Multiple sequence alignment - TraesCS7B01G375300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G375300 chr7B 100.000 4658 0 0 1 4658 640713530 640718187 0.000000e+00 8602.0
1 TraesCS7B01G375300 chr7B 85.458 612 69 8 759 1357 640551692 640552296 1.840000e-173 619.0
2 TraesCS7B01G375300 chr7B 87.586 290 31 3 3077 3362 640524269 640524557 9.660000e-87 331.0
3 TraesCS7B01G375300 chr7B 86.159 289 36 2 3078 3362 640582750 640583038 4.530000e-80 309.0
4 TraesCS7B01G375300 chr7B 92.344 209 14 2 4448 4655 63643901 63644108 3.520000e-76 296.0
5 TraesCS7B01G375300 chr7B 94.054 185 9 2 1358 1541 640552344 640552527 3.550000e-71 279.0
6 TraesCS7B01G375300 chr7B 85.542 166 11 3 1396 1550 647011533 647011370 1.340000e-35 161.0
7 TraesCS7B01G375300 chr7B 76.500 200 30 13 4131 4320 748508000 748507808 4.960000e-15 93.5
8 TraesCS7B01G375300 chr7B 81.915 94 9 8 2823 2912 376997211 376997300 6.470000e-09 73.1
9 TraesCS7B01G375300 chr7D 91.991 2797 154 34 1358 4123 577262397 577265154 0.000000e+00 3860.0
10 TraesCS7B01G375300 chr7D 91.612 2432 139 17 1538 3961 577258370 577260744 0.000000e+00 3301.0
11 TraesCS7B01G375300 chr7D 87.697 634 42 14 735 1353 577257495 577258107 0.000000e+00 706.0
12 TraesCS7B01G375300 chr7D 83.156 659 93 10 1 649 113787287 113786637 1.870000e-163 586.0
13 TraesCS7B01G375300 chr7D 83.932 585 40 21 739 1296 577261386 577261943 1.160000e-140 510.0
14 TraesCS7B01G375300 chr7D 84.516 310 26 8 4138 4445 577265373 577265662 2.120000e-73 287.0
15 TraesCS7B01G375300 chr7D 93.827 162 9 1 1390 1551 577258186 577258346 4.660000e-60 243.0
16 TraesCS7B01G375300 chr7D 90.141 71 6 1 655 724 577261222 577261292 1.780000e-14 91.6
17 TraesCS7B01G375300 chr7A 90.382 1570 102 18 1538 3100 669514967 669516494 0.000000e+00 2017.0
18 TraesCS7B01G375300 chr7A 90.362 1380 99 15 3093 4445 669517726 669519098 0.000000e+00 1781.0
19 TraesCS7B01G375300 chr7A 86.929 635 42 16 734 1354 669514094 669514701 0.000000e+00 675.0
20 TraesCS7B01G375300 chr7A 84.835 666 78 16 1 652 460514845 460514189 0.000000e+00 649.0
21 TraesCS7B01G375300 chr7A 89.815 216 22 0 4443 4658 102099666 102099451 1.280000e-70 278.0
22 TraesCS7B01G375300 chr7A 92.308 195 13 2 1358 1551 669514750 669514943 4.590000e-70 276.0
23 TraesCS7B01G375300 chr7A 83.803 284 38 3 920 1203 612703106 612703381 3.570000e-66 263.0
24 TraesCS7B01G375300 chr6D 91.768 656 45 6 1 652 79088421 79087771 0.000000e+00 904.0
25 TraesCS7B01G375300 chr6D 84.290 331 52 0 2442 2772 122255708 122256038 1.620000e-84 324.0
26 TraesCS7B01G375300 chr6D 77.491 271 48 10 4022 4286 312679909 312680172 2.900000e-32 150.0
27 TraesCS7B01G375300 chr4B 85.997 657 83 6 1 652 191509028 191509680 0.000000e+00 695.0
28 TraesCS7B01G375300 chr4B 91.388 209 17 1 4447 4655 579430376 579430583 7.630000e-73 285.0
29 TraesCS7B01G375300 chr4B 89.231 65 4 3 2823 2886 89514116 89514178 1.390000e-10 78.7
30 TraesCS7B01G375300 chr1A 88.115 589 61 6 3 586 300839663 300840247 0.000000e+00 691.0
31 TraesCS7B01G375300 chr1A 82.185 421 47 11 920 1340 563755293 563755685 2.080000e-88 337.0
32 TraesCS7B01G375300 chr1A 76.404 356 58 17 3969 4312 49148591 49148932 8.020000e-38 169.0
33 TraesCS7B01G375300 chr2A 85.392 664 74 17 2 652 286473585 286472932 0.000000e+00 667.0
34 TraesCS7B01G375300 chr3A 91.570 344 28 1 1 343 587972925 587972582 1.520000e-129 473.0
35 TraesCS7B01G375300 chr3A 94.340 53 2 1 2820 2871 681630316 681630368 3.860000e-11 80.5
36 TraesCS7B01G375300 chr6A 81.290 465 74 13 1873 2329 149926750 149926291 9.520000e-97 364.0
37 TraesCS7B01G375300 chr6A 84.290 331 52 0 2442 2772 149926047 149925717 1.620000e-84 324.0
38 TraesCS7B01G375300 chr6A 90.995 211 18 1 4445 4655 583381185 583381394 2.740000e-72 283.0
39 TraesCS7B01G375300 chr6B 81.948 421 48 11 920 1340 502721600 502721992 9.660000e-87 331.0
40 TraesCS7B01G375300 chr6B 81.710 421 49 13 920 1340 705836761 705836369 4.490000e-85 326.0
41 TraesCS7B01G375300 chr6B 84.290 331 52 0 2442 2772 214027755 214028085 1.620000e-84 324.0
42 TraesCS7B01G375300 chr6B 90.566 212 18 2 4445 4655 182751017 182751227 3.550000e-71 279.0
43 TraesCS7B01G375300 chr6B 78.125 224 40 8 4041 4260 514285008 514284790 2.920000e-27 134.0
44 TraesCS7B01G375300 chr3B 79.749 479 78 16 1850 2318 134460981 134461450 3.470000e-86 329.0
45 TraesCS7B01G375300 chr3B 79.461 482 79 17 1850 2319 42580409 42580882 1.620000e-84 324.0
46 TraesCS7B01G375300 chr3D 81.473 421 51 11 920 1340 513939277 513939670 2.090000e-83 320.0
47 TraesCS7B01G375300 chr1B 91.981 212 17 0 4447 4658 336197412 336197201 9.800000e-77 298.0
48 TraesCS7B01G375300 chr1B 84.564 149 22 1 1 148 62388262 62388114 3.760000e-31 147.0
49 TraesCS7B01G375300 chr1B 92.727 55 1 2 2821 2872 223796924 223796978 5.000000e-10 76.8
50 TraesCS7B01G375300 chr1B 95.349 43 1 1 2829 2871 561876428 561876387 3.010000e-07 67.6
51 TraesCS7B01G375300 chr5B 90.783 217 20 0 4442 4658 446901105 446900889 1.640000e-74 291.0
52 TraesCS7B01G375300 chr5D 90.566 212 20 0 4444 4655 275165893 275166104 9.870000e-72 281.0
53 TraesCS7B01G375300 chr2D 90.521 211 20 0 4445 4655 391826799 391827009 3.550000e-71 279.0
54 TraesCS7B01G375300 chr2D 84.722 72 7 4 2817 2886 555393206 555393137 8.360000e-08 69.4
55 TraesCS7B01G375300 chr4A 77.778 315 70 0 144 458 639181778 639181464 1.320000e-45 195.0
56 TraesCS7B01G375300 chr5A 78.788 264 44 8 3990 4249 38788933 38788678 2.880000e-37 167.0
57 TraesCS7B01G375300 chr5A 79.327 208 30 10 4078 4277 294260356 294260154 2.920000e-27 134.0
58 TraesCS7B01G375300 chr5A 81.212 165 23 7 4152 4312 387395744 387395904 4.890000e-25 126.0
59 TraesCS7B01G375300 chr1D 84.106 151 20 2 2 148 41979004 41978854 4.860000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G375300 chr7B 640713530 640718187 4657 False 8602.000000 8602 100.000000 1 4658 1 chr7B.!!$F5 4657
1 TraesCS7B01G375300 chr7B 640551692 640552527 835 False 449.000000 619 89.756000 759 1541 2 chr7B.!!$F6 782
2 TraesCS7B01G375300 chr7D 577257495 577265662 8167 False 1285.514286 3860 89.102286 655 4445 7 chr7D.!!$F1 3790
3 TraesCS7B01G375300 chr7D 113786637 113787287 650 True 586.000000 586 83.156000 1 649 1 chr7D.!!$R1 648
4 TraesCS7B01G375300 chr7A 669514094 669519098 5004 False 1187.250000 2017 89.995250 734 4445 4 chr7A.!!$F2 3711
5 TraesCS7B01G375300 chr7A 460514189 460514845 656 True 649.000000 649 84.835000 1 652 1 chr7A.!!$R2 651
6 TraesCS7B01G375300 chr6D 79087771 79088421 650 True 904.000000 904 91.768000 1 652 1 chr6D.!!$R1 651
7 TraesCS7B01G375300 chr4B 191509028 191509680 652 False 695.000000 695 85.997000 1 652 1 chr4B.!!$F2 651
8 TraesCS7B01G375300 chr1A 300839663 300840247 584 False 691.000000 691 88.115000 3 586 1 chr1A.!!$F2 583
9 TraesCS7B01G375300 chr2A 286472932 286473585 653 True 667.000000 667 85.392000 2 652 1 chr2A.!!$R1 650
10 TraesCS7B01G375300 chr6A 149925717 149926750 1033 True 344.000000 364 82.790000 1873 2772 2 chr6A.!!$R1 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 702 0.036164 TAGGCGGACAAGCACAACAT 59.964 50.000 0.00 0.0 39.27 2.71 F
683 704 0.168128 GGCGGACAAGCACAACATAC 59.832 55.000 0.00 0.0 39.27 2.39 F
684 705 0.179225 GCGGACAAGCACAACATACG 60.179 55.000 0.00 0.0 37.05 3.06 F
697 718 0.242825 ACATACGTACAGCAGCGTGT 59.757 50.000 0.00 0.0 41.68 4.49 F
829 859 0.250295 TTTCCTCAACTCCACTGCCG 60.250 55.000 0.00 0.0 0.00 5.69 F
1228 1286 0.459489 GAGCACAGCCTTCTCGATCT 59.541 55.000 0.00 0.0 0.00 2.75 F
1346 1405 0.623324 TATCTTGGGAGTGGGTGGGG 60.623 60.000 0.00 0.0 0.00 4.96 F
3263 9009 1.076549 GGGTCTTGACATTGGCCCA 59.923 57.895 12.24 0.0 36.25 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 6691 0.968405 ACCAATGCAACTTCGGCAAT 59.032 45.000 0.00 0.00 45.60 3.56 R
2672 7175 1.649664 CTTCGACTTGGCCATCTCAG 58.350 55.000 6.09 2.68 0.00 3.35 R
2678 7181 3.646715 CCCCCTTCGACTTGGCCA 61.647 66.667 0.00 0.00 0.00 5.36 R
2827 7332 1.667830 GCGGGGCAAAAGCCTTTTC 60.668 57.895 0.00 0.00 0.00 2.29 R
2935 7441 7.069085 AGGATCAAATAGTACTTGCATTGCATT 59.931 33.333 12.95 5.36 38.76 3.56 R
3129 8875 2.288961 ACAGTTGTGTCGAGTTCGTT 57.711 45.000 1.07 0.00 40.80 3.85 R
3365 9111 3.615110 GCTGGATATGGGTACTCACATCG 60.615 52.174 7.90 0.00 38.73 3.84 R
4453 10441 0.103208 GATAGGGTCGTGCAGTGGAG 59.897 60.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 58 3.208747 AGTTCAACACCAACCCTACAG 57.791 47.619 0.00 0.00 0.00 2.74
52 60 1.809133 TCAACACCAACCCTACAGGA 58.191 50.000 0.00 0.00 39.89 3.86
54 62 0.769247 AACACCAACCCTACAGGACC 59.231 55.000 0.00 0.00 39.89 4.46
78 88 1.352352 ACAACTAGGAGCCAGCACAAT 59.648 47.619 0.00 0.00 0.00 2.71
79 89 2.571653 ACAACTAGGAGCCAGCACAATA 59.428 45.455 0.00 0.00 0.00 1.90
84 94 0.453390 GGAGCCAGCACAATAGCAAC 59.547 55.000 0.00 0.00 36.85 4.17
101 112 1.267806 CAACAGCACGAAAGCCAGATT 59.732 47.619 0.00 0.00 34.23 2.40
238 254 1.812922 CGCTTCGCAGCTCCTTGAT 60.813 57.895 5.33 0.00 44.85 2.57
256 272 4.826274 TGATCCCTTCTCCTTGTTGTAG 57.174 45.455 0.00 0.00 0.00 2.74
306 322 4.976116 CCACGGAGAAAACAATCTCAAAAC 59.024 41.667 6.64 0.00 46.24 2.43
320 336 7.591426 ACAATCTCAAAACGAGTTTTAATCTGC 59.409 33.333 12.83 0.00 42.88 4.26
458 475 3.222173 TGCCAATAACTATTCGGGCAT 57.778 42.857 8.65 0.00 38.83 4.40
463 480 5.334879 GCCAATAACTATTCGGGCATAAGTG 60.335 44.000 0.00 0.00 35.78 3.16
561 578 6.040729 TGGAAGACTCAATCTCATTGCAAAAA 59.959 34.615 1.71 0.00 40.05 1.94
563 580 6.022163 AGACTCAATCTCATTGCAAAAAGG 57.978 37.500 1.71 0.00 40.05 3.11
569 587 5.796424 ATCTCATTGCAAAAAGGACACTT 57.204 34.783 1.71 0.00 38.99 3.16
587 605 3.590574 GGGTTCCCAGGCCACCTT 61.591 66.667 5.01 0.00 0.00 3.50
640 661 0.604578 CCTGGGACATTTGCCACAAG 59.395 55.000 0.00 0.00 38.57 3.16
652 673 7.669427 ACATTTGCCACAAGAAGATTTTGATA 58.331 30.769 0.00 0.00 0.00 2.15
653 674 8.316214 ACATTTGCCACAAGAAGATTTTGATAT 58.684 29.630 0.00 0.00 0.00 1.63
654 675 8.600625 CATTTGCCACAAGAAGATTTTGATATG 58.399 33.333 0.00 0.00 0.00 1.78
655 676 5.653507 TGCCACAAGAAGATTTTGATATGC 58.346 37.500 0.00 0.00 0.00 3.14
656 677 5.045872 GCCACAAGAAGATTTTGATATGCC 58.954 41.667 0.00 0.00 0.00 4.40
657 678 5.163478 GCCACAAGAAGATTTTGATATGCCT 60.163 40.000 0.00 0.00 0.00 4.75
658 679 6.628844 GCCACAAGAAGATTTTGATATGCCTT 60.629 38.462 0.00 0.00 0.00 4.35
659 680 7.416664 GCCACAAGAAGATTTTGATATGCCTTA 60.417 37.037 0.00 0.00 0.00 2.69
660 681 7.917505 CCACAAGAAGATTTTGATATGCCTTAC 59.082 37.037 0.00 0.00 0.00 2.34
661 682 7.917505 CACAAGAAGATTTTGATATGCCTTACC 59.082 37.037 0.00 0.00 0.00 2.85
662 683 7.836183 ACAAGAAGATTTTGATATGCCTTACCT 59.164 33.333 0.00 0.00 0.00 3.08
663 684 9.342308 CAAGAAGATTTTGATATGCCTTACCTA 57.658 33.333 0.00 0.00 0.00 3.08
664 685 9.566432 AAGAAGATTTTGATATGCCTTACCTAG 57.434 33.333 0.00 0.00 0.00 3.02
674 695 0.179081 CCTTACCTAGGCGGACAAGC 60.179 60.000 9.30 0.00 37.17 4.01
675 696 0.535335 CTTACCTAGGCGGACAAGCA 59.465 55.000 9.30 0.00 39.27 3.91
676 697 0.248289 TTACCTAGGCGGACAAGCAC 59.752 55.000 9.30 0.00 39.27 4.40
677 698 0.901114 TACCTAGGCGGACAAGCACA 60.901 55.000 9.30 0.00 39.27 4.57
678 699 1.003839 CCTAGGCGGACAAGCACAA 60.004 57.895 0.00 0.00 39.27 3.33
679 700 1.298859 CCTAGGCGGACAAGCACAAC 61.299 60.000 0.00 0.00 39.27 3.32
680 701 0.602638 CTAGGCGGACAAGCACAACA 60.603 55.000 0.00 0.00 39.27 3.33
681 702 0.036164 TAGGCGGACAAGCACAACAT 59.964 50.000 0.00 0.00 39.27 2.71
682 703 0.036164 AGGCGGACAAGCACAACATA 59.964 50.000 0.00 0.00 39.27 2.29
683 704 0.168128 GGCGGACAAGCACAACATAC 59.832 55.000 0.00 0.00 39.27 2.39
684 705 0.179225 GCGGACAAGCACAACATACG 60.179 55.000 0.00 0.00 37.05 3.06
685 706 1.144969 CGGACAAGCACAACATACGT 58.855 50.000 0.00 0.00 0.00 3.57
686 707 2.330286 CGGACAAGCACAACATACGTA 58.670 47.619 0.00 0.00 0.00 3.57
687 708 2.091588 CGGACAAGCACAACATACGTAC 59.908 50.000 0.00 0.00 0.00 3.67
688 709 3.061322 GGACAAGCACAACATACGTACA 58.939 45.455 0.00 0.00 0.00 2.90
689 710 3.122948 GGACAAGCACAACATACGTACAG 59.877 47.826 0.00 0.00 0.00 2.74
690 711 2.478894 ACAAGCACAACATACGTACAGC 59.521 45.455 0.00 0.00 0.00 4.40
691 712 2.448926 AGCACAACATACGTACAGCA 57.551 45.000 0.00 0.00 0.00 4.41
692 713 2.337583 AGCACAACATACGTACAGCAG 58.662 47.619 0.00 0.00 0.00 4.24
693 714 1.201921 GCACAACATACGTACAGCAGC 60.202 52.381 0.00 0.00 0.00 5.25
694 715 1.059122 CACAACATACGTACAGCAGCG 59.941 52.381 0.00 0.00 0.00 5.18
695 716 1.336517 ACAACATACGTACAGCAGCGT 60.337 47.619 0.00 0.00 44.02 5.07
696 717 1.059122 CAACATACGTACAGCAGCGTG 59.941 52.381 0.00 0.00 41.68 5.34
697 718 0.242825 ACATACGTACAGCAGCGTGT 59.757 50.000 0.00 0.00 41.68 4.49
698 719 0.914551 CATACGTACAGCAGCGTGTC 59.085 55.000 0.00 0.00 41.68 3.67
699 720 0.522705 ATACGTACAGCAGCGTGTCG 60.523 55.000 0.00 7.60 41.68 4.35
719 740 4.675029 CCCGAGCACGACCCGTTT 62.675 66.667 4.70 0.00 38.32 3.60
720 741 2.663852 CCGAGCACGACCCGTTTT 60.664 61.111 4.70 0.00 38.32 2.43
721 742 2.549282 CGAGCACGACCCGTTTTG 59.451 61.111 0.00 0.00 38.32 2.44
722 743 2.241880 CGAGCACGACCCGTTTTGT 61.242 57.895 0.00 0.00 38.32 2.83
723 744 1.568025 GAGCACGACCCGTTTTGTC 59.432 57.895 0.00 0.00 38.32 3.18
724 745 0.878961 GAGCACGACCCGTTTTGTCT 60.879 55.000 0.00 0.00 38.32 3.41
725 746 0.390124 AGCACGACCCGTTTTGTCTA 59.610 50.000 0.00 0.00 38.32 2.59
726 747 1.202557 AGCACGACCCGTTTTGTCTAA 60.203 47.619 0.00 0.00 38.32 2.10
727 748 1.598601 GCACGACCCGTTTTGTCTAAA 59.401 47.619 0.00 0.00 38.32 1.85
728 749 2.031930 GCACGACCCGTTTTGTCTAAAA 59.968 45.455 0.00 0.00 38.32 1.52
729 750 3.487209 GCACGACCCGTTTTGTCTAAAAA 60.487 43.478 0.00 0.00 38.32 1.94
789 811 1.557651 GTGCCTTTCCTCGATCGTAC 58.442 55.000 15.94 0.00 0.00 3.67
826 856 2.260844 TGCTTTCCTCAACTCCACTG 57.739 50.000 0.00 0.00 0.00 3.66
829 859 0.250295 TTTCCTCAACTCCACTGCCG 60.250 55.000 0.00 0.00 0.00 5.69
877 927 2.835431 CCAGCCCGACCGATCTCT 60.835 66.667 0.00 0.00 0.00 3.10
878 928 2.427245 CCAGCCCGACCGATCTCTT 61.427 63.158 0.00 0.00 0.00 2.85
889 939 2.093447 ACCGATCTCTTGCCTGGTAAAG 60.093 50.000 0.00 2.06 0.00 1.85
891 941 2.293170 GATCTCTTGCCTGGTAAAGCC 58.707 52.381 0.00 0.00 37.90 4.35
957 1010 1.443702 CTGATGTTCACGGCGTCGA 60.444 57.895 20.03 8.96 40.11 4.20
989 1042 3.039526 AGGGGAGGGGAGGGAGAG 61.040 72.222 0.00 0.00 0.00 3.20
992 1045 4.144727 GGAGGGGAGGGAGAGCGA 62.145 72.222 0.00 0.00 0.00 4.93
1149 1202 2.033448 TCCGTGCCCACCATCAAC 59.967 61.111 0.00 0.00 0.00 3.18
1161 1214 1.341383 ACCATCAACTTCCTCATGGGC 60.341 52.381 0.00 0.00 40.27 5.36
1202 1255 3.900855 CAGCCATCTGGTGAGCAC 58.099 61.111 0.00 0.00 45.48 4.40
1228 1286 0.459489 GAGCACAGCCTTCTCGATCT 59.541 55.000 0.00 0.00 0.00 2.75
1235 1293 0.747255 GCCTTCTCGATCTGTGCCTA 59.253 55.000 0.00 0.00 0.00 3.93
1251 1309 1.353076 CCTACGGCGTTTTACTGACC 58.647 55.000 21.24 0.00 0.00 4.02
1253 1311 2.406130 CTACGGCGTTTTACTGACCAA 58.594 47.619 21.24 0.00 0.00 3.67
1266 1324 6.701145 TTACTGACCAATTTGTGTTGCTTA 57.299 33.333 0.00 0.00 0.00 3.09
1328 1387 8.589701 TCAAGTCATCTGTTAGTCCACTAATA 57.410 34.615 2.54 0.00 40.20 0.98
1346 1405 0.623324 TATCTTGGGAGTGGGTGGGG 60.623 60.000 0.00 0.00 0.00 4.96
1484 1612 2.886081 CAGATTCCTCTGTCCAGTTCG 58.114 52.381 0.00 0.00 43.35 3.95
1599 1765 4.012374 CCAATATGCGATTAGGCTTCCAT 58.988 43.478 0.00 0.00 0.00 3.41
1609 1775 6.603095 CGATTAGGCTTCCATATTTTAGTGC 58.397 40.000 0.00 0.00 0.00 4.40
1633 1799 7.335924 TGCTAAACCCTGCTTATTTACTTACTG 59.664 37.037 0.00 0.00 0.00 2.74
1639 1806 8.573885 ACCCTGCTTATTTACTTACTGTTTTTC 58.426 33.333 0.00 0.00 0.00 2.29
1655 1822 8.053026 ACTGTTTTTCTCTACTCTTAGCGATA 57.947 34.615 0.00 0.00 0.00 2.92
1683 6051 9.938280 TGTGTTGCTAACTACTACTTATTGATT 57.062 29.630 0.00 0.00 0.00 2.57
1704 6072 9.671279 TTGATTAATGATAATATGAGATGGCGT 57.329 29.630 0.00 0.00 31.83 5.68
1756 6124 3.264193 TCATCCTCATGCCACTTAACTGT 59.736 43.478 0.00 0.00 0.00 3.55
1757 6125 3.788227 TCCTCATGCCACTTAACTGTT 57.212 42.857 0.00 0.00 0.00 3.16
1758 6126 4.098914 TCCTCATGCCACTTAACTGTTT 57.901 40.909 0.00 0.00 0.00 2.83
1759 6127 4.469657 TCCTCATGCCACTTAACTGTTTT 58.530 39.130 0.00 0.00 0.00 2.43
1760 6128 4.892934 TCCTCATGCCACTTAACTGTTTTT 59.107 37.500 0.00 0.00 0.00 1.94
1968 6336 8.470040 TTCTTGGAGTTGATGTACGTTATAAC 57.530 34.615 5.47 5.47 0.00 1.89
2064 6435 3.428534 GCTTTAAAAAGGTTGTGATGGCG 59.571 43.478 4.71 0.00 36.53 5.69
2076 6447 2.212652 GTGATGGCGAATGACTGCATA 58.787 47.619 0.00 0.00 33.44 3.14
2101 6472 6.213600 AGGTGAGGAAGTTGAGAAATTAGCTA 59.786 38.462 0.00 0.00 0.00 3.32
2133 6504 4.223923 CCAGATGGAGGTGTTCTACTTCTT 59.776 45.833 0.00 0.00 38.39 2.52
2142 6513 7.660208 GGAGGTGTTCTACTTCTTGAAAATGTA 59.340 37.037 0.00 0.00 35.82 2.29
2319 6690 7.609532 GCTGGATTTCTTATGCAGAAGGTATAT 59.390 37.037 20.34 9.03 42.76 0.86
2356 6727 5.619981 GCATTGGTCCATGAACTACTGAAAC 60.620 44.000 0.00 0.00 0.00 2.78
2418 6792 3.935828 GTCATTCTTGAGCTAAGTGTCCC 59.064 47.826 0.00 0.00 37.65 4.46
2667 7170 2.355010 AGCTTGAACTGGCAAACTCT 57.645 45.000 0.00 0.00 0.00 3.24
2672 7175 4.319839 GCTTGAACTGGCAAACTCTCTTAC 60.320 45.833 0.00 0.00 0.00 2.34
2985 7492 8.304596 CCTAATCAGTGTCACAAGAACTTACTA 58.695 37.037 5.62 0.00 0.00 1.82
3075 7582 6.179756 ACATGCATGGTTCTGTAATTCTGTA 58.820 36.000 29.41 0.00 0.00 2.74
3132 8878 3.894920 TGTTGCATTGTACATGGAAACG 58.105 40.909 11.64 0.00 31.37 3.60
3138 8884 4.637968 CATTGTACATGGAAACGAACTCG 58.362 43.478 0.00 0.00 46.33 4.18
3145 8891 1.928503 TGGAAACGAACTCGACACAAC 59.071 47.619 6.05 0.00 43.02 3.32
3153 8899 3.245284 CGAACTCGACACAACTGTTCATT 59.755 43.478 10.76 0.00 43.02 2.57
3263 9009 1.076549 GGGTCTTGACATTGGCCCA 59.923 57.895 12.24 0.00 36.25 5.36
3377 9123 0.460284 CTGGCACCGATGTGAGTACC 60.460 60.000 0.00 0.00 45.76 3.34
3682 9428 0.180642 TGGCAAGACGTGTTTACCCA 59.819 50.000 10.71 8.07 0.00 4.51
3684 9430 1.589803 GCAAGACGTGTTTACCCAGT 58.410 50.000 0.00 0.00 0.00 4.00
3707 9453 0.746204 TGCGCCACTCTGTTGTTCAA 60.746 50.000 4.18 0.00 0.00 2.69
3794 9540 6.373495 TGTCAGACGAGCAGTAGTAAATAAGA 59.627 38.462 0.00 0.00 0.00 2.10
3847 9593 4.037446 TCTCGCACAAGCAAACCTTTATTT 59.963 37.500 0.00 0.00 42.27 1.40
3860 9606 7.060633 GCAAACCTTTATTTGTCGATGTAACAG 59.939 37.037 0.00 0.00 40.92 3.16
3865 9611 8.380644 CCTTTATTTGTCGATGTAACAGTGTAG 58.619 37.037 0.00 0.00 0.00 2.74
3877 9623 8.813643 ATGTAACAGTGTAGACTTCTGTAAAC 57.186 34.615 0.00 11.06 40.81 2.01
3918 9664 6.422400 GTGTTTGTTTTGAGTTCCTTTTGTGA 59.578 34.615 0.00 0.00 0.00 3.58
3933 9679 2.507407 TGTGAGAATAAAGGGGTGCC 57.493 50.000 0.00 0.00 0.00 5.01
4078 9849 8.122330 TGCATGTAAAATTTCATGACGAGATAC 58.878 33.333 19.00 3.97 42.52 2.24
4125 9896 1.200020 GGAACTTTGAGCATGAACGGG 59.800 52.381 0.00 0.00 0.00 5.28
4146 10121 1.269936 GCAAGTGCTGAAAAGCCACAT 60.270 47.619 0.00 0.00 38.21 3.21
4223 10198 8.487313 TTTACACACATGTACATTATGTCTCC 57.513 34.615 16.32 0.00 41.12 3.71
4242 10217 8.343168 TGTCTCCGGATGTATGTTTAATTTTT 57.657 30.769 3.57 0.00 0.00 1.94
4243 10218 8.455682 TGTCTCCGGATGTATGTTTAATTTTTC 58.544 33.333 3.57 0.00 0.00 2.29
4332 10312 1.269958 GGCCTCCCTTCAGCATTTTT 58.730 50.000 0.00 0.00 0.00 1.94
4336 10316 0.975887 TCCCTTCAGCATTTTTGGCC 59.024 50.000 0.00 0.00 0.00 5.36
4342 10322 2.911484 TCAGCATTTTTGGCCGTTTTT 58.089 38.095 0.00 0.00 0.00 1.94
4343 10323 2.611292 TCAGCATTTTTGGCCGTTTTTG 59.389 40.909 0.00 0.00 0.00 2.44
4350 10330 4.789977 GGCCGTTTTTGCCCATTT 57.210 50.000 0.00 0.00 43.33 2.32
4351 10331 3.917072 GGCCGTTTTTGCCCATTTA 57.083 47.368 0.00 0.00 43.33 1.40
4352 10332 2.171341 GGCCGTTTTTGCCCATTTAA 57.829 45.000 0.00 0.00 43.33 1.52
4353 10333 2.495084 GGCCGTTTTTGCCCATTTAAA 58.505 42.857 0.00 0.00 43.33 1.52
4354 10334 2.879026 GGCCGTTTTTGCCCATTTAAAA 59.121 40.909 0.00 0.00 43.33 1.52
4355 10335 3.315470 GGCCGTTTTTGCCCATTTAAAAA 59.685 39.130 0.00 0.00 43.33 1.94
4380 10368 4.010667 TCTAGTGGTATTTTTGTGCGGT 57.989 40.909 0.00 0.00 0.00 5.68
4424 10412 4.569943 TCTGGAACATCTTGCTGAAGTAC 58.430 43.478 0.00 0.00 38.20 2.73
4426 10414 4.713553 TGGAACATCTTGCTGAAGTACAA 58.286 39.130 0.00 0.00 0.00 2.41
4436 10424 5.784578 TGCTGAAGTACAAGTCAGACTAA 57.215 39.130 19.66 0.00 43.32 2.24
4437 10425 6.346477 TGCTGAAGTACAAGTCAGACTAAT 57.654 37.500 19.66 0.00 43.32 1.73
4449 10437 7.606839 ACAAGTCAGACTAATTAACCTTAAGGC 59.393 37.037 21.92 1.63 39.32 4.35
4450 10438 6.651086 AGTCAGACTAATTAACCTTAAGGCC 58.349 40.000 21.92 0.00 39.32 5.19
4451 10439 6.214819 AGTCAGACTAATTAACCTTAAGGCCA 59.785 38.462 21.92 6.48 39.32 5.36
4452 10440 6.882678 GTCAGACTAATTAACCTTAAGGCCAA 59.117 38.462 21.92 15.25 39.32 4.52
4453 10441 6.882678 TCAGACTAATTAACCTTAAGGCCAAC 59.117 38.462 21.92 3.74 39.32 3.77
4454 10442 6.884836 CAGACTAATTAACCTTAAGGCCAACT 59.115 38.462 21.92 8.04 39.32 3.16
4455 10443 7.065923 CAGACTAATTAACCTTAAGGCCAACTC 59.934 40.741 21.92 6.21 39.32 3.01
4456 10444 6.185511 ACTAATTAACCTTAAGGCCAACTCC 58.814 40.000 21.92 0.00 39.32 3.85
4457 10445 4.668138 ATTAACCTTAAGGCCAACTCCA 57.332 40.909 21.92 0.00 39.32 3.86
4458 10446 2.287977 AACCTTAAGGCCAACTCCAC 57.712 50.000 21.92 0.00 39.32 4.02
4459 10447 1.446016 ACCTTAAGGCCAACTCCACT 58.554 50.000 21.92 0.00 39.32 4.00
4460 10448 1.073923 ACCTTAAGGCCAACTCCACTG 59.926 52.381 21.92 0.00 39.32 3.66
4461 10449 1.168714 CTTAAGGCCAACTCCACTGC 58.831 55.000 5.01 0.00 0.00 4.40
4462 10450 0.476338 TTAAGGCCAACTCCACTGCA 59.524 50.000 5.01 0.00 0.00 4.41
4463 10451 0.250727 TAAGGCCAACTCCACTGCAC 60.251 55.000 5.01 0.00 0.00 4.57
4464 10452 3.357079 GGCCAACTCCACTGCACG 61.357 66.667 0.00 0.00 0.00 5.34
4465 10453 2.280797 GCCAACTCCACTGCACGA 60.281 61.111 0.00 0.00 0.00 4.35
4466 10454 2.607892 GCCAACTCCACTGCACGAC 61.608 63.158 0.00 0.00 0.00 4.34
4467 10455 1.961277 CCAACTCCACTGCACGACC 60.961 63.158 0.00 0.00 0.00 4.79
4468 10456 1.961277 CAACTCCACTGCACGACCC 60.961 63.158 0.00 0.00 0.00 4.46
4469 10457 2.140792 AACTCCACTGCACGACCCT 61.141 57.895 0.00 0.00 0.00 4.34
4470 10458 0.830444 AACTCCACTGCACGACCCTA 60.830 55.000 0.00 0.00 0.00 3.53
4471 10459 0.614979 ACTCCACTGCACGACCCTAT 60.615 55.000 0.00 0.00 0.00 2.57
4472 10460 0.103208 CTCCACTGCACGACCCTATC 59.897 60.000 0.00 0.00 0.00 2.08
4473 10461 1.144057 CCACTGCACGACCCTATCC 59.856 63.158 0.00 0.00 0.00 2.59
4474 10462 1.330655 CCACTGCACGACCCTATCCT 61.331 60.000 0.00 0.00 0.00 3.24
4475 10463 0.179100 CACTGCACGACCCTATCCTG 60.179 60.000 0.00 0.00 0.00 3.86
4476 10464 0.614979 ACTGCACGACCCTATCCTGT 60.615 55.000 0.00 0.00 0.00 4.00
4477 10465 0.103208 CTGCACGACCCTATCCTGTC 59.897 60.000 0.00 0.00 0.00 3.51
4478 10466 1.327690 TGCACGACCCTATCCTGTCC 61.328 60.000 0.00 0.00 0.00 4.02
4479 10467 1.734137 CACGACCCTATCCTGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
4480 10468 2.125961 ACGACCCTATCCTGTCCGC 61.126 63.158 0.00 0.00 0.00 5.54
4481 10469 2.857744 CGACCCTATCCTGTCCGCC 61.858 68.421 0.00 0.00 0.00 6.13
4482 10470 2.446036 ACCCTATCCTGTCCGCCC 60.446 66.667 0.00 0.00 0.00 6.13
4483 10471 3.242291 CCCTATCCTGTCCGCCCC 61.242 72.222 0.00 0.00 0.00 5.80
4484 10472 3.242291 CCTATCCTGTCCGCCCCC 61.242 72.222 0.00 0.00 0.00 5.40
4485 10473 3.616721 CTATCCTGTCCGCCCCCG 61.617 72.222 0.00 0.00 0.00 5.73
4486 10474 4.468769 TATCCTGTCCGCCCCCGT 62.469 66.667 0.00 0.00 0.00 5.28
4492 10480 4.419921 GTCCGCCCCCGTCCATTT 62.420 66.667 0.00 0.00 0.00 2.32
4493 10481 4.418328 TCCGCCCCCGTCCATTTG 62.418 66.667 0.00 0.00 0.00 2.32
4499 10487 4.977393 CCCGTCCATTTGGGGTAG 57.023 61.111 0.00 0.00 42.05 3.18
4500 10488 2.303043 CCCGTCCATTTGGGGTAGA 58.697 57.895 0.00 0.00 42.05 2.59
4501 10489 0.621609 CCCGTCCATTTGGGGTAGAA 59.378 55.000 0.00 0.00 42.05 2.10
4502 10490 1.004979 CCCGTCCATTTGGGGTAGAAA 59.995 52.381 0.00 0.00 42.05 2.52
4503 10491 2.365582 CCGTCCATTTGGGGTAGAAAG 58.634 52.381 0.00 0.00 37.22 2.62
4504 10492 2.365582 CGTCCATTTGGGGTAGAAAGG 58.634 52.381 0.00 0.00 37.22 3.11
4505 10493 2.026636 CGTCCATTTGGGGTAGAAAGGA 60.027 50.000 0.00 0.00 37.22 3.36
4506 10494 3.353557 GTCCATTTGGGGTAGAAAGGAC 58.646 50.000 0.00 0.00 37.70 3.85
4507 10495 2.990284 TCCATTTGGGGTAGAAAGGACA 59.010 45.455 0.00 0.00 37.22 4.02
4508 10496 3.399644 TCCATTTGGGGTAGAAAGGACAA 59.600 43.478 0.00 0.00 37.22 3.18
4509 10497 4.140900 TCCATTTGGGGTAGAAAGGACAAA 60.141 41.667 0.00 0.00 37.22 2.83
4510 10498 4.777366 CCATTTGGGGTAGAAAGGACAAAT 59.223 41.667 0.00 0.00 38.60 2.32
4511 10499 5.723295 CATTTGGGGTAGAAAGGACAAATG 58.277 41.667 11.85 11.85 44.55 2.32
4512 10500 4.733077 TTGGGGTAGAAAGGACAAATGA 57.267 40.909 0.00 0.00 0.00 2.57
4513 10501 4.301072 TGGGGTAGAAAGGACAAATGAG 57.699 45.455 0.00 0.00 0.00 2.90
4514 10502 3.913799 TGGGGTAGAAAGGACAAATGAGA 59.086 43.478 0.00 0.00 0.00 3.27
4515 10503 4.262617 GGGGTAGAAAGGACAAATGAGAC 58.737 47.826 0.00 0.00 0.00 3.36
4516 10504 3.933332 GGGTAGAAAGGACAAATGAGACG 59.067 47.826 0.00 0.00 0.00 4.18
4517 10505 3.933332 GGTAGAAAGGACAAATGAGACGG 59.067 47.826 0.00 0.00 0.00 4.79
4518 10506 3.771577 AGAAAGGACAAATGAGACGGT 57.228 42.857 0.00 0.00 0.00 4.83
4519 10507 3.665190 AGAAAGGACAAATGAGACGGTC 58.335 45.455 0.00 0.00 0.00 4.79
4524 10512 1.459592 GACAAATGAGACGGTCCAACG 59.540 52.381 4.14 0.00 40.31 4.10
4525 10513 0.165944 CAAATGAGACGGTCCAACGC 59.834 55.000 4.14 0.00 37.37 4.84
4526 10514 0.250124 AAATGAGACGGTCCAACGCA 60.250 50.000 4.14 0.00 37.37 5.24
4527 10515 0.949105 AATGAGACGGTCCAACGCAC 60.949 55.000 4.14 0.00 37.37 5.34
4528 10516 3.103911 GAGACGGTCCAACGCACG 61.104 66.667 4.14 0.00 37.37 5.34
4529 10517 3.547249 GAGACGGTCCAACGCACGA 62.547 63.158 4.14 0.00 37.37 4.35
4530 10518 3.400590 GACGGTCCAACGCACGAC 61.401 66.667 0.00 0.00 37.37 4.34
4544 10532 4.530857 CGACGGCCTGGACCCATC 62.531 72.222 0.00 0.00 0.00 3.51
4545 10533 3.083997 GACGGCCTGGACCCATCT 61.084 66.667 0.00 0.00 0.00 2.90
4546 10534 2.610859 ACGGCCTGGACCCATCTT 60.611 61.111 0.00 0.00 0.00 2.40
4547 10535 2.124570 CGGCCTGGACCCATCTTG 60.125 66.667 0.00 0.00 0.00 3.02
4548 10536 2.971598 CGGCCTGGACCCATCTTGT 61.972 63.158 0.00 0.00 0.00 3.16
4549 10537 1.077429 GGCCTGGACCCATCTTGTC 60.077 63.158 0.00 0.00 0.00 3.18
4554 10542 3.644861 GGACCCATCTTGTCCGTTT 57.355 52.632 0.00 0.00 42.63 3.60
4555 10543 1.905637 GGACCCATCTTGTCCGTTTT 58.094 50.000 0.00 0.00 42.63 2.43
4556 10544 1.539827 GGACCCATCTTGTCCGTTTTG 59.460 52.381 0.00 0.00 42.63 2.44
4557 10545 2.227194 GACCCATCTTGTCCGTTTTGT 58.773 47.619 0.00 0.00 0.00 2.83
4558 10546 1.953686 ACCCATCTTGTCCGTTTTGTG 59.046 47.619 0.00 0.00 0.00 3.33
4559 10547 1.953686 CCCATCTTGTCCGTTTTGTGT 59.046 47.619 0.00 0.00 0.00 3.72
4560 10548 2.031157 CCCATCTTGTCCGTTTTGTGTC 60.031 50.000 0.00 0.00 0.00 3.67
4561 10549 2.031157 CCATCTTGTCCGTTTTGTGTCC 60.031 50.000 0.00 0.00 0.00 4.02
4562 10550 2.404923 TCTTGTCCGTTTTGTGTCCA 57.595 45.000 0.00 0.00 0.00 4.02
4563 10551 2.011222 TCTTGTCCGTTTTGTGTCCAC 58.989 47.619 0.00 0.00 0.00 4.02
4564 10552 0.727970 TTGTCCGTTTTGTGTCCACG 59.272 50.000 0.00 0.00 0.00 4.94
4565 10553 1.010462 GTCCGTTTTGTGTCCACGC 60.010 57.895 0.00 0.00 32.43 5.34
4566 10554 2.181521 TCCGTTTTGTGTCCACGCC 61.182 57.895 0.00 0.00 32.43 5.68
4567 10555 2.052590 CGTTTTGTGTCCACGCCG 60.053 61.111 0.00 0.00 0.00 6.46
4568 10556 2.526993 CGTTTTGTGTCCACGCCGA 61.527 57.895 0.00 0.00 0.00 5.54
4569 10557 1.010462 GTTTTGTGTCCACGCCGAC 60.010 57.895 0.00 0.00 0.00 4.79
4570 10558 2.181521 TTTTGTGTCCACGCCGACC 61.182 57.895 0.00 0.00 31.35 4.79
4571 10559 4.612412 TTGTGTCCACGCCGACCC 62.612 66.667 0.00 0.00 31.35 4.46
4573 10561 4.388499 GTGTCCACGCCGACCCAT 62.388 66.667 0.00 0.00 31.35 4.00
4574 10562 3.632080 TGTCCACGCCGACCCATT 61.632 61.111 0.00 0.00 31.35 3.16
4575 10563 2.359478 GTCCACGCCGACCCATTT 60.359 61.111 0.00 0.00 0.00 2.32
4576 10564 2.046700 TCCACGCCGACCCATTTC 60.047 61.111 0.00 0.00 0.00 2.17
4577 10565 3.496131 CCACGCCGACCCATTTCG 61.496 66.667 0.00 0.00 38.80 3.46
4578 10566 2.433491 CACGCCGACCCATTTCGA 60.433 61.111 0.00 0.00 41.78 3.71
4579 10567 2.125673 ACGCCGACCCATTTCGAG 60.126 61.111 0.00 0.00 41.78 4.04
4580 10568 3.564027 CGCCGACCCATTTCGAGC 61.564 66.667 0.00 0.00 41.78 5.03
4581 10569 3.564027 GCCGACCCATTTCGAGCG 61.564 66.667 0.00 0.00 41.78 5.03
4582 10570 3.564027 CCGACCCATTTCGAGCGC 61.564 66.667 0.00 0.00 41.78 5.92
4583 10571 2.813474 CGACCCATTTCGAGCGCA 60.813 61.111 11.47 0.00 41.78 6.09
4584 10572 2.387445 CGACCCATTTCGAGCGCAA 61.387 57.895 11.47 0.00 41.78 4.85
4585 10573 1.873165 GACCCATTTCGAGCGCAAA 59.127 52.632 11.47 1.09 0.00 3.68
4586 10574 0.451783 GACCCATTTCGAGCGCAAAT 59.548 50.000 11.47 3.98 0.00 2.32
4587 10575 0.887933 ACCCATTTCGAGCGCAAATT 59.112 45.000 11.47 0.00 0.00 1.82
4588 10576 1.272212 ACCCATTTCGAGCGCAAATTT 59.728 42.857 11.47 0.00 0.00 1.82
4589 10577 1.655099 CCCATTTCGAGCGCAAATTTG 59.345 47.619 11.47 14.03 0.00 2.32
4602 10590 1.601430 CAAATTTGCACCGGTTTTGGG 59.399 47.619 17.32 2.92 0.00 4.12
4603 10591 0.833949 AATTTGCACCGGTTTTGGGT 59.166 45.000 2.97 0.00 38.65 4.51
4604 10592 0.391228 ATTTGCACCGGTTTTGGGTC 59.609 50.000 2.97 0.00 34.97 4.46
4605 10593 2.005960 TTTGCACCGGTTTTGGGTCG 62.006 55.000 2.97 0.00 34.97 4.79
4606 10594 4.337060 GCACCGGTTTTGGGTCGC 62.337 66.667 2.97 0.00 34.97 5.19
4607 10595 4.020378 CACCGGTTTTGGGTCGCG 62.020 66.667 2.97 0.00 34.97 5.87
4623 10611 4.973055 CGGCGGACACCAAACGGA 62.973 66.667 0.00 0.00 0.00 4.69
4624 10612 3.351416 GGCGGACACCAAACGGAC 61.351 66.667 0.00 0.00 0.00 4.79
4625 10613 3.708734 GCGGACACCAAACGGACG 61.709 66.667 0.00 0.00 0.00 4.79
4626 10614 3.708734 CGGACACCAAACGGACGC 61.709 66.667 0.00 0.00 0.00 5.19
4627 10615 3.708734 GGACACCAAACGGACGCG 61.709 66.667 3.53 3.53 0.00 6.01
4628 10616 4.364409 GACACCAAACGGACGCGC 62.364 66.667 5.73 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 58 2.504175 TGGCTCCTAGTTGTAATGGTCC 59.496 50.000 0.00 0.00 0.00 4.46
52 60 2.092914 GCTGGCTCCTAGTTGTAATGGT 60.093 50.000 0.00 0.00 0.00 3.55
54 62 2.939103 GTGCTGGCTCCTAGTTGTAATG 59.061 50.000 0.00 0.00 0.00 1.90
78 88 0.533978 TGGCTTTCGTGCTGTTGCTA 60.534 50.000 0.00 0.00 40.48 3.49
79 89 1.789078 CTGGCTTTCGTGCTGTTGCT 61.789 55.000 0.00 0.00 40.48 3.91
84 94 2.030893 TCAAAATCTGGCTTTCGTGCTG 60.031 45.455 0.00 0.00 0.00 4.41
101 112 2.223923 CGGATGCTTTTGTTGGGTCAAA 60.224 45.455 0.00 0.00 35.83 2.69
200 216 2.359169 GGCGGAGATGGTCAGGTCA 61.359 63.158 0.00 0.00 0.00 4.02
238 254 2.904434 GGTCTACAACAAGGAGAAGGGA 59.096 50.000 0.00 0.00 0.00 4.20
256 272 0.250727 TTTGCTGTACTGGGCAGGTC 60.251 55.000 1.65 0.00 39.68 3.85
306 322 8.560576 TTTGAGAAAAAGCAGATTAAAACTCG 57.439 30.769 0.00 0.00 0.00 4.18
320 336 4.672409 ACCGAGCAACTTTTGAGAAAAAG 58.328 39.130 8.92 8.92 43.49 2.27
458 475 1.367346 TGGCATTGGGGACTCACTTA 58.633 50.000 0.00 0.00 0.00 2.24
463 480 1.152673 GGGATGGCATTGGGGACTC 60.153 63.158 0.00 0.00 0.00 3.36
512 529 4.565022 ACATTTATTTTTCACTTGCCCGG 58.435 39.130 0.00 0.00 0.00 5.73
513 530 5.345741 CAGACATTTATTTTTCACTTGCCCG 59.654 40.000 0.00 0.00 0.00 6.13
514 531 5.639082 CCAGACATTTATTTTTCACTTGCCC 59.361 40.000 0.00 0.00 0.00 5.36
515 532 6.454795 TCCAGACATTTATTTTTCACTTGCC 58.545 36.000 0.00 0.00 0.00 4.52
548 565 4.202141 CCAAGTGTCCTTTTTGCAATGAGA 60.202 41.667 0.00 0.00 0.00 3.27
640 661 8.329203 CCTAGGTAAGGCATATCAAAATCTTC 57.671 38.462 0.00 0.00 38.97 2.87
656 677 0.535335 TGCTTGTCCGCCTAGGTAAG 59.465 55.000 11.31 8.69 41.99 2.34
657 678 0.248289 GTGCTTGTCCGCCTAGGTAA 59.752 55.000 11.31 0.00 41.99 2.85
658 679 0.901114 TGTGCTTGTCCGCCTAGGTA 60.901 55.000 11.31 0.00 41.99 3.08
659 680 1.764571 TTGTGCTTGTCCGCCTAGGT 61.765 55.000 11.31 0.00 41.99 3.08
660 681 1.003839 TTGTGCTTGTCCGCCTAGG 60.004 57.895 3.67 3.67 42.97 3.02
661 682 0.602638 TGTTGTGCTTGTCCGCCTAG 60.603 55.000 0.00 0.00 0.00 3.02
662 683 0.036164 ATGTTGTGCTTGTCCGCCTA 59.964 50.000 0.00 0.00 0.00 3.93
663 684 0.036164 TATGTTGTGCTTGTCCGCCT 59.964 50.000 0.00 0.00 0.00 5.52
664 685 0.168128 GTATGTTGTGCTTGTCCGCC 59.832 55.000 0.00 0.00 0.00 6.13
665 686 0.179225 CGTATGTTGTGCTTGTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
666 687 1.144969 ACGTATGTTGTGCTTGTCCG 58.855 50.000 0.00 0.00 0.00 4.79
667 688 3.061322 TGTACGTATGTTGTGCTTGTCC 58.939 45.455 0.00 0.00 0.00 4.02
668 689 3.423123 GCTGTACGTATGTTGTGCTTGTC 60.423 47.826 0.00 0.00 0.00 3.18
669 690 2.478894 GCTGTACGTATGTTGTGCTTGT 59.521 45.455 0.00 0.00 0.00 3.16
670 691 2.478514 TGCTGTACGTATGTTGTGCTTG 59.521 45.455 0.00 0.00 0.00 4.01
671 692 2.736721 CTGCTGTACGTATGTTGTGCTT 59.263 45.455 0.00 0.00 0.00 3.91
672 693 2.337583 CTGCTGTACGTATGTTGTGCT 58.662 47.619 0.00 0.00 0.00 4.40
673 694 1.201921 GCTGCTGTACGTATGTTGTGC 60.202 52.381 0.00 0.00 0.00 4.57
674 695 1.059122 CGCTGCTGTACGTATGTTGTG 59.941 52.381 0.00 0.00 0.00 3.33
675 696 1.336517 ACGCTGCTGTACGTATGTTGT 60.337 47.619 0.00 0.00 41.48 3.32
676 697 1.059122 CACGCTGCTGTACGTATGTTG 59.941 52.381 0.00 0.00 41.32 3.33
677 698 1.336517 ACACGCTGCTGTACGTATGTT 60.337 47.619 0.00 0.00 41.32 2.71
678 699 0.242825 ACACGCTGCTGTACGTATGT 59.757 50.000 0.00 0.00 41.32 2.29
679 700 0.914551 GACACGCTGCTGTACGTATG 59.085 55.000 0.00 0.00 41.32 2.39
680 701 0.522705 CGACACGCTGCTGTACGTAT 60.523 55.000 0.00 0.00 41.32 3.06
681 702 1.154357 CGACACGCTGCTGTACGTA 60.154 57.895 0.00 0.00 41.32 3.57
682 703 2.428569 CGACACGCTGCTGTACGT 60.429 61.111 0.00 0.00 44.75 3.57
705 726 0.878961 AGACAAAACGGGTCGTGCTC 60.879 55.000 0.00 0.00 39.99 4.26
706 727 0.390124 TAGACAAAACGGGTCGTGCT 59.610 50.000 0.00 0.00 39.99 4.40
707 728 1.219646 TTAGACAAAACGGGTCGTGC 58.780 50.000 0.00 0.00 39.99 5.34
708 729 3.948196 TTTTAGACAAAACGGGTCGTG 57.052 42.857 0.00 0.00 39.99 4.35
737 758 4.210331 TGAGCTTCTGCCTTTCTCTTTTT 58.790 39.130 0.00 0.00 40.80 1.94
739 760 3.410508 CTGAGCTTCTGCCTTTCTCTTT 58.589 45.455 0.00 0.00 40.80 2.52
789 811 3.989698 AAGCGGCGGTGTGATCGAG 62.990 63.158 14.17 0.00 0.00 4.04
839 873 0.108804 GGTGATTTCAGTCGCGAGGA 60.109 55.000 10.24 7.86 0.00 3.71
914 964 2.046023 CGCAGAGGAACCATGGCA 60.046 61.111 13.04 0.00 0.00 4.92
957 1010 1.079073 CCCTCCCCTGCACCAAATT 59.921 57.895 0.00 0.00 0.00 1.82
989 1042 2.174319 GTCGGCATTTCCTCCTCGC 61.174 63.158 0.00 0.00 0.00 5.03
991 1044 0.035439 TTGGTCGGCATTTCCTCCTC 60.035 55.000 0.00 0.00 0.00 3.71
992 1045 0.035056 CTTGGTCGGCATTTCCTCCT 60.035 55.000 0.00 0.00 0.00 3.69
1149 1202 1.755783 GCCCTTGCCCATGAGGAAG 60.756 63.158 1.22 1.22 38.24 3.46
1161 1214 2.361610 ATGACCTTGGCGCCCTTG 60.362 61.111 26.77 14.51 0.00 3.61
1196 1249 1.005275 GTGCTCTGCTCAGTGCTCA 60.005 57.895 20.17 3.47 45.29 4.26
1197 1250 1.005275 TGTGCTCTGCTCAGTGCTC 60.005 57.895 20.17 17.53 45.29 4.26
1198 1251 1.004799 CTGTGCTCTGCTCAGTGCT 60.005 57.895 20.17 0.00 45.29 4.40
1199 1252 3.563842 CTGTGCTCTGCTCAGTGC 58.436 61.111 14.81 14.81 42.75 4.40
1216 1274 0.747255 TAGGCACAGATCGAGAAGGC 59.253 55.000 0.00 0.00 0.00 4.35
1235 1293 1.886886 ATTGGTCAGTAAAACGCCGT 58.113 45.000 0.00 0.00 0.00 5.68
1251 1309 4.682860 CCTCAGCTTAAGCAACACAAATTG 59.317 41.667 28.39 14.56 45.16 2.32
1253 1311 3.256631 CCCTCAGCTTAAGCAACACAAAT 59.743 43.478 28.39 2.88 45.16 2.32
1266 1324 1.004044 CCAATCTGACACCCTCAGCTT 59.996 52.381 0.00 0.00 45.64 3.74
1310 1369 7.789831 TCCCAAGATATTAGTGGACTAACAGAT 59.210 37.037 1.31 0.00 40.81 2.90
1328 1387 1.930656 CCCCACCCACTCCCAAGAT 60.931 63.158 0.00 0.00 0.00 2.40
1350 1409 0.178885 ACTAACAGGCTACCCACCCA 60.179 55.000 0.00 0.00 0.00 4.51
1445 1573 5.416271 TCTGTTCTGTATGAAAGGTACCC 57.584 43.478 8.74 0.00 36.30 3.69
1468 1596 1.068588 CACACGAACTGGACAGAGGAA 59.931 52.381 6.29 0.00 0.00 3.36
1484 1612 7.240674 TCGACATATACAAAAGCAATTCACAC 58.759 34.615 0.00 0.00 0.00 3.82
1535 1664 5.933187 TTAGCTCGCACTTGAACAAATTA 57.067 34.783 0.00 0.00 0.00 1.40
1599 1765 8.817092 AATAAGCAGGGTTTAGCACTAAAATA 57.183 30.769 4.48 0.00 36.86 1.40
1609 1775 8.788325 ACAGTAAGTAAATAAGCAGGGTTTAG 57.212 34.615 0.00 0.00 0.00 1.85
1633 1799 9.303537 ACATTATCGCTAAGAGTAGAGAAAAAC 57.696 33.333 0.00 0.00 39.28 2.43
1639 1806 6.143118 GCAACACATTATCGCTAAGAGTAGAG 59.857 42.308 0.00 0.00 0.00 2.43
1655 1822 9.938280 TCAATAAGTAGTAGTTAGCAACACATT 57.062 29.630 3.89 0.00 0.00 2.71
1683 6051 7.181569 TCCACGCCATCTCATATTATCATTA 57.818 36.000 0.00 0.00 0.00 1.90
1689 6057 2.899900 AGCTCCACGCCATCTCATATTA 59.100 45.455 0.00 0.00 40.39 0.98
1704 6072 3.195610 ACATTTCTCACGATACAGCTCCA 59.804 43.478 0.00 0.00 0.00 3.86
1715 6083 3.320626 TGAGCTCTGAACATTTCTCACG 58.679 45.455 16.19 0.00 0.00 4.35
1726 6094 1.140452 GGCATGAGGATGAGCTCTGAA 59.860 52.381 16.19 0.00 0.00 3.02
1775 6143 8.822855 GGGTTGGTTTTAAGTGTTAAAATTCAG 58.177 33.333 7.62 0.00 44.25 3.02
1869 6237 2.282887 GGCCGGCCCTGAAAAGAA 60.283 61.111 36.64 0.00 0.00 2.52
1992 6360 2.424956 CAGCCAGGGTTTCAGATTAAGC 59.575 50.000 0.00 0.00 0.00 3.09
2064 6435 3.827008 TCCTCACCTATGCAGTCATTC 57.173 47.619 0.00 0.00 34.22 2.67
2076 6447 5.013599 AGCTAATTTCTCAACTTCCTCACCT 59.986 40.000 0.00 0.00 0.00 4.00
2101 6472 2.026822 CACCTCCATCTGGTAAAGCAGT 60.027 50.000 8.87 0.00 35.80 4.40
2133 6504 8.602424 TCCTCCTTGTAGAATCTTACATTTTCA 58.398 33.333 0.00 0.00 33.81 2.69
2142 6513 7.978925 TCTTTTCTTCCTCCTTGTAGAATCTT 58.021 34.615 0.00 0.00 0.00 2.40
2319 6690 2.163412 GACCAATGCAACTTCGGCAATA 59.837 45.455 0.00 0.00 45.60 1.90
2320 6691 0.968405 ACCAATGCAACTTCGGCAAT 59.032 45.000 0.00 0.00 45.60 3.56
2356 6727 4.751060 TGTAAATAGTAGCAGTGGAACGG 58.249 43.478 0.00 0.00 45.86 4.44
2391 6765 5.641209 ACACTTAGCTCAAGAATGACATCAC 59.359 40.000 0.00 0.00 37.71 3.06
2667 7170 2.166459 CGACTTGGCCATCTCAGTAAGA 59.834 50.000 6.09 0.00 38.72 2.10
2672 7175 1.649664 CTTCGACTTGGCCATCTCAG 58.350 55.000 6.09 2.68 0.00 3.35
2678 7181 3.646715 CCCCCTTCGACTTGGCCA 61.647 66.667 0.00 0.00 0.00 5.36
2827 7332 1.667830 GCGGGGCAAAAGCCTTTTC 60.668 57.895 0.00 0.00 0.00 2.29
2871 7377 7.247456 TGTACCTGACTTGTATGAATGGTTA 57.753 36.000 0.00 0.00 0.00 2.85
2935 7441 7.069085 AGGATCAAATAGTACTTGCATTGCATT 59.931 33.333 12.95 5.36 38.76 3.56
2985 7492 2.905415 TCTTTGGGTGCAGATTCCAT 57.095 45.000 0.00 0.00 0.00 3.41
3075 7582 8.377799 TGATACAGATAATGCCAGACATGTATT 58.622 33.333 0.00 0.00 39.60 1.89
3129 8875 2.288961 ACAGTTGTGTCGAGTTCGTT 57.711 45.000 1.07 0.00 40.80 3.85
3132 8878 4.034048 ACAATGAACAGTTGTGTCGAGTTC 59.966 41.667 0.00 4.91 38.31 3.01
3138 8884 4.992688 TCCAAACAATGAACAGTTGTGTC 58.007 39.130 0.00 0.00 39.57 3.67
3145 8891 5.458041 ACTCCATTCCAAACAATGAACAG 57.542 39.130 0.00 0.00 36.03 3.16
3153 8899 6.350110 GCTAGCAAATAACTCCATTCCAAACA 60.350 38.462 10.63 0.00 0.00 2.83
3365 9111 3.615110 GCTGGATATGGGTACTCACATCG 60.615 52.174 7.90 0.00 38.73 3.84
3377 9123 5.371526 AGAAAGTACATGTGCTGGATATGG 58.628 41.667 17.67 0.00 0.00 2.74
3682 9428 2.356313 CAGAGTGGCGCAACGACT 60.356 61.111 9.79 10.46 40.48 4.18
3684 9430 2.108157 AACAGAGTGGCGCAACGA 59.892 55.556 9.79 0.00 0.00 3.85
3707 9453 1.610624 CGCATCTGTACACCAAGGGTT 60.611 52.381 0.00 0.00 31.02 4.11
3847 9593 5.472478 AGAAGTCTACACTGTTACATCGACA 59.528 40.000 0.00 0.00 31.06 4.35
3860 9606 5.120830 CCATGCAGTTTACAGAAGTCTACAC 59.879 44.000 0.00 0.00 0.00 2.90
3865 9611 3.077359 AGCCATGCAGTTTACAGAAGTC 58.923 45.455 0.00 0.00 0.00 3.01
3877 9623 1.241990 ACACAGCTCAAGCCATGCAG 61.242 55.000 0.00 0.00 43.38 4.41
3918 9664 2.597578 AAACGGCACCCCTTTATTCT 57.402 45.000 0.00 0.00 0.00 2.40
3933 9679 1.142474 AAACGCCCTACTCGAAAACG 58.858 50.000 0.00 0.00 0.00 3.60
4074 9845 3.878245 GCAGCTCGCAATTTAAGGTATC 58.122 45.455 3.64 0.00 41.79 2.24
4105 9876 1.200020 CCCGTTCATGCTCAAAGTTCC 59.800 52.381 0.00 0.00 0.00 3.62
4146 10121 6.919721 AGAGCTACACAAAGAAAAACAAACA 58.080 32.000 0.00 0.00 0.00 2.83
4285 10262 3.306641 CCATGGAGGCGGAATTTGAAAAA 60.307 43.478 5.56 0.00 0.00 1.94
4286 10263 2.233431 CCATGGAGGCGGAATTTGAAAA 59.767 45.455 5.56 0.00 0.00 2.29
4287 10264 1.824230 CCATGGAGGCGGAATTTGAAA 59.176 47.619 5.56 0.00 0.00 2.69
4299 10276 4.247380 GGCCGAGCTCCATGGAGG 62.247 72.222 36.92 25.05 42.19 4.30
4300 10277 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
4301 10278 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
4320 10300 2.153366 AACGGCCAAAAATGCTGAAG 57.847 45.000 2.24 0.00 38.49 3.02
4352 10332 9.567848 CGCACAAAAATACCACTAGATATTTTT 57.432 29.630 19.62 19.62 45.35 1.94
4353 10333 8.188139 CCGCACAAAAATACCACTAGATATTTT 58.812 33.333 13.56 13.56 40.86 1.82
4354 10334 7.338449 ACCGCACAAAAATACCACTAGATATTT 59.662 33.333 0.00 1.48 33.40 1.40
4355 10335 6.826741 ACCGCACAAAAATACCACTAGATATT 59.173 34.615 0.00 0.00 0.00 1.28
4356 10336 6.354130 ACCGCACAAAAATACCACTAGATAT 58.646 36.000 0.00 0.00 0.00 1.63
4357 10337 5.736813 ACCGCACAAAAATACCACTAGATA 58.263 37.500 0.00 0.00 0.00 1.98
4358 10338 4.585879 ACCGCACAAAAATACCACTAGAT 58.414 39.130 0.00 0.00 0.00 1.98
4366 10354 6.032042 CGTTTTGATAGACCGCACAAAAATAC 59.968 38.462 0.00 0.00 41.54 1.89
4380 10368 7.412063 CAGATGATGCATTTCGTTTTGATAGA 58.588 34.615 0.00 0.00 0.00 1.98
4424 10412 7.065923 GGCCTTAAGGTTAATTAGTCTGACTTG 59.934 40.741 22.55 0.00 37.57 3.16
4426 10414 6.214819 TGGCCTTAAGGTTAATTAGTCTGACT 59.785 38.462 22.55 15.57 37.57 3.41
4436 10424 4.044191 AGTGGAGTTGGCCTTAAGGTTAAT 59.956 41.667 22.55 7.73 37.57 1.40
4437 10425 3.396611 AGTGGAGTTGGCCTTAAGGTTAA 59.603 43.478 22.55 14.58 37.57 2.01
4445 10433 1.529244 GTGCAGTGGAGTTGGCCTT 60.529 57.895 3.32 0.00 0.00 4.35
4446 10434 2.113986 GTGCAGTGGAGTTGGCCT 59.886 61.111 3.32 0.00 0.00 5.19
4447 10435 3.357079 CGTGCAGTGGAGTTGGCC 61.357 66.667 0.00 0.00 0.00 5.36
4448 10436 2.280797 TCGTGCAGTGGAGTTGGC 60.281 61.111 0.00 0.00 0.00 4.52
4449 10437 1.961277 GGTCGTGCAGTGGAGTTGG 60.961 63.158 0.00 0.00 0.00 3.77
4450 10438 1.961277 GGGTCGTGCAGTGGAGTTG 60.961 63.158 0.00 0.00 0.00 3.16
4451 10439 0.830444 TAGGGTCGTGCAGTGGAGTT 60.830 55.000 0.00 0.00 0.00 3.01
4452 10440 0.614979 ATAGGGTCGTGCAGTGGAGT 60.615 55.000 0.00 0.00 0.00 3.85
4453 10441 0.103208 GATAGGGTCGTGCAGTGGAG 59.897 60.000 0.00 0.00 0.00 3.86
4454 10442 1.327690 GGATAGGGTCGTGCAGTGGA 61.328 60.000 0.00 0.00 0.00 4.02
4455 10443 1.144057 GGATAGGGTCGTGCAGTGG 59.856 63.158 0.00 0.00 0.00 4.00
4456 10444 0.179100 CAGGATAGGGTCGTGCAGTG 60.179 60.000 0.00 0.00 36.09 3.66
4457 10445 0.614979 ACAGGATAGGGTCGTGCAGT 60.615 55.000 0.00 0.00 44.54 4.40
4458 10446 0.103208 GACAGGATAGGGTCGTGCAG 59.897 60.000 0.00 0.00 44.54 4.41
4459 10447 1.327690 GGACAGGATAGGGTCGTGCA 61.328 60.000 0.00 0.00 44.54 4.57
4460 10448 1.442148 GGACAGGATAGGGTCGTGC 59.558 63.158 0.00 0.00 44.54 5.34
4461 10449 1.734137 CGGACAGGATAGGGTCGTG 59.266 63.158 0.00 0.00 45.79 4.35
4462 10450 2.125961 GCGGACAGGATAGGGTCGT 61.126 63.158 0.00 0.00 34.87 4.34
4463 10451 2.728817 GCGGACAGGATAGGGTCG 59.271 66.667 0.00 0.00 34.87 4.79
4464 10452 2.508751 GGGCGGACAGGATAGGGTC 61.509 68.421 0.00 0.00 0.00 4.46
4465 10453 2.446036 GGGCGGACAGGATAGGGT 60.446 66.667 0.00 0.00 0.00 4.34
4466 10454 3.242291 GGGGCGGACAGGATAGGG 61.242 72.222 0.00 0.00 0.00 3.53
4467 10455 3.242291 GGGGGCGGACAGGATAGG 61.242 72.222 0.00 0.00 0.00 2.57
4468 10456 3.616721 CGGGGGCGGACAGGATAG 61.617 72.222 0.00 0.00 0.00 2.08
4469 10457 4.468769 ACGGGGGCGGACAGGATA 62.469 66.667 0.00 0.00 0.00 2.59
4475 10463 4.419921 AAATGGACGGGGGCGGAC 62.420 66.667 0.00 0.00 0.00 4.79
4476 10464 4.418328 CAAATGGACGGGGGCGGA 62.418 66.667 0.00 0.00 0.00 5.54
4482 10470 0.621609 TTCTACCCCAAATGGACGGG 59.378 55.000 0.00 0.00 43.05 5.28
4483 10471 2.365582 CTTTCTACCCCAAATGGACGG 58.634 52.381 0.00 0.00 37.39 4.79
4484 10472 2.026636 TCCTTTCTACCCCAAATGGACG 60.027 50.000 0.00 0.00 37.39 4.79
4485 10473 3.245122 TGTCCTTTCTACCCCAAATGGAC 60.245 47.826 0.00 11.26 44.20 4.02
4486 10474 2.990284 TGTCCTTTCTACCCCAAATGGA 59.010 45.455 0.00 0.00 37.39 3.41
4487 10475 3.449746 TGTCCTTTCTACCCCAAATGG 57.550 47.619 0.00 0.00 0.00 3.16
4488 10476 5.480073 TCATTTGTCCTTTCTACCCCAAATG 59.520 40.000 13.80 13.80 45.10 2.32
4489 10477 5.650283 TCATTTGTCCTTTCTACCCCAAAT 58.350 37.500 0.00 0.00 33.97 2.32
4490 10478 5.068215 TCATTTGTCCTTTCTACCCCAAA 57.932 39.130 0.00 0.00 0.00 3.28
4491 10479 4.352595 TCTCATTTGTCCTTTCTACCCCAA 59.647 41.667 0.00 0.00 0.00 4.12
4492 10480 3.913799 TCTCATTTGTCCTTTCTACCCCA 59.086 43.478 0.00 0.00 0.00 4.96
4493 10481 4.262617 GTCTCATTTGTCCTTTCTACCCC 58.737 47.826 0.00 0.00 0.00 4.95
4494 10482 3.933332 CGTCTCATTTGTCCTTTCTACCC 59.067 47.826 0.00 0.00 0.00 3.69
4495 10483 3.933332 CCGTCTCATTTGTCCTTTCTACC 59.067 47.826 0.00 0.00 0.00 3.18
4496 10484 4.566987 ACCGTCTCATTTGTCCTTTCTAC 58.433 43.478 0.00 0.00 0.00 2.59
4497 10485 4.322499 GGACCGTCTCATTTGTCCTTTCTA 60.322 45.833 0.00 0.00 43.16 2.10
4498 10486 3.557264 GGACCGTCTCATTTGTCCTTTCT 60.557 47.826 0.00 0.00 43.16 2.52
4499 10487 2.742589 GGACCGTCTCATTTGTCCTTTC 59.257 50.000 0.00 0.00 43.16 2.62
4500 10488 2.105821 TGGACCGTCTCATTTGTCCTTT 59.894 45.455 8.79 0.00 45.98 3.11
4501 10489 1.697432 TGGACCGTCTCATTTGTCCTT 59.303 47.619 8.79 0.00 45.98 3.36
4502 10490 1.348064 TGGACCGTCTCATTTGTCCT 58.652 50.000 8.79 0.00 45.98 3.85
4503 10491 1.804748 GTTGGACCGTCTCATTTGTCC 59.195 52.381 0.00 0.00 45.99 4.02
4504 10492 1.459592 CGTTGGACCGTCTCATTTGTC 59.540 52.381 0.00 0.00 0.00 3.18
4505 10493 1.508632 CGTTGGACCGTCTCATTTGT 58.491 50.000 0.00 0.00 0.00 2.83
4506 10494 0.165944 GCGTTGGACCGTCTCATTTG 59.834 55.000 0.00 0.00 0.00 2.32
4507 10495 0.250124 TGCGTTGGACCGTCTCATTT 60.250 50.000 0.00 0.00 0.00 2.32
4508 10496 0.949105 GTGCGTTGGACCGTCTCATT 60.949 55.000 0.00 0.00 0.00 2.57
4509 10497 1.374252 GTGCGTTGGACCGTCTCAT 60.374 57.895 0.00 0.00 0.00 2.90
4510 10498 2.028484 GTGCGTTGGACCGTCTCA 59.972 61.111 0.00 0.00 0.00 3.27
4511 10499 3.103911 CGTGCGTTGGACCGTCTC 61.104 66.667 0.00 0.00 0.00 3.36
4512 10500 3.598715 TCGTGCGTTGGACCGTCT 61.599 61.111 0.00 0.00 0.00 4.18
4513 10501 3.400590 GTCGTGCGTTGGACCGTC 61.401 66.667 0.00 0.00 0.00 4.79
4527 10515 4.530857 GATGGGTCCAGGCCGTCG 62.531 72.222 0.00 0.00 0.00 5.12
4528 10516 2.670148 AAGATGGGTCCAGGCCGTC 61.670 63.158 0.00 0.00 0.00 4.79
4529 10517 2.610859 AAGATGGGTCCAGGCCGT 60.611 61.111 0.00 0.00 0.00 5.68
4530 10518 2.124570 CAAGATGGGTCCAGGCCG 60.125 66.667 0.00 0.00 0.00 6.13
4531 10519 1.077429 GACAAGATGGGTCCAGGCC 60.077 63.158 0.00 0.00 0.00 5.19
4532 10520 4.645809 GACAAGATGGGTCCAGGC 57.354 61.111 0.00 0.00 0.00 4.85
4537 10525 2.031157 CACAAAACGGACAAGATGGGTC 60.031 50.000 0.00 0.00 34.52 4.46
4538 10526 1.953686 CACAAAACGGACAAGATGGGT 59.046 47.619 0.00 0.00 0.00 4.51
4539 10527 1.953686 ACACAAAACGGACAAGATGGG 59.046 47.619 0.00 0.00 0.00 4.00
4540 10528 2.031157 GGACACAAAACGGACAAGATGG 60.031 50.000 0.00 0.00 0.00 3.51
4541 10529 2.616376 TGGACACAAAACGGACAAGATG 59.384 45.455 0.00 0.00 0.00 2.90
4542 10530 2.616842 GTGGACACAAAACGGACAAGAT 59.383 45.455 0.00 0.00 0.00 2.40
4543 10531 2.011222 GTGGACACAAAACGGACAAGA 58.989 47.619 0.00 0.00 0.00 3.02
4544 10532 1.267832 CGTGGACACAAAACGGACAAG 60.268 52.381 3.12 0.00 33.77 3.16
4545 10533 0.727970 CGTGGACACAAAACGGACAA 59.272 50.000 3.12 0.00 33.77 3.18
4546 10534 1.707239 GCGTGGACACAAAACGGACA 61.707 55.000 3.12 0.00 37.77 4.02
4547 10535 1.010462 GCGTGGACACAAAACGGAC 60.010 57.895 3.12 0.00 37.77 4.79
4548 10536 2.181521 GGCGTGGACACAAAACGGA 61.182 57.895 3.12 0.00 37.77 4.69
4549 10537 2.330041 GGCGTGGACACAAAACGG 59.670 61.111 3.12 0.00 37.77 4.44
4550 10538 2.052590 CGGCGTGGACACAAAACG 60.053 61.111 0.00 0.00 40.22 3.60
4551 10539 1.010462 GTCGGCGTGGACACAAAAC 60.010 57.895 6.85 0.00 36.91 2.43
4552 10540 2.181521 GGTCGGCGTGGACACAAAA 61.182 57.895 6.85 0.00 38.70 2.44
4553 10541 2.589442 GGTCGGCGTGGACACAAA 60.589 61.111 6.85 0.00 38.70 2.83
4554 10542 4.612412 GGGTCGGCGTGGACACAA 62.612 66.667 6.85 0.00 40.14 3.33
4556 10544 3.894547 AATGGGTCGGCGTGGACAC 62.895 63.158 6.85 0.00 40.81 3.67
4557 10545 3.185299 AAATGGGTCGGCGTGGACA 62.185 57.895 6.85 2.64 38.70 4.02
4558 10546 2.359478 AAATGGGTCGGCGTGGAC 60.359 61.111 6.85 0.00 36.18 4.02
4559 10547 2.046700 GAAATGGGTCGGCGTGGA 60.047 61.111 6.85 0.00 0.00 4.02
4560 10548 3.496131 CGAAATGGGTCGGCGTGG 61.496 66.667 6.85 0.00 37.37 4.94
4561 10549 2.433491 TCGAAATGGGTCGGCGTG 60.433 61.111 6.85 0.00 41.43 5.34
4562 10550 2.125673 CTCGAAATGGGTCGGCGT 60.126 61.111 6.85 0.00 41.43 5.68
4563 10551 3.564027 GCTCGAAATGGGTCGGCG 61.564 66.667 0.00 0.00 41.43 6.46
4564 10552 3.564027 CGCTCGAAATGGGTCGGC 61.564 66.667 0.00 0.00 41.43 5.54
4565 10553 3.564027 GCGCTCGAAATGGGTCGG 61.564 66.667 0.00 0.00 41.43 4.79
4566 10554 1.906994 TTTGCGCTCGAAATGGGTCG 61.907 55.000 9.73 0.00 42.48 4.79
4567 10555 0.451783 ATTTGCGCTCGAAATGGGTC 59.548 50.000 9.73 0.00 0.00 4.46
4568 10556 0.887933 AATTTGCGCTCGAAATGGGT 59.112 45.000 9.73 0.00 0.00 4.51
4569 10557 1.655099 CAAATTTGCGCTCGAAATGGG 59.345 47.619 9.73 0.00 0.00 4.00
4570 10558 1.059549 GCAAATTTGCGCTCGAAATGG 59.940 47.619 26.15 4.33 45.11 3.16
4571 10559 2.408398 GCAAATTTGCGCTCGAAATG 57.592 45.000 26.15 1.98 45.11 2.32
4582 10570 1.601430 CCCAAAACCGGTGCAAATTTG 59.399 47.619 17.91 17.91 0.00 2.32
4583 10571 1.210722 ACCCAAAACCGGTGCAAATTT 59.789 42.857 8.52 0.48 30.39 1.82
4584 10572 0.833949 ACCCAAAACCGGTGCAAATT 59.166 45.000 8.52 0.00 30.39 1.82
4585 10573 0.391228 GACCCAAAACCGGTGCAAAT 59.609 50.000 8.52 0.00 32.27 2.32
4586 10574 1.817209 GACCCAAAACCGGTGCAAA 59.183 52.632 8.52 0.00 32.27 3.68
4587 10575 2.482333 CGACCCAAAACCGGTGCAA 61.482 57.895 8.52 0.00 32.27 4.08
4588 10576 2.902846 CGACCCAAAACCGGTGCA 60.903 61.111 8.52 0.00 32.27 4.57
4589 10577 4.337060 GCGACCCAAAACCGGTGC 62.337 66.667 8.52 0.00 32.27 5.01
4590 10578 4.020378 CGCGACCCAAAACCGGTG 62.020 66.667 8.52 0.00 32.27 4.94
4606 10594 4.973055 TCCGTTTGGTGTCCGCCG 62.973 66.667 0.00 0.00 36.30 6.46
4607 10595 3.351416 GTCCGTTTGGTGTCCGCC 61.351 66.667 0.00 0.00 36.30 6.13
4608 10596 3.708734 CGTCCGTTTGGTGTCCGC 61.709 66.667 0.00 0.00 36.30 5.54
4609 10597 3.708734 GCGTCCGTTTGGTGTCCG 61.709 66.667 0.00 0.00 36.30 4.79
4610 10598 3.708734 CGCGTCCGTTTGGTGTCC 61.709 66.667 0.00 0.00 36.30 4.02
4611 10599 4.364409 GCGCGTCCGTTTGGTGTC 62.364 66.667 8.43 0.00 36.67 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.