACATCGCGCAAG 58.779 50.000 8.75 0.00 38.53 4.01
923 3984 2.517650 TATATGGACACATCGCGCAA 57.482 45.000 8.75 0.00 38.53 4.85
924 3985 2.741759 ATATATGGACACATCGCGCA 57.258 45.000 8.75 0.00 38.53 6.09
925 3986 3.770666 ACTATATATGGACACATCGCGC 58.229 45.455 0.00 0.00 38.53 6.86
926 3987 4.962151 CGTACTATATATGGACACATCGCG 59.038 45.833 0.00 0.00 38.53 5.87
927 3988 5.877031 ACGTACTATATATGGACACATCGC 58.123 41.667 2.68 0.00 38.53 4.58
928 3989 8.194433 AGTACGTACTATATATGGACACATCG 57.806 38.462 26.36 1.74 35.15 3.84
948 4009 9.976255 GCAGTGAGTATTAAGATCTATAGTACG 57.024 37.037 0.00 0.00 0.00 3.67
954 4015 8.918116 TGACTTGCAGTGAGTATTAAGATCTAT 58.082 33.333 0.00 0.00 0.00 1.98
955 4016 8.191446 GTGACTTGCAGTGAGTATTAAGATCTA 58.809 37.037 0.00 0.00 0.00 1.98
956 4017 7.038659 GTGACTTGCAGTGAGTATTAAGATCT 58.961 38.462 0.00 0.00 0.00 2.75
957 4018 6.813649 TGTGACTTGCAGTGAGTATTAAGATC 59.186 38.462 0.00 0.00 0.00 2.75
958 4019 6.701340 TGTGACTTGCAGTGAGTATTAAGAT 58.299 36.000 0.00 0.00 0.00 2.40
959 4020 6.096673 TGTGACTTGCAGTGAGTATTAAGA 57.903 37.500 0.00 0.00 0.00 2.10
960 4021 6.202762 TGTTGTGACTTGCAGTGAGTATTAAG 59.797 38.462 0.00 0.00 0.00 1.85
961 4022 6.018262 GTGTTGTGACTTGCAGTGAGTATTAA 60.018 38.462 0.00 0.00 0.00 1.40
962 4023 5.465390 GTGTTGTGACTTGCAGTGAGTATTA 59.535 40.000 0.00 0.00 0.00 0.98
963 4024 4.273480 GTGTTGTGACTTGCAGTGAGTATT 59.727 41.667 0.00 0.00 0.00 1.89
964 4025 3.809832 GTGTTGTGACTTGCAGTGAGTAT 59.190 43.478 0.00 0.00 0.00 2.12
965 4026 3.118775 AGTGTTGTGACTTGCAGTGAGTA 60.119 43.478 0.00 0.00 0.00 2.59
966 4027 2.009774 GTGTTGTGACTTGCAGTGAGT 58.990 47.619 0.00 0.00 0.00 3.41
967 4028 2.031314 CAGTGTTGTGACTTGCAGTGAG 59.969 50.000 0.00 0.00 35.07 3.51
1019 4080 1.153997 GCCACGAGGAAGAGACGTC 60.154 63.158 7.70 7.70 38.18 4.34
1092 4153 1.493311 CGAGTCGCCAAAGCTGAAC 59.507 57.895 0.00 0.00 36.60 3.18
1167 4228 3.976902 GAAGGTGTCGCCGTACGGG 62.977 68.421 33.98 23.55 43.89 5.28
1179 4240 2.434359 GGGACGCCGAAGAAGGTG 60.434 66.667 0.00 0.00 46.65 4.00
1248 4313 8.079211 ACTATATGTATATTGCCGAGGTCATT 57.921 34.615 0.00 0.00 0.00 2.57
1264 4329 8.013947 GCTAATCAACGAGACGAACTATATGTA 58.986 37.037 0.00 0.00 0.00 2.29
1265 4330 6.856938 GCTAATCAACGAGACGAACTATATGT 59.143 38.462 0.00 0.00 0.00 2.29
1267 4332 6.967135 TGCTAATCAACGAGACGAACTATAT 58.033 36.000 0.00 0.00 0.00 0.86
1268 4333 6.367686 TGCTAATCAACGAGACGAACTATA 57.632 37.500 0.00 0.00 0.00 1.31
1269 4334 5.244785 TGCTAATCAACGAGACGAACTAT 57.755 39.130 0.00 0.00 0.00 2.12
1272 4337 3.975093 GTTGCTAATCAACGAGACGAAC 58.025 45.455 0.00 0.00 44.71 3.95
1303 4368 9.381033 CTGAATCAGACAATGAGAACTAAAGAT 57.619 33.333 3.77 0.00 42.53 2.40
1304 4369 8.370940 ACTGAATCAGACAATGAGAACTAAAGA 58.629 33.333 18.20 0.00 42.53 2.52
1305 4370 8.545229 ACTGAATCAGACAATGAGAACTAAAG 57.455 34.615 18.20 0.00 42.53 1.85
1306 4371 8.777413 CAACTGAATCAGACAATGAGAACTAAA 58.223 33.333 18.20 0.00 42.53 1.85
1324 4440 1.377725 CCCAGCGCCTCAACTGAAT 60.378 57.895 2.29 0.00 35.90 2.57
1418 4534 2.125912 CCAAGAGCCGTCGACCTG 60.126 66.667 10.58 2.39 0.00 4.00
1430 4546 1.677552 GAAGAACTCCGGGCCAAGA 59.322 57.895 4.39 0.00 0.00 3.02
1463 4579 3.027170 GACGGGCATGAACAGCGTG 62.027 63.158 0.00 0.00 36.56 5.34
1510 4626 2.474816 CGGCTAGCTGTAGAACATTCC 58.525 52.381 15.85 0.00 0.00 3.01
1573 4689 6.486253 TGACTTGCTACTTTGCTAAATCTG 57.514 37.500 0.00 0.00 0.00 2.90
1593 4709 8.268850 ACATATGGTGAAAGTAGTCAATTGAC 57.731 34.615 27.69 27.69 45.08 3.18
1687 4823 3.054508 GGATTCCCATCTCTCCCATCATC 60.055 52.174 0.00 0.00 0.00 2.92
1717 4853 3.679917 GCTTTCCGGTGATGAAGATGAGA 60.680 47.826 0.00 0.00 0.00 3.27
1750 4886 1.064296 CACGAAGGTCCGGATCTCG 59.936 63.158 25.32 25.32 38.88 4.04
1839 4976 7.174253 TGTTACTCCGCTTTCTTCATATTTGTT 59.826 33.333 0.00 0.00 0.00 2.83
1842 4979 7.552687 TCATGTTACTCCGCTTTCTTCATATTT 59.447 33.333 0.00 0.00 0.00 1.40
1844 4981 6.480320 GTCATGTTACTCCGCTTTCTTCATAT 59.520 38.462 0.00 0.00 0.00 1.78
1845 4982 5.810587 GTCATGTTACTCCGCTTTCTTCATA 59.189 40.000 0.00 0.00 0.00 2.15
1846 4983 4.631813 GTCATGTTACTCCGCTTTCTTCAT 59.368 41.667 0.00 0.00 0.00 2.57
1848 4985 3.994392 TGTCATGTTACTCCGCTTTCTTC 59.006 43.478 0.00 0.00 0.00 2.87
1849 4986 4.002906 TGTCATGTTACTCCGCTTTCTT 57.997 40.909 0.00 0.00 0.00 2.52
1850 4987 3.678056 TGTCATGTTACTCCGCTTTCT 57.322 42.857 0.00 0.00 0.00 2.52
1851 4988 3.063997 CCATGTCATGTTACTCCGCTTTC 59.936 47.826 11.84 0.00 0.00 2.62
1854 4991 1.134401 CCCATGTCATGTTACTCCGCT 60.134 52.381 11.84 0.00 0.00 5.52
1855 4992 1.134521 TCCCATGTCATGTTACTCCGC 60.135 52.381 11.84 0.00 0.00 5.54
1856 4993 2.093711 TGTCCCATGTCATGTTACTCCG 60.094 50.000 11.84 0.00 0.00 4.63
1858 4995 3.937814 TGTGTCCCATGTCATGTTACTC 58.062 45.455 11.84 9.96 0.00 2.59
1859 4996 4.264253 CATGTGTCCCATGTCATGTTACT 58.736 43.478 11.84 0.00 44.96 2.24
1860 4997 4.621068 CATGTGTCCCATGTCATGTTAC 57.379 45.455 11.84 9.39 44.96 2.50
1874 5029 1.661341 GATCACCTCCTGCATGTGTC 58.339 55.000 0.00 0.00 0.00 3.67
1875 5030 0.107993 CGATCACCTCCTGCATGTGT 60.108 55.000 0.00 0.00 0.00 3.72
1876 5031 0.176449 TCGATCACCTCCTGCATGTG 59.824 55.000 0.00 0.00 0.00 3.21
1877 5032 1.126488 ATCGATCACCTCCTGCATGT 58.874 50.000 0.00 0.00 0.00 3.21
1878 5033 1.509703 CATCGATCACCTCCTGCATG 58.490 55.000 0.00 0.00 0.00 4.06
1953 5116 2.496341 TCGAAGAGGGCGAGCATG 59.504 61.111 0.00 0.00 33.33 4.06
1983 5149 2.652530 GTCGCCCGGTTGTAGTCA 59.347 61.111 0.00 0.00 0.00 3.41
2381 5547 1.915266 CTGGAGGAGAGGTGTGCCA 60.915 63.158 0.00 0.00 37.19 4.92
2386 5552 0.396974 AGCTAGCTGGAGGAGAGGTG 60.397 60.000 18.57 0.00 0.00 4.00
2392 5558 2.042464 CCAACATAGCTAGCTGGAGGA 58.958 52.381 27.68 7.09 0.00 3.71
2433 5608 1.227263 ACAATACTAGGCCGCGCAG 60.227 57.895 8.75 0.00 0.00 5.18
2448 5623 4.393680 GGGAAATGCGTACAAGATACACAA 59.606 41.667 0.00 0.00 0.00 3.33
2456 5631 2.343101 TCGAAGGGAAATGCGTACAAG 58.657 47.619 0.00 0.00 0.00 3.16
2457 5632 2.459060 TCGAAGGGAAATGCGTACAA 57.541 45.000 0.00 0.00 0.00 2.41
2480 5655 2.222217 ATCGAAGCGCGCTACGTTC 61.222 57.895 36.73 26.29 46.11 3.95
2501 5676 1.749634 ACTGAGTATGTAGCACCGGAC 59.250 52.381 9.46 0.00 0.00 4.79
2511 5686 9.194972 TCAGAGATATTCTCAAACTGAGTATGT 57.805 33.333 7.24 0.00 45.73 2.29
2512 5687 9.681692 CTCAGAGATATTCTCAAACTGAGTATG 57.318 37.037 0.00 0.00 45.73 2.39
2513 5688 8.859090 CCTCAGAGATATTCTCAAACTGAGTAT 58.141 37.037 3.62 2.82 45.73 2.12
2545 5720 7.095102 CCTGGCCAGTTTGAAAAGAATAATTTG 60.095 37.037 30.63 4.98 0.00 2.32
2547 5722 6.043127 ACCTGGCCAGTTTGAAAAGAATAATT 59.957 34.615 30.63 0.00 0.00 1.40
2554 5729 2.955660 TGTACCTGGCCAGTTTGAAAAG 59.044 45.455 30.63 15.25 0.00 2.27
2555 5730 3.019799 TGTACCTGGCCAGTTTGAAAA 57.980 42.857 30.63 7.26 0.00 2.29
2556 5731 2.738587 TGTACCTGGCCAGTTTGAAA 57.261 45.000 30.63 8.88 0.00 2.69
2557 5732 2.092103 ACTTGTACCTGGCCAGTTTGAA 60.092 45.455 30.63 16.38 0.00 2.69
2558 5733 1.493022 ACTTGTACCTGGCCAGTTTGA 59.507 47.619 30.63 10.36 0.00 2.69
2559 5734 1.880027 GACTTGTACCTGGCCAGTTTG 59.120 52.381 30.63 18.21 0.00 2.93
2560 5735 1.542547 CGACTTGTACCTGGCCAGTTT 60.543 52.381 30.63 19.46 0.00 2.66
2561 5736 0.034896 CGACTTGTACCTGGCCAGTT 59.965 55.000 30.63 20.75 0.00 3.16
2562 5737 0.830444 TCGACTTGTACCTGGCCAGT 60.830 55.000 30.63 20.39 0.00 4.00
2563 5738 0.108615 CTCGACTTGTACCTGGCCAG 60.109 60.000 26.87 26.87 0.00 4.85
2564 5739 0.830444 ACTCGACTTGTACCTGGCCA 60.830 55.000 4.71 4.71 0.00 5.36
2565 5740 0.389948 CACTCGACTTGTACCTGGCC 60.390 60.000 0.00 0.00 0.00 5.36
2566 5741 0.601558 TCACTCGACTTGTACCTGGC 59.398 55.000 0.00 0.00 0.00 4.85
2567 5742 3.380479 TTTCACTCGACTTGTACCTGG 57.620 47.619 0.00 0.00 0.00 4.45
2568 5743 4.809426 AGTTTTTCACTCGACTTGTACCTG 59.191 41.667 0.00 0.00 0.00 4.00
2569 5744 4.809426 CAGTTTTTCACTCGACTTGTACCT 59.191 41.667 0.00 0.00 30.92 3.08
2570 5745 4.807304 TCAGTTTTTCACTCGACTTGTACC 59.193 41.667 0.00 0.00 30.92 3.34
2571 5746 5.961395 TCAGTTTTTCACTCGACTTGTAC 57.039 39.130 0.00 0.00 30.92 2.90
2572 5747 6.971527 TTTCAGTTTTTCACTCGACTTGTA 57.028 33.333 0.00 0.00 30.92 2.41
2573 5748 5.873179 TTTCAGTTTTTCACTCGACTTGT 57.127 34.783 0.00 0.00 30.92 3.16
2574 5749 6.083630 TGTTTTCAGTTTTTCACTCGACTTG 58.916 36.000 0.00 0.00 30.92 3.16
2575 5750 6.249035 TGTTTTCAGTTTTTCACTCGACTT 57.751 33.333 0.00 0.00 30.92 3.01
2576 5751 5.873179 TGTTTTCAGTTTTTCACTCGACT 57.127 34.783 0.00 0.00 30.92 4.18
2588 5763 8.830580 CGAGTGATCCAATATATGTTTTCAGTT 58.169 33.333 0.00 0.00 0.00 3.16
2589 5764 7.442364 CCGAGTGATCCAATATATGTTTTCAGT 59.558 37.037 0.00 0.00 0.00 3.41
2590 5765 7.442364 ACCGAGTGATCCAATATATGTTTTCAG 59.558 37.037 0.00 0.00 0.00 3.02
2591 5766 7.279615 ACCGAGTGATCCAATATATGTTTTCA 58.720 34.615 0.00 0.00 0.00 2.69
2592 5767 7.730364 ACCGAGTGATCCAATATATGTTTTC 57.270 36.000 0.00 0.00 0.00 2.29
2593 5768 8.519799 AAACCGAGTGATCCAATATATGTTTT 57.480 30.769 0.00 0.00 0.00 2.43
2594 5769 8.405531 CAAAACCGAGTGATCCAATATATGTTT 58.594 33.333 0.00 0.00 0.00 2.83
2595 5770 7.468631 GCAAAACCGAGTGATCCAATATATGTT 60.469 37.037 0.00 0.00 0.00 2.71
2596 5771 6.017109 GCAAAACCGAGTGATCCAATATATGT 60.017 38.462 0.00 0.00 0.00 2.29
2597 5772 6.205464 AGCAAAACCGAGTGATCCAATATATG 59.795 38.462 0.00 0.00 0.00 1.78
2598 5773 6.205464 CAGCAAAACCGAGTGATCCAATATAT 59.795 38.462 0.00 0.00 0.00 0.86
2599 5774 5.527214 CAGCAAAACCGAGTGATCCAATATA 59.473 40.000 0.00 0.00 0.00 0.86
2600 5775 4.336433 CAGCAAAACCGAGTGATCCAATAT 59.664 41.667 0.00 0.00 0.00 1.28
2601 5776 3.689161 CAGCAAAACCGAGTGATCCAATA 59.311 43.478 0.00 0.00 0.00 1.90
2602 5777 2.489329 CAGCAAAACCGAGTGATCCAAT 59.511 45.455 0.00 0.00 0.00 3.16
2603 5778 1.879380 CAGCAAAACCGAGTGATCCAA 59.121 47.619 0.00 0.00 0.00 3.53
2604 5779 1.522668 CAGCAAAACCGAGTGATCCA 58.477 50.000 0.00 0.00 0.00 3.41
2605 5780 0.804989 CCAGCAAAACCGAGTGATCC 59.195 55.000 0.00 0.00 0.00 3.36
2606 5781 0.169009 GCCAGCAAAACCGAGTGATC 59.831 55.000 0.00 0.00 0.00 2.92
2607 5782 1.577328 CGCCAGCAAAACCGAGTGAT 61.577 55.000 0.00 0.00 0.00 3.06
2608 5783 2.250939 CGCCAGCAAAACCGAGTGA 61.251 57.895 0.00 0.00 0.00 3.41
2609 5784 2.252260 CGCCAGCAAAACCGAGTG 59.748 61.111 0.00 0.00 0.00 3.51
2610 5785 2.203153 ACGCCAGCAAAACCGAGT 60.203 55.556 0.00 0.00 0.00 4.18
2611 5786 1.781025 TTGACGCCAGCAAAACCGAG 61.781 55.000 0.00 0.00 0.00 4.63
2612 5787 1.169661 ATTGACGCCAGCAAAACCGA 61.170 50.000 0.00 0.00 0.00 4.69
2613 5788 0.729140 GATTGACGCCAGCAAAACCG 60.729 55.000 0.00 0.00 0.00 4.44
2614 5789 0.598065 AGATTGACGCCAGCAAAACC 59.402 50.000 0.00 0.00 0.00 3.27
2615 5790 2.422276 AAGATTGACGCCAGCAAAAC 57.578 45.000 0.00 0.00 0.00 2.43
2616 5791 3.451141 AAAAGATTGACGCCAGCAAAA 57.549 38.095 0.00 0.00 0.00 2.44
2617 5792 3.451141 AAAAAGATTGACGCCAGCAAA 57.549 38.095 0.00 0.00 0.00 3.68
2618 5793 4.782019 ATAAAAAGATTGACGCCAGCAA 57.218 36.364 0.00 0.00 0.00 3.91
2619 5794 4.782019 AATAAAAAGATTGACGCCAGCA 57.218 36.364 0.00 0.00 0.00 4.41
2620 5795 6.237569 GCTAAAATAAAAAGATTGACGCCAGC 60.238 38.462 0.00 0.00 0.00 4.85
2621 5796 6.806249 TGCTAAAATAAAAAGATTGACGCCAG 59.194 34.615 0.00 0.00 0.00 4.85
2622 5797 6.682746 TGCTAAAATAAAAAGATTGACGCCA 58.317 32.000 0.00 0.00 0.00 5.69
2623 5798 7.411480 GGTTGCTAAAATAAAAAGATTGACGCC 60.411 37.037 0.00 0.00 0.00 5.68
2624 5799 7.115663 TGGTTGCTAAAATAAAAAGATTGACGC 59.884 33.333 0.00 0.00 0.00 5.19
2625 5800 8.514136 TGGTTGCTAAAATAAAAAGATTGACG 57.486 30.769 0.00 0.00 0.00 4.35
2626 5801 8.435430 GCTGGTTGCTAAAATAAAAAGATTGAC 58.565 33.333 0.00 0.00 38.95 3.18
2627 5802 7.328249 CGCTGGTTGCTAAAATAAAAAGATTGA 59.672 33.333 0.00 0.00 40.11 2.57
2628 5803 7.411804 CCGCTGGTTGCTAAAATAAAAAGATTG 60.412 37.037 0.00 0.00 40.11 2.67
2629 5804 6.589907 CCGCTGGTTGCTAAAATAAAAAGATT 59.410 34.615 0.00 0.00 40.11 2.40
2630 5805 6.099341 CCGCTGGTTGCTAAAATAAAAAGAT 58.901 36.000 0.00 0.00 40.11 2.40
2631 5806 5.465935 CCGCTGGTTGCTAAAATAAAAAGA 58.534 37.500 0.00 0.00 40.11 2.52
2632 5807 4.625311 CCCGCTGGTTGCTAAAATAAAAAG 59.375 41.667 0.00 0.00 40.11 2.27
2633 5808 4.281182 TCCCGCTGGTTGCTAAAATAAAAA 59.719 37.500 0.00 0.00 40.11 1.94
2634 5809 3.827302 TCCCGCTGGTTGCTAAAATAAAA 59.173 39.130 0.00 0.00 40.11 1.52
2635 5810 3.422796 TCCCGCTGGTTGCTAAAATAAA 58.577 40.909 0.00 0.00 40.11 1.40
2636 5811 3.013921 CTCCCGCTGGTTGCTAAAATAA 58.986 45.455 0.00 0.00 40.11 1.40
2637 5812 2.639065 CTCCCGCTGGTTGCTAAAATA 58.361 47.619 0.00 0.00 40.11 1.40
2638 5813 1.463674 CTCCCGCTGGTTGCTAAAAT 58.536 50.000 0.00 0.00 40.11 1.82
2639 5814 1.241315 GCTCCCGCTGGTTGCTAAAA 61.241 55.000 7.41 0.00 40.11 1.52
2640 5815 1.674322 GCTCCCGCTGGTTGCTAAA 60.674 57.895 7.41 0.00 40.11 1.85
2641 5816 2.046314 GCTCCCGCTGGTTGCTAA 60.046 61.111 7.41 0.00 40.11 3.09
2642 5817 4.096003 GGCTCCCGCTGGTTGCTA 62.096 66.667 12.47 0.00 40.11 3.49
2645 5820 3.058160 CAAGGCTCCCGCTGGTTG 61.058 66.667 0.00 0.00 36.09 3.77
2646 5821 3.553095 GACAAGGCTCCCGCTGGTT 62.553 63.158 0.00 0.00 36.09 3.67
2647 5822 4.021925 GACAAGGCTCCCGCTGGT 62.022 66.667 0.00 0.00 36.09 4.00
2648 5823 2.754664 AAAGACAAGGCTCCCGCTGG 62.755 60.000 0.00 0.00 36.09 4.85
2649 5824 0.890996 AAAAGACAAGGCTCCCGCTG 60.891 55.000 0.00 0.00 36.09 5.18
2650 5825 0.606673 GAAAAGACAAGGCTCCCGCT 60.607 55.000 0.00 0.00 36.09 5.52
2651 5826 0.889186 TGAAAAGACAAGGCTCCCGC 60.889 55.000 0.00 0.00 0.00 6.13
2652 5827 1.826385 ATGAAAAGACAAGGCTCCCG 58.174 50.000 0.00 0.00 0.00 5.14
2653 5828 3.696548 CCTAATGAAAAGACAAGGCTCCC 59.303 47.826 0.00 0.00 0.00 4.30
2654 5829 3.696548 CCCTAATGAAAAGACAAGGCTCC 59.303 47.826 0.00 0.00 0.00 4.70
2655 5830 3.129462 GCCCTAATGAAAAGACAAGGCTC 59.871 47.826 0.00 0.00 35.00 4.70
2656 5831 3.092301 GCCCTAATGAAAAGACAAGGCT 58.908 45.455 0.00 0.00 35.00 4.58
2657 5832 2.825532 TGCCCTAATGAAAAGACAAGGC 59.174 45.455 0.00 0.00 38.37 4.35
2658 5833 4.082125 ACTGCCCTAATGAAAAGACAAGG 58.918 43.478 0.00 0.00 0.00 3.61
2659 5834 4.616835 GCACTGCCCTAATGAAAAGACAAG 60.617 45.833 0.00 0.00 0.00 3.16
2660 5835 3.255642 GCACTGCCCTAATGAAAAGACAA 59.744 43.478 0.00 0.00 0.00 3.18
2661 5836 2.819608 GCACTGCCCTAATGAAAAGACA 59.180 45.455 0.00 0.00 0.00 3.41
2662 5837 2.164422 GGCACTGCCCTAATGAAAAGAC 59.836 50.000 9.13 0.00 44.06 3.01
2663 5838 2.446435 GGCACTGCCCTAATGAAAAGA 58.554 47.619 9.13 0.00 44.06 2.52
2664 5839 2.947448 GGCACTGCCCTAATGAAAAG 57.053 50.000 9.13 0.00 44.06 2.27
2698 5873 3.612247 CTGACGGTTGGGAGGCAGG 62.612 68.421 0.00 0.00 0.00 4.85
2717 5892 1.068753 CGATGCAGGAAGGCTCGAT 59.931 57.895 0.00 0.00 36.92 3.59
2725 5900 2.457598 AGGTAGAAGACGATGCAGGAA 58.542 47.619 0.00 0.00 0.00 3.36
2735 5910 3.065095 AGACGACGCATAAGGTAGAAGAC 59.935 47.826 0.00 0.00 0.00 3.01
2738 5913 4.445452 AAAGACGACGCATAAGGTAGAA 57.555 40.909 0.00 0.00 0.00 2.10
2747 5922 0.736325 CGAGGGAAAAGACGACGCAT 60.736 55.000 0.00 0.00 0.00 4.73
2748 5923 1.372499 CGAGGGAAAAGACGACGCA 60.372 57.895 0.00 0.00 0.00 5.24
2753 5928 3.062234 GCTTGTTATCGAGGGAAAAGACG 59.938 47.826 0.00 0.00 0.00 4.18
2776 5951 0.107508 CTGTGGCTCATCCCAATCGT 60.108 55.000 0.00 0.00 36.46 3.73
2781 5956 1.001764 CTTGCTGTGGCTCATCCCA 60.002 57.895 0.00 0.00 39.59 4.37
2783 5958 2.758089 CGCTTGCTGTGGCTCATCC 61.758 63.158 0.00 0.00 39.59 3.51
2786 5961 2.666190 GACGCTTGCTGTGGCTCA 60.666 61.111 0.00 0.00 39.59 4.26
2832 6007 3.885521 GGACGACGGCGGGTAGAG 61.886 72.222 18.49 0.00 43.17 2.43
2853 6028 3.572539 GCGAATGGCGAATGGCGA 61.573 61.111 0.00 0.00 44.92 5.54
2854 6029 4.612536 GGCGAATGGCGAATGGCG 62.613 66.667 0.00 0.00 44.92 5.69
2877 6052 1.743995 GCAATGGCGACGGTTAGGT 60.744 57.895 0.00 0.00 0.00 3.08
2891 6066 4.891727 CTACCGGCGAGCGGCAAT 62.892 66.667 9.30 6.02 46.16 3.56
2903 6078 2.412112 GCACCTACGCTCCTACCG 59.588 66.667 0.00 0.00 0.00 4.02
2931 6106 3.386932 TTTTGCTGCATAAGAGGGGAT 57.613 42.857 1.84 0.00 0.00 3.85
2932 6107 2.897271 TTTTGCTGCATAAGAGGGGA 57.103 45.000 1.84 0.00 0.00 4.81
2983 6159 2.126580 GACGAACTCCACGGACCG 60.127 66.667 13.61 13.61 34.93 4.79
2986 6162 4.047059 GGCGACGAACTCCACGGA 62.047 66.667 0.00 0.00 34.93 4.69
3056 6232 3.578688 GACAAAAAGCTTGAATCGGCAT 58.421 40.909 0.00 0.00 0.00 4.40
3078 6254 3.435186 GCTTCAACCAGAGGCCGC 61.435 66.667 0.00 0.00 43.06 6.53
3082 6258 5.532779 ACTTCTTAAAAGCTTCAACCAGAGG 59.467 40.000 0.00 0.92 0.00 3.69
3107 6283 9.388506 TGAAAAGCTTCAACCATAAATTGAAAA 57.611 25.926 0.00 0.00 43.57 2.29
3108 6284 8.954950 TGAAAAGCTTCAACCATAAATTGAAA 57.045 26.923 0.00 0.00 43.57 2.69
3109 6285 8.954950 TTGAAAAGCTTCAACCATAAATTGAA 57.045 26.923 0.00 0.68 44.76 2.69
3299 8091 2.047274 CACCGTCGTTGCTCCCAT 60.047 61.111 0.00 0.00 0.00 4.00
3345 8137 3.837213 ATCACTGGTTTCAGCAAATCG 57.163 42.857 0.00 0.00 44.59 3.34
3355 8147 8.584157 TGATGTAGCAATTTTAATCACTGGTTT 58.416 29.630 0.00 0.00 0.00 3.27
3381 8173 4.101448 GCGCCCCCACTCATCACT 62.101 66.667 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.