Multiple sequence alignment - TraesCS7B01G375500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G375500 chr7B 100.000 2885 0 0 1 2885 640866449 640863565 0.000000e+00 5328.0
1 TraesCS7B01G375500 chr7B 99.416 514 2 1 2372 2885 640848153 640847641 0.000000e+00 931.0
2 TraesCS7B01G375500 chr7B 96.739 368 9 2 2008 2375 22512996 22512632 6.830000e-171 610.0
3 TraesCS7B01G375500 chr7B 78.142 183 36 1 299 481 640153803 640153981 2.350000e-21 113.0
4 TraesCS7B01G375500 chr7B 73.725 255 60 5 1298 1550 644299843 644300092 3.060000e-15 93.5
5 TraesCS7B01G375500 chr7B 77.439 164 29 5 1501 1657 639676950 639677112 1.100000e-14 91.6
6 TraesCS7B01G375500 chr7B 100.000 48 0 0 1967 2014 640848203 640848156 3.960000e-14 89.8
7 TraesCS7B01G375500 chr7B 94.340 53 3 0 1501 1553 639657589 639657641 6.630000e-12 82.4
8 TraesCS7B01G375500 chr7D 93.893 1490 60 17 551 2014 577511985 577510501 0.000000e+00 2218.0
9 TraesCS7B01G375500 chr7D 95.761 920 37 1 1095 2014 577538079 577537162 0.000000e+00 1482.0
10 TraesCS7B01G375500 chr7D 91.610 441 32 4 2446 2885 577509871 577509435 3.180000e-169 604.0
11 TraesCS7B01G375500 chr7D 91.383 441 33 4 2446 2885 577536591 577536155 1.480000e-167 599.0
12 TraesCS7B01G375500 chr7D 91.315 426 26 5 100 519 577512406 577511986 3.230000e-159 571.0
13 TraesCS7B01G375500 chr7D 92.877 365 24 2 2008 2372 583812641 583813003 1.970000e-146 529.0
14 TraesCS7B01G375500 chr7D 91.525 295 17 3 262 553 577538364 577538075 1.610000e-107 399.0
15 TraesCS7B01G375500 chr7D 97.872 94 2 0 1 94 577513489 577513396 2.300000e-36 163.0
16 TraesCS7B01G375500 chr7D 97.872 94 2 0 1 94 577539465 577539372 2.300000e-36 163.0
17 TraesCS7B01G375500 chr7D 90.361 83 5 3 2372 2454 577510498 577510419 3.930000e-19 106.0
18 TraesCS7B01G375500 chr7D 90.361 83 5 3 2372 2454 577537159 577537080 3.930000e-19 106.0
19 TraesCS7B01G375500 chr7A 85.680 1243 96 34 423 1627 669640233 669639035 0.000000e+00 1234.0
20 TraesCS7B01G375500 chr7A 91.509 318 23 3 101 415 669653238 669652922 4.410000e-118 435.0
21 TraesCS7B01G375500 chr7A 85.057 174 22 2 308 481 669197346 669197515 1.060000e-39 174.0
22 TraesCS7B01G375500 chr7A 96.739 92 3 0 4 95 669697597 669697506 1.380000e-33 154.0
23 TraesCS7B01G375500 chr7A 78.395 162 29 5 1499 1657 668990823 668990981 1.830000e-17 100.0
24 TraesCS7B01G375500 chr7A 84.000 75 10 2 1607 1680 27462899 27462972 1.430000e-08 71.3
25 TraesCS7B01G375500 chr5A 99.183 367 3 0 2008 2374 584556533 584556167 0.000000e+00 662.0
26 TraesCS7B01G375500 chr2B 98.365 367 6 0 2008 2374 71875179 71875545 0.000000e+00 645.0
27 TraesCS7B01G375500 chr2B 82.659 173 28 2 2536 2707 713506613 713506442 4.980000e-33 152.0
28 TraesCS7B01G375500 chr3D 93.973 365 21 1 2008 2372 499508570 499508207 4.200000e-153 551.0
29 TraesCS7B01G375500 chr3D 78.445 283 52 8 219 501 27690179 27690452 2.950000e-40 176.0
30 TraesCS7B01G375500 chr2D 93.151 365 24 1 2008 2372 151387045 151387408 4.230000e-148 534.0
31 TraesCS7B01G375500 chr2D 96.393 305 11 0 2068 2372 121959147 121959451 1.190000e-138 503.0
32 TraesCS7B01G375500 chr4D 96.066 305 12 0 2068 2372 435726766 435726462 5.550000e-137 497.0
33 TraesCS7B01G375500 chr5D 92.537 335 24 1 2005 2339 324195639 324195972 2.010000e-131 479.0
34 TraesCS7B01G375500 chr3A 80.597 134 23 3 2553 2684 24462245 24462377 1.830000e-17 100.0
35 TraesCS7B01G375500 chr4B 100.000 46 0 0 2008 2053 553507393 553507348 5.120000e-13 86.1
36 TraesCS7B01G375500 chrUn 84.000 75 10 2 1607 1680 50429502 50429575 1.430000e-08 71.3
37 TraesCS7B01G375500 chr4A 84.000 75 10 2 1607 1680 703442343 703442416 1.430000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G375500 chr7B 640863565 640866449 2884 True 5328.0 5328 100.0000 1 2885 1 chr7B.!!$R2 2884
1 TraesCS7B01G375500 chr7B 640847641 640848203 562 True 510.4 931 99.7080 1967 2885 2 chr7B.!!$R3 918
2 TraesCS7B01G375500 chr7D 577509435 577513489 4054 True 732.4 2218 93.0102 1 2885 5 chr7D.!!$R1 2884
3 TraesCS7B01G375500 chr7D 577536155 577539465 3310 True 549.8 1482 93.3804 1 2885 5 chr7D.!!$R2 2884
4 TraesCS7B01G375500 chr7A 669639035 669640233 1198 True 1234.0 1234 85.6800 423 1627 1 chr7A.!!$R1 1204

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 1463 0.251608 TGTCCTCGATGACCTGGTCA 60.252 55.0 30.08 30.08 46.9 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2286 3341 0.035056 ATACACTGCTGGACCAAGCC 60.035 55.0 11.8 0.0 42.83 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 9.550406 CCGTAATATTATCTCCTTTACAACCAA 57.450 33.333 0.00 0.00 0.00 3.67
116 1101 6.438259 AAAAAGAGAGACTGCATCATGATG 57.562 37.500 28.04 28.04 41.60 3.07
117 1102 5.354842 AAAGAGAGACTGCATCATGATGA 57.645 39.130 34.65 19.93 41.20 2.92
131 1117 2.124570 ATGACGAGGCCATGGCAC 60.125 61.111 36.56 26.92 44.11 5.01
146 1132 1.571460 GCACTGTTGCGTCAAGAGG 59.429 57.895 16.74 9.58 38.76 3.69
176 1162 4.094590 ACGAAGTTAGTCGGACTGATACAG 59.905 45.833 20.58 10.17 45.40 2.74
185 1171 2.414957 CGGACTGATACAGCGTGTAACA 60.415 50.000 0.00 7.50 36.31 2.41
189 1175 4.816392 ACTGATACAGCGTGTAACATTGA 58.184 39.130 7.97 0.00 35.55 2.57
198 1184 3.426159 GCGTGTAACATTGAATGGACAGG 60.426 47.826 20.97 20.97 38.26 4.00
204 1190 0.620556 ATTGAATGGACAGGGCTCGT 59.379 50.000 0.00 0.00 0.00 4.18
206 1192 1.296715 GAATGGACAGGGCTCGTGT 59.703 57.895 0.97 0.97 35.09 4.49
210 1196 2.357517 GACAGGGCTCGTGTGTGG 60.358 66.667 5.45 0.00 32.46 4.17
236 1222 2.436646 GGGACCACCATGAGCGTG 60.437 66.667 0.00 0.00 39.85 5.34
237 1223 3.127533 GGACCACCATGAGCGTGC 61.128 66.667 0.00 0.00 35.97 5.34
240 1226 3.129502 CCACCATGAGCGTGCTGG 61.130 66.667 0.00 0.00 36.09 4.85
241 1227 3.807538 CACCATGAGCGTGCTGGC 61.808 66.667 0.00 0.00 33.12 4.85
420 1410 2.501128 GAGGCTGCGGCATCTGTA 59.499 61.111 24.33 0.00 44.64 2.74
421 1411 1.884926 GAGGCTGCGGCATCTGTAC 60.885 63.158 24.33 2.01 44.64 2.90
467 1457 1.866063 GCGAAGATGTCCTCGATGACC 60.866 57.143 16.81 4.07 34.25 4.02
473 1463 0.251608 TGTCCTCGATGACCTGGTCA 60.252 55.000 30.08 30.08 46.90 4.02
598 1610 1.062880 GTGCTTCGTTTCCGTGTTGAA 59.937 47.619 0.00 0.00 35.01 2.69
610 1622 2.605818 CCGTGTTGAACCCGTACATATG 59.394 50.000 0.00 0.00 0.00 1.78
611 1623 3.513662 CGTGTTGAACCCGTACATATGA 58.486 45.455 10.38 0.00 0.00 2.15
612 1624 3.550275 CGTGTTGAACCCGTACATATGAG 59.450 47.826 10.38 0.24 0.00 2.90
614 1626 5.653507 GTGTTGAACCCGTACATATGAGTA 58.346 41.667 10.38 0.00 0.00 2.59
615 1627 5.517770 GTGTTGAACCCGTACATATGAGTAC 59.482 44.000 10.38 1.52 40.68 2.73
616 1628 5.185442 TGTTGAACCCGTACATATGAGTACA 59.815 40.000 10.38 0.00 43.49 2.90
643 1662 1.795768 TCGTACTCGTACACGGTCTT 58.204 50.000 7.86 0.00 38.66 3.01
652 1698 1.267806 GTACACGGTCTTGTCCTCGAA 59.732 52.381 0.00 0.00 0.00 3.71
663 1709 7.516785 CGGTCTTGTCCTCGAAATAAATACATG 60.517 40.741 0.00 0.00 0.00 3.21
664 1710 7.126398 GTCTTGTCCTCGAAATAAATACATGC 58.874 38.462 0.00 0.00 0.00 4.06
665 1711 6.821160 TCTTGTCCTCGAAATAAATACATGCA 59.179 34.615 0.00 0.00 0.00 3.96
666 1712 6.358118 TGTCCTCGAAATAAATACATGCAC 57.642 37.500 0.00 0.00 0.00 4.57
667 1713 5.006261 TGTCCTCGAAATAAATACATGCACG 59.994 40.000 0.00 0.00 0.00 5.34
668 1714 5.006358 GTCCTCGAAATAAATACATGCACGT 59.994 40.000 0.00 0.00 0.00 4.49
669 1715 6.199531 GTCCTCGAAATAAATACATGCACGTA 59.800 38.462 0.00 0.00 0.00 3.57
670 1716 6.419710 TCCTCGAAATAAATACATGCACGTAG 59.580 38.462 0.00 0.00 0.00 3.51
671 1717 6.346598 CCTCGAAATAAATACATGCACGTAGG 60.347 42.308 0.00 0.00 0.00 3.18
672 1718 5.464057 TCGAAATAAATACATGCACGTAGGG 59.536 40.000 0.00 0.00 0.00 3.53
673 1719 5.432885 AAATAAATACATGCACGTAGGGC 57.567 39.130 0.00 0.00 0.00 5.19
674 1720 2.411628 AAATACATGCACGTAGGGCA 57.588 45.000 0.00 0.00 46.66 5.36
675 1721 1.663695 AATACATGCACGTAGGGCAC 58.336 50.000 0.00 0.00 45.23 5.01
700 1746 2.034001 CACGGACGTGTGTTTTCTCTTC 60.034 50.000 16.06 0.00 40.91 2.87
701 1747 1.525619 CGGACGTGTGTTTTCTCTTCC 59.474 52.381 0.00 0.00 0.00 3.46
704 1750 0.865769 CGTGTGTTTTCTCTTCCCGG 59.134 55.000 0.00 0.00 0.00 5.73
713 1759 1.335145 TCTCTTCCCGGTCGAAAGTT 58.665 50.000 0.00 0.00 0.00 2.66
717 1763 0.680618 TTCCCGGTCGAAAGTTGCTA 59.319 50.000 0.00 0.00 0.00 3.49
728 1778 2.933495 AAGTTGCTATCTACGCACGA 57.067 45.000 0.00 0.00 37.07 4.35
770 1820 2.890311 TGTTTCCACAAGCCGAATCAAT 59.110 40.909 0.00 0.00 0.00 2.57
1275 2325 4.394712 CTTCGGGAACAGCGCCCT 62.395 66.667 2.29 0.00 43.72 5.19
1333 2383 4.954118 ACCTGGACCGGCACCTCA 62.954 66.667 17.27 1.95 0.00 3.86
1387 2437 4.394078 CGTTCGTCGTCTCCGGCA 62.394 66.667 0.00 0.00 39.06 5.69
1396 2446 1.572941 GTCTCCGGCAAAACGTTCC 59.427 57.895 0.00 0.00 0.00 3.62
1545 2600 2.837532 TGCTGCACTTCATCTACACA 57.162 45.000 0.00 0.00 0.00 3.72
1593 2648 2.710902 CGATGAGGAGTCGGTGGCA 61.711 63.158 0.00 0.00 35.55 4.92
1603 2658 0.036765 GTCGGTGGCATTGACCTGTA 60.037 55.000 10.04 0.00 0.00 2.74
1653 2708 0.251354 TGGACAGGCTCAAGCTGATC 59.749 55.000 1.46 0.00 41.70 2.92
1819 2874 0.537653 GACAGAGGGCTACAAGGACC 59.462 60.000 0.00 0.00 33.74 4.46
1878 2933 0.603975 AGTCTGCAAGCGGGAGAAAC 60.604 55.000 4.35 0.00 46.27 2.78
1943 2998 9.877178 AAGTTAAGTTGTATCTTGTCCTATCAG 57.123 33.333 0.00 0.00 0.00 2.90
2014 3069 7.772332 AAGTTGAGACTAGTTTTGTAGTGTG 57.228 36.000 0.00 0.00 34.21 3.82
2015 3070 6.875076 AGTTGAGACTAGTTTTGTAGTGTGT 58.125 36.000 0.00 0.00 33.18 3.72
2016 3071 8.004087 AGTTGAGACTAGTTTTGTAGTGTGTA 57.996 34.615 0.00 0.00 33.18 2.90
2017 3072 8.136165 AGTTGAGACTAGTTTTGTAGTGTGTAG 58.864 37.037 0.00 0.00 33.18 2.74
2018 3073 7.812690 TGAGACTAGTTTTGTAGTGTGTAGA 57.187 36.000 0.00 0.00 33.18 2.59
2019 3074 7.872881 TGAGACTAGTTTTGTAGTGTGTAGAG 58.127 38.462 0.00 0.00 33.18 2.43
2020 3075 7.040617 TGAGACTAGTTTTGTAGTGTGTAGAGG 60.041 40.741 0.00 0.00 33.18 3.69
2021 3076 5.780984 ACTAGTTTTGTAGTGTGTAGAGGC 58.219 41.667 0.00 0.00 31.75 4.70
2022 3077 4.004196 AGTTTTGTAGTGTGTAGAGGCC 57.996 45.455 0.00 0.00 0.00 5.19
2023 3078 3.389983 AGTTTTGTAGTGTGTAGAGGCCA 59.610 43.478 5.01 0.00 0.00 5.36
2024 3079 3.396260 TTTGTAGTGTGTAGAGGCCAC 57.604 47.619 5.01 0.00 0.00 5.01
2025 3080 2.003937 TGTAGTGTGTAGAGGCCACA 57.996 50.000 5.01 0.00 40.35 4.17
2029 3084 1.371183 TGTGTAGAGGCCACACTGC 59.629 57.895 21.57 13.87 45.26 4.40
2037 3092 4.625800 GCCACACTGCCTCTAAGG 57.374 61.111 0.00 0.00 38.80 2.69
2038 3093 1.679898 GCCACACTGCCTCTAAGGT 59.320 57.895 0.00 0.00 37.80 3.50
2039 3094 0.674895 GCCACACTGCCTCTAAGGTG 60.675 60.000 0.00 0.00 37.80 4.00
2040 3095 0.036010 CCACACTGCCTCTAAGGTGG 60.036 60.000 0.00 0.00 37.80 4.61
2041 3096 0.036010 CACACTGCCTCTAAGGTGGG 60.036 60.000 0.00 0.00 37.80 4.61
2042 3097 1.078143 CACTGCCTCTAAGGTGGGC 60.078 63.158 0.00 0.00 45.45 5.36
2043 3098 2.301738 ACTGCCTCTAAGGTGGGCC 61.302 63.158 0.00 0.00 44.71 5.80
2044 3099 3.015145 TGCCTCTAAGGTGGGCCC 61.015 66.667 17.59 17.59 44.71 5.80
2046 3101 2.747443 GCCTCTAAGGTGGGCCCTC 61.747 68.421 25.70 20.64 45.47 4.30
2047 3102 2.073101 CCTCTAAGGTGGGCCCTCC 61.073 68.421 32.17 32.17 45.47 4.30
2048 3103 1.306997 CTCTAAGGTGGGCCCTCCA 60.307 63.158 38.06 21.66 45.47 3.86
2059 3114 4.748798 CCCTCCACCCCTGCCTCT 62.749 72.222 0.00 0.00 0.00 3.69
2060 3115 2.368594 CCTCCACCCCTGCCTCTA 59.631 66.667 0.00 0.00 0.00 2.43
2061 3116 1.306997 CCTCCACCCCTGCCTCTAA 60.307 63.158 0.00 0.00 0.00 2.10
2062 3117 1.341156 CCTCCACCCCTGCCTCTAAG 61.341 65.000 0.00 0.00 0.00 2.18
2063 3118 0.618968 CTCCACCCCTGCCTCTAAGT 60.619 60.000 0.00 0.00 0.00 2.24
2064 3119 0.714180 TCCACCCCTGCCTCTAAGTA 59.286 55.000 0.00 0.00 0.00 2.24
2065 3120 1.294068 TCCACCCCTGCCTCTAAGTAT 59.706 52.381 0.00 0.00 0.00 2.12
2066 3121 2.520980 TCCACCCCTGCCTCTAAGTATA 59.479 50.000 0.00 0.00 0.00 1.47
2067 3122 2.900546 CCACCCCTGCCTCTAAGTATAG 59.099 54.545 0.00 0.00 0.00 1.31
2068 3123 3.577919 CACCCCTGCCTCTAAGTATAGT 58.422 50.000 0.00 0.00 0.00 2.12
2069 3124 3.967987 CACCCCTGCCTCTAAGTATAGTT 59.032 47.826 0.00 0.00 0.00 2.24
2070 3125 5.145564 CACCCCTGCCTCTAAGTATAGTTA 58.854 45.833 0.18 0.18 0.00 2.24
2071 3126 5.601313 CACCCCTGCCTCTAAGTATAGTTAA 59.399 44.000 1.77 0.00 0.00 2.01
2072 3127 6.099269 CACCCCTGCCTCTAAGTATAGTTAAA 59.901 42.308 1.77 0.00 0.00 1.52
2073 3128 6.675303 ACCCCTGCCTCTAAGTATAGTTAAAA 59.325 38.462 1.77 0.00 0.00 1.52
2074 3129 7.147532 ACCCCTGCCTCTAAGTATAGTTAAAAG 60.148 40.741 1.77 2.94 0.00 2.27
2075 3130 7.070821 CCCCTGCCTCTAAGTATAGTTAAAAGA 59.929 40.741 1.77 0.00 0.00 2.52
2076 3131 8.483758 CCCTGCCTCTAAGTATAGTTAAAAGAA 58.516 37.037 1.77 0.00 0.00 2.52
2077 3132 9.886132 CCTGCCTCTAAGTATAGTTAAAAGAAA 57.114 33.333 1.77 0.00 0.00 2.52
2079 3134 9.362539 TGCCTCTAAGTATAGTTAAAAGAAACG 57.637 33.333 1.77 0.00 34.46 3.60
2080 3135 8.326713 GCCTCTAAGTATAGTTAAAAGAAACGC 58.673 37.037 1.77 0.00 34.46 4.84
2081 3136 9.362539 CCTCTAAGTATAGTTAAAAGAAACGCA 57.637 33.333 1.77 0.00 34.46 5.24
2084 3139 9.456797 CTAAGTATAGTTAAAAGAAACGCAACG 57.543 33.333 1.77 0.00 34.46 4.10
2085 3140 7.412137 AGTATAGTTAAAAGAAACGCAACGT 57.588 32.000 0.00 0.00 43.97 3.99
2086 3141 8.519492 AGTATAGTTAAAAGAAACGCAACGTA 57.481 30.769 0.00 0.00 39.99 3.57
2087 3142 9.143631 AGTATAGTTAAAAGAAACGCAACGTAT 57.856 29.630 0.00 0.00 39.99 3.06
2090 3145 6.301861 AGTTAAAAGAAACGCAACGTATAGC 58.698 36.000 0.00 0.00 39.99 2.97
2091 3146 6.146673 AGTTAAAAGAAACGCAACGTATAGCT 59.853 34.615 0.00 0.00 39.99 3.32
2092 3147 7.329226 AGTTAAAAGAAACGCAACGTATAGCTA 59.671 33.333 0.00 0.00 39.99 3.32
2093 3148 5.446031 AAAGAAACGCAACGTATAGCTAC 57.554 39.130 0.00 0.00 39.99 3.58
2101 3156 3.489813 CGTATAGCTACGGCATGCA 57.510 52.632 21.36 0.00 45.51 3.96
2102 3157 1.340658 CGTATAGCTACGGCATGCAG 58.659 55.000 21.36 18.97 45.51 4.41
2103 3158 1.071605 GTATAGCTACGGCATGCAGC 58.928 55.000 21.36 19.57 41.70 5.25
2112 3167 4.972875 GCATGCAGCCTCTAAGGT 57.027 55.556 14.21 0.00 37.80 3.50
2113 3168 2.401967 GCATGCAGCCTCTAAGGTG 58.598 57.895 14.21 0.00 37.80 4.00
2114 3169 1.099879 GCATGCAGCCTCTAAGGTGG 61.100 60.000 14.21 0.00 37.80 4.61
2115 3170 0.543277 CATGCAGCCTCTAAGGTGGA 59.457 55.000 0.00 0.00 37.80 4.02
2116 3171 0.835941 ATGCAGCCTCTAAGGTGGAG 59.164 55.000 0.00 0.00 37.80 3.86
2117 3172 1.153269 GCAGCCTCTAAGGTGGAGC 60.153 63.158 0.00 0.00 37.80 4.70
2118 3173 1.621672 GCAGCCTCTAAGGTGGAGCT 61.622 60.000 0.00 0.00 37.80 4.09
2119 3174 0.463620 CAGCCTCTAAGGTGGAGCTC 59.536 60.000 4.71 4.71 37.80 4.09
2120 3175 0.041833 AGCCTCTAAGGTGGAGCTCA 59.958 55.000 17.19 0.00 37.80 4.26
2121 3176 1.127343 GCCTCTAAGGTGGAGCTCAT 58.873 55.000 17.19 0.00 37.80 2.90
2122 3177 2.091055 AGCCTCTAAGGTGGAGCTCATA 60.091 50.000 17.19 0.19 37.80 2.15
2123 3178 2.903135 GCCTCTAAGGTGGAGCTCATAT 59.097 50.000 17.19 0.00 37.80 1.78
2124 3179 3.306641 GCCTCTAAGGTGGAGCTCATATG 60.307 52.174 17.19 0.00 37.80 1.78
2125 3180 3.900601 CCTCTAAGGTGGAGCTCATATGT 59.099 47.826 17.19 0.00 0.00 2.29
2126 3181 5.080337 CCTCTAAGGTGGAGCTCATATGTA 58.920 45.833 17.19 0.92 0.00 2.29
2127 3182 5.540337 CCTCTAAGGTGGAGCTCATATGTAA 59.460 44.000 17.19 0.00 0.00 2.41
2128 3183 6.406692 TCTAAGGTGGAGCTCATATGTAAC 57.593 41.667 17.19 1.69 0.00 2.50
2129 3184 5.897250 TCTAAGGTGGAGCTCATATGTAACA 59.103 40.000 17.19 0.00 0.00 2.41
2130 3185 5.636903 AAGGTGGAGCTCATATGTAACAT 57.363 39.130 17.19 0.00 0.00 2.71
2131 3186 6.747414 AAGGTGGAGCTCATATGTAACATA 57.253 37.500 17.19 0.00 0.00 2.29
2132 3187 6.747414 AGGTGGAGCTCATATGTAACATAA 57.253 37.500 17.19 0.00 0.00 1.90
2133 3188 7.136822 AGGTGGAGCTCATATGTAACATAAA 57.863 36.000 17.19 0.00 0.00 1.40
2134 3189 7.573710 AGGTGGAGCTCATATGTAACATAAAA 58.426 34.615 17.19 0.00 0.00 1.52
2135 3190 8.220559 AGGTGGAGCTCATATGTAACATAAAAT 58.779 33.333 17.19 0.00 0.00 1.82
2136 3191 9.502091 GGTGGAGCTCATATGTAACATAAAATA 57.498 33.333 17.19 0.00 0.00 1.40
2159 3214 9.829507 AATATTTACTCTCTTCAACCATCTCAG 57.170 33.333 0.00 0.00 0.00 3.35
2160 3215 5.667539 TTACTCTCTTCAACCATCTCAGG 57.332 43.478 0.00 0.00 0.00 3.86
2161 3216 2.235898 ACTCTCTTCAACCATCTCAGGC 59.764 50.000 0.00 0.00 0.00 4.85
2162 3217 1.556911 TCTCTTCAACCATCTCAGGCC 59.443 52.381 0.00 0.00 0.00 5.19
2163 3218 1.280133 CTCTTCAACCATCTCAGGCCA 59.720 52.381 5.01 0.00 0.00 5.36
2164 3219 1.704628 TCTTCAACCATCTCAGGCCAA 59.295 47.619 5.01 0.00 0.00 4.52
2165 3220 2.108075 TCTTCAACCATCTCAGGCCAAA 59.892 45.455 5.01 0.00 0.00 3.28
2166 3221 2.905415 TCAACCATCTCAGGCCAAAT 57.095 45.000 5.01 0.00 0.00 2.32
2167 3222 2.726821 TCAACCATCTCAGGCCAAATC 58.273 47.619 5.01 0.00 0.00 2.17
2168 3223 2.309755 TCAACCATCTCAGGCCAAATCT 59.690 45.455 5.01 0.00 0.00 2.40
2169 3224 2.426024 CAACCATCTCAGGCCAAATCTG 59.574 50.000 5.01 0.00 0.00 2.90
2170 3225 1.918262 ACCATCTCAGGCCAAATCTGA 59.082 47.619 5.01 0.00 38.75 3.27
2171 3226 2.309755 ACCATCTCAGGCCAAATCTGAA 59.690 45.455 5.01 0.00 40.29 3.02
2172 3227 2.686915 CCATCTCAGGCCAAATCTGAAC 59.313 50.000 5.01 0.00 40.29 3.18
2173 3228 3.349927 CATCTCAGGCCAAATCTGAACA 58.650 45.455 5.01 0.00 40.29 3.18
2174 3229 3.507162 TCTCAGGCCAAATCTGAACAA 57.493 42.857 5.01 0.00 40.29 2.83
2175 3230 3.831323 TCTCAGGCCAAATCTGAACAAA 58.169 40.909 5.01 0.00 40.29 2.83
2176 3231 4.410099 TCTCAGGCCAAATCTGAACAAAT 58.590 39.130 5.01 0.00 40.29 2.32
2177 3232 5.569355 TCTCAGGCCAAATCTGAACAAATA 58.431 37.500 5.01 0.00 40.29 1.40
2178 3233 6.189859 TCTCAGGCCAAATCTGAACAAATAT 58.810 36.000 5.01 0.00 40.29 1.28
2179 3234 7.345691 TCTCAGGCCAAATCTGAACAAATATA 58.654 34.615 5.01 0.00 40.29 0.86
2180 3235 8.000709 TCTCAGGCCAAATCTGAACAAATATAT 58.999 33.333 5.01 0.00 40.29 0.86
2181 3236 7.944061 TCAGGCCAAATCTGAACAAATATATG 58.056 34.615 5.01 0.00 38.20 1.78
2182 3237 7.014518 TCAGGCCAAATCTGAACAAATATATGG 59.985 37.037 5.01 0.00 38.20 2.74
2183 3238 6.268387 AGGCCAAATCTGAACAAATATATGGG 59.732 38.462 5.01 0.00 0.00 4.00
2184 3239 5.928264 GCCAAATCTGAACAAATATATGGGC 59.072 40.000 0.00 0.00 0.00 5.36
2185 3240 6.239402 GCCAAATCTGAACAAATATATGGGCT 60.239 38.462 0.00 0.00 0.00 5.19
2186 3241 7.039784 GCCAAATCTGAACAAATATATGGGCTA 60.040 37.037 0.00 0.00 0.00 3.93
2187 3242 8.299570 CCAAATCTGAACAAATATATGGGCTAC 58.700 37.037 0.00 0.00 0.00 3.58
2188 3243 8.849168 CAAATCTGAACAAATATATGGGCTACA 58.151 33.333 0.00 0.00 0.00 2.74
2189 3244 8.627208 AATCTGAACAAATATATGGGCTACAG 57.373 34.615 0.00 0.00 0.00 2.74
2190 3245 6.533730 TCTGAACAAATATATGGGCTACAGG 58.466 40.000 0.00 0.00 0.00 4.00
2191 3246 5.630121 TGAACAAATATATGGGCTACAGGG 58.370 41.667 0.00 0.00 0.00 4.45
2192 3247 5.371176 TGAACAAATATATGGGCTACAGGGA 59.629 40.000 0.00 0.00 0.00 4.20
2193 3248 6.045459 TGAACAAATATATGGGCTACAGGGAT 59.955 38.462 0.00 0.00 0.00 3.85
2194 3249 6.468972 ACAAATATATGGGCTACAGGGATT 57.531 37.500 0.00 0.00 0.00 3.01
2195 3250 6.248433 ACAAATATATGGGCTACAGGGATTG 58.752 40.000 0.00 0.00 0.00 2.67
2196 3251 6.183361 ACAAATATATGGGCTACAGGGATTGT 60.183 38.462 0.00 0.00 43.96 2.71
2197 3252 7.018149 ACAAATATATGGGCTACAGGGATTGTA 59.982 37.037 0.00 0.00 41.29 2.41
2198 3253 7.582909 AATATATGGGCTACAGGGATTGTAA 57.417 36.000 0.00 0.00 41.57 2.41
2199 3254 3.864789 ATGGGCTACAGGGATTGTAAG 57.135 47.619 0.00 0.00 41.57 2.34
2200 3255 2.557869 TGGGCTACAGGGATTGTAAGT 58.442 47.619 0.00 0.00 41.57 2.24
2201 3256 3.726790 TGGGCTACAGGGATTGTAAGTA 58.273 45.455 0.00 0.00 41.57 2.24
2202 3257 3.709653 TGGGCTACAGGGATTGTAAGTAG 59.290 47.826 0.00 0.00 41.57 2.57
2203 3258 3.071167 GGGCTACAGGGATTGTAAGTAGG 59.929 52.174 0.00 0.00 41.57 3.18
2204 3259 3.071167 GGCTACAGGGATTGTAAGTAGGG 59.929 52.174 0.00 0.00 41.57 3.53
2205 3260 3.494573 GCTACAGGGATTGTAAGTAGGGC 60.495 52.174 0.00 0.00 41.57 5.19
2206 3261 1.844497 ACAGGGATTGTAAGTAGGGCC 59.156 52.381 0.00 0.00 38.56 5.80
2207 3262 1.843851 CAGGGATTGTAAGTAGGGCCA 59.156 52.381 6.18 0.00 0.00 5.36
2208 3263 2.127708 AGGGATTGTAAGTAGGGCCAG 58.872 52.381 6.18 0.00 0.00 4.85
2209 3264 1.143073 GGGATTGTAAGTAGGGCCAGG 59.857 57.143 6.18 0.00 0.00 4.45
2210 3265 1.143073 GGATTGTAAGTAGGGCCAGGG 59.857 57.143 6.18 0.00 0.00 4.45
2211 3266 2.124411 GATTGTAAGTAGGGCCAGGGA 58.876 52.381 6.18 0.00 0.00 4.20
2212 3267 2.047769 TTGTAAGTAGGGCCAGGGAA 57.952 50.000 6.18 0.00 0.00 3.97
2213 3268 2.280308 TGTAAGTAGGGCCAGGGAAT 57.720 50.000 6.18 0.00 0.00 3.01
2214 3269 2.568979 TGTAAGTAGGGCCAGGGAATT 58.431 47.619 6.18 0.00 0.00 2.17
2215 3270 3.738434 TGTAAGTAGGGCCAGGGAATTA 58.262 45.455 6.18 0.00 0.00 1.40
2216 3271 4.312487 TGTAAGTAGGGCCAGGGAATTAT 58.688 43.478 6.18 0.00 0.00 1.28
2217 3272 4.729881 TGTAAGTAGGGCCAGGGAATTATT 59.270 41.667 6.18 0.00 0.00 1.40
2218 3273 4.899898 AAGTAGGGCCAGGGAATTATTT 57.100 40.909 6.18 0.00 0.00 1.40
2219 3274 4.899898 AGTAGGGCCAGGGAATTATTTT 57.100 40.909 6.18 0.00 0.00 1.82
2220 3275 6.349897 AAGTAGGGCCAGGGAATTATTTTA 57.650 37.500 6.18 0.00 0.00 1.52
2221 3276 5.953571 AGTAGGGCCAGGGAATTATTTTAG 58.046 41.667 6.18 0.00 0.00 1.85
2222 3277 4.899898 AGGGCCAGGGAATTATTTTAGT 57.100 40.909 6.18 0.00 0.00 2.24
2223 3278 4.546674 AGGGCCAGGGAATTATTTTAGTG 58.453 43.478 6.18 0.00 0.00 2.74
2224 3279 3.069586 GGGCCAGGGAATTATTTTAGTGC 59.930 47.826 4.39 0.00 0.00 4.40
2225 3280 3.704061 GGCCAGGGAATTATTTTAGTGCA 59.296 43.478 0.00 0.00 0.00 4.57
2226 3281 4.161377 GGCCAGGGAATTATTTTAGTGCAA 59.839 41.667 0.00 0.00 0.00 4.08
2227 3282 5.337975 GGCCAGGGAATTATTTTAGTGCAAA 60.338 40.000 0.00 0.00 0.00 3.68
2228 3283 5.812127 GCCAGGGAATTATTTTAGTGCAAAG 59.188 40.000 0.00 0.00 0.00 2.77
2229 3284 6.350949 GCCAGGGAATTATTTTAGTGCAAAGA 60.351 38.462 0.00 0.00 0.00 2.52
2230 3285 7.610865 CCAGGGAATTATTTTAGTGCAAAGAA 58.389 34.615 0.00 0.00 0.00 2.52
2231 3286 8.093927 CCAGGGAATTATTTTAGTGCAAAGAAA 58.906 33.333 0.00 0.00 0.00 2.52
2232 3287 9.657419 CAGGGAATTATTTTAGTGCAAAGAAAT 57.343 29.630 0.00 0.00 0.00 2.17
2233 3288 9.657419 AGGGAATTATTTTAGTGCAAAGAAATG 57.343 29.630 10.84 0.00 0.00 2.32
2234 3289 8.882736 GGGAATTATTTTAGTGCAAAGAAATGG 58.117 33.333 10.84 0.00 0.00 3.16
2235 3290 8.390354 GGAATTATTTTAGTGCAAAGAAATGGC 58.610 33.333 10.84 0.00 0.00 4.40
2236 3291 9.154847 GAATTATTTTAGTGCAAAGAAATGGCT 57.845 29.630 10.84 0.00 0.00 4.75
2237 3292 9.506018 AATTATTTTAGTGCAAAGAAATGGCTT 57.494 25.926 10.84 0.00 0.00 4.35
2239 3294 9.638239 TTATTTTAGTGCAAAGAAATGGCTTAG 57.362 29.630 10.84 0.00 0.00 2.18
2240 3295 6.892658 TTTAGTGCAAAGAAATGGCTTAGA 57.107 33.333 0.00 0.00 0.00 2.10
2241 3296 6.500684 TTAGTGCAAAGAAATGGCTTAGAG 57.499 37.500 0.00 0.00 0.00 2.43
2242 3297 3.760684 AGTGCAAAGAAATGGCTTAGAGG 59.239 43.478 0.00 0.00 0.00 3.69
2243 3298 2.493278 TGCAAAGAAATGGCTTAGAGGC 59.507 45.455 0.00 0.00 41.77 4.70
2256 3311 4.809070 GAGGCAGCCTCTTGTGTT 57.191 55.556 31.54 0.00 46.41 3.32
2257 3312 3.935993 GAGGCAGCCTCTTGTGTTA 57.064 52.632 31.54 0.00 46.41 2.41
2258 3313 1.731720 GAGGCAGCCTCTTGTGTTAG 58.268 55.000 31.54 0.00 46.41 2.34
2259 3314 1.276421 GAGGCAGCCTCTTGTGTTAGA 59.724 52.381 31.54 0.00 46.41 2.10
2260 3315 1.277557 AGGCAGCCTCTTGTGTTAGAG 59.722 52.381 8.70 0.00 41.10 2.43
2267 3322 1.929836 CTCTTGTGTTAGAGGCGATGC 59.070 52.381 0.00 0.00 38.38 3.91
2268 3323 1.550524 TCTTGTGTTAGAGGCGATGCT 59.449 47.619 0.00 0.00 0.00 3.79
2269 3324 2.758423 TCTTGTGTTAGAGGCGATGCTA 59.242 45.455 0.00 0.00 0.00 3.49
2270 3325 2.871182 TGTGTTAGAGGCGATGCTAG 57.129 50.000 0.00 0.00 0.00 3.42
2271 3326 2.375146 TGTGTTAGAGGCGATGCTAGA 58.625 47.619 0.00 0.00 0.00 2.43
2272 3327 2.359214 TGTGTTAGAGGCGATGCTAGAG 59.641 50.000 0.00 0.00 0.00 2.43
2273 3328 2.619177 GTGTTAGAGGCGATGCTAGAGA 59.381 50.000 0.00 0.00 0.00 3.10
2274 3329 3.066900 GTGTTAGAGGCGATGCTAGAGAA 59.933 47.826 0.00 0.00 0.00 2.87
2275 3330 3.891977 TGTTAGAGGCGATGCTAGAGAAT 59.108 43.478 0.00 0.00 0.00 2.40
2276 3331 4.342378 TGTTAGAGGCGATGCTAGAGAATT 59.658 41.667 0.00 0.00 0.00 2.17
2277 3332 5.163405 TGTTAGAGGCGATGCTAGAGAATTT 60.163 40.000 0.00 0.00 0.00 1.82
2278 3333 4.414337 AGAGGCGATGCTAGAGAATTTT 57.586 40.909 0.00 0.00 0.00 1.82
2279 3334 4.376146 AGAGGCGATGCTAGAGAATTTTC 58.624 43.478 0.00 0.00 0.00 2.29
2280 3335 3.471680 AGGCGATGCTAGAGAATTTTCC 58.528 45.455 0.00 0.00 0.00 3.13
2281 3336 2.550180 GGCGATGCTAGAGAATTTTCCC 59.450 50.000 0.00 0.00 0.00 3.97
2282 3337 3.206150 GCGATGCTAGAGAATTTTCCCA 58.794 45.455 0.00 0.00 0.00 4.37
2283 3338 3.627577 GCGATGCTAGAGAATTTTCCCAA 59.372 43.478 0.00 0.00 0.00 4.12
2284 3339 4.260948 GCGATGCTAGAGAATTTTCCCAAG 60.261 45.833 0.00 0.00 0.00 3.61
2285 3340 5.118990 CGATGCTAGAGAATTTTCCCAAGA 58.881 41.667 0.00 0.00 0.00 3.02
2286 3341 5.236047 CGATGCTAGAGAATTTTCCCAAGAG 59.764 44.000 0.00 0.00 0.00 2.85
2287 3342 4.848357 TGCTAGAGAATTTTCCCAAGAGG 58.152 43.478 0.00 0.00 0.00 3.69
2288 3343 3.629855 GCTAGAGAATTTTCCCAAGAGGC 59.370 47.826 0.00 0.00 34.51 4.70
2289 3344 4.627498 GCTAGAGAATTTTCCCAAGAGGCT 60.627 45.833 0.00 0.00 34.51 4.58
2290 3345 4.394797 AGAGAATTTTCCCAAGAGGCTT 57.605 40.909 0.00 0.00 34.51 4.35
2291 3346 4.085009 AGAGAATTTTCCCAAGAGGCTTG 58.915 43.478 0.00 0.00 34.51 4.01
2292 3347 3.168292 AGAATTTTCCCAAGAGGCTTGG 58.832 45.455 17.21 17.21 39.25 3.61
2293 3348 2.702270 ATTTTCCCAAGAGGCTTGGT 57.298 45.000 21.09 3.51 37.88 3.67
2294 3349 1.995376 TTTTCCCAAGAGGCTTGGTC 58.005 50.000 21.09 0.00 37.88 4.02
2295 3350 0.112412 TTTCCCAAGAGGCTTGGTCC 59.888 55.000 21.09 0.00 37.88 4.46
2296 3351 1.065410 TTCCCAAGAGGCTTGGTCCA 61.065 55.000 21.09 5.77 37.88 4.02
2297 3352 1.001641 CCCAAGAGGCTTGGTCCAG 60.002 63.158 21.09 5.82 37.88 3.86
2298 3353 1.676967 CCAAGAGGCTTGGTCCAGC 60.677 63.158 16.18 5.10 39.28 4.85
2299 3354 1.073722 CAAGAGGCTTGGTCCAGCA 59.926 57.895 13.25 0.00 42.10 4.41
2300 3355 0.959372 CAAGAGGCTTGGTCCAGCAG 60.959 60.000 13.25 1.57 42.10 4.24
2301 3356 1.422161 AAGAGGCTTGGTCCAGCAGT 61.422 55.000 13.25 2.66 42.10 4.40
2302 3357 1.673665 GAGGCTTGGTCCAGCAGTG 60.674 63.158 13.25 0.00 42.10 3.66
2303 3358 2.113986 GGCTTGGTCCAGCAGTGT 59.886 61.111 13.25 0.00 42.10 3.55
2304 3359 1.127567 AGGCTTGGTCCAGCAGTGTA 61.128 55.000 13.25 0.00 42.10 2.90
2305 3360 0.035056 GGCTTGGTCCAGCAGTGTAT 60.035 55.000 13.25 0.00 42.10 2.29
2306 3361 1.209504 GGCTTGGTCCAGCAGTGTATA 59.790 52.381 13.25 0.00 42.10 1.47
2307 3362 2.555199 GCTTGGTCCAGCAGTGTATAG 58.445 52.381 8.05 0.00 39.83 1.31
2308 3363 2.555199 CTTGGTCCAGCAGTGTATAGC 58.445 52.381 0.00 0.00 0.00 2.97
2309 3364 0.459899 TGGTCCAGCAGTGTATAGCG 59.540 55.000 0.00 0.00 35.48 4.26
2310 3365 0.744874 GGTCCAGCAGTGTATAGCGA 59.255 55.000 0.00 0.00 35.48 4.93
2311 3366 1.536284 GGTCCAGCAGTGTATAGCGAC 60.536 57.143 0.00 0.00 35.48 5.19
2312 3367 1.134367 GTCCAGCAGTGTATAGCGACA 59.866 52.381 0.00 0.00 35.48 4.35
2313 3368 1.405463 TCCAGCAGTGTATAGCGACAG 59.595 52.381 0.00 0.00 35.48 3.51
2314 3369 1.203928 CAGCAGTGTATAGCGACAGC 58.796 55.000 0.00 0.00 45.58 4.40
2315 3370 0.103208 AGCAGTGTATAGCGACAGCC 59.897 55.000 0.00 0.00 46.67 4.85
2316 3371 0.103208 GCAGTGTATAGCGACAGCCT 59.897 55.000 0.00 0.00 46.67 4.58
2317 3372 1.866063 GCAGTGTATAGCGACAGCCTC 60.866 57.143 0.00 0.00 46.67 4.70
2318 3373 1.678627 CAGTGTATAGCGACAGCCTCT 59.321 52.381 0.00 0.00 46.67 3.69
2319 3374 2.879026 CAGTGTATAGCGACAGCCTCTA 59.121 50.000 0.00 0.00 46.67 2.43
2320 3375 3.315470 CAGTGTATAGCGACAGCCTCTAA 59.685 47.826 0.00 0.00 46.67 2.10
2321 3376 3.566322 AGTGTATAGCGACAGCCTCTAAG 59.434 47.826 0.00 0.00 46.67 2.18
2322 3377 2.885266 TGTATAGCGACAGCCTCTAAGG 59.115 50.000 0.00 0.00 46.67 2.69
2323 3378 1.333177 ATAGCGACAGCCTCTAAGGG 58.667 55.000 0.00 0.00 46.67 3.95
2335 3390 1.794714 TCTAAGGGCTTAGAGGCAGG 58.205 55.000 0.00 0.00 44.58 4.85
2336 3391 1.008449 TCTAAGGGCTTAGAGGCAGGT 59.992 52.381 0.00 0.00 44.58 4.00
2337 3392 2.246588 TCTAAGGGCTTAGAGGCAGGTA 59.753 50.000 0.00 0.00 44.58 3.08
2338 3393 2.198334 AAGGGCTTAGAGGCAGGTAT 57.802 50.000 3.87 0.00 43.44 2.73
2339 3394 3.346146 AAGGGCTTAGAGGCAGGTATA 57.654 47.619 3.87 0.00 43.44 1.47
2340 3395 2.896039 AGGGCTTAGAGGCAGGTATAG 58.104 52.381 3.87 0.00 43.44 1.31
2341 3396 2.451273 AGGGCTTAGAGGCAGGTATAGA 59.549 50.000 3.87 0.00 43.44 1.98
2342 3397 2.829120 GGGCTTAGAGGCAGGTATAGAG 59.171 54.545 3.87 0.00 43.44 2.43
2343 3398 2.829120 GGCTTAGAGGCAGGTATAGAGG 59.171 54.545 0.00 0.00 40.97 3.69
2344 3399 2.232696 GCTTAGAGGCAGGTATAGAGGC 59.767 54.545 0.00 0.00 0.00 4.70
2345 3400 3.501349 CTTAGAGGCAGGTATAGAGGCA 58.499 50.000 0.00 0.00 0.00 4.75
2346 3401 2.008242 AGAGGCAGGTATAGAGGCAG 57.992 55.000 0.00 0.00 0.00 4.85
2347 3402 0.320050 GAGGCAGGTATAGAGGCAGC 59.680 60.000 0.00 0.00 0.00 5.25
2348 3403 0.399091 AGGCAGGTATAGAGGCAGCA 60.399 55.000 0.00 0.00 0.00 4.41
2349 3404 0.469917 GGCAGGTATAGAGGCAGCAA 59.530 55.000 0.00 0.00 0.00 3.91
2350 3405 1.134098 GGCAGGTATAGAGGCAGCAAA 60.134 52.381 0.00 0.00 0.00 3.68
2351 3406 2.643551 GCAGGTATAGAGGCAGCAAAA 58.356 47.619 0.00 0.00 0.00 2.44
2352 3407 3.217626 GCAGGTATAGAGGCAGCAAAAT 58.782 45.455 0.00 0.00 0.00 1.82
2353 3408 3.004106 GCAGGTATAGAGGCAGCAAAATG 59.996 47.826 0.00 0.00 0.00 2.32
2354 3409 4.454678 CAGGTATAGAGGCAGCAAAATGA 58.545 43.478 0.00 0.00 0.00 2.57
2355 3410 5.068636 CAGGTATAGAGGCAGCAAAATGAT 58.931 41.667 0.00 0.00 0.00 2.45
2356 3411 6.233434 CAGGTATAGAGGCAGCAAAATGATA 58.767 40.000 0.00 0.00 0.00 2.15
2357 3412 6.148480 CAGGTATAGAGGCAGCAAAATGATAC 59.852 42.308 0.00 0.00 0.00 2.24
2358 3413 5.997746 GGTATAGAGGCAGCAAAATGATACA 59.002 40.000 0.00 0.00 0.00 2.29
2359 3414 6.656693 GGTATAGAGGCAGCAAAATGATACAT 59.343 38.462 0.00 0.00 0.00 2.29
2360 3415 7.175641 GGTATAGAGGCAGCAAAATGATACATT 59.824 37.037 0.00 0.00 0.00 2.71
2361 3416 5.258456 AGAGGCAGCAAAATGATACATTG 57.742 39.130 0.00 0.00 0.00 2.82
2362 3417 4.708421 AGAGGCAGCAAAATGATACATTGT 59.292 37.500 0.00 0.00 0.00 2.71
2363 3418 4.751060 AGGCAGCAAAATGATACATTGTG 58.249 39.130 9.48 9.48 0.00 3.33
2364 3419 3.866910 GGCAGCAAAATGATACATTGTGG 59.133 43.478 14.00 3.00 0.00 4.17
2365 3420 4.381825 GGCAGCAAAATGATACATTGTGGA 60.382 41.667 14.00 0.00 0.00 4.02
2366 3421 5.353938 GCAGCAAAATGATACATTGTGGAT 58.646 37.500 14.00 0.00 0.00 3.41
2367 3422 5.233476 GCAGCAAAATGATACATTGTGGATG 59.767 40.000 14.00 9.20 41.71 3.51
2368 3423 5.233476 CAGCAAAATGATACATTGTGGATGC 59.767 40.000 14.00 11.35 39.47 3.91
2369 3424 5.128171 AGCAAAATGATACATTGTGGATGCT 59.872 36.000 14.00 12.80 39.47 3.79
2370 3425 5.461078 GCAAAATGATACATTGTGGATGCTC 59.539 40.000 14.00 0.00 39.47 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.979813 GCATCCAACTTGTTTAAGTGCG 59.020 45.455 0.00 0.00 46.14 5.34
94 95 5.585445 GTCATCATGATGCAGTCTCTCTTTT 59.415 40.000 27.68 0.00 38.65 2.27
96 97 4.695396 GTCATCATGATGCAGTCTCTCTT 58.305 43.478 27.68 0.00 38.65 2.85
98 99 3.051327 CGTCATCATGATGCAGTCTCTC 58.949 50.000 27.68 10.75 38.65 3.20
112 1097 2.190313 GCCATGGCCTCGTCATCA 59.810 61.111 27.24 0.00 34.56 3.07
113 1098 2.182842 GTGCCATGGCCTCGTCATC 61.183 63.158 33.44 9.86 41.09 2.92
114 1099 2.124570 GTGCCATGGCCTCGTCAT 60.125 61.111 33.44 0.00 41.09 3.06
115 1100 3.321648 AGTGCCATGGCCTCGTCA 61.322 61.111 33.44 11.50 41.09 4.35
116 1101 2.821366 CAGTGCCATGGCCTCGTC 60.821 66.667 33.44 17.53 41.09 4.20
117 1102 3.196207 AACAGTGCCATGGCCTCGT 62.196 57.895 33.44 23.07 41.09 4.18
131 1117 1.956170 ACGCCTCTTGACGCAACAG 60.956 57.895 0.00 0.00 0.00 3.16
146 1132 1.069378 CGACTAACTTCGTCCCACGC 61.069 60.000 0.00 0.00 42.21 5.34
176 1162 3.426159 CCTGTCCATTCAATGTTACACGC 60.426 47.826 0.00 0.00 0.00 5.34
185 1171 0.620556 ACGAGCCCTGTCCATTCAAT 59.379 50.000 0.00 0.00 0.00 2.57
189 1175 1.003355 CACACGAGCCCTGTCCATT 60.003 57.895 0.00 0.00 0.00 3.16
343 1333 2.050350 CGACCTCCACCTTCGCCTA 61.050 63.158 0.00 0.00 0.00 3.93
349 1339 2.920912 TTCGCCGACCTCCACCTT 60.921 61.111 0.00 0.00 0.00 3.50
392 1382 4.869440 CAGCCTCTCTCGCGCCTG 62.869 72.222 0.00 0.00 0.00 4.85
408 1398 2.813474 GCACGTACAGATGCCGCA 60.813 61.111 0.00 0.00 35.73 5.69
418 1408 1.203313 GCCAAGTTCGTGCACGTAC 59.797 57.895 33.34 33.34 39.44 3.67
419 1409 1.957186 GGCCAAGTTCGTGCACGTA 60.957 57.895 35.74 26.21 40.80 3.57
420 1410 3.276846 GGCCAAGTTCGTGCACGT 61.277 61.111 35.74 17.06 40.80 4.49
421 1411 4.368808 CGGCCAAGTTCGTGCACG 62.369 66.667 32.76 32.76 41.45 5.34
449 1439 2.223923 CCAGGTCATCGAGGACATCTTC 60.224 54.545 29.07 13.09 39.59 2.87
467 1457 1.124477 GCCCTATCCTCCCTGACCAG 61.124 65.000 0.00 0.00 0.00 4.00
473 1463 0.252927 GGCTATGCCCTATCCTCCCT 60.253 60.000 0.00 0.00 44.06 4.20
546 1556 2.841215 TGTTCCAAACTAAGACCCGTG 58.159 47.619 0.00 0.00 0.00 4.94
553 1563 6.241385 GTCGATCGATTTGTTCCAAACTAAG 58.759 40.000 22.50 0.00 30.17 2.18
598 1610 4.454847 CGAGATGTACTCATATGTACGGGT 59.545 45.833 1.90 0.00 45.14 5.28
612 1624 2.799412 ACGAGTACGATCCGAGATGTAC 59.201 50.000 0.00 12.81 42.66 2.90
614 1626 1.950828 ACGAGTACGATCCGAGATGT 58.049 50.000 0.00 0.00 42.66 3.06
615 1627 2.798847 TGTACGAGTACGATCCGAGATG 59.201 50.000 8.62 0.00 42.66 2.90
616 1628 2.799412 GTGTACGAGTACGATCCGAGAT 59.201 50.000 8.62 0.00 42.66 2.75
643 1662 5.006261 CGTGCATGTATTTATTTCGAGGACA 59.994 40.000 0.00 0.00 0.00 4.02
652 1698 4.274950 GTGCCCTACGTGCATGTATTTATT 59.725 41.667 18.83 0.00 41.46 1.40
700 1746 1.134788 AGATAGCAACTTTCGACCGGG 60.135 52.381 6.32 0.00 0.00 5.73
701 1747 2.295253 AGATAGCAACTTTCGACCGG 57.705 50.000 0.00 0.00 0.00 5.28
704 1750 3.000971 GTGCGTAGATAGCAACTTTCGAC 60.001 47.826 0.00 0.00 46.97 4.20
713 1759 1.359117 GGCTCGTGCGTAGATAGCA 59.641 57.895 3.02 0.00 42.99 3.49
717 1763 0.812811 TACTCGGCTCGTGCGTAGAT 60.813 55.000 14.26 4.34 40.82 1.98
728 1778 2.008329 CTTACGTGAGAGTACTCGGCT 58.992 52.381 17.07 0.00 45.25 5.52
753 1803 2.083774 GTGATTGATTCGGCTTGTGGA 58.916 47.619 0.00 0.00 0.00 4.02
761 1811 3.244976 GTTTTGCCTGTGATTGATTCGG 58.755 45.455 0.00 0.00 0.00 4.30
770 1820 1.032014 GGCTCTTGTTTTGCCTGTGA 58.968 50.000 0.00 0.00 43.05 3.58
1275 2325 3.755628 GCGGGCACGTCCACTCTA 61.756 66.667 11.45 0.00 43.45 2.43
1312 2362 3.626924 GTGCCGGTCCAGGTCTGT 61.627 66.667 1.90 0.00 0.00 3.41
1387 2437 3.956317 GTGCGCGGGGAACGTTTT 61.956 61.111 8.83 0.00 46.52 2.43
1593 2648 1.115467 CGAGGAGGCTACAGGTCAAT 58.885 55.000 0.00 0.00 0.00 2.57
1653 2708 0.802994 CAGAGAGCTTCTGCGAGCAG 60.803 60.000 18.20 18.20 46.30 4.24
1803 2858 0.618968 CCAGGTCCTTGTAGCCCTCT 60.619 60.000 0.00 0.00 0.00 3.69
1878 2933 3.848272 AACCCAACTACGCATCAATTG 57.152 42.857 0.00 0.00 0.00 2.32
1932 2987 3.791320 AGTTCCCTGACTGATAGGACAA 58.209 45.455 0.00 0.00 37.52 3.18
2020 3075 0.674895 CACCTTAGAGGCAGTGTGGC 60.675 60.000 0.00 0.00 39.63 5.01
2021 3076 0.036010 CCACCTTAGAGGCAGTGTGG 60.036 60.000 0.00 0.00 39.63 4.17
2022 3077 0.036010 CCCACCTTAGAGGCAGTGTG 60.036 60.000 0.00 0.00 39.63 3.82
2023 3078 1.842381 GCCCACCTTAGAGGCAGTGT 61.842 60.000 0.00 0.00 46.34 3.55
2024 3079 1.078143 GCCCACCTTAGAGGCAGTG 60.078 63.158 0.00 0.00 46.34 3.66
2025 3080 3.404773 GCCCACCTTAGAGGCAGT 58.595 61.111 0.00 0.00 46.34 4.40
2042 3097 2.840203 TTAGAGGCAGGGGTGGAGGG 62.840 65.000 0.00 0.00 0.00 4.30
2043 3098 1.306997 TTAGAGGCAGGGGTGGAGG 60.307 63.158 0.00 0.00 0.00 4.30
2044 3099 0.618968 ACTTAGAGGCAGGGGTGGAG 60.619 60.000 0.00 0.00 0.00 3.86
2045 3100 0.714180 TACTTAGAGGCAGGGGTGGA 59.286 55.000 0.00 0.00 0.00 4.02
2046 3101 1.807814 ATACTTAGAGGCAGGGGTGG 58.192 55.000 0.00 0.00 0.00 4.61
2047 3102 3.577919 ACTATACTTAGAGGCAGGGGTG 58.422 50.000 0.00 0.00 0.00 4.61
2048 3103 3.995691 ACTATACTTAGAGGCAGGGGT 57.004 47.619 0.00 0.00 0.00 4.95
2049 3104 6.742559 TTTAACTATACTTAGAGGCAGGGG 57.257 41.667 0.00 0.00 0.00 4.79
2050 3105 8.019656 TCTTTTAACTATACTTAGAGGCAGGG 57.980 38.462 0.00 0.00 0.00 4.45
2051 3106 9.886132 TTTCTTTTAACTATACTTAGAGGCAGG 57.114 33.333 0.00 0.00 0.00 4.85
2053 3108 9.362539 CGTTTCTTTTAACTATACTTAGAGGCA 57.637 33.333 0.00 0.00 0.00 4.75
2054 3109 8.326713 GCGTTTCTTTTAACTATACTTAGAGGC 58.673 37.037 0.00 0.00 0.00 4.70
2055 3110 9.362539 TGCGTTTCTTTTAACTATACTTAGAGG 57.637 33.333 0.00 0.00 0.00 3.69
2058 3113 9.456797 CGTTGCGTTTCTTTTAACTATACTTAG 57.543 33.333 0.00 0.00 0.00 2.18
2059 3114 8.977505 ACGTTGCGTTTCTTTTAACTATACTTA 58.022 29.630 0.00 0.00 36.35 2.24
2060 3115 7.854534 ACGTTGCGTTTCTTTTAACTATACTT 58.145 30.769 0.00 0.00 36.35 2.24
2061 3116 7.412137 ACGTTGCGTTTCTTTTAACTATACT 57.588 32.000 0.00 0.00 36.35 2.12
2064 3119 8.112449 GCTATACGTTGCGTTTCTTTTAACTAT 58.888 33.333 0.00 0.00 41.54 2.12
2065 3120 7.329226 AGCTATACGTTGCGTTTCTTTTAACTA 59.671 33.333 0.00 0.00 41.54 2.24
2066 3121 6.146673 AGCTATACGTTGCGTTTCTTTTAACT 59.853 34.615 0.00 0.00 41.54 2.24
2067 3122 6.301861 AGCTATACGTTGCGTTTCTTTTAAC 58.698 36.000 0.00 0.00 41.54 2.01
2068 3123 6.470557 AGCTATACGTTGCGTTTCTTTTAA 57.529 33.333 0.00 0.00 41.54 1.52
2069 3124 6.981708 GTAGCTATACGTTGCGTTTCTTTTA 58.018 36.000 0.00 0.00 41.54 1.52
2070 3125 5.850931 GTAGCTATACGTTGCGTTTCTTTT 58.149 37.500 0.00 0.00 41.54 2.27
2071 3126 5.446031 GTAGCTATACGTTGCGTTTCTTT 57.554 39.130 0.00 0.00 41.54 2.52
2095 3150 1.099879 CCACCTTAGAGGCTGCATGC 61.100 60.000 11.82 11.82 39.63 4.06
2096 3151 0.543277 TCCACCTTAGAGGCTGCATG 59.457 55.000 0.50 0.00 39.63 4.06
2097 3152 0.835941 CTCCACCTTAGAGGCTGCAT 59.164 55.000 0.50 0.00 39.63 3.96
2098 3153 1.903877 GCTCCACCTTAGAGGCTGCA 61.904 60.000 0.50 0.00 39.63 4.41
2099 3154 1.153269 GCTCCACCTTAGAGGCTGC 60.153 63.158 0.00 0.00 39.63 5.25
2100 3155 0.463620 GAGCTCCACCTTAGAGGCTG 59.536 60.000 0.87 0.00 39.63 4.85
2101 3156 0.041833 TGAGCTCCACCTTAGAGGCT 59.958 55.000 12.15 0.00 39.63 4.58
2102 3157 1.127343 ATGAGCTCCACCTTAGAGGC 58.873 55.000 12.15 0.00 39.63 4.70
2103 3158 3.900601 ACATATGAGCTCCACCTTAGAGG 59.099 47.826 12.15 0.00 42.49 3.69
2104 3159 6.040955 TGTTACATATGAGCTCCACCTTAGAG 59.959 42.308 12.15 0.00 0.00 2.43
2105 3160 5.897250 TGTTACATATGAGCTCCACCTTAGA 59.103 40.000 12.15 0.00 0.00 2.10
2106 3161 6.161855 TGTTACATATGAGCTCCACCTTAG 57.838 41.667 12.15 0.00 0.00 2.18
2107 3162 6.747414 ATGTTACATATGAGCTCCACCTTA 57.253 37.500 12.15 0.00 0.00 2.69
2108 3163 5.636903 ATGTTACATATGAGCTCCACCTT 57.363 39.130 12.15 0.00 0.00 3.50
2109 3164 6.747414 TTATGTTACATATGAGCTCCACCT 57.253 37.500 12.15 0.00 0.00 4.00
2110 3165 7.801716 TTTTATGTTACATATGAGCTCCACC 57.198 36.000 12.15 0.00 0.00 4.61
2133 3188 9.829507 CTGAGATGGTTGAAGAGAGTAAATATT 57.170 33.333 0.00 0.00 0.00 1.28
2134 3189 8.428063 CCTGAGATGGTTGAAGAGAGTAAATAT 58.572 37.037 0.00 0.00 0.00 1.28
2135 3190 7.633772 GCCTGAGATGGTTGAAGAGAGTAAATA 60.634 40.741 0.00 0.00 0.00 1.40
2136 3191 6.648192 CCTGAGATGGTTGAAGAGAGTAAAT 58.352 40.000 0.00 0.00 0.00 1.40
2137 3192 5.569630 GCCTGAGATGGTTGAAGAGAGTAAA 60.570 44.000 0.00 0.00 0.00 2.01
2138 3193 4.081420 GCCTGAGATGGTTGAAGAGAGTAA 60.081 45.833 0.00 0.00 0.00 2.24
2139 3194 3.449018 GCCTGAGATGGTTGAAGAGAGTA 59.551 47.826 0.00 0.00 0.00 2.59
2140 3195 2.235898 GCCTGAGATGGTTGAAGAGAGT 59.764 50.000 0.00 0.00 0.00 3.24
2141 3196 2.419851 GGCCTGAGATGGTTGAAGAGAG 60.420 54.545 0.00 0.00 0.00 3.20
2142 3197 1.556911 GGCCTGAGATGGTTGAAGAGA 59.443 52.381 0.00 0.00 0.00 3.10
2143 3198 1.280133 TGGCCTGAGATGGTTGAAGAG 59.720 52.381 3.32 0.00 0.00 2.85
2144 3199 1.361204 TGGCCTGAGATGGTTGAAGA 58.639 50.000 3.32 0.00 0.00 2.87
2145 3200 2.205022 TTGGCCTGAGATGGTTGAAG 57.795 50.000 3.32 0.00 0.00 3.02
2146 3201 2.673775 TTTGGCCTGAGATGGTTGAA 57.326 45.000 3.32 0.00 0.00 2.69
2147 3202 2.309755 AGATTTGGCCTGAGATGGTTGA 59.690 45.455 3.32 0.00 0.00 3.18
2148 3203 2.426024 CAGATTTGGCCTGAGATGGTTG 59.574 50.000 3.32 0.00 33.65 3.77
2149 3204 2.309755 TCAGATTTGGCCTGAGATGGTT 59.690 45.455 3.32 0.00 35.89 3.67
2150 3205 1.918262 TCAGATTTGGCCTGAGATGGT 59.082 47.619 3.32 0.00 35.89 3.55
2151 3206 2.686915 GTTCAGATTTGGCCTGAGATGG 59.313 50.000 3.32 0.00 41.16 3.51
2152 3207 3.349927 TGTTCAGATTTGGCCTGAGATG 58.650 45.455 3.32 0.00 41.16 2.90
2153 3208 3.726557 TGTTCAGATTTGGCCTGAGAT 57.273 42.857 3.32 0.00 41.16 2.75
2154 3209 3.507162 TTGTTCAGATTTGGCCTGAGA 57.493 42.857 3.32 0.00 41.16 3.27
2155 3210 4.796038 ATTTGTTCAGATTTGGCCTGAG 57.204 40.909 3.32 0.00 41.16 3.35
2156 3211 7.014518 CCATATATTTGTTCAGATTTGGCCTGA 59.985 37.037 3.32 0.00 38.74 3.86
2157 3212 7.149973 CCATATATTTGTTCAGATTTGGCCTG 58.850 38.462 3.32 0.00 0.00 4.85
2158 3213 6.268387 CCCATATATTTGTTCAGATTTGGCCT 59.732 38.462 3.32 0.00 0.00 5.19
2159 3214 6.458210 CCCATATATTTGTTCAGATTTGGCC 58.542 40.000 0.00 0.00 0.00 5.36
2160 3215 5.928264 GCCCATATATTTGTTCAGATTTGGC 59.072 40.000 0.00 0.00 0.00 4.52
2161 3216 7.294017 AGCCCATATATTTGTTCAGATTTGG 57.706 36.000 0.00 0.00 0.00 3.28
2162 3217 8.849168 TGTAGCCCATATATTTGTTCAGATTTG 58.151 33.333 0.00 0.00 0.00 2.32
2163 3218 8.995027 TGTAGCCCATATATTTGTTCAGATTT 57.005 30.769 0.00 0.00 0.00 2.17
2164 3219 7.667219 CCTGTAGCCCATATATTTGTTCAGATT 59.333 37.037 0.00 0.00 0.00 2.40
2165 3220 7.170965 CCTGTAGCCCATATATTTGTTCAGAT 58.829 38.462 0.00 0.00 0.00 2.90
2166 3221 6.465751 CCCTGTAGCCCATATATTTGTTCAGA 60.466 42.308 0.00 0.00 0.00 3.27
2167 3222 5.707298 CCCTGTAGCCCATATATTTGTTCAG 59.293 44.000 0.00 0.00 0.00 3.02
2168 3223 5.371176 TCCCTGTAGCCCATATATTTGTTCA 59.629 40.000 0.00 0.00 0.00 3.18
2169 3224 5.876357 TCCCTGTAGCCCATATATTTGTTC 58.124 41.667 0.00 0.00 0.00 3.18
2170 3225 5.922960 TCCCTGTAGCCCATATATTTGTT 57.077 39.130 0.00 0.00 0.00 2.83
2171 3226 6.183361 ACAATCCCTGTAGCCCATATATTTGT 60.183 38.462 0.00 0.00 36.10 2.83
2172 3227 6.248433 ACAATCCCTGTAGCCCATATATTTG 58.752 40.000 0.00 0.00 36.10 2.32
2173 3228 6.468972 ACAATCCCTGTAGCCCATATATTT 57.531 37.500 0.00 0.00 36.10 1.40
2174 3229 7.239773 ACTTACAATCCCTGTAGCCCATATATT 59.760 37.037 0.00 0.00 41.57 1.28
2175 3230 6.735704 ACTTACAATCCCTGTAGCCCATATAT 59.264 38.462 0.00 0.00 41.57 0.86
2176 3231 6.088819 ACTTACAATCCCTGTAGCCCATATA 58.911 40.000 0.00 0.00 41.57 0.86
2177 3232 4.913968 ACTTACAATCCCTGTAGCCCATAT 59.086 41.667 0.00 0.00 41.57 1.78
2178 3233 4.303794 ACTTACAATCCCTGTAGCCCATA 58.696 43.478 0.00 0.00 41.57 2.74
2179 3234 3.123273 ACTTACAATCCCTGTAGCCCAT 58.877 45.455 0.00 0.00 41.57 4.00
2180 3235 2.557869 ACTTACAATCCCTGTAGCCCA 58.442 47.619 0.00 0.00 41.57 5.36
2181 3236 3.071167 CCTACTTACAATCCCTGTAGCCC 59.929 52.174 0.00 0.00 41.57 5.19
2182 3237 3.071167 CCCTACTTACAATCCCTGTAGCC 59.929 52.174 0.00 0.00 41.57 3.93
2183 3238 3.494573 GCCCTACTTACAATCCCTGTAGC 60.495 52.174 0.00 0.00 41.57 3.58
2184 3239 3.071167 GGCCCTACTTACAATCCCTGTAG 59.929 52.174 0.00 0.00 41.57 2.74
2185 3240 3.043418 GGCCCTACTTACAATCCCTGTA 58.957 50.000 0.00 0.00 39.64 2.74
2186 3241 1.844497 GGCCCTACTTACAATCCCTGT 59.156 52.381 0.00 0.00 42.47 4.00
2187 3242 1.843851 TGGCCCTACTTACAATCCCTG 59.156 52.381 0.00 0.00 0.00 4.45
2188 3243 2.127708 CTGGCCCTACTTACAATCCCT 58.872 52.381 0.00 0.00 0.00 4.20
2189 3244 1.143073 CCTGGCCCTACTTACAATCCC 59.857 57.143 0.00 0.00 0.00 3.85
2190 3245 1.143073 CCCTGGCCCTACTTACAATCC 59.857 57.143 0.00 0.00 0.00 3.01
2191 3246 2.124411 TCCCTGGCCCTACTTACAATC 58.876 52.381 0.00 0.00 0.00 2.67
2192 3247 2.280308 TCCCTGGCCCTACTTACAAT 57.720 50.000 0.00 0.00 0.00 2.71
2193 3248 2.047769 TTCCCTGGCCCTACTTACAA 57.952 50.000 0.00 0.00 0.00 2.41
2194 3249 2.280308 ATTCCCTGGCCCTACTTACA 57.720 50.000 0.00 0.00 0.00 2.41
2195 3250 4.995624 ATAATTCCCTGGCCCTACTTAC 57.004 45.455 0.00 0.00 0.00 2.34
2196 3251 6.349897 AAAATAATTCCCTGGCCCTACTTA 57.650 37.500 0.00 0.00 0.00 2.24
2197 3252 4.899898 AAATAATTCCCTGGCCCTACTT 57.100 40.909 0.00 0.00 0.00 2.24
2198 3253 4.899898 AAAATAATTCCCTGGCCCTACT 57.100 40.909 0.00 0.00 0.00 2.57
2199 3254 5.535030 CACTAAAATAATTCCCTGGCCCTAC 59.465 44.000 0.00 0.00 0.00 3.18
2200 3255 5.701224 CACTAAAATAATTCCCTGGCCCTA 58.299 41.667 0.00 0.00 0.00 3.53
2201 3256 4.546674 CACTAAAATAATTCCCTGGCCCT 58.453 43.478 0.00 0.00 0.00 5.19
2202 3257 3.069586 GCACTAAAATAATTCCCTGGCCC 59.930 47.826 0.00 0.00 0.00 5.80
2203 3258 3.704061 TGCACTAAAATAATTCCCTGGCC 59.296 43.478 0.00 0.00 0.00 5.36
2204 3259 5.337578 TTGCACTAAAATAATTCCCTGGC 57.662 39.130 0.00 0.00 0.00 4.85
2205 3260 7.169158 TCTTTGCACTAAAATAATTCCCTGG 57.831 36.000 0.00 0.00 0.00 4.45
2206 3261 9.657419 ATTTCTTTGCACTAAAATAATTCCCTG 57.343 29.630 0.00 0.00 0.00 4.45
2207 3262 9.657419 CATTTCTTTGCACTAAAATAATTCCCT 57.343 29.630 0.00 0.00 0.00 4.20
2208 3263 8.882736 CCATTTCTTTGCACTAAAATAATTCCC 58.117 33.333 0.00 0.00 0.00 3.97
2209 3264 8.390354 GCCATTTCTTTGCACTAAAATAATTCC 58.610 33.333 0.00 0.00 0.00 3.01
2210 3265 9.154847 AGCCATTTCTTTGCACTAAAATAATTC 57.845 29.630 0.00 0.00 0.00 2.17
2211 3266 9.506018 AAGCCATTTCTTTGCACTAAAATAATT 57.494 25.926 0.00 0.00 0.00 1.40
2213 3268 9.638239 CTAAGCCATTTCTTTGCACTAAAATAA 57.362 29.630 0.00 0.00 0.00 1.40
2214 3269 9.019656 TCTAAGCCATTTCTTTGCACTAAAATA 57.980 29.630 0.00 0.00 0.00 1.40
2215 3270 7.895759 TCTAAGCCATTTCTTTGCACTAAAAT 58.104 30.769 0.00 0.00 0.00 1.82
2216 3271 7.283625 TCTAAGCCATTTCTTTGCACTAAAA 57.716 32.000 0.00 0.00 0.00 1.52
2217 3272 6.071952 CCTCTAAGCCATTTCTTTGCACTAAA 60.072 38.462 0.00 0.00 0.00 1.85
2218 3273 5.415701 CCTCTAAGCCATTTCTTTGCACTAA 59.584 40.000 0.00 0.00 0.00 2.24
2219 3274 4.943705 CCTCTAAGCCATTTCTTTGCACTA 59.056 41.667 0.00 0.00 0.00 2.74
2220 3275 3.760684 CCTCTAAGCCATTTCTTTGCACT 59.239 43.478 0.00 0.00 0.00 4.40
2221 3276 3.674410 GCCTCTAAGCCATTTCTTTGCAC 60.674 47.826 0.00 0.00 0.00 4.57
2222 3277 2.493278 GCCTCTAAGCCATTTCTTTGCA 59.507 45.455 0.00 0.00 0.00 4.08
2223 3278 2.493278 TGCCTCTAAGCCATTTCTTTGC 59.507 45.455 0.00 0.00 0.00 3.68
2224 3279 3.428589 GCTGCCTCTAAGCCATTTCTTTG 60.429 47.826 0.00 0.00 34.45 2.77
2225 3280 2.757314 GCTGCCTCTAAGCCATTTCTTT 59.243 45.455 0.00 0.00 34.45 2.52
2226 3281 2.373224 GCTGCCTCTAAGCCATTTCTT 58.627 47.619 0.00 0.00 34.45 2.52
2227 3282 2.049888 GCTGCCTCTAAGCCATTTCT 57.950 50.000 0.00 0.00 34.45 2.52
2240 3295 1.277557 CTCTAACACAAGAGGCTGCCT 59.722 52.381 23.64 23.64 39.52 4.75
2241 3296 1.731720 CTCTAACACAAGAGGCTGCC 58.268 55.000 11.65 11.65 39.52 4.85
2247 3302 1.929836 GCATCGCCTCTAACACAAGAG 59.070 52.381 0.00 0.00 42.30 2.85
2248 3303 1.550524 AGCATCGCCTCTAACACAAGA 59.449 47.619 0.00 0.00 0.00 3.02
2249 3304 2.015736 AGCATCGCCTCTAACACAAG 57.984 50.000 0.00 0.00 0.00 3.16
2250 3305 2.758423 TCTAGCATCGCCTCTAACACAA 59.242 45.455 0.00 0.00 0.00 3.33
2251 3306 2.359214 CTCTAGCATCGCCTCTAACACA 59.641 50.000 0.00 0.00 0.00 3.72
2252 3307 2.619177 TCTCTAGCATCGCCTCTAACAC 59.381 50.000 0.00 0.00 0.00 3.32
2253 3308 2.932261 TCTCTAGCATCGCCTCTAACA 58.068 47.619 0.00 0.00 0.00 2.41
2254 3309 3.992260 TTCTCTAGCATCGCCTCTAAC 57.008 47.619 0.00 0.00 0.00 2.34
2255 3310 5.537300 AAATTCTCTAGCATCGCCTCTAA 57.463 39.130 0.00 0.00 0.00 2.10
2256 3311 5.509840 GGAAAATTCTCTAGCATCGCCTCTA 60.510 44.000 0.00 0.00 0.00 2.43
2257 3312 4.376146 GAAAATTCTCTAGCATCGCCTCT 58.624 43.478 0.00 0.00 0.00 3.69
2258 3313 3.496507 GGAAAATTCTCTAGCATCGCCTC 59.503 47.826 0.00 0.00 0.00 4.70
2259 3314 3.471680 GGAAAATTCTCTAGCATCGCCT 58.528 45.455 0.00 0.00 0.00 5.52
2260 3315 2.550180 GGGAAAATTCTCTAGCATCGCC 59.450 50.000 0.00 0.00 0.00 5.54
2261 3316 3.206150 TGGGAAAATTCTCTAGCATCGC 58.794 45.455 0.00 0.00 0.00 4.58
2262 3317 5.118990 TCTTGGGAAAATTCTCTAGCATCG 58.881 41.667 0.35 0.00 31.77 3.84
2263 3318 5.530543 CCTCTTGGGAAAATTCTCTAGCATC 59.469 44.000 0.35 0.00 37.23 3.91
2264 3319 5.444176 CCTCTTGGGAAAATTCTCTAGCAT 58.556 41.667 0.35 0.00 37.23 3.79
2265 3320 4.848357 CCTCTTGGGAAAATTCTCTAGCA 58.152 43.478 0.35 0.00 37.23 3.49
2266 3321 3.629855 GCCTCTTGGGAAAATTCTCTAGC 59.370 47.826 0.35 0.00 37.23 3.42
2267 3322 5.109500 AGCCTCTTGGGAAAATTCTCTAG 57.891 43.478 0.00 0.00 37.23 2.43
2268 3323 5.256474 CAAGCCTCTTGGGAAAATTCTCTA 58.744 41.667 0.00 0.00 37.23 2.43
2269 3324 4.085009 CAAGCCTCTTGGGAAAATTCTCT 58.915 43.478 0.00 0.00 37.23 3.10
2270 3325 3.194329 CCAAGCCTCTTGGGAAAATTCTC 59.806 47.826 15.86 0.00 37.23 2.87
2271 3326 3.168292 CCAAGCCTCTTGGGAAAATTCT 58.832 45.455 15.86 0.00 37.23 2.40
2272 3327 2.899900 ACCAAGCCTCTTGGGAAAATTC 59.100 45.455 24.42 0.00 43.71 2.17
2273 3328 2.899900 GACCAAGCCTCTTGGGAAAATT 59.100 45.455 24.42 7.09 43.71 1.82
2274 3329 2.529632 GACCAAGCCTCTTGGGAAAAT 58.470 47.619 24.42 7.72 43.71 1.82
2275 3330 1.480498 GGACCAAGCCTCTTGGGAAAA 60.480 52.381 24.42 0.00 43.71 2.29
2276 3331 0.112412 GGACCAAGCCTCTTGGGAAA 59.888 55.000 24.42 0.00 43.71 3.13
2277 3332 1.065410 TGGACCAAGCCTCTTGGGAA 61.065 55.000 24.42 10.51 43.71 3.97
2278 3333 1.463214 TGGACCAAGCCTCTTGGGA 60.463 57.895 24.42 9.45 43.71 4.37
2279 3334 1.001641 CTGGACCAAGCCTCTTGGG 60.002 63.158 24.42 10.62 43.71 4.12
2280 3335 1.676967 GCTGGACCAAGCCTCTTGG 60.677 63.158 20.58 20.58 44.91 3.61
2281 3336 0.959372 CTGCTGGACCAAGCCTCTTG 60.959 60.000 11.80 0.00 42.83 3.02
2282 3337 1.377994 CTGCTGGACCAAGCCTCTT 59.622 57.895 11.80 0.00 42.83 2.85
2283 3338 1.845205 ACTGCTGGACCAAGCCTCT 60.845 57.895 11.80 0.00 42.83 3.69
2284 3339 1.673665 CACTGCTGGACCAAGCCTC 60.674 63.158 11.80 0.00 42.83 4.70
2285 3340 1.127567 TACACTGCTGGACCAAGCCT 61.128 55.000 11.80 0.00 42.83 4.58
2286 3341 0.035056 ATACACTGCTGGACCAAGCC 60.035 55.000 11.80 0.00 42.83 4.35
2287 3342 2.555199 CTATACACTGCTGGACCAAGC 58.445 52.381 0.00 2.20 43.82 4.01
2288 3343 2.555199 GCTATACACTGCTGGACCAAG 58.445 52.381 0.00 0.00 0.00 3.61
2289 3344 1.134818 CGCTATACACTGCTGGACCAA 60.135 52.381 0.00 0.00 0.00 3.67
2290 3345 0.459899 CGCTATACACTGCTGGACCA 59.540 55.000 0.00 0.00 0.00 4.02
2291 3346 0.744874 TCGCTATACACTGCTGGACC 59.255 55.000 0.00 0.00 0.00 4.46
2292 3347 1.134367 TGTCGCTATACACTGCTGGAC 59.866 52.381 0.00 0.00 0.00 4.02
2293 3348 1.405463 CTGTCGCTATACACTGCTGGA 59.595 52.381 0.00 0.00 0.00 3.86
2294 3349 1.845266 CTGTCGCTATACACTGCTGG 58.155 55.000 0.00 0.00 0.00 4.85
2295 3350 1.203928 GCTGTCGCTATACACTGCTG 58.796 55.000 0.00 0.00 35.29 4.41
2296 3351 0.103208 GGCTGTCGCTATACACTGCT 59.897 55.000 0.00 0.00 37.55 4.24
2297 3352 0.103208 AGGCTGTCGCTATACACTGC 59.897 55.000 0.00 0.00 36.89 4.40
2298 3353 1.678627 AGAGGCTGTCGCTATACACTG 59.321 52.381 0.00 0.00 36.09 3.66
2299 3354 2.060050 AGAGGCTGTCGCTATACACT 57.940 50.000 0.00 0.00 36.09 3.55
2300 3355 3.304794 CCTTAGAGGCTGTCGCTATACAC 60.305 52.174 0.00 0.00 36.09 2.90
2301 3356 2.885266 CCTTAGAGGCTGTCGCTATACA 59.115 50.000 0.00 0.00 36.09 2.29
2302 3357 2.229302 CCCTTAGAGGCTGTCGCTATAC 59.771 54.545 0.00 0.00 32.73 1.47
2303 3358 2.515854 CCCTTAGAGGCTGTCGCTATA 58.484 52.381 0.00 0.00 32.73 1.31
2304 3359 1.333177 CCCTTAGAGGCTGTCGCTAT 58.667 55.000 0.00 0.00 32.73 2.97
2305 3360 2.808598 CCCTTAGAGGCTGTCGCTA 58.191 57.895 0.00 0.00 32.73 4.26
2306 3361 3.622514 CCCTTAGAGGCTGTCGCT 58.377 61.111 0.00 0.00 32.73 4.93
2316 3371 1.008449 ACCTGCCTCTAAGCCCTTAGA 59.992 52.381 14.98 14.98 46.51 2.10
2317 3372 1.501582 ACCTGCCTCTAAGCCCTTAG 58.498 55.000 8.43 8.43 42.86 2.18
2318 3373 2.860817 TACCTGCCTCTAAGCCCTTA 57.139 50.000 0.00 0.00 0.00 2.69
2319 3374 2.198334 ATACCTGCCTCTAAGCCCTT 57.802 50.000 0.00 0.00 0.00 3.95
2320 3375 2.451273 TCTATACCTGCCTCTAAGCCCT 59.549 50.000 0.00 0.00 0.00 5.19
2321 3376 2.829120 CTCTATACCTGCCTCTAAGCCC 59.171 54.545 0.00 0.00 0.00 5.19
2322 3377 2.829120 CCTCTATACCTGCCTCTAAGCC 59.171 54.545 0.00 0.00 0.00 4.35
2323 3378 2.232696 GCCTCTATACCTGCCTCTAAGC 59.767 54.545 0.00 0.00 0.00 3.09
2324 3379 3.501349 TGCCTCTATACCTGCCTCTAAG 58.499 50.000 0.00 0.00 0.00 2.18
2325 3380 3.501349 CTGCCTCTATACCTGCCTCTAA 58.499 50.000 0.00 0.00 0.00 2.10
2326 3381 2.819726 GCTGCCTCTATACCTGCCTCTA 60.820 54.545 0.00 0.00 0.00 2.43
2327 3382 2.008242 CTGCCTCTATACCTGCCTCT 57.992 55.000 0.00 0.00 0.00 3.69
2328 3383 0.320050 GCTGCCTCTATACCTGCCTC 59.680 60.000 0.00 0.00 0.00 4.70
2329 3384 0.399091 TGCTGCCTCTATACCTGCCT 60.399 55.000 0.00 0.00 0.00 4.75
2330 3385 0.469917 TTGCTGCCTCTATACCTGCC 59.530 55.000 0.00 0.00 0.00 4.85
2331 3386 2.332063 TTTGCTGCCTCTATACCTGC 57.668 50.000 0.00 0.00 0.00 4.85
2332 3387 4.454678 TCATTTTGCTGCCTCTATACCTG 58.545 43.478 0.00 0.00 0.00 4.00
2333 3388 4.778213 TCATTTTGCTGCCTCTATACCT 57.222 40.909 0.00 0.00 0.00 3.08
2334 3389 5.997746 TGTATCATTTTGCTGCCTCTATACC 59.002 40.000 0.00 0.00 0.00 2.73
2335 3390 7.678947 ATGTATCATTTTGCTGCCTCTATAC 57.321 36.000 0.00 0.00 0.00 1.47
2336 3391 7.720957 ACAATGTATCATTTTGCTGCCTCTATA 59.279 33.333 0.00 0.00 0.00 1.31
2337 3392 6.548622 ACAATGTATCATTTTGCTGCCTCTAT 59.451 34.615 0.00 0.00 0.00 1.98
2338 3393 5.887598 ACAATGTATCATTTTGCTGCCTCTA 59.112 36.000 0.00 0.00 0.00 2.43
2339 3394 4.708421 ACAATGTATCATTTTGCTGCCTCT 59.292 37.500 0.00 0.00 0.00 3.69
2340 3395 4.802039 CACAATGTATCATTTTGCTGCCTC 59.198 41.667 0.00 0.00 0.00 4.70
2341 3396 4.382254 CCACAATGTATCATTTTGCTGCCT 60.382 41.667 0.00 0.00 0.00 4.75
2342 3397 3.866910 CCACAATGTATCATTTTGCTGCC 59.133 43.478 0.00 0.00 0.00 4.85
2343 3398 4.746729 TCCACAATGTATCATTTTGCTGC 58.253 39.130 0.00 0.00 0.00 5.25
2344 3399 5.233476 GCATCCACAATGTATCATTTTGCTG 59.767 40.000 3.90 4.94 37.71 4.41
2345 3400 5.128171 AGCATCCACAATGTATCATTTTGCT 59.872 36.000 3.90 0.00 37.71 3.91
2346 3401 5.353938 AGCATCCACAATGTATCATTTTGC 58.646 37.500 3.90 0.00 37.71 3.68
2347 3402 6.802608 AGAGCATCCACAATGTATCATTTTG 58.197 36.000 0.00 2.77 37.71 2.44
2348 3403 8.408601 GTTAGAGCATCCACAATGTATCATTTT 58.591 33.333 0.00 0.00 37.71 1.82
2349 3404 7.776969 AGTTAGAGCATCCACAATGTATCATTT 59.223 33.333 0.00 0.00 37.71 2.32
2350 3405 7.228108 CAGTTAGAGCATCCACAATGTATCATT 59.772 37.037 0.00 0.00 37.71 2.57
2351 3406 6.709397 CAGTTAGAGCATCCACAATGTATCAT 59.291 38.462 0.00 0.00 37.71 2.45
2352 3407 6.051074 CAGTTAGAGCATCCACAATGTATCA 58.949 40.000 0.00 0.00 37.71 2.15
2353 3408 5.049818 GCAGTTAGAGCATCCACAATGTATC 60.050 44.000 0.00 0.00 37.71 2.24
2354 3409 4.818546 GCAGTTAGAGCATCCACAATGTAT 59.181 41.667 0.00 0.00 37.71 2.29
2355 3410 4.191544 GCAGTTAGAGCATCCACAATGTA 58.808 43.478 0.00 0.00 37.71 2.29
2356 3411 3.012518 GCAGTTAGAGCATCCACAATGT 58.987 45.455 0.00 0.00 37.71 2.71
2357 3412 2.031314 CGCAGTTAGAGCATCCACAATG 59.969 50.000 0.00 0.00 38.50 2.82
2358 3413 2.093500 TCGCAGTTAGAGCATCCACAAT 60.093 45.455 0.00 0.00 33.66 2.71
2359 3414 1.275010 TCGCAGTTAGAGCATCCACAA 59.725 47.619 0.00 0.00 33.66 3.33
2360 3415 0.894835 TCGCAGTTAGAGCATCCACA 59.105 50.000 0.00 0.00 33.66 4.17
2361 3416 1.135139 TCTCGCAGTTAGAGCATCCAC 59.865 52.381 0.00 0.00 35.79 4.02
2362 3417 1.474330 TCTCGCAGTTAGAGCATCCA 58.526 50.000 0.00 0.00 35.79 3.41
2363 3418 2.586258 TTCTCGCAGTTAGAGCATCC 57.414 50.000 0.00 0.00 35.79 3.51
2364 3419 3.303001 GCATTTCTCGCAGTTAGAGCATC 60.303 47.826 0.00 0.00 35.79 3.91
2365 3420 2.611292 GCATTTCTCGCAGTTAGAGCAT 59.389 45.455 0.00 0.00 35.79 3.79
2366 3421 2.002586 GCATTTCTCGCAGTTAGAGCA 58.997 47.619 0.00 0.00 35.79 4.26
2367 3422 2.002586 TGCATTTCTCGCAGTTAGAGC 58.997 47.619 0.00 0.00 35.79 4.09
2368 3423 3.620374 ACATGCATTTCTCGCAGTTAGAG 59.380 43.478 0.00 0.00 43.88 2.43
2369 3424 3.599343 ACATGCATTTCTCGCAGTTAGA 58.401 40.909 0.00 0.00 43.88 2.10
2370 3425 3.620374 AGACATGCATTTCTCGCAGTTAG 59.380 43.478 9.61 0.00 43.88 2.34
2687 4295 2.584791 GCATCGTGTTCAACCATGTTC 58.415 47.619 0.00 0.00 30.67 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.