Multiple sequence alignment - TraesCS7B01G375600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G375600 chr7B 100.000 3305 0 0 1 3305 640913875 640917179 0.000000e+00 6104.0
1 TraesCS7B01G375600 chr7B 85.677 384 31 13 2328 2708 640942823 640943185 1.860000e-102 383.0
2 TraesCS7B01G375600 chr7B 86.550 342 31 11 2509 2846 640921454 640921124 2.420000e-96 363.0
3 TraesCS7B01G375600 chr7B 87.719 114 12 2 1836 1947 640942712 640942825 7.440000e-27 132.0
4 TraesCS7B01G375600 chr7B 96.774 31 1 0 3004 3034 467063074 467063044 6.000000e-03 52.8
5 TraesCS7B01G375600 chr7D 94.101 2509 123 11 1 2506 577593826 577596312 0.000000e+00 3790.0
6 TraesCS7B01G375600 chr7A 92.442 1257 65 13 1 1236 669726799 669728046 0.000000e+00 1768.0
7 TraesCS7B01G375600 chr7A 92.925 1046 39 19 1458 2473 669728118 669729158 0.000000e+00 1489.0
8 TraesCS7B01G375600 chr7A 83.755 474 50 15 2386 2856 669729654 669730103 1.100000e-114 424.0
9 TraesCS7B01G375600 chr7A 88.372 86 10 0 3051 3136 669730292 669730377 1.620000e-18 104.0
10 TraesCS7B01G375600 chr1A 84.756 164 23 2 1065 1227 60537387 60537549 2.640000e-36 163.0
11 TraesCS7B01G375600 chr1D 84.146 164 24 2 1065 1227 62564049 62564211 1.230000e-34 158.0
12 TraesCS7B01G375600 chr1D 92.308 52 4 0 1174 1225 62858090 62858141 1.270000e-09 75.0
13 TraesCS7B01G375600 chr1B 83.537 164 25 2 1065 1227 99709863 99710025 5.710000e-33 152.0
14 TraesCS7B01G375600 chr1B 92.308 52 4 0 1174 1225 100308703 100308754 1.270000e-09 75.0
15 TraesCS7B01G375600 chr4D 77.160 162 28 8 1073 1229 498949223 498949380 5.880000e-13 86.1
16 TraesCS7B01G375600 chr5A 77.070 157 27 8 1076 1227 679738676 679738828 7.600000e-12 82.4
17 TraesCS7B01G375600 chr5D 96.774 31 1 0 3004 3034 8179617 8179587 6.000000e-03 52.8
18 TraesCS7B01G375600 chr5D 100.000 28 0 0 3004 3031 8385129 8385156 6.000000e-03 52.8
19 TraesCS7B01G375600 chr3B 100.000 28 0 0 3002 3029 15181104 15181077 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G375600 chr7B 640913875 640917179 3304 False 6104.00 6104 100.0000 1 3305 1 chr7B.!!$F1 3304
1 TraesCS7B01G375600 chr7D 577593826 577596312 2486 False 3790.00 3790 94.1010 1 2506 1 chr7D.!!$F1 2505
2 TraesCS7B01G375600 chr7A 669726799 669730377 3578 False 946.25 1768 89.3735 1 3136 4 chr7A.!!$F1 3135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.318022 CGTGTGCATGCATGTGTGTT 60.318 50.0 25.64 0.00 0.00 3.32 F
1265 1321 0.462759 TGTGGTCAACATGCGTGTCA 60.463 50.0 12.96 2.82 37.67 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1870 0.317479 CCTCCACGTCGAAGTCCTTT 59.683 55.0 0.00 0.0 0.00 3.11 R
2395 2483 0.033405 TTGGACCGGGAAAACCACAA 60.033 50.0 6.32 0.0 40.22 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 0.809636 TCATATGCACGGCGAGGTTG 60.810 55.000 16.62 1.42 0.00 3.77
95 96 1.890510 GGCGAGGTTGGTTGAACGT 60.891 57.895 0.00 0.00 35.12 3.99
200 201 2.872463 CGCGTGTGCATGCATGTG 60.872 61.111 25.64 18.64 43.26 3.21
201 202 2.256158 GCGTGTGCATGCATGTGT 59.744 55.556 25.64 0.00 42.66 3.72
202 203 2.084101 GCGTGTGCATGCATGTGTG 61.084 57.895 25.64 13.18 42.66 3.82
203 204 1.283487 CGTGTGCATGCATGTGTGT 59.717 52.632 25.64 0.00 0.00 3.72
204 205 0.318022 CGTGTGCATGCATGTGTGTT 60.318 50.000 25.64 0.00 0.00 3.32
205 206 1.411394 GTGTGCATGCATGTGTGTTC 58.589 50.000 25.64 8.75 0.00 3.18
206 207 1.001048 GTGTGCATGCATGTGTGTTCT 60.001 47.619 25.64 0.00 0.00 3.01
207 208 1.682323 TGTGCATGCATGTGTGTTCTT 59.318 42.857 25.64 0.00 0.00 2.52
208 209 2.101082 TGTGCATGCATGTGTGTTCTTT 59.899 40.909 25.64 0.00 0.00 2.52
209 210 2.473609 GTGCATGCATGTGTGTTCTTTG 59.526 45.455 25.64 0.00 0.00 2.77
210 211 2.101082 TGCATGCATGTGTGTTCTTTGT 59.899 40.909 26.79 0.00 0.00 2.83
211 212 3.125316 GCATGCATGTGTGTTCTTTGTT 58.875 40.909 26.79 0.00 0.00 2.83
212 213 4.202090 TGCATGCATGTGTGTTCTTTGTTA 60.202 37.500 26.79 0.00 0.00 2.41
254 262 1.531423 TCTCGCGAGTCAAAGTACCT 58.469 50.000 33.33 0.00 0.00 3.08
368 376 2.248431 GCGACGTTGCAACACTCC 59.752 61.111 28.01 12.71 34.15 3.85
383 391 0.466124 ACTCCCTTGATAGCTTCCGC 59.534 55.000 0.00 0.00 0.00 5.54
395 403 1.834263 AGCTTCCGCTCTGGTTCTTAT 59.166 47.619 0.00 0.00 45.15 1.73
416 424 8.035394 TCTTATTAGTAGCCTTGTCTTGTTCAG 58.965 37.037 0.00 0.00 0.00 3.02
419 427 2.717639 AGCCTTGTCTTGTTCAGTGT 57.282 45.000 0.00 0.00 0.00 3.55
425 433 5.541845 CCTTGTCTTGTTCAGTGTCTGATA 58.458 41.667 0.24 0.00 40.39 2.15
426 434 6.169094 CCTTGTCTTGTTCAGTGTCTGATAT 58.831 40.000 0.24 0.00 40.39 1.63
427 435 7.323420 CCTTGTCTTGTTCAGTGTCTGATATA 58.677 38.462 0.24 0.00 40.39 0.86
428 436 7.984050 CCTTGTCTTGTTCAGTGTCTGATATAT 59.016 37.037 0.24 0.00 40.39 0.86
445 453 9.639601 TCTGATATATGATGAAATGTACCGTTC 57.360 33.333 0.00 0.00 0.00 3.95
447 455 9.771534 TGATATATGATGAAATGTACCGTTCAA 57.228 29.630 11.16 0.00 37.31 2.69
455 463 6.310960 TGAAATGTACCGTTCAAATCAATCG 58.689 36.000 5.98 0.00 30.93 3.34
467 475 8.432359 CGTTCAAATCAATCGATAATATCCGAA 58.568 33.333 0.00 0.00 38.36 4.30
472 480 5.962433 TCAATCGATAATATCCGAAGGGTC 58.038 41.667 0.00 0.00 28.78 4.46
525 533 3.786635 CATACAGAAGGGAAGGTTCGAG 58.213 50.000 0.00 0.00 0.00 4.04
526 534 2.011122 ACAGAAGGGAAGGTTCGAGA 57.989 50.000 0.00 0.00 0.00 4.04
530 538 1.893801 GAAGGGAAGGTTCGAGACAGA 59.106 52.381 0.00 0.00 0.00 3.41
536 544 4.116238 GGAAGGTTCGAGACAGATCATTC 58.884 47.826 0.00 0.00 32.85 2.67
619 633 1.226746 GGTGTTCTGGTGTGTAGTGC 58.773 55.000 0.00 0.00 0.00 4.40
679 693 1.202651 GCAATACCCCGTGCAGATAGT 60.203 52.381 0.00 0.00 40.58 2.12
786 802 3.114606 TCCTGTTGGGCTCTCATTATCA 58.885 45.455 0.00 0.00 34.39 2.15
836 852 5.107453 GCATATGAACCGTTCCTTCGAATAG 60.107 44.000 6.97 0.00 0.00 1.73
870 890 1.153353 AACCACGCATCAACCGTTAG 58.847 50.000 0.00 0.00 36.69 2.34
884 904 3.582780 ACCGTTAGAAAACTAGCCGAAG 58.417 45.455 0.00 0.00 33.15 3.79
941 961 2.616256 GCACCACATCATCTCACCAAGA 60.616 50.000 0.00 0.00 38.72 3.02
1140 1168 1.374252 GAACGTCGTCCAGTGGCAT 60.374 57.895 3.51 0.00 0.00 4.40
1265 1321 0.462759 TGTGGTCAACATGCGTGTCA 60.463 50.000 12.96 2.82 37.67 3.58
1282 1338 3.863638 GTCAATAAAATTGACGCGTGC 57.136 42.857 20.70 9.34 39.29 5.34
1315 1371 0.527385 TTTGCAAGCACGCCAAGTTC 60.527 50.000 0.00 0.00 0.00 3.01
1316 1372 2.427410 GCAAGCACGCCAAGTTCG 60.427 61.111 0.00 0.00 0.00 3.95
1352 1408 2.799562 CGAGACGGATTAGCAATGCTCA 60.800 50.000 12.53 0.00 40.44 4.26
1359 1415 3.181493 GGATTAGCAATGCTCACCAACTG 60.181 47.826 12.53 0.00 40.44 3.16
1376 1432 2.960819 ACTGAACTTGTCATACTCGGC 58.039 47.619 0.00 0.00 35.07 5.54
1380 1436 1.992170 ACTTGTCATACTCGGCGAAC 58.008 50.000 12.13 6.37 0.00 3.95
1394 1450 2.620242 GGCGAACAAAAATGCCATGAT 58.380 42.857 0.00 0.00 46.76 2.45
1416 1472 7.613585 TGATAAATGTTCATTTTGCCATGACT 58.386 30.769 14.54 0.00 32.68 3.41
1420 1476 8.674263 AAATGTTCATTTTGCCATGACTAAAA 57.326 26.923 5.12 0.00 32.68 1.52
1423 1479 9.941325 ATGTTCATTTTGCCATGACTAAAAATA 57.059 25.926 0.00 0.00 32.68 1.40
1437 1493 7.156000 TGACTAAAAATATGACGTTCACTGGA 58.844 34.615 0.00 0.00 0.00 3.86
1454 1510 7.303182 TCACTGGATAGTTAGGTCCATATTG 57.697 40.000 0.00 0.00 43.20 1.90
1500 1558 2.825836 CAGGGTTGCGATGCCTCC 60.826 66.667 0.00 0.00 0.00 4.30
1662 1720 3.269347 CTCATTTACGCGGCCCGG 61.269 66.667 12.47 0.00 42.52 5.73
1710 1768 1.153628 CATCCACTTCGACGTCCCC 60.154 63.158 10.58 0.00 0.00 4.81
1998 2056 2.542896 GTCAACAACGTCCGCGAC 59.457 61.111 8.23 2.72 42.00 5.19
2016 2074 0.739112 ACGAGGACTACGAGACGGTC 60.739 60.000 0.00 0.00 34.70 4.79
2313 2401 3.762823 ACCCTCTCTACTAAACAAGTCGG 59.237 47.826 0.00 0.00 39.80 4.79
2345 2433 2.762535 ACAAGGTCGATCCAACGAAT 57.237 45.000 0.00 0.00 43.75 3.34
2346 2434 3.053831 ACAAGGTCGATCCAACGAATT 57.946 42.857 0.00 0.00 43.75 2.17
2347 2435 2.742053 ACAAGGTCGATCCAACGAATTG 59.258 45.455 0.00 0.00 43.75 2.32
2348 2436 3.000041 CAAGGTCGATCCAACGAATTGA 59.000 45.455 0.00 0.00 43.75 2.57
2364 2452 1.703411 TTGAAGAACCTTTGCCCCTG 58.297 50.000 0.00 0.00 0.00 4.45
2365 2453 0.178964 TGAAGAACCTTTGCCCCTGG 60.179 55.000 0.00 0.00 0.00 4.45
2388 2476 1.419922 CGGTGTGCGGATTTCTTCG 59.580 57.895 0.00 0.00 0.00 3.79
2395 2483 4.508124 GTGTGCGGATTTCTTCGATAATCT 59.492 41.667 12.36 0.00 32.60 2.40
2405 2493 9.278734 GATTTCTTCGATAATCTTGTGGTTTTC 57.721 33.333 7.70 0.00 0.00 2.29
2407 2495 5.646360 TCTTCGATAATCTTGTGGTTTTCCC 59.354 40.000 0.00 0.00 39.73 3.97
2451 2540 8.256605 TGATTCCCATTGGTTGTGTATTTTATG 58.743 33.333 1.20 0.00 0.00 1.90
2487 3150 5.947228 ATGTATCATCCACGGCAATAAAG 57.053 39.130 0.00 0.00 0.00 1.85
2491 3154 5.751243 ATCATCCACGGCAATAAAGTTAC 57.249 39.130 0.00 0.00 0.00 2.50
2496 3159 2.094734 CACGGCAATAAAGTTACGGTCC 59.905 50.000 0.00 0.00 0.00 4.46
2504 3167 2.579410 AAGTTACGGTCCTGGCAAAT 57.421 45.000 0.00 0.00 0.00 2.32
2506 3169 0.808755 GTTACGGTCCTGGCAAATGG 59.191 55.000 0.00 0.00 0.00 3.16
2525 3188 7.909641 GCAAATGGCAATTTATTACAAATGACC 59.090 33.333 0.00 0.00 43.97 4.02
2540 3203 9.883142 TTACAAATGACCTTTCAAGAAAATTGT 57.117 25.926 0.00 0.00 34.61 2.71
2578 3241 9.314321 GGATTATATAGATATCAACGTGGTTGG 57.686 37.037 5.32 0.00 42.99 3.77
2579 3242 9.871238 GATTATATAGATATCAACGTGGTTGGT 57.129 33.333 5.32 4.19 42.99 3.67
2589 3252 1.213094 CGTGGTTGGTGAGTCGTGAC 61.213 60.000 0.00 0.00 0.00 3.67
2620 3283 4.430908 CATAAAGGGTAGACCGTGAACTC 58.569 47.826 0.00 0.00 46.96 3.01
2651 3314 2.897350 GCGAGCATGCACCTACCC 60.897 66.667 21.98 0.00 34.15 3.69
2673 3336 4.344102 CCGAGAAATCCTACCAACCAGATA 59.656 45.833 0.00 0.00 0.00 1.98
2685 3348 3.798794 CCAGATAATGGCCGGTTCA 57.201 52.632 1.90 2.14 43.83 3.18
2689 3352 3.243501 CCAGATAATGGCCGGTTCATTTG 60.244 47.826 23.24 17.20 43.83 2.32
2718 3381 6.939132 ATCAAAGCTGATACTCCAATCAAG 57.061 37.500 0.00 0.00 40.67 3.02
2721 3384 6.716628 TCAAAGCTGATACTCCAATCAAGTTT 59.283 34.615 0.00 0.00 35.51 2.66
2743 3408 0.584396 TTTTTGTGGCGACTACAGCG 59.416 50.000 0.00 0.00 35.00 5.18
2749 3414 0.450583 TGGCGACTACAGCGAAGTAG 59.549 55.000 11.67 11.67 45.44 2.57
2791 3456 3.496331 ACCCGGAAGAAAACATGTGAAT 58.504 40.909 0.73 0.00 0.00 2.57
2794 3459 5.048294 ACCCGGAAGAAAACATGTGAATAAC 60.048 40.000 0.73 0.00 0.00 1.89
2796 3461 5.086058 CGGAAGAAAACATGTGAATAACCG 58.914 41.667 0.00 8.15 0.00 4.44
2846 3511 2.547218 GGACCAGTTGAAACGAGCTACA 60.547 50.000 0.00 0.00 0.00 2.74
2856 3521 1.486211 ACGAGCTACAGTATTGGGCT 58.514 50.000 7.47 7.47 39.17 5.19
2857 3522 1.409427 ACGAGCTACAGTATTGGGCTC 59.591 52.381 18.47 18.47 43.90 4.70
2858 3523 1.683917 CGAGCTACAGTATTGGGCTCT 59.316 52.381 22.56 3.67 44.51 4.09
2859 3524 2.101582 CGAGCTACAGTATTGGGCTCTT 59.898 50.000 22.56 1.64 44.51 2.85
2860 3525 3.723260 GAGCTACAGTATTGGGCTCTTC 58.277 50.000 20.03 4.04 43.94 2.87
2861 3526 2.436173 AGCTACAGTATTGGGCTCTTCC 59.564 50.000 0.00 0.00 34.14 3.46
2872 3537 2.049888 GGCTCTTCCCATTTCCTGAG 57.950 55.000 0.00 0.00 0.00 3.35
2873 3538 1.387539 GCTCTTCCCATTTCCTGAGC 58.612 55.000 0.00 0.00 39.74 4.26
2874 3539 1.661341 CTCTTCCCATTTCCTGAGCG 58.339 55.000 0.00 0.00 0.00 5.03
2875 3540 0.253044 TCTTCCCATTTCCTGAGCGG 59.747 55.000 0.00 0.00 0.00 5.52
2895 3560 2.483889 GGCGGAGGTGAGATTTCCTTAG 60.484 54.545 0.00 0.00 33.83 2.18
2906 3571 7.147637 GGTGAGATTTCCTTAGGAATCAGTACT 60.148 40.741 15.09 7.90 41.71 2.73
2908 3573 9.488762 TGAGATTTCCTTAGGAATCAGTACTTA 57.511 33.333 15.09 0.00 41.71 2.24
2912 3577 9.853177 ATTTCCTTAGGAATCAGTACTTATTGG 57.147 33.333 15.09 2.54 41.71 3.16
2914 3579 8.019656 TCCTTAGGAATCAGTACTTATTGGAC 57.980 38.462 7.02 0.00 0.00 4.02
2915 3580 7.844779 TCCTTAGGAATCAGTACTTATTGGACT 59.155 37.037 7.02 5.54 0.00 3.85
2916 3581 9.144298 CCTTAGGAATCAGTACTTATTGGACTA 57.856 37.037 7.02 4.72 0.00 2.59
2918 3583 9.710818 TTAGGAATCAGTACTTATTGGACTAGT 57.289 33.333 7.02 0.00 0.00 2.57
2919 3584 8.611051 AGGAATCAGTACTTATTGGACTAGTT 57.389 34.615 7.02 0.00 0.00 2.24
2921 3586 7.711339 GGAATCAGTACTTATTGGACTAGTTGG 59.289 40.741 7.02 0.00 0.00 3.77
2924 3589 8.654485 TCAGTACTTATTGGACTAGTTGGTAA 57.346 34.615 0.00 0.00 0.00 2.85
2925 3590 9.092338 TCAGTACTTATTGGACTAGTTGGTAAA 57.908 33.333 0.00 0.00 0.00 2.01
2926 3591 9.148104 CAGTACTTATTGGACTAGTTGGTAAAC 57.852 37.037 0.00 0.00 36.47 2.01
2927 3592 8.031277 AGTACTTATTGGACTAGTTGGTAAACG 58.969 37.037 0.00 0.00 41.45 3.60
2928 3593 6.762333 ACTTATTGGACTAGTTGGTAAACGT 58.238 36.000 0.00 0.00 41.45 3.99
2929 3594 6.647895 ACTTATTGGACTAGTTGGTAAACGTG 59.352 38.462 0.00 0.00 41.45 4.49
2930 3595 3.389925 TGGACTAGTTGGTAAACGTGG 57.610 47.619 0.00 0.00 41.45 4.94
2931 3596 2.071540 GGACTAGTTGGTAAACGTGGC 58.928 52.381 0.00 0.00 41.45 5.01
2933 3598 2.477754 GACTAGTTGGTAAACGTGGCAC 59.522 50.000 7.79 7.79 41.45 5.01
2936 3601 0.233848 GTTGGTAAACGTGGCACGAG 59.766 55.000 42.65 18.65 46.05 4.18
2937 3602 1.500512 TTGGTAAACGTGGCACGAGC 61.501 55.000 42.65 29.73 46.05 5.03
2938 3603 1.957186 GGTAAACGTGGCACGAGCA 60.957 57.895 42.65 24.28 46.05 4.26
2939 3604 1.500512 GGTAAACGTGGCACGAGCAA 61.501 55.000 42.65 22.86 46.05 3.91
2940 3605 0.515564 GTAAACGTGGCACGAGCAAT 59.484 50.000 42.65 24.70 46.05 3.56
2941 3606 0.793861 TAAACGTGGCACGAGCAATC 59.206 50.000 42.65 1.70 46.05 2.67
2942 3607 1.163420 AAACGTGGCACGAGCAATCA 61.163 50.000 42.65 0.00 46.05 2.57
2943 3608 1.568612 AACGTGGCACGAGCAATCAG 61.569 55.000 42.65 14.09 46.05 2.90
2944 3609 2.029288 CGTGGCACGAGCAATCAGT 61.029 57.895 34.85 0.00 46.05 3.41
2945 3610 1.568612 CGTGGCACGAGCAATCAGTT 61.569 55.000 34.85 0.00 46.05 3.16
2948 3613 1.001487 TGGCACGAGCAATCAGTTTTG 60.001 47.619 7.26 0.00 44.61 2.44
2960 3625 5.481105 CAATCAGTTTTGCACATATTGGGT 58.519 37.500 0.00 0.00 31.05 4.51
2962 3627 4.148079 TCAGTTTTGCACATATTGGGTGA 58.852 39.130 0.00 0.00 38.54 4.02
2963 3628 4.586421 TCAGTTTTGCACATATTGGGTGAA 59.414 37.500 0.00 0.00 38.54 3.18
2964 3629 5.069648 TCAGTTTTGCACATATTGGGTGAAA 59.930 36.000 0.00 0.00 38.54 2.69
2966 3631 6.259608 CAGTTTTGCACATATTGGGTGAAAAA 59.740 34.615 7.21 7.21 46.39 1.94
3008 3673 4.392921 TTTTTGCGGGAACTCAAAATCA 57.607 36.364 0.00 0.00 39.13 2.57
3010 3675 2.270352 TGCGGGAACTCAAAATCACT 57.730 45.000 0.00 0.00 0.00 3.41
3012 3677 3.334691 TGCGGGAACTCAAAATCACTAG 58.665 45.455 0.00 0.00 0.00 2.57
3013 3678 3.244422 TGCGGGAACTCAAAATCACTAGT 60.244 43.478 0.00 0.00 0.00 2.57
3014 3679 3.751698 GCGGGAACTCAAAATCACTAGTT 59.248 43.478 0.00 0.00 34.96 2.24
3017 3682 6.402226 GCGGGAACTCAAAATCACTAGTTAAG 60.402 42.308 0.00 0.00 32.51 1.85
3018 3683 6.092259 CGGGAACTCAAAATCACTAGTTAAGG 59.908 42.308 0.00 0.00 32.51 2.69
3019 3684 6.374613 GGGAACTCAAAATCACTAGTTAAGGG 59.625 42.308 0.00 0.00 32.51 3.95
3021 3686 7.447545 GGAACTCAAAATCACTAGTTAAGGGTT 59.552 37.037 0.00 0.00 32.51 4.11
3022 3687 9.498176 GAACTCAAAATCACTAGTTAAGGGTTA 57.502 33.333 0.00 0.00 32.51 2.85
3023 3688 8.843885 ACTCAAAATCACTAGTTAAGGGTTAC 57.156 34.615 0.00 0.00 0.00 2.50
3039 3704 5.932619 GGGTTACCCTTTGCTAATTTCAT 57.067 39.130 14.22 0.00 41.34 2.57
3040 3705 6.294361 GGGTTACCCTTTGCTAATTTCATT 57.706 37.500 14.22 0.00 41.34 2.57
3041 3706 6.338146 GGGTTACCCTTTGCTAATTTCATTC 58.662 40.000 14.22 0.00 41.34 2.67
3042 3707 6.033966 GGTTACCCTTTGCTAATTTCATTCG 58.966 40.000 0.00 0.00 0.00 3.34
3043 3708 4.718940 ACCCTTTGCTAATTTCATTCGG 57.281 40.909 0.00 0.00 0.00 4.30
3045 3710 4.770010 ACCCTTTGCTAATTTCATTCGGAA 59.230 37.500 0.00 0.00 0.00 4.30
3059 3733 3.859411 TTCGGAAAACCATATGCCAAC 57.141 42.857 0.00 0.00 0.00 3.77
3060 3734 3.080300 TCGGAAAACCATATGCCAACT 57.920 42.857 0.00 0.00 0.00 3.16
3075 3749 3.808728 GCCAACTGCATATCTACCTTCA 58.191 45.455 0.00 0.00 40.77 3.02
3077 3751 4.130118 CCAACTGCATATCTACCTTCACC 58.870 47.826 0.00 0.00 0.00 4.02
3078 3752 4.384098 CCAACTGCATATCTACCTTCACCA 60.384 45.833 0.00 0.00 0.00 4.17
3084 3758 2.789409 ATCTACCTTCACCAAGCACC 57.211 50.000 0.00 0.00 0.00 5.01
3093 3767 1.447838 ACCAAGCACCGTAGATGCG 60.448 57.895 0.00 0.00 0.00 4.73
3136 3810 6.917217 TTTTCTGAAAATGCGTGGAAAAAT 57.083 29.167 11.33 0.00 32.29 1.82
3137 3811 6.523676 TTTCTGAAAATGCGTGGAAAAATC 57.476 33.333 0.00 0.00 0.00 2.17
3138 3812 5.193663 TCTGAAAATGCGTGGAAAAATCA 57.806 34.783 0.00 0.00 0.00 2.57
3139 3813 4.981674 TCTGAAAATGCGTGGAAAAATCAC 59.018 37.500 0.00 0.00 0.00 3.06
3140 3814 4.054671 TGAAAATGCGTGGAAAAATCACC 58.945 39.130 0.00 0.00 0.00 4.02
3141 3815 3.742433 AAATGCGTGGAAAAATCACCA 57.258 38.095 0.00 0.00 0.00 4.17
3145 3819 3.489813 GTGGAAAAATCACCACGGC 57.510 52.632 0.00 0.00 45.16 5.68
3146 3820 0.038618 GTGGAAAAATCACCACGGCC 60.039 55.000 0.00 0.00 45.16 6.13
3147 3821 0.468214 TGGAAAAATCACCACGGCCA 60.468 50.000 2.24 0.00 0.00 5.36
3148 3822 0.676736 GGAAAAATCACCACGGCCAA 59.323 50.000 2.24 0.00 0.00 4.52
3149 3823 1.604438 GGAAAAATCACCACGGCCAAC 60.604 52.381 2.24 0.00 0.00 3.77
3150 3824 1.339929 GAAAAATCACCACGGCCAACT 59.660 47.619 2.24 0.00 0.00 3.16
3151 3825 0.673437 AAAATCACCACGGCCAACTG 59.327 50.000 2.24 0.00 0.00 3.16
3152 3826 0.467290 AAATCACCACGGCCAACTGT 60.467 50.000 2.24 0.00 35.02 3.55
3153 3827 0.467290 AATCACCACGGCCAACTGTT 60.467 50.000 2.24 0.00 31.05 3.16
3154 3828 0.889186 ATCACCACGGCCAACTGTTC 60.889 55.000 2.24 0.00 31.05 3.18
3155 3829 1.525995 CACCACGGCCAACTGTTCT 60.526 57.895 2.24 0.00 31.05 3.01
3156 3830 0.250124 CACCACGGCCAACTGTTCTA 60.250 55.000 2.24 0.00 31.05 2.10
3157 3831 0.034896 ACCACGGCCAACTGTTCTAG 59.965 55.000 2.24 0.00 31.05 2.43
3158 3832 1.298859 CCACGGCCAACTGTTCTAGC 61.299 60.000 2.24 0.00 31.05 3.42
3159 3833 1.003718 ACGGCCAACTGTTCTAGCC 60.004 57.895 2.24 13.22 40.33 3.93
3160 3834 1.296715 CGGCCAACTGTTCTAGCCT 59.703 57.895 18.33 0.00 41.60 4.58
3161 3835 0.321653 CGGCCAACTGTTCTAGCCTT 60.322 55.000 18.33 0.00 41.60 4.35
3162 3836 1.454201 GGCCAACTGTTCTAGCCTTC 58.546 55.000 15.11 0.00 40.57 3.46
3163 3837 1.003696 GGCCAACTGTTCTAGCCTTCT 59.996 52.381 15.11 0.00 40.57 2.85
3164 3838 2.351455 GCCAACTGTTCTAGCCTTCTC 58.649 52.381 0.00 0.00 0.00 2.87
3165 3839 2.611518 CCAACTGTTCTAGCCTTCTCG 58.388 52.381 0.00 0.00 0.00 4.04
3166 3840 2.231478 CCAACTGTTCTAGCCTTCTCGA 59.769 50.000 0.00 0.00 0.00 4.04
3167 3841 3.506810 CAACTGTTCTAGCCTTCTCGAG 58.493 50.000 5.93 5.93 0.00 4.04
3177 3851 2.458162 CTTCTCGAGGAGTCGTCGT 58.542 57.895 28.49 0.00 46.85 4.34
3178 3852 0.095589 CTTCTCGAGGAGTCGTCGTG 59.904 60.000 28.49 26.14 46.85 4.35
3179 3853 1.296755 TTCTCGAGGAGTCGTCGTGG 61.297 60.000 28.49 22.47 46.85 4.94
3180 3854 3.384014 CTCGAGGAGTCGTCGTGGC 62.384 68.421 28.49 0.00 46.85 5.01
3181 3855 3.432588 CGAGGAGTCGTCGTGGCT 61.433 66.667 23.51 0.00 41.57 4.75
3182 3856 2.179517 GAGGAGTCGTCGTGGCTG 59.820 66.667 0.00 0.00 0.00 4.85
3183 3857 2.597805 AGGAGTCGTCGTGGCTGT 60.598 61.111 0.00 0.00 0.00 4.40
3184 3858 2.430921 GGAGTCGTCGTGGCTGTG 60.431 66.667 0.00 0.00 0.00 3.66
3185 3859 2.430921 GAGTCGTCGTGGCTGTGG 60.431 66.667 0.00 0.00 0.00 4.17
3186 3860 4.664677 AGTCGTCGTGGCTGTGGC 62.665 66.667 0.00 0.00 37.82 5.01
3196 3870 3.909662 GCTGTGGCCCACATGTAG 58.090 61.111 18.64 6.76 43.71 2.74
3197 3871 2.409870 GCTGTGGCCCACATGTAGC 61.410 63.158 18.64 13.61 43.71 3.58
3198 3872 1.002257 CTGTGGCCCACATGTAGCA 60.002 57.895 18.64 0.00 43.71 3.49
3199 3873 1.002257 TGTGGCCCACATGTAGCAG 60.002 57.895 13.83 0.00 39.62 4.24
3200 3874 1.002134 GTGGCCCACATGTAGCAGT 60.002 57.895 18.67 0.00 34.08 4.40
3201 3875 0.609131 GTGGCCCACATGTAGCAGTT 60.609 55.000 18.67 0.00 34.08 3.16
3202 3876 0.608856 TGGCCCACATGTAGCAGTTG 60.609 55.000 18.67 0.00 0.00 3.16
3203 3877 1.315257 GGCCCACATGTAGCAGTTGG 61.315 60.000 18.67 5.93 0.00 3.77
3204 3878 1.315257 GCCCACATGTAGCAGTTGGG 61.315 60.000 13.65 11.99 38.11 4.12
3205 3879 0.327924 CCCACATGTAGCAGTTGGGA 59.672 55.000 9.21 0.00 37.29 4.37
3206 3880 1.679944 CCCACATGTAGCAGTTGGGAG 60.680 57.143 9.21 0.00 37.29 4.30
3207 3881 1.679944 CCACATGTAGCAGTTGGGAGG 60.680 57.143 0.00 0.00 0.00 4.30
3208 3882 1.278985 CACATGTAGCAGTTGGGAGGA 59.721 52.381 0.00 0.00 0.00 3.71
3209 3883 2.092753 CACATGTAGCAGTTGGGAGGAT 60.093 50.000 0.00 0.00 0.00 3.24
3210 3884 3.134623 CACATGTAGCAGTTGGGAGGATA 59.865 47.826 0.00 0.00 0.00 2.59
3211 3885 3.389329 ACATGTAGCAGTTGGGAGGATAG 59.611 47.826 0.00 0.00 0.00 2.08
3212 3886 3.116096 TGTAGCAGTTGGGAGGATAGT 57.884 47.619 0.00 0.00 0.00 2.12
3213 3887 3.450904 TGTAGCAGTTGGGAGGATAGTT 58.549 45.455 0.00 0.00 0.00 2.24
3214 3888 3.197766 TGTAGCAGTTGGGAGGATAGTTG 59.802 47.826 0.00 0.00 0.00 3.16
3215 3889 1.065126 AGCAGTTGGGAGGATAGTTGC 60.065 52.381 0.00 0.00 0.00 4.17
3216 3890 1.340017 GCAGTTGGGAGGATAGTTGCA 60.340 52.381 0.00 0.00 0.00 4.08
3217 3891 2.684927 GCAGTTGGGAGGATAGTTGCAT 60.685 50.000 0.00 0.00 0.00 3.96
3218 3892 2.947652 CAGTTGGGAGGATAGTTGCATG 59.052 50.000 0.00 0.00 0.00 4.06
3219 3893 1.678101 GTTGGGAGGATAGTTGCATGC 59.322 52.381 11.82 11.82 0.00 4.06
3220 3894 0.918258 TGGGAGGATAGTTGCATGCA 59.082 50.000 18.46 18.46 0.00 3.96
3221 3895 1.496001 TGGGAGGATAGTTGCATGCAT 59.504 47.619 23.37 10.46 0.00 3.96
3222 3896 2.091720 TGGGAGGATAGTTGCATGCATT 60.092 45.455 23.37 15.45 0.00 3.56
3223 3897 2.961062 GGGAGGATAGTTGCATGCATTT 59.039 45.455 23.37 15.07 0.00 2.32
3224 3898 3.385755 GGGAGGATAGTTGCATGCATTTT 59.614 43.478 23.37 12.46 0.00 1.82
3225 3899 4.141869 GGGAGGATAGTTGCATGCATTTTT 60.142 41.667 23.37 9.89 0.00 1.94
3226 3900 5.045872 GGAGGATAGTTGCATGCATTTTTC 58.954 41.667 23.37 15.81 0.00 2.29
3227 3901 5.394443 GGAGGATAGTTGCATGCATTTTTCA 60.394 40.000 23.37 1.46 0.00 2.69
3228 3902 5.413499 AGGATAGTTGCATGCATTTTTCAC 58.587 37.500 23.37 15.47 0.00 3.18
3229 3903 4.567959 GGATAGTTGCATGCATTTTTCACC 59.432 41.667 23.37 14.80 0.00 4.02
3230 3904 2.769893 AGTTGCATGCATTTTTCACCC 58.230 42.857 23.37 1.38 0.00 4.61
3231 3905 2.104451 AGTTGCATGCATTTTTCACCCA 59.896 40.909 23.37 0.00 0.00 4.51
3232 3906 3.075884 GTTGCATGCATTTTTCACCCAT 58.924 40.909 23.37 0.00 0.00 4.00
3233 3907 3.420300 TGCATGCATTTTTCACCCATT 57.580 38.095 18.46 0.00 0.00 3.16
3234 3908 3.752665 TGCATGCATTTTTCACCCATTT 58.247 36.364 18.46 0.00 0.00 2.32
3235 3909 3.752222 TGCATGCATTTTTCACCCATTTC 59.248 39.130 18.46 0.00 0.00 2.17
3236 3910 4.004982 GCATGCATTTTTCACCCATTTCT 58.995 39.130 14.21 0.00 0.00 2.52
3237 3911 4.093850 GCATGCATTTTTCACCCATTTCTC 59.906 41.667 14.21 0.00 0.00 2.87
3238 3912 5.484715 CATGCATTTTTCACCCATTTCTCT 58.515 37.500 0.00 0.00 0.00 3.10
3239 3913 5.138125 TGCATTTTTCACCCATTTCTCTC 57.862 39.130 0.00 0.00 0.00 3.20
3240 3914 4.834496 TGCATTTTTCACCCATTTCTCTCT 59.166 37.500 0.00 0.00 0.00 3.10
3241 3915 5.047802 TGCATTTTTCACCCATTTCTCTCTC 60.048 40.000 0.00 0.00 0.00 3.20
3242 3916 5.047802 GCATTTTTCACCCATTTCTCTCTCA 60.048 40.000 0.00 0.00 0.00 3.27
3243 3917 6.385033 CATTTTTCACCCATTTCTCTCTCAC 58.615 40.000 0.00 0.00 0.00 3.51
3244 3918 3.703001 TTCACCCATTTCTCTCTCACC 57.297 47.619 0.00 0.00 0.00 4.02
3245 3919 2.907892 TCACCCATTTCTCTCTCACCT 58.092 47.619 0.00 0.00 0.00 4.00
3246 3920 2.834549 TCACCCATTTCTCTCTCACCTC 59.165 50.000 0.00 0.00 0.00 3.85
3247 3921 1.827969 ACCCATTTCTCTCTCACCTCG 59.172 52.381 0.00 0.00 0.00 4.63
3248 3922 1.827969 CCCATTTCTCTCTCACCTCGT 59.172 52.381 0.00 0.00 0.00 4.18
3249 3923 2.159170 CCCATTTCTCTCTCACCTCGTC 60.159 54.545 0.00 0.00 0.00 4.20
3250 3924 2.493675 CCATTTCTCTCTCACCTCGTCA 59.506 50.000 0.00 0.00 0.00 4.35
3251 3925 3.506810 CATTTCTCTCTCACCTCGTCAC 58.493 50.000 0.00 0.00 0.00 3.67
3252 3926 1.535833 TTCTCTCTCACCTCGTCACC 58.464 55.000 0.00 0.00 0.00 4.02
3253 3927 0.400594 TCTCTCTCACCTCGTCACCA 59.599 55.000 0.00 0.00 0.00 4.17
3254 3928 1.202891 TCTCTCTCACCTCGTCACCAA 60.203 52.381 0.00 0.00 0.00 3.67
3255 3929 1.821753 CTCTCTCACCTCGTCACCAAT 59.178 52.381 0.00 0.00 0.00 3.16
3256 3930 1.819288 TCTCTCACCTCGTCACCAATC 59.181 52.381 0.00 0.00 0.00 2.67
3257 3931 1.546029 CTCTCACCTCGTCACCAATCA 59.454 52.381 0.00 0.00 0.00 2.57
3258 3932 1.967779 TCTCACCTCGTCACCAATCAA 59.032 47.619 0.00 0.00 0.00 2.57
3259 3933 2.367241 TCTCACCTCGTCACCAATCAAA 59.633 45.455 0.00 0.00 0.00 2.69
3260 3934 3.007940 TCTCACCTCGTCACCAATCAAAT 59.992 43.478 0.00 0.00 0.00 2.32
3261 3935 3.750371 TCACCTCGTCACCAATCAAATT 58.250 40.909 0.00 0.00 0.00 1.82
3262 3936 3.751175 TCACCTCGTCACCAATCAAATTC 59.249 43.478 0.00 0.00 0.00 2.17
3263 3937 3.081804 ACCTCGTCACCAATCAAATTCC 58.918 45.455 0.00 0.00 0.00 3.01
3264 3938 3.081061 CCTCGTCACCAATCAAATTCCA 58.919 45.455 0.00 0.00 0.00 3.53
3265 3939 3.696051 CCTCGTCACCAATCAAATTCCAT 59.304 43.478 0.00 0.00 0.00 3.41
3266 3940 4.439153 CCTCGTCACCAATCAAATTCCATG 60.439 45.833 0.00 0.00 0.00 3.66
3267 3941 3.119531 TCGTCACCAATCAAATTCCATGC 60.120 43.478 0.00 0.00 0.00 4.06
3268 3942 3.524541 GTCACCAATCAAATTCCATGCC 58.475 45.455 0.00 0.00 0.00 4.40
3269 3943 3.196254 GTCACCAATCAAATTCCATGCCT 59.804 43.478 0.00 0.00 0.00 4.75
3270 3944 3.839490 TCACCAATCAAATTCCATGCCTT 59.161 39.130 0.00 0.00 0.00 4.35
3271 3945 4.286549 TCACCAATCAAATTCCATGCCTTT 59.713 37.500 0.00 0.00 0.00 3.11
3272 3946 5.005094 CACCAATCAAATTCCATGCCTTTT 58.995 37.500 0.00 0.00 0.00 2.27
3273 3947 6.013898 TCACCAATCAAATTCCATGCCTTTTA 60.014 34.615 0.00 0.00 0.00 1.52
3274 3948 6.824704 CACCAATCAAATTCCATGCCTTTTAT 59.175 34.615 0.00 0.00 0.00 1.40
3275 3949 7.337436 CACCAATCAAATTCCATGCCTTTTATT 59.663 33.333 0.00 0.00 0.00 1.40
3276 3950 7.889600 ACCAATCAAATTCCATGCCTTTTATTT 59.110 29.630 0.00 0.00 0.00 1.40
3277 3951 8.741841 CCAATCAAATTCCATGCCTTTTATTTT 58.258 29.630 0.00 0.00 0.00 1.82
3287 3961 9.199645 TCCATGCCTTTTATTTTAGATGATTCA 57.800 29.630 0.00 0.00 0.00 2.57
3288 3962 9.991906 CCATGCCTTTTATTTTAGATGATTCAT 57.008 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 0.316689 CAACGTTCAACCAACCTCGC 60.317 55.000 0.00 0.00 0.00 5.03
86 87 4.559643 CCACTTGTTTTACAACGTTCAACC 59.440 41.667 0.00 0.00 33.96 3.77
95 96 5.558307 CGACGTAAACCACTTGTTTTACAA 58.442 37.500 9.30 0.00 44.80 2.41
195 196 9.729023 TCTTAACAATAACAAAGAACACACATG 57.271 29.630 0.00 0.00 0.00 3.21
196 197 9.950680 CTCTTAACAATAACAAAGAACACACAT 57.049 29.630 0.00 0.00 0.00 3.21
205 206 9.769093 CCGTTTATCCTCTTAACAATAACAAAG 57.231 33.333 0.00 0.00 0.00 2.77
206 207 8.732531 CCCGTTTATCCTCTTAACAATAACAAA 58.267 33.333 0.00 0.00 0.00 2.83
207 208 8.102047 TCCCGTTTATCCTCTTAACAATAACAA 58.898 33.333 0.00 0.00 0.00 2.83
208 209 7.622713 TCCCGTTTATCCTCTTAACAATAACA 58.377 34.615 0.00 0.00 0.00 2.41
209 210 8.672823 ATCCCGTTTATCCTCTTAACAATAAC 57.327 34.615 0.00 0.00 0.00 1.89
210 211 9.333724 GAATCCCGTTTATCCTCTTAACAATAA 57.666 33.333 0.00 0.00 0.00 1.40
211 212 8.711170 AGAATCCCGTTTATCCTCTTAACAATA 58.289 33.333 0.00 0.00 0.00 1.90
212 213 7.574607 AGAATCCCGTTTATCCTCTTAACAAT 58.425 34.615 0.00 0.00 0.00 2.71
254 262 0.622154 ACCCAACCGATCCCCATGTA 60.622 55.000 0.00 0.00 0.00 2.29
383 391 6.879400 ACAAGGCTACTAATAAGAACCAGAG 58.121 40.000 0.00 0.00 0.00 3.35
395 403 5.163343 ACACTGAACAAGACAAGGCTACTAA 60.163 40.000 0.00 0.00 0.00 2.24
416 424 8.864024 CGGTACATTTCATCATATATCAGACAC 58.136 37.037 0.00 0.00 0.00 3.67
419 427 9.639601 GAACGGTACATTTCATCATATATCAGA 57.360 33.333 0.00 0.00 0.00 3.27
425 433 9.119418 TGATTTGAACGGTACATTTCATCATAT 57.881 29.630 8.70 2.76 31.31 1.78
426 434 8.499403 TGATTTGAACGGTACATTTCATCATA 57.501 30.769 8.70 0.00 31.31 2.15
427 435 7.389803 TGATTTGAACGGTACATTTCATCAT 57.610 32.000 8.70 5.39 31.31 2.45
428 436 6.809630 TGATTTGAACGGTACATTTCATCA 57.190 33.333 8.70 8.00 31.31 3.07
445 453 7.334421 ACCCTTCGGATATTATCGATTGATTTG 59.666 37.037 1.71 0.00 35.99 2.32
447 455 6.947464 ACCCTTCGGATATTATCGATTGATT 58.053 36.000 1.71 0.00 35.99 2.57
525 533 4.201851 CCATCCAAACACGAATGATCTGTC 60.202 45.833 0.00 0.00 0.00 3.51
526 534 3.691118 CCATCCAAACACGAATGATCTGT 59.309 43.478 0.00 0.00 0.00 3.41
530 538 3.367292 GCAACCATCCAAACACGAATGAT 60.367 43.478 0.00 0.00 0.00 2.45
536 544 0.039256 CCTGCAACCATCCAAACACG 60.039 55.000 0.00 0.00 0.00 4.49
679 693 9.106977 TGTGCTCCTGTGGGTATATAAATAATA 57.893 33.333 0.00 0.00 0.00 0.98
699 715 2.975851 CAGCGACTTTGAAAATGTGCTC 59.024 45.455 0.00 0.00 36.76 4.26
701 717 2.053627 CCAGCGACTTTGAAAATGTGC 58.946 47.619 0.00 0.00 34.00 4.57
870 890 1.424240 GCGGCTTCGGCTAGTTTTC 59.576 57.895 0.00 0.00 41.44 2.29
884 904 1.078918 GGGGGTATATAACGGCGGC 60.079 63.158 13.24 0.00 0.00 6.53
987 1012 1.707427 AGCCTCATGTTTCCTGGACTT 59.293 47.619 0.00 0.00 0.00 3.01
1140 1168 2.922503 TTGAGCGCCCTCCTGACA 60.923 61.111 2.29 0.00 37.29 3.58
1185 1213 2.119611 TGGAAGAGGAGGCGGACA 59.880 61.111 0.00 0.00 0.00 4.02
1236 1264 0.727398 GTTGACCACATAAGCTCCGC 59.273 55.000 0.00 0.00 0.00 5.54
1253 1309 5.341993 CGTCAATTTTATTGACACGCATGTT 59.658 36.000 24.25 0.00 46.70 2.71
1258 1314 2.272700 CGCGTCAATTTTATTGACACGC 59.727 45.455 22.03 20.89 46.70 5.34
1265 1321 2.250188 GCTGCACGCGTCAATTTTATT 58.750 42.857 9.86 0.00 0.00 1.40
1278 1334 2.160117 CAAACTAAATTTGCGCTGCACG 60.160 45.455 9.73 4.61 41.30 5.34
1315 1371 1.265635 TCTCGGTTCATTTTTGCCACG 59.734 47.619 0.00 0.00 0.00 4.94
1316 1372 2.661594 GTCTCGGTTCATTTTTGCCAC 58.338 47.619 0.00 0.00 0.00 5.01
1347 1403 2.288666 GACAAGTTCAGTTGGTGAGCA 58.711 47.619 0.00 0.00 38.83 4.26
1349 1405 5.300752 AGTATGACAAGTTCAGTTGGTGAG 58.699 41.667 0.00 0.00 37.77 3.51
1352 1408 4.307432 CGAGTATGACAAGTTCAGTTGGT 58.693 43.478 0.00 0.00 37.77 3.67
1359 1415 2.273370 TCGCCGAGTATGACAAGTTC 57.727 50.000 0.00 0.00 0.00 3.01
1376 1432 7.293402 ACATTTATCATGGCATTTTTGTTCG 57.707 32.000 0.00 0.00 0.00 3.95
1390 1446 8.262227 AGTCATGGCAAAATGAACATTTATCAT 58.738 29.630 12.20 12.32 39.88 2.45
1394 1450 9.770097 TTTTAGTCATGGCAAAATGAACATTTA 57.230 25.926 12.20 0.00 39.88 1.40
1416 1472 9.661563 AACTATCCAGTGAACGTCATATTTTTA 57.338 29.630 0.00 0.00 34.36 1.52
1420 1476 7.069578 ACCTAACTATCCAGTGAACGTCATATT 59.930 37.037 0.00 0.00 34.36 1.28
1423 1479 4.710375 ACCTAACTATCCAGTGAACGTCAT 59.290 41.667 0.00 0.00 34.36 3.06
1454 1510 6.412943 GCATGCATGTCATCGTTATATTATGC 59.587 38.462 26.79 4.53 39.89 3.14
1689 1747 1.347320 GGACGTCGAAGTGGATGTTC 58.653 55.000 9.23 0.00 36.34 3.18
1812 1870 0.317479 CCTCCACGTCGAAGTCCTTT 59.683 55.000 0.00 0.00 0.00 3.11
1998 2056 1.750572 CGACCGTCTCGTAGTCCTCG 61.751 65.000 0.00 0.00 37.64 4.63
2021 2079 2.034999 TGAACCCGGGCATGAACC 59.965 61.111 24.08 2.18 0.00 3.62
2313 2401 2.793585 CGACCTTGTTCATGCATGCATC 60.794 50.000 30.07 19.24 33.90 3.91
2345 2433 1.703411 CAGGGGCAAAGGTTCTTCAA 58.297 50.000 0.00 0.00 0.00 2.69
2346 2434 0.178964 CCAGGGGCAAAGGTTCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
2347 2435 2.658548 CCAGGGGCAAAGGTTCTTC 58.341 57.895 0.00 0.00 0.00 2.87
2348 2436 4.952482 CCAGGGGCAAAGGTTCTT 57.048 55.556 0.00 0.00 0.00 2.52
2367 2455 4.160635 GAAATCCGCACACCGCCG 62.161 66.667 0.00 0.00 37.30 6.46
2388 2476 4.014406 ACCGGGAAAACCACAAGATTATC 58.986 43.478 6.32 0.00 40.22 1.75
2395 2483 0.033405 TTGGACCGGGAAAACCACAA 60.033 50.000 6.32 0.00 40.22 3.33
2405 2493 2.143876 AAAGAATGGATTGGACCGGG 57.856 50.000 6.32 0.00 0.00 5.73
2407 2495 4.989279 ATCAAAAGAATGGATTGGACCG 57.011 40.909 0.00 0.00 0.00 4.79
2451 2540 8.830580 GTGGATGATACATATATGTTGCCATAC 58.169 37.037 22.90 20.82 41.97 2.39
2473 2562 2.289569 ACCGTAACTTTATTGCCGTGGA 60.290 45.455 0.00 0.00 0.00 4.02
2474 2563 2.078392 ACCGTAACTTTATTGCCGTGG 58.922 47.619 0.00 0.00 0.00 4.94
2487 3150 0.808755 CCATTTGCCAGGACCGTAAC 59.191 55.000 0.00 0.00 0.00 2.50
2491 3154 1.606885 ATTGCCATTTGCCAGGACCG 61.607 55.000 0.00 0.00 40.16 4.79
2496 3159 6.981762 TTGTAATAAATTGCCATTTGCCAG 57.018 33.333 6.03 0.00 40.16 4.85
2504 3167 8.370940 TGAAAGGTCATTTGTAATAAATTGCCA 58.629 29.630 0.00 0.00 0.00 4.92
2552 3215 9.314321 CCAACCACGTTGATATCTATATAATCC 57.686 37.037 3.98 0.00 45.28 3.01
2553 3216 9.871238 ACCAACCACGTTGATATCTATATAATC 57.129 33.333 3.98 0.00 45.28 1.75
2554 3217 9.653287 CACCAACCACGTTGATATCTATATAAT 57.347 33.333 3.98 0.00 45.28 1.28
2555 3218 8.862085 TCACCAACCACGTTGATATCTATATAA 58.138 33.333 3.98 0.00 45.28 0.98
2556 3219 8.411991 TCACCAACCACGTTGATATCTATATA 57.588 34.615 3.98 0.00 45.28 0.86
2557 3220 7.015292 ACTCACCAACCACGTTGATATCTATAT 59.985 37.037 3.98 0.00 45.28 0.86
2567 3230 0.808453 ACGACTCACCAACCACGTTG 60.808 55.000 0.00 0.00 42.49 4.10
2576 3239 1.167781 TGTAGCGTCACGACTCACCA 61.168 55.000 0.00 0.00 0.00 4.17
2577 3240 0.039798 TTGTAGCGTCACGACTCACC 60.040 55.000 0.00 0.00 0.00 4.02
2578 3241 1.328439 CTTGTAGCGTCACGACTCAC 58.672 55.000 0.00 0.00 0.00 3.51
2579 3242 0.386858 GCTTGTAGCGTCACGACTCA 60.387 55.000 0.00 0.00 0.00 3.41
2589 3252 3.802685 GTCTACCCTTTATGCTTGTAGCG 59.197 47.826 0.00 0.00 46.26 4.26
2635 3298 2.586079 CGGGTAGGTGCATGCTCG 60.586 66.667 20.33 7.46 0.00 5.03
2645 3308 2.674420 TGGTAGGATTTCTCGGGTAGG 58.326 52.381 0.00 0.00 0.00 3.18
2651 3314 3.887621 TCTGGTTGGTAGGATTTCTCG 57.112 47.619 0.00 0.00 0.00 4.04
2673 3336 1.596408 GCCAAATGAACCGGCCATT 59.404 52.632 14.74 14.74 40.07 3.16
2728 3391 1.080772 CTTCGCTGTAGTCGCCACA 60.081 57.895 0.00 0.00 0.00 4.17
2730 3393 0.450583 CTACTTCGCTGTAGTCGCCA 59.549 55.000 6.52 0.00 36.19 5.69
2770 3435 2.649531 TCACATGTTTTCTTCCGGGT 57.350 45.000 0.00 0.00 0.00 5.28
2771 3436 5.399013 GTTATTCACATGTTTTCTTCCGGG 58.601 41.667 0.00 0.00 0.00 5.73
2774 3439 6.009115 ACGGTTATTCACATGTTTTCTTCC 57.991 37.500 0.00 0.00 0.00 3.46
2778 3443 8.473796 GTTTGTAACGGTTATTCACATGTTTTC 58.526 33.333 3.59 0.00 30.51 2.29
2794 3459 5.738118 TTCCTTTGTACTGTTTGTAACGG 57.262 39.130 0.00 0.00 43.50 4.44
2821 3486 2.357952 GCTCGTTTCAACTGGTCCTTTT 59.642 45.455 0.00 0.00 0.00 2.27
2822 3487 1.947456 GCTCGTTTCAACTGGTCCTTT 59.053 47.619 0.00 0.00 0.00 3.11
2824 3489 0.759346 AGCTCGTTTCAACTGGTCCT 59.241 50.000 0.00 0.00 0.00 3.85
2825 3490 2.067013 GTAGCTCGTTTCAACTGGTCC 58.933 52.381 0.00 0.00 0.00 4.46
2834 3499 2.608090 GCCCAATACTGTAGCTCGTTTC 59.392 50.000 0.00 0.00 0.00 2.78
2838 3503 1.683917 AGAGCCCAATACTGTAGCTCG 59.316 52.381 16.35 0.00 45.28 5.03
2856 3521 0.253044 CCGCTCAGGAAATGGGAAGA 59.747 55.000 0.00 0.00 45.00 2.87
2857 3522 1.379642 GCCGCTCAGGAAATGGGAAG 61.380 60.000 0.00 0.00 45.00 3.46
2858 3523 1.378514 GCCGCTCAGGAAATGGGAA 60.379 57.895 0.00 0.00 45.00 3.97
2859 3524 2.272146 GCCGCTCAGGAAATGGGA 59.728 61.111 0.00 0.00 45.00 4.37
2860 3525 3.204827 CGCCGCTCAGGAAATGGG 61.205 66.667 0.00 0.00 45.00 4.00
2861 3526 3.204827 CCGCCGCTCAGGAAATGG 61.205 66.667 0.00 0.00 45.00 3.16
2862 3527 2.125147 TCCGCCGCTCAGGAAATG 60.125 61.111 0.00 0.00 45.00 2.32
2863 3528 2.187946 CTCCGCCGCTCAGGAAAT 59.812 61.111 0.00 0.00 45.00 2.17
2864 3529 4.082523 CCTCCGCCGCTCAGGAAA 62.083 66.667 0.00 0.00 45.00 3.13
2868 3533 4.504916 CTCACCTCCGCCGCTCAG 62.505 72.222 0.00 0.00 0.00 3.35
2870 3535 2.579684 AAATCTCACCTCCGCCGCTC 62.580 60.000 0.00 0.00 0.00 5.03
2871 3536 2.579684 GAAATCTCACCTCCGCCGCT 62.580 60.000 0.00 0.00 0.00 5.52
2872 3537 2.125106 AAATCTCACCTCCGCCGC 60.125 61.111 0.00 0.00 0.00 6.53
2873 3538 1.521681 GGAAATCTCACCTCCGCCG 60.522 63.158 0.00 0.00 0.00 6.46
2874 3539 0.253327 AAGGAAATCTCACCTCCGCC 59.747 55.000 0.00 0.00 35.25 6.13
2875 3540 2.483889 CCTAAGGAAATCTCACCTCCGC 60.484 54.545 0.00 0.00 35.25 5.54
2895 3560 7.711339 CCAACTAGTCCAATAAGTACTGATTCC 59.289 40.741 2.09 0.00 0.00 3.01
2906 3571 5.933463 CCACGTTTACCAACTAGTCCAATAA 59.067 40.000 0.00 0.00 0.00 1.40
2908 3573 4.320870 CCACGTTTACCAACTAGTCCAAT 58.679 43.478 0.00 0.00 0.00 3.16
2909 3574 3.731089 CCACGTTTACCAACTAGTCCAA 58.269 45.455 0.00 0.00 0.00 3.53
2910 3575 2.548493 GCCACGTTTACCAACTAGTCCA 60.548 50.000 0.00 0.00 0.00 4.02
2911 3576 2.071540 GCCACGTTTACCAACTAGTCC 58.928 52.381 0.00 0.00 0.00 3.85
2912 3577 2.477754 GTGCCACGTTTACCAACTAGTC 59.522 50.000 0.00 0.00 0.00 2.59
2914 3579 1.458064 CGTGCCACGTTTACCAACTAG 59.542 52.381 9.53 0.00 36.74 2.57
2915 3580 1.068281 TCGTGCCACGTTTACCAACTA 59.932 47.619 17.83 0.00 43.14 2.24
2916 3581 0.179078 TCGTGCCACGTTTACCAACT 60.179 50.000 17.83 0.00 43.14 3.16
2917 3582 0.233848 CTCGTGCCACGTTTACCAAC 59.766 55.000 17.83 0.00 43.14 3.77
2918 3583 1.500512 GCTCGTGCCACGTTTACCAA 61.501 55.000 17.83 0.00 43.14 3.67
2919 3584 1.957186 GCTCGTGCCACGTTTACCA 60.957 57.895 17.83 0.00 43.14 3.25
2921 3586 0.515564 ATTGCTCGTGCCACGTTTAC 59.484 50.000 17.83 5.93 43.14 2.01
2924 3589 1.568612 CTGATTGCTCGTGCCACGTT 61.569 55.000 17.83 0.00 43.14 3.99
2925 3590 2.029288 CTGATTGCTCGTGCCACGT 61.029 57.895 17.83 0.00 43.14 4.49
2926 3591 1.568612 AACTGATTGCTCGTGCCACG 61.569 55.000 11.80 11.80 44.19 4.94
2927 3592 0.593128 AAACTGATTGCTCGTGCCAC 59.407 50.000 7.05 0.00 38.71 5.01
2928 3593 1.001487 CAAAACTGATTGCTCGTGCCA 60.001 47.619 7.05 0.00 38.71 4.92
2929 3594 1.689959 CAAAACTGATTGCTCGTGCC 58.310 50.000 7.05 0.00 38.71 5.01
2937 3602 5.349270 CACCCAATATGTGCAAAACTGATTG 59.651 40.000 0.00 0.00 34.18 2.67
2938 3603 5.245751 TCACCCAATATGTGCAAAACTGATT 59.754 36.000 0.00 0.00 33.71 2.57
2939 3604 4.771577 TCACCCAATATGTGCAAAACTGAT 59.228 37.500 0.00 0.00 33.71 2.90
2940 3605 4.148079 TCACCCAATATGTGCAAAACTGA 58.852 39.130 0.00 0.00 33.71 3.41
2941 3606 4.517952 TCACCCAATATGTGCAAAACTG 57.482 40.909 0.00 0.00 33.71 3.16
2942 3607 5.543507 TTTCACCCAATATGTGCAAAACT 57.456 34.783 0.00 0.00 33.71 2.66
2943 3608 6.610741 TTTTTCACCCAATATGTGCAAAAC 57.389 33.333 0.00 0.00 35.14 2.43
2989 3654 2.955660 AGTGATTTTGAGTTCCCGCAAA 59.044 40.909 0.00 0.00 38.38 3.68
2990 3655 2.582052 AGTGATTTTGAGTTCCCGCAA 58.418 42.857 0.00 0.00 0.00 4.85
2991 3656 2.270352 AGTGATTTTGAGTTCCCGCA 57.730 45.000 0.00 0.00 0.00 5.69
2992 3657 3.335579 ACTAGTGATTTTGAGTTCCCGC 58.664 45.455 0.00 0.00 0.00 6.13
2993 3658 6.092259 CCTTAACTAGTGATTTTGAGTTCCCG 59.908 42.308 0.00 0.00 34.15 5.14
2996 3661 7.981102 ACCCTTAACTAGTGATTTTGAGTTC 57.019 36.000 0.00 0.00 34.15 3.01
2997 3662 9.281371 GTAACCCTTAACTAGTGATTTTGAGTT 57.719 33.333 0.00 0.00 36.21 3.01
2998 3663 7.881751 GGTAACCCTTAACTAGTGATTTTGAGT 59.118 37.037 0.00 0.00 0.00 3.41
3019 3684 6.033966 CCGAATGAAATTAGCAAAGGGTAAC 58.966 40.000 0.00 0.00 39.57 2.50
3021 3686 5.502079 TCCGAATGAAATTAGCAAAGGGTA 58.498 37.500 0.00 0.00 36.07 3.69
3022 3687 4.340617 TCCGAATGAAATTAGCAAAGGGT 58.659 39.130 0.00 0.00 36.07 4.34
3023 3688 4.981806 TCCGAATGAAATTAGCAAAGGG 57.018 40.909 0.00 0.00 36.07 3.95
3026 3691 6.516718 TGGTTTTCCGAATGAAATTAGCAAA 58.483 32.000 0.00 0.00 42.38 3.68
3027 3692 6.090483 TGGTTTTCCGAATGAAATTAGCAA 57.910 33.333 0.00 0.00 42.38 3.91
3028 3693 5.713792 TGGTTTTCCGAATGAAATTAGCA 57.286 34.783 0.00 0.00 42.38 3.49
3029 3694 7.096065 GCATATGGTTTTCCGAATGAAATTAGC 60.096 37.037 4.56 0.00 42.38 3.09
3030 3695 7.382218 GGCATATGGTTTTCCGAATGAAATTAG 59.618 37.037 4.56 0.00 42.38 1.73
3031 3696 7.147828 TGGCATATGGTTTTCCGAATGAAATTA 60.148 33.333 4.56 0.00 42.38 1.40
3032 3697 6.048509 GGCATATGGTTTTCCGAATGAAATT 58.951 36.000 4.56 0.00 42.38 1.82
3033 3698 5.128499 TGGCATATGGTTTTCCGAATGAAAT 59.872 36.000 4.56 0.00 42.38 2.17
3034 3699 4.464244 TGGCATATGGTTTTCCGAATGAAA 59.536 37.500 4.56 0.00 44.36 2.69
3035 3700 4.019858 TGGCATATGGTTTTCCGAATGAA 58.980 39.130 4.56 0.00 44.36 2.57
3036 3701 3.625853 TGGCATATGGTTTTCCGAATGA 58.374 40.909 4.56 0.00 44.36 2.57
3037 3702 4.111916 GTTGGCATATGGTTTTCCGAATG 58.888 43.478 4.56 0.00 44.36 2.67
3038 3703 4.023291 AGTTGGCATATGGTTTTCCGAAT 58.977 39.130 4.56 0.00 44.36 3.34
3039 3704 3.192422 CAGTTGGCATATGGTTTTCCGAA 59.808 43.478 4.56 0.00 44.36 4.30
3040 3705 2.752354 CAGTTGGCATATGGTTTTCCGA 59.248 45.455 4.56 0.00 44.36 4.55
3041 3706 2.735126 GCAGTTGGCATATGGTTTTCCG 60.735 50.000 4.56 0.00 42.47 4.30
3042 3707 2.892374 GCAGTTGGCATATGGTTTTCC 58.108 47.619 4.56 0.00 43.97 3.13
3059 3733 3.812053 GCTTGGTGAAGGTAGATATGCAG 59.188 47.826 0.00 0.00 0.00 4.41
3060 3734 3.199727 TGCTTGGTGAAGGTAGATATGCA 59.800 43.478 0.00 0.00 0.00 3.96
3069 3743 0.034896 CTACGGTGCTTGGTGAAGGT 59.965 55.000 0.00 0.00 0.00 3.50
3075 3749 1.447838 CGCATCTACGGTGCTTGGT 60.448 57.895 0.00 0.00 40.37 3.67
3084 3758 2.655364 CGAGCACCCGCATCTACG 60.655 66.667 0.00 0.00 42.27 3.51
3093 3767 3.134127 GTTCCATGCCGAGCACCC 61.134 66.667 0.50 0.00 43.04 4.61
3132 3806 0.673437 CAGTTGGCCGTGGTGATTTT 59.327 50.000 0.00 0.00 0.00 1.82
3136 3810 1.525077 GAACAGTTGGCCGTGGTGA 60.525 57.895 0.00 0.00 0.00 4.02
3137 3811 0.250124 TAGAACAGTTGGCCGTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
3138 3812 0.034896 CTAGAACAGTTGGCCGTGGT 59.965 55.000 0.00 0.00 0.00 4.16
3139 3813 1.298859 GCTAGAACAGTTGGCCGTGG 61.299 60.000 0.00 0.00 0.00 4.94
3140 3814 1.298859 GGCTAGAACAGTTGGCCGTG 61.299 60.000 0.00 0.00 33.30 4.94
3141 3815 1.003718 GGCTAGAACAGTTGGCCGT 60.004 57.895 0.00 0.00 33.30 5.68
3142 3816 0.321653 AAGGCTAGAACAGTTGGCCG 60.322 55.000 12.93 0.00 46.44 6.13
3143 3817 1.003696 AGAAGGCTAGAACAGTTGGCC 59.996 52.381 11.55 11.55 42.74 5.36
3144 3818 2.351455 GAGAAGGCTAGAACAGTTGGC 58.649 52.381 0.00 0.00 0.00 4.52
3145 3819 2.231478 TCGAGAAGGCTAGAACAGTTGG 59.769 50.000 0.00 0.00 0.00 3.77
3146 3820 3.506810 CTCGAGAAGGCTAGAACAGTTG 58.493 50.000 6.58 0.00 0.00 3.16
3147 3821 2.494073 CCTCGAGAAGGCTAGAACAGTT 59.506 50.000 15.71 0.00 38.67 3.16
3148 3822 2.096248 CCTCGAGAAGGCTAGAACAGT 58.904 52.381 15.71 0.00 38.67 3.55
3149 3823 2.357637 CTCCTCGAGAAGGCTAGAACAG 59.642 54.545 15.71 0.00 45.78 3.16
3150 3824 2.291024 ACTCCTCGAGAAGGCTAGAACA 60.291 50.000 15.71 0.00 45.78 3.18
3151 3825 2.356695 GACTCCTCGAGAAGGCTAGAAC 59.643 54.545 15.71 0.00 45.78 3.01
3152 3826 2.645802 GACTCCTCGAGAAGGCTAGAA 58.354 52.381 15.71 0.00 45.78 2.10
3153 3827 1.473610 CGACTCCTCGAGAAGGCTAGA 60.474 57.143 15.71 0.00 45.78 2.43
3154 3828 0.941542 CGACTCCTCGAGAAGGCTAG 59.058 60.000 15.71 3.88 45.78 3.42
3155 3829 0.252479 ACGACTCCTCGAGAAGGCTA 59.748 55.000 15.71 0.00 45.78 3.93
3156 3830 1.001887 ACGACTCCTCGAGAAGGCT 60.002 57.895 15.71 0.00 45.78 4.58
3157 3831 1.430228 GACGACTCCTCGAGAAGGC 59.570 63.158 15.71 3.37 45.78 4.35
3159 3833 0.095589 CACGACGACTCCTCGAGAAG 59.904 60.000 15.71 5.24 43.06 2.85
3160 3834 1.296755 CCACGACGACTCCTCGAGAA 61.297 60.000 15.71 0.00 43.06 2.87
3161 3835 1.740664 CCACGACGACTCCTCGAGA 60.741 63.158 15.71 0.00 43.06 4.04
3162 3836 2.785921 CCACGACGACTCCTCGAG 59.214 66.667 5.13 5.13 43.06 4.04
3163 3837 3.429141 GCCACGACGACTCCTCGA 61.429 66.667 0.00 0.00 43.06 4.04
3164 3838 3.432588 AGCCACGACGACTCCTCG 61.433 66.667 0.00 0.00 46.06 4.63
3165 3839 2.179517 CAGCCACGACGACTCCTC 59.820 66.667 0.00 0.00 0.00 3.71
3166 3840 2.597805 ACAGCCACGACGACTCCT 60.598 61.111 0.00 0.00 0.00 3.69
3167 3841 2.430921 CACAGCCACGACGACTCC 60.431 66.667 0.00 0.00 0.00 3.85
3168 3842 2.430921 CCACAGCCACGACGACTC 60.431 66.667 0.00 0.00 0.00 3.36
3169 3843 4.664677 GCCACAGCCACGACGACT 62.665 66.667 0.00 0.00 0.00 4.18
3182 3856 0.609131 AACTGCTACATGTGGGCCAC 60.609 55.000 29.75 29.75 34.56 5.01
3183 3857 0.608856 CAACTGCTACATGTGGGCCA 60.609 55.000 9.11 0.00 0.00 5.36
3184 3858 1.315257 CCAACTGCTACATGTGGGCC 61.315 60.000 9.11 0.00 0.00 5.80
3185 3859 1.315257 CCCAACTGCTACATGTGGGC 61.315 60.000 9.11 13.19 0.00 5.36
3186 3860 0.327924 TCCCAACTGCTACATGTGGG 59.672 55.000 9.11 8.84 36.50 4.61
3187 3861 1.679944 CCTCCCAACTGCTACATGTGG 60.680 57.143 9.11 6.75 0.00 4.17
3188 3862 1.278985 TCCTCCCAACTGCTACATGTG 59.721 52.381 9.11 0.00 0.00 3.21
3189 3863 1.656587 TCCTCCCAACTGCTACATGT 58.343 50.000 2.69 2.69 0.00 3.21
3190 3864 3.389329 ACTATCCTCCCAACTGCTACATG 59.611 47.826 0.00 0.00 0.00 3.21
3191 3865 3.658725 ACTATCCTCCCAACTGCTACAT 58.341 45.455 0.00 0.00 0.00 2.29
3192 3866 3.116096 ACTATCCTCCCAACTGCTACA 57.884 47.619 0.00 0.00 0.00 2.74
3193 3867 3.798202 CAACTATCCTCCCAACTGCTAC 58.202 50.000 0.00 0.00 0.00 3.58
3194 3868 2.170607 GCAACTATCCTCCCAACTGCTA 59.829 50.000 0.00 0.00 0.00 3.49
3195 3869 1.065126 GCAACTATCCTCCCAACTGCT 60.065 52.381 0.00 0.00 0.00 4.24
3196 3870 1.340017 TGCAACTATCCTCCCAACTGC 60.340 52.381 0.00 0.00 0.00 4.40
3197 3871 2.787473 TGCAACTATCCTCCCAACTG 57.213 50.000 0.00 0.00 0.00 3.16
3198 3872 2.684927 GCATGCAACTATCCTCCCAACT 60.685 50.000 14.21 0.00 0.00 3.16
3199 3873 1.678101 GCATGCAACTATCCTCCCAAC 59.322 52.381 14.21 0.00 0.00 3.77
3200 3874 1.284491 TGCATGCAACTATCCTCCCAA 59.716 47.619 20.30 0.00 0.00 4.12
3201 3875 0.918258 TGCATGCAACTATCCTCCCA 59.082 50.000 20.30 0.00 0.00 4.37
3202 3876 2.283145 ATGCATGCAACTATCCTCCC 57.717 50.000 26.68 0.00 0.00 4.30
3203 3877 4.660789 AAAATGCATGCAACTATCCTCC 57.339 40.909 26.68 0.00 0.00 4.30
3204 3878 5.517770 GTGAAAAATGCATGCAACTATCCTC 59.482 40.000 26.68 14.61 0.00 3.71
3205 3879 5.413499 GTGAAAAATGCATGCAACTATCCT 58.587 37.500 26.68 2.56 0.00 3.24
3206 3880 4.567959 GGTGAAAAATGCATGCAACTATCC 59.432 41.667 26.68 16.48 0.00 2.59
3207 3881 4.567959 GGGTGAAAAATGCATGCAACTATC 59.432 41.667 26.68 19.92 0.00 2.08
3208 3882 4.020396 TGGGTGAAAAATGCATGCAACTAT 60.020 37.500 26.68 11.83 0.00 2.12
3209 3883 3.323115 TGGGTGAAAAATGCATGCAACTA 59.677 39.130 26.68 0.00 0.00 2.24
3210 3884 2.104451 TGGGTGAAAAATGCATGCAACT 59.896 40.909 26.68 12.42 0.00 3.16
3211 3885 2.492012 TGGGTGAAAAATGCATGCAAC 58.508 42.857 26.68 16.74 0.00 4.17
3212 3886 2.924757 TGGGTGAAAAATGCATGCAA 57.075 40.000 26.68 8.49 0.00 4.08
3213 3887 3.420300 AATGGGTGAAAAATGCATGCA 57.580 38.095 25.04 25.04 0.00 3.96
3214 3888 4.004982 AGAAATGGGTGAAAAATGCATGC 58.995 39.130 11.82 11.82 0.00 4.06
3215 3889 5.484715 AGAGAAATGGGTGAAAAATGCATG 58.515 37.500 0.00 0.00 0.00 4.06
3216 3890 5.482878 AGAGAGAAATGGGTGAAAAATGCAT 59.517 36.000 0.00 0.00 0.00 3.96
3217 3891 4.834496 AGAGAGAAATGGGTGAAAAATGCA 59.166 37.500 0.00 0.00 0.00 3.96
3218 3892 5.047802 TGAGAGAGAAATGGGTGAAAAATGC 60.048 40.000 0.00 0.00 0.00 3.56
3219 3893 6.385033 GTGAGAGAGAAATGGGTGAAAAATG 58.615 40.000 0.00 0.00 0.00 2.32
3220 3894 5.478332 GGTGAGAGAGAAATGGGTGAAAAAT 59.522 40.000 0.00 0.00 0.00 1.82
3221 3895 4.827284 GGTGAGAGAGAAATGGGTGAAAAA 59.173 41.667 0.00 0.00 0.00 1.94
3222 3896 4.104738 AGGTGAGAGAGAAATGGGTGAAAA 59.895 41.667 0.00 0.00 0.00 2.29
3223 3897 3.652869 AGGTGAGAGAGAAATGGGTGAAA 59.347 43.478 0.00 0.00 0.00 2.69
3224 3898 3.251484 AGGTGAGAGAGAAATGGGTGAA 58.749 45.455 0.00 0.00 0.00 3.18
3225 3899 2.834549 GAGGTGAGAGAGAAATGGGTGA 59.165 50.000 0.00 0.00 0.00 4.02
3226 3900 2.417924 CGAGGTGAGAGAGAAATGGGTG 60.418 54.545 0.00 0.00 0.00 4.61
3227 3901 1.827969 CGAGGTGAGAGAGAAATGGGT 59.172 52.381 0.00 0.00 0.00 4.51
3228 3902 1.827969 ACGAGGTGAGAGAGAAATGGG 59.172 52.381 0.00 0.00 0.00 4.00
3229 3903 2.493675 TGACGAGGTGAGAGAGAAATGG 59.506 50.000 0.00 0.00 0.00 3.16
3230 3904 3.506810 GTGACGAGGTGAGAGAGAAATG 58.493 50.000 0.00 0.00 0.00 2.32
3231 3905 2.494073 GGTGACGAGGTGAGAGAGAAAT 59.506 50.000 0.00 0.00 0.00 2.17
3232 3906 1.887198 GGTGACGAGGTGAGAGAGAAA 59.113 52.381 0.00 0.00 0.00 2.52
3233 3907 1.202891 TGGTGACGAGGTGAGAGAGAA 60.203 52.381 0.00 0.00 0.00 2.87
3234 3908 0.400594 TGGTGACGAGGTGAGAGAGA 59.599 55.000 0.00 0.00 0.00 3.10
3235 3909 1.248486 TTGGTGACGAGGTGAGAGAG 58.752 55.000 0.00 0.00 0.00 3.20
3236 3910 1.819288 GATTGGTGACGAGGTGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
3237 3911 1.546029 TGATTGGTGACGAGGTGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
3238 3912 1.627864 TGATTGGTGACGAGGTGAGA 58.372 50.000 0.00 0.00 0.00 3.27
3239 3913 2.455674 TTGATTGGTGACGAGGTGAG 57.544 50.000 0.00 0.00 0.00 3.51
3240 3914 2.920724 TTTGATTGGTGACGAGGTGA 57.079 45.000 0.00 0.00 0.00 4.02
3241 3915 3.119849 GGAATTTGATTGGTGACGAGGTG 60.120 47.826 0.00 0.00 0.00 4.00
3242 3916 3.081804 GGAATTTGATTGGTGACGAGGT 58.918 45.455 0.00 0.00 0.00 3.85
3243 3917 3.081061 TGGAATTTGATTGGTGACGAGG 58.919 45.455 0.00 0.00 0.00 4.63
3244 3918 4.665212 CATGGAATTTGATTGGTGACGAG 58.335 43.478 0.00 0.00 0.00 4.18
3245 3919 3.119531 GCATGGAATTTGATTGGTGACGA 60.120 43.478 0.00 0.00 0.00 4.20
3246 3920 3.181397 GCATGGAATTTGATTGGTGACG 58.819 45.455 0.00 0.00 0.00 4.35
3247 3921 3.196254 AGGCATGGAATTTGATTGGTGAC 59.804 43.478 0.00 0.00 0.00 3.67
3248 3922 3.443052 AGGCATGGAATTTGATTGGTGA 58.557 40.909 0.00 0.00 0.00 4.02
3249 3923 3.899052 AGGCATGGAATTTGATTGGTG 57.101 42.857 0.00 0.00 0.00 4.17
3250 3924 4.914177 AAAGGCATGGAATTTGATTGGT 57.086 36.364 0.00 0.00 0.00 3.67
3251 3925 7.868906 AATAAAAGGCATGGAATTTGATTGG 57.131 32.000 0.00 0.00 0.00 3.16
3261 3935 9.199645 TGAATCATCTAAAATAAAAGGCATGGA 57.800 29.630 0.00 0.00 0.00 3.41
3262 3936 9.991906 ATGAATCATCTAAAATAAAAGGCATGG 57.008 29.630 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.