Multiple sequence alignment - TraesCS7B01G374600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G374600 chr7B 100.000 2288 0 0 1 2288 639855952 639858239 0.000000e+00 4226
1 TraesCS7B01G374600 chr7B 80.536 560 71 24 1722 2266 680774511 680775047 1.650000e-106 396
2 TraesCS7B01G374600 chr1D 95.570 1693 70 5 3 1691 209755870 209757561 0.000000e+00 2706
3 TraesCS7B01G374600 chr6B 95.404 1697 72 6 3 1694 643872253 643870558 0.000000e+00 2697
4 TraesCS7B01G374600 chr6B 94.055 1699 88 5 3 1692 671866713 671865019 0.000000e+00 2566
5 TraesCS7B01G374600 chr6B 93.482 1703 97 8 3 1693 643648510 643650210 0.000000e+00 2518
6 TraesCS7B01G374600 chr1B 95.751 1671 65 6 3 1668 566609764 566611433 0.000000e+00 2687
7 TraesCS7B01G374600 chr1B 95.232 1699 74 6 3 1696 311135943 311134247 0.000000e+00 2682
8 TraesCS7B01G374600 chr3B 94.684 1693 82 8 3 1691 745588842 745590530 0.000000e+00 2621
9 TraesCS7B01G374600 chr5B 94.474 1701 81 10 3 1696 369339842 369338148 0.000000e+00 2608
10 TraesCS7B01G374600 chr5B 93.927 1696 96 5 3 1694 693957764 693956072 0.000000e+00 2555
11 TraesCS7B01G374600 chr6D 83.184 559 53 15 1742 2269 310390452 310389904 7.400000e-130 473
12 TraesCS7B01G374600 chr5D 82.562 562 64 21 1722 2269 378959322 378958781 4.450000e-127 464
13 TraesCS7B01G374600 chr2A 80.708 565 66 24 1722 2266 674186127 674186668 1.270000e-107 399
14 TraesCS7B01G374600 chr2A 80.492 569 66 26 1722 2269 572710577 572710033 5.920000e-106 394
15 TraesCS7B01G374600 chr2A 80.071 567 67 24 1722 2266 193583731 193584273 1.660000e-101 379
16 TraesCS7B01G374600 chr2A 80.223 359 46 15 1722 2073 705569760 705569420 1.760000e-61 246
17 TraesCS7B01G374600 chr1A 80.565 566 66 24 1722 2266 535338488 535339030 1.650000e-106 396
18 TraesCS7B01G374600 chr1A 79.783 554 75 19 1722 2269 558087726 558087204 3.590000e-98 368
19 TraesCS7B01G374600 chr7A 79.640 555 77 24 1722 2269 706319578 706319053 1.290000e-97 366
20 TraesCS7B01G374600 chr7A 77.338 278 25 18 2049 2288 669070545 669070822 1.840000e-26 130
21 TraesCS7B01G374600 chr7D 85.542 249 26 7 2041 2288 576887924 576887685 3.770000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G374600 chr7B 639855952 639858239 2287 False 4226 4226 100.000 1 2288 1 chr7B.!!$F1 2287
1 TraesCS7B01G374600 chr7B 680774511 680775047 536 False 396 396 80.536 1722 2266 1 chr7B.!!$F2 544
2 TraesCS7B01G374600 chr1D 209755870 209757561 1691 False 2706 2706 95.570 3 1691 1 chr1D.!!$F1 1688
3 TraesCS7B01G374600 chr6B 643870558 643872253 1695 True 2697 2697 95.404 3 1694 1 chr6B.!!$R1 1691
4 TraesCS7B01G374600 chr6B 671865019 671866713 1694 True 2566 2566 94.055 3 1692 1 chr6B.!!$R2 1689
5 TraesCS7B01G374600 chr6B 643648510 643650210 1700 False 2518 2518 93.482 3 1693 1 chr6B.!!$F1 1690
6 TraesCS7B01G374600 chr1B 566609764 566611433 1669 False 2687 2687 95.751 3 1668 1 chr1B.!!$F1 1665
7 TraesCS7B01G374600 chr1B 311134247 311135943 1696 True 2682 2682 95.232 3 1696 1 chr1B.!!$R1 1693
8 TraesCS7B01G374600 chr3B 745588842 745590530 1688 False 2621 2621 94.684 3 1691 1 chr3B.!!$F1 1688
9 TraesCS7B01G374600 chr5B 369338148 369339842 1694 True 2608 2608 94.474 3 1696 1 chr5B.!!$R1 1693
10 TraesCS7B01G374600 chr5B 693956072 693957764 1692 True 2555 2555 93.927 3 1694 1 chr5B.!!$R2 1691
11 TraesCS7B01G374600 chr6D 310389904 310390452 548 True 473 473 83.184 1742 2269 1 chr6D.!!$R1 527
12 TraesCS7B01G374600 chr5D 378958781 378959322 541 True 464 464 82.562 1722 2269 1 chr5D.!!$R1 547
13 TraesCS7B01G374600 chr2A 674186127 674186668 541 False 399 399 80.708 1722 2266 1 chr2A.!!$F2 544
14 TraesCS7B01G374600 chr2A 572710033 572710577 544 True 394 394 80.492 1722 2269 1 chr2A.!!$R1 547
15 TraesCS7B01G374600 chr2A 193583731 193584273 542 False 379 379 80.071 1722 2266 1 chr2A.!!$F1 544
16 TraesCS7B01G374600 chr1A 535338488 535339030 542 False 396 396 80.565 1722 2266 1 chr1A.!!$F1 544
17 TraesCS7B01G374600 chr1A 558087204 558087726 522 True 368 368 79.783 1722 2269 1 chr1A.!!$R1 547
18 TraesCS7B01G374600 chr7A 706319053 706319578 525 True 366 366 79.640 1722 2269 1 chr7A.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 583 0.121197 TGGGGAGGAGGAAGGTTGAT 59.879 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1571 0.108186 TACCTGCATGAGCTGAACCG 60.108 55.0 0.0 0.0 41.71 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 1.681327 GTAGGACGGACTGGCTCCA 60.681 63.158 0.00 0.00 39.39 3.86
472 475 0.388649 CTCGAACTTGGTCCGGTCAG 60.389 60.000 0.00 0.00 0.00 3.51
515 518 1.447643 CTCTCCAGCCAATACCCCG 59.552 63.158 0.00 0.00 0.00 5.73
537 540 0.544120 GGAAGGGGTTGCCATTGGAA 60.544 55.000 6.95 0.00 0.00 3.53
579 583 0.121197 TGGGGAGGAGGAAGGTTGAT 59.879 55.000 0.00 0.00 0.00 2.57
594 598 6.153680 GGAAGGTTGATAGTGAGAGAAGAGAA 59.846 42.308 0.00 0.00 0.00 2.87
618 622 0.253610 TGGGTAAATAGTGGTGGGCG 59.746 55.000 0.00 0.00 0.00 6.13
820 835 1.377690 TCCCTTTCACCCAATGCCTA 58.622 50.000 0.00 0.00 0.00 3.93
956 973 1.083706 AGGAGGATGGCCCAACTCT 59.916 57.895 15.70 1.82 37.41 3.24
999 1017 0.674581 CGAAGCTTGAGTGCATCCCA 60.675 55.000 2.10 0.00 34.99 4.37
1036 1054 1.143183 AAGCACTTCGTCGTGGTGT 59.857 52.632 16.66 6.16 44.08 4.16
1192 1210 1.412710 TGACGTTCAAGCTCCTCACTT 59.587 47.619 0.00 0.00 0.00 3.16
1289 1307 3.771160 CGCCGCCAAGGAGTAGGT 61.771 66.667 0.00 0.00 45.00 3.08
1324 1343 6.874664 CCTAAGTACTATCGAGTCTGCTATGA 59.125 42.308 0.00 0.00 37.10 2.15
1410 1433 7.667043 TTTGGTTATACTCTGTTGTGCTTAG 57.333 36.000 0.00 0.00 0.00 2.18
1415 1438 3.340814 ACTCTGTTGTGCTTAGGATGG 57.659 47.619 0.00 0.00 0.00 3.51
1547 1571 1.675720 AACCAAACACCAGGCAGTGC 61.676 55.000 6.55 6.55 41.67 4.40
1556 1580 3.946201 AGGCAGTGCGGTTCAGCT 61.946 61.111 9.45 0.00 38.13 4.24
1695 1719 1.601914 GCAACCAAACACGCCCTTAAG 60.602 52.381 0.00 0.00 0.00 1.85
1697 1721 0.475044 ACCAAACACGCCCTTAAGGA 59.525 50.000 23.74 0.00 38.24 3.36
1698 1722 1.133730 ACCAAACACGCCCTTAAGGAA 60.134 47.619 23.74 0.00 38.24 3.36
1699 1723 1.268625 CCAAACACGCCCTTAAGGAAC 59.731 52.381 23.74 13.22 38.24 3.62
1700 1724 1.950909 CAAACACGCCCTTAAGGAACA 59.049 47.619 23.74 0.00 38.24 3.18
1701 1725 1.601166 AACACGCCCTTAAGGAACAC 58.399 50.000 23.74 8.24 38.24 3.32
1702 1726 0.470766 ACACGCCCTTAAGGAACACA 59.529 50.000 23.74 0.00 38.24 3.72
1703 1727 1.134037 ACACGCCCTTAAGGAACACAA 60.134 47.619 23.74 0.00 38.24 3.33
1704 1728 1.950909 CACGCCCTTAAGGAACACAAA 59.049 47.619 23.74 0.00 38.24 2.83
1705 1729 1.951602 ACGCCCTTAAGGAACACAAAC 59.048 47.619 23.74 1.10 38.24 2.93
1706 1730 2.227194 CGCCCTTAAGGAACACAAACT 58.773 47.619 23.74 0.00 38.24 2.66
1707 1731 2.031157 CGCCCTTAAGGAACACAAACTG 60.031 50.000 23.74 2.95 38.24 3.16
1708 1732 2.296190 GCCCTTAAGGAACACAAACTGG 59.704 50.000 23.74 2.42 38.24 4.00
1709 1733 3.827722 CCCTTAAGGAACACAAACTGGA 58.172 45.455 23.74 0.00 38.24 3.86
1710 1734 4.211920 CCCTTAAGGAACACAAACTGGAA 58.788 43.478 23.74 0.00 38.24 3.53
1711 1735 4.832823 CCCTTAAGGAACACAAACTGGAAT 59.167 41.667 23.74 0.00 38.24 3.01
1712 1736 5.304357 CCCTTAAGGAACACAAACTGGAATT 59.696 40.000 23.74 0.00 38.24 2.17
1713 1737 6.183360 CCCTTAAGGAACACAAACTGGAATTT 60.183 38.462 23.74 0.00 38.24 1.82
1714 1738 7.272244 CCTTAAGGAACACAAACTGGAATTTT 58.728 34.615 17.21 0.00 37.39 1.82
1715 1739 7.438160 CCTTAAGGAACACAAACTGGAATTTTC 59.562 37.037 17.21 0.00 37.39 2.29
1716 1740 6.544928 AAGGAACACAAACTGGAATTTTCT 57.455 33.333 0.00 0.00 0.00 2.52
1717 1741 6.544928 AGGAACACAAACTGGAATTTTCTT 57.455 33.333 0.00 0.00 0.00 2.52
1718 1742 7.654022 AGGAACACAAACTGGAATTTTCTTA 57.346 32.000 0.00 0.00 0.00 2.10
1719 1743 8.250143 AGGAACACAAACTGGAATTTTCTTAT 57.750 30.769 0.00 0.00 0.00 1.73
1720 1744 8.143835 AGGAACACAAACTGGAATTTTCTTATG 58.856 33.333 0.00 0.00 0.00 1.90
1725 1749 9.919348 CACAAACTGGAATTTTCTTATGTTTTG 57.081 29.630 0.00 0.00 0.00 2.44
1729 1753 8.538409 ACTGGAATTTTCTTATGTTTTGATGC 57.462 30.769 0.00 0.00 0.00 3.91
1739 1763 7.028962 TCTTATGTTTTGATGCAATTTCCTCG 58.971 34.615 0.00 0.00 0.00 4.63
1740 1764 3.316283 TGTTTTGATGCAATTTCCTCGC 58.684 40.909 0.00 0.00 0.00 5.03
1774 1805 0.401738 ACATTGCCCTGTACTGCAGT 59.598 50.000 25.12 25.12 43.55 4.40
1779 1810 1.087501 GCCCTGTACTGCAGTAAAGC 58.912 55.000 31.17 23.91 43.55 3.51
1781 1812 2.093658 GCCCTGTACTGCAGTAAAGCTA 60.094 50.000 31.17 9.47 43.55 3.32
1795 1826 6.967199 GCAGTAAAGCTATTTTCATGTGTACC 59.033 38.462 0.00 0.00 0.00 3.34
1796 1827 7.180079 CAGTAAAGCTATTTTCATGTGTACCG 58.820 38.462 0.00 0.00 0.00 4.02
1801 1832 1.890876 TTTTCATGTGTACCGCAGCT 58.109 45.000 0.00 0.00 0.00 4.24
1806 1837 2.232696 TCATGTGTACCGCAGCTAAGAA 59.767 45.455 0.00 0.00 0.00 2.52
1836 1868 6.539173 TCATGTGTACCTTGTACTGGAATTT 58.461 36.000 11.48 0.00 0.00 1.82
1853 1910 6.102663 TGGAATTTGTGTTGGTGTAGTTTTG 58.897 36.000 0.00 0.00 0.00 2.44
1954 2017 4.517285 CCAGTTCATGTAGCAGGTGTATT 58.483 43.478 0.00 0.00 0.00 1.89
1956 2019 5.415701 CCAGTTCATGTAGCAGGTGTATTTT 59.584 40.000 0.00 0.00 0.00 1.82
1960 2023 5.185454 TCATGTAGCAGGTGTATTTTGAGG 58.815 41.667 0.00 0.00 0.00 3.86
1964 2027 2.307098 AGCAGGTGTATTTTGAGGAGCT 59.693 45.455 0.00 0.00 0.00 4.09
1995 2058 6.324770 AGGAAAAACATGGAAGAGTTCAACAT 59.675 34.615 0.00 0.00 0.00 2.71
2037 2100 2.685388 GGACATTTCCTGAGCTTTAGCC 59.315 50.000 0.00 0.00 39.44 3.93
2038 2101 3.615155 GACATTTCCTGAGCTTTAGCCT 58.385 45.455 0.00 0.00 43.38 4.58
2045 2108 1.277557 CTGAGCTTTAGCCTGTGGACT 59.722 52.381 0.00 0.00 43.38 3.85
2079 2142 1.352083 TTTCCTCTGTCCTCCACCAG 58.648 55.000 0.00 0.00 0.00 4.00
2094 2158 3.118775 TCCACCAGTATTCGGATCTGTTG 60.119 47.826 0.42 0.16 0.00 3.33
2101 2165 1.060729 TTCGGATCTGTTGTTCCCCA 58.939 50.000 0.42 0.00 0.00 4.96
2117 2181 0.750911 CCCATTGCTTCTCTCCAGGC 60.751 60.000 0.00 0.00 0.00 4.85
2137 2201 0.995024 ACTTGCCCCTCTGTTATGCT 59.005 50.000 0.00 0.00 0.00 3.79
2154 2218 7.417612 TGTTATGCTTCTCTGACTTGTTTTTC 58.582 34.615 0.00 0.00 0.00 2.29
2165 2233 7.978982 TCTGACTTGTTTTTCTTCTTCTTCTG 58.021 34.615 0.00 0.00 0.00 3.02
2172 2240 4.625607 TTTCTTCTTCTTCTGTCTCCCC 57.374 45.455 0.00 0.00 0.00 4.81
2183 2251 1.768077 GTCTCCCCCTCTCCCATGG 60.768 68.421 4.14 4.14 0.00 3.66
2196 2264 1.528824 CCATGGCGTCTCCCTGATT 59.471 57.895 0.00 0.00 32.84 2.57
2199 2268 1.672881 CATGGCGTCTCCCTGATTTTC 59.327 52.381 0.00 0.00 32.84 2.29
2202 2271 2.569853 TGGCGTCTCCCTGATTTTCTTA 59.430 45.455 0.00 0.00 0.00 2.10
2226 2295 4.288105 TGCTCTTTCTTCTCCTCATTTCCT 59.712 41.667 0.00 0.00 0.00 3.36
2239 2315 1.213678 CATTTCCTCTCTCCCATGGCA 59.786 52.381 6.09 0.00 0.00 4.92
2243 2319 1.525923 CTCTCTCCCATGGCACCTG 59.474 63.158 6.09 0.00 0.00 4.00
2266 2342 3.442625 CCAGATGAGTTGTGTGATGCAAT 59.557 43.478 0.00 0.00 0.00 3.56
2269 2345 5.571741 CAGATGAGTTGTGTGATGCAATTTC 59.428 40.000 0.00 0.00 0.00 2.17
2270 2346 4.241590 TGAGTTGTGTGATGCAATTTCC 57.758 40.909 0.00 0.00 0.00 3.13
2271 2347 3.890756 TGAGTTGTGTGATGCAATTTCCT 59.109 39.130 0.00 0.00 0.00 3.36
2272 2348 4.341806 TGAGTTGTGTGATGCAATTTCCTT 59.658 37.500 0.00 0.00 0.00 3.36
2273 2349 5.163426 TGAGTTGTGTGATGCAATTTCCTTT 60.163 36.000 0.00 0.00 0.00 3.11
2274 2350 6.040278 TGAGTTGTGTGATGCAATTTCCTTTA 59.960 34.615 0.00 0.00 0.00 1.85
2275 2351 6.815089 AGTTGTGTGATGCAATTTCCTTTAA 58.185 32.000 0.00 0.00 0.00 1.52
2276 2352 6.701400 AGTTGTGTGATGCAATTTCCTTTAAC 59.299 34.615 0.00 0.00 0.00 2.01
2277 2353 6.154203 TGTGTGATGCAATTTCCTTTAACA 57.846 33.333 0.00 0.00 0.00 2.41
2278 2354 6.757237 TGTGTGATGCAATTTCCTTTAACAT 58.243 32.000 0.00 0.00 0.00 2.71
2279 2355 7.890515 TGTGTGATGCAATTTCCTTTAACATA 58.109 30.769 0.00 0.00 0.00 2.29
2280 2356 8.028354 TGTGTGATGCAATTTCCTTTAACATAG 58.972 33.333 0.00 0.00 0.00 2.23
2281 2357 7.489113 GTGTGATGCAATTTCCTTTAACATAGG 59.511 37.037 0.00 0.00 0.00 2.57
2282 2358 6.476706 GTGATGCAATTTCCTTTAACATAGGC 59.523 38.462 0.00 0.00 32.59 3.93
2283 2359 6.380846 TGATGCAATTTCCTTTAACATAGGCT 59.619 34.615 0.00 0.00 32.59 4.58
2284 2360 6.603940 TGCAATTTCCTTTAACATAGGCTT 57.396 33.333 0.00 0.00 32.59 4.35
2285 2361 7.710676 TGCAATTTCCTTTAACATAGGCTTA 57.289 32.000 0.00 0.00 32.59 3.09
2286 2362 8.305046 TGCAATTTCCTTTAACATAGGCTTAT 57.695 30.769 0.00 0.00 32.59 1.73
2287 2363 8.413229 TGCAATTTCCTTTAACATAGGCTTATC 58.587 33.333 0.00 0.00 32.59 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.064832 AGAAGAAGATGAAGGCCAGCC 60.065 52.381 5.01 0.00 0.00 4.85
64 65 4.719106 ACTCCGCCGAGGACGACT 62.719 66.667 7.01 0.00 45.98 4.18
304 307 1.405526 GGCAGTTGACATCCTTCGCTA 60.406 52.381 0.00 0.00 0.00 4.26
515 518 0.972471 CAATGGCAACCCCTTCCCTC 60.972 60.000 0.00 0.00 0.00 4.30
579 583 3.564571 CCACCCCTTCTCTTCTCTCACTA 60.565 52.174 0.00 0.00 0.00 2.74
594 598 1.920351 CACCACTATTTACCCACCCCT 59.080 52.381 0.00 0.00 0.00 4.79
618 622 4.264217 CCACCCCCTATATTTATTCACCCC 60.264 50.000 0.00 0.00 0.00 4.95
796 811 1.753073 CATTGGGTGAAAGGGATGCTC 59.247 52.381 0.00 0.00 0.00 4.26
805 820 2.432444 CTCGTTAGGCATTGGGTGAAA 58.568 47.619 0.00 0.00 0.00 2.69
820 835 2.357517 CGGCAGCTCAACCTCGTT 60.358 61.111 0.00 0.00 0.00 3.85
902 918 2.117779 TTGTGGCGCTTGTTGCTGA 61.118 52.632 7.64 0.00 40.11 4.26
999 1017 1.384191 GGTGAAGTCCAGGGGCATT 59.616 57.895 0.00 0.00 0.00 3.56
1036 1054 0.241213 CTGAGCTTGAACTCCGTCGA 59.759 55.000 0.00 0.00 35.72 4.20
1218 1236 0.460109 CCTCAATGCCATCGTCGTCA 60.460 55.000 0.00 0.00 0.00 4.35
1324 1343 8.604035 CAGTTCATAACAGTTCTACGCATAAAT 58.396 33.333 0.00 0.00 0.00 1.40
1385 1408 7.336931 CCTAAGCACAACAGAGTATAACCAAAT 59.663 37.037 0.00 0.00 0.00 2.32
1387 1410 6.014070 TCCTAAGCACAACAGAGTATAACCAA 60.014 38.462 0.00 0.00 0.00 3.67
1390 1413 6.480320 CCATCCTAAGCACAACAGAGTATAAC 59.520 42.308 0.00 0.00 0.00 1.89
1410 1433 2.825836 CTTCGGCAGCACCCATCC 60.826 66.667 0.00 0.00 33.26 3.51
1415 1438 3.357079 CCACACTTCGGCAGCACC 61.357 66.667 0.00 0.00 0.00 5.01
1547 1571 0.108186 TACCTGCATGAGCTGAACCG 60.108 55.000 0.00 0.00 41.71 4.44
1556 1580 1.216064 ATGCCCTCTTACCTGCATGA 58.784 50.000 0.00 0.00 42.48 3.07
1695 1719 7.926018 ACATAAGAAAATTCCAGTTTGTGTTCC 59.074 33.333 0.00 0.00 0.00 3.62
1697 1721 9.665719 AAACATAAGAAAATTCCAGTTTGTGTT 57.334 25.926 0.00 3.71 0.00 3.32
1698 1722 9.665719 AAAACATAAGAAAATTCCAGTTTGTGT 57.334 25.926 0.00 0.00 0.00 3.72
1699 1723 9.919348 CAAAACATAAGAAAATTCCAGTTTGTG 57.081 29.630 0.00 0.00 0.00 3.33
1700 1724 9.883142 TCAAAACATAAGAAAATTCCAGTTTGT 57.117 25.926 0.00 0.00 0.00 2.83
1703 1727 8.992073 GCATCAAAACATAAGAAAATTCCAGTT 58.008 29.630 0.00 0.00 0.00 3.16
1704 1728 8.149647 TGCATCAAAACATAAGAAAATTCCAGT 58.850 29.630 0.00 0.00 0.00 4.00
1705 1729 8.537049 TGCATCAAAACATAAGAAAATTCCAG 57.463 30.769 0.00 0.00 0.00 3.86
1706 1730 8.899427 TTGCATCAAAACATAAGAAAATTCCA 57.101 26.923 0.00 0.00 0.00 3.53
1711 1735 9.558396 AGGAAATTGCATCAAAACATAAGAAAA 57.442 25.926 0.00 0.00 0.00 2.29
1712 1736 9.206870 GAGGAAATTGCATCAAAACATAAGAAA 57.793 29.630 0.00 0.00 0.00 2.52
1713 1737 7.541783 CGAGGAAATTGCATCAAAACATAAGAA 59.458 33.333 0.00 0.00 0.00 2.52
1714 1738 7.028962 CGAGGAAATTGCATCAAAACATAAGA 58.971 34.615 0.00 0.00 0.00 2.10
1715 1739 6.237648 GCGAGGAAATTGCATCAAAACATAAG 60.238 38.462 0.00 0.00 38.31 1.73
1716 1740 5.576384 GCGAGGAAATTGCATCAAAACATAA 59.424 36.000 0.00 0.00 38.31 1.90
1717 1741 5.101628 GCGAGGAAATTGCATCAAAACATA 58.898 37.500 0.00 0.00 38.31 2.29
1718 1742 3.928375 GCGAGGAAATTGCATCAAAACAT 59.072 39.130 0.00 0.00 38.31 2.71
1719 1743 3.243670 TGCGAGGAAATTGCATCAAAACA 60.244 39.130 0.00 0.00 43.74 2.83
1720 1744 3.316283 TGCGAGGAAATTGCATCAAAAC 58.684 40.909 0.00 0.00 43.74 2.43
1729 1753 3.837213 ACATGAACTGCGAGGAAATTG 57.163 42.857 0.00 0.00 0.00 2.32
1774 1805 5.644206 TGCGGTACACATGAAAATAGCTTTA 59.356 36.000 0.00 0.00 0.00 1.85
1779 1810 3.623060 AGCTGCGGTACACATGAAAATAG 59.377 43.478 0.00 0.00 0.00 1.73
1781 1812 2.436417 AGCTGCGGTACACATGAAAAT 58.564 42.857 0.00 0.00 0.00 1.82
1825 1857 4.911514 ACACCAACACAAATTCCAGTAC 57.088 40.909 0.00 0.00 0.00 2.73
1826 1858 5.686753 ACTACACCAACACAAATTCCAGTA 58.313 37.500 0.00 0.00 0.00 2.74
1836 1868 2.729194 AGGCAAAACTACACCAACACA 58.271 42.857 0.00 0.00 0.00 3.72
1924 1985 0.983467 TACATGAACTGGCCTGCAGA 59.017 50.000 17.39 0.00 0.00 4.26
1933 1996 6.149308 TCAAAATACACCTGCTACATGAACTG 59.851 38.462 0.00 0.00 0.00 3.16
1954 2017 0.473694 TCCTCACCCAGCTCCTCAAA 60.474 55.000 0.00 0.00 0.00 2.69
1956 2019 0.473694 TTTCCTCACCCAGCTCCTCA 60.474 55.000 0.00 0.00 0.00 3.86
1960 2023 1.981256 TGTTTTTCCTCACCCAGCTC 58.019 50.000 0.00 0.00 0.00 4.09
1964 2027 3.117322 TCTTCCATGTTTTTCCTCACCCA 60.117 43.478 0.00 0.00 0.00 4.51
1995 2058 6.269077 TGTCCTACTCCTTTTGATCACACTTA 59.731 38.462 0.00 0.00 0.00 2.24
2032 2095 2.300152 CAAGAGACAGTCCACAGGCTAA 59.700 50.000 0.00 0.00 0.00 3.09
2033 2096 1.895798 CAAGAGACAGTCCACAGGCTA 59.104 52.381 0.00 0.00 0.00 3.93
2034 2097 0.683973 CAAGAGACAGTCCACAGGCT 59.316 55.000 0.00 0.00 0.00 4.58
2035 2098 0.321122 CCAAGAGACAGTCCACAGGC 60.321 60.000 0.00 0.00 0.00 4.85
2036 2099 1.342074 TCCAAGAGACAGTCCACAGG 58.658 55.000 0.00 0.00 0.00 4.00
2037 2100 2.564504 TCATCCAAGAGACAGTCCACAG 59.435 50.000 0.00 0.00 0.00 3.66
2038 2101 2.608623 TCATCCAAGAGACAGTCCACA 58.391 47.619 0.00 0.00 0.00 4.17
2045 2108 5.013495 ACAGAGGAAAATCATCCAAGAGACA 59.987 40.000 0.00 0.00 42.27 3.41
2079 2142 3.203716 GGGGAACAACAGATCCGAATAC 58.796 50.000 0.00 0.00 36.54 1.89
2094 2158 1.004745 TGGAGAGAAGCAATGGGGAAC 59.995 52.381 0.00 0.00 0.00 3.62
2101 2165 0.990374 AGTGCCTGGAGAGAAGCAAT 59.010 50.000 0.00 0.00 36.91 3.56
2117 2181 1.098050 GCATAACAGAGGGGCAAGTG 58.902 55.000 0.00 0.00 0.00 3.16
2133 2197 6.545298 AGAAGAAAAACAAGTCAGAGAAGCAT 59.455 34.615 0.00 0.00 0.00 3.79
2137 2201 8.567285 AAGAAGAAGAAAAACAAGTCAGAGAA 57.433 30.769 0.00 0.00 0.00 2.87
2154 2218 2.499693 GAGGGGGAGACAGAAGAAGAAG 59.500 54.545 0.00 0.00 0.00 2.85
2165 2233 1.768077 CCATGGGAGAGGGGGAGAC 60.768 68.421 2.85 0.00 0.00 3.36
2172 2240 2.801631 GGAGACGCCATGGGAGAGG 61.802 68.421 15.13 0.00 36.34 3.69
2183 2251 3.002759 GCATAAGAAAATCAGGGAGACGC 59.997 47.826 0.00 0.00 0.00 5.19
2196 2264 7.009179 TGAGGAGAAGAAAGAGCATAAGAAA 57.991 36.000 0.00 0.00 0.00 2.52
2199 2268 7.012232 GGAAATGAGGAGAAGAAAGAGCATAAG 59.988 40.741 0.00 0.00 0.00 1.73
2202 2271 5.044993 AGGAAATGAGGAGAAGAAAGAGCAT 60.045 40.000 0.00 0.00 0.00 3.79
2226 2295 2.673200 GCAGGTGCCATGGGAGAGA 61.673 63.158 15.13 0.00 34.31 3.10
2239 2315 0.767375 ACACAACTCATCTGGCAGGT 59.233 50.000 15.73 3.88 0.00 4.00
2243 2319 1.131883 GCATCACACAACTCATCTGGC 59.868 52.381 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.