Multiple sequence alignment - TraesCS7B01G374500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G374500 chr7B 100.000 4559 0 0 1 4559 639851685 639847127 0.000000e+00 8419.0
1 TraesCS7B01G374500 chr7B 76.000 550 122 8 1459 2003 337370269 337369725 4.490000e-70 276.0
2 TraesCS7B01G374500 chr7B 82.659 173 30 0 1174 1346 337158795 337158623 2.200000e-33 154.0
3 TraesCS7B01G374500 chr7B 82.857 175 24 6 1172 1343 666685332 666685161 7.900000e-33 152.0
4 TraesCS7B01G374500 chr7B 78.261 207 28 9 83 285 53627589 53627782 2.880000e-22 117.0
5 TraesCS7B01G374500 chr7B 81.013 79 14 1 3878 3956 711233551 711233474 1.370000e-05 62.1
6 TraesCS7B01G374500 chr7D 91.088 4410 263 59 2 4394 576893440 576897736 0.000000e+00 5847.0
7 TraesCS7B01G374500 chr7D 81.264 886 135 25 1130 2003 15000424 14999558 0.000000e+00 688.0
8 TraesCS7B01G374500 chr7D 84.024 169 21 6 1172 1337 594986854 594987019 1.700000e-34 158.0
9 TraesCS7B01G374500 chr7D 77.692 260 46 9 33 287 98619476 98619728 1.020000e-31 148.0
10 TraesCS7B01G374500 chr7D 82.081 173 31 0 1174 1346 191841194 191841022 1.020000e-31 148.0
11 TraesCS7B01G374500 chr7D 76.613 124 28 1 160 282 637917128 637917251 2.940000e-07 67.6
12 TraesCS7B01G374500 chr7A 90.054 3690 208 71 121 3773 669032323 669028756 0.000000e+00 4634.0
13 TraesCS7B01G374500 chr7A 81.066 882 143 21 1130 2003 14446959 14446094 0.000000e+00 682.0
14 TraesCS7B01G374500 chr7A 81.500 200 34 2 1160 1356 200634377 200634178 1.310000e-35 161.0
15 TraesCS7B01G374500 chr7A 84.024 169 21 6 1172 1337 687953189 687953354 1.700000e-34 158.0
16 TraesCS7B01G374500 chr7A 83.529 170 24 4 1168 1335 682892223 682892056 6.110000e-34 156.0
17 TraesCS7B01G374500 chr2A 78.292 281 49 6 10 286 722517325 722517053 2.180000e-38 171.0
18 TraesCS7B01G374500 chr5A 81.481 216 25 11 3755 3962 581134181 581133973 3.650000e-36 163.0
19 TraesCS7B01G374500 chr3D 81.221 213 30 8 3755 3962 522508571 522508778 3.650000e-36 163.0
20 TraesCS7B01G374500 chr3D 81.068 206 34 4 3755 3957 548494719 548494922 4.720000e-35 159.0
21 TraesCS7B01G374500 chr1D 77.778 279 40 10 31 304 423608681 423608420 7.900000e-33 152.0
22 TraesCS7B01G374500 chr3B 81.481 108 17 2 3755 3860 506193784 506193678 8.130000e-13 86.1
23 TraesCS7B01G374500 chr6A 79.661 118 18 4 31 147 93807601 93807489 3.780000e-11 80.5
24 TraesCS7B01G374500 chr6A 81.818 66 10 2 119 183 439671348 439671284 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G374500 chr7B 639847127 639851685 4558 True 8419 8419 100.000 1 4559 1 chr7B.!!$R3 4558
1 TraesCS7B01G374500 chr7B 337369725 337370269 544 True 276 276 76.000 1459 2003 1 chr7B.!!$R2 544
2 TraesCS7B01G374500 chr7D 576893440 576897736 4296 False 5847 5847 91.088 2 4394 1 chr7D.!!$F2 4392
3 TraesCS7B01G374500 chr7D 14999558 15000424 866 True 688 688 81.264 1130 2003 1 chr7D.!!$R1 873
4 TraesCS7B01G374500 chr7A 669028756 669032323 3567 True 4634 4634 90.054 121 3773 1 chr7A.!!$R3 3652
5 TraesCS7B01G374500 chr7A 14446094 14446959 865 True 682 682 81.066 1130 2003 1 chr7A.!!$R1 873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.035820 TAGTGATTGTTCGGTGGCCC 60.036 55.0 0.00 0.0 0.00 5.80 F
1010 1036 0.032117 GCCTCCCCATAAAAAGGCCT 60.032 55.0 0.00 0.0 46.97 5.19 F
1403 1438 0.323629 AAAGAATTCCGTGCCCTCGA 59.676 50.0 0.65 0.0 0.00 4.04 F
2972 3060 0.892358 TCTCGGTGCGTTCTACCTGT 60.892 55.0 0.00 0.0 36.03 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1438 0.674895 GCAATCGGCTGTCTCCAAGT 60.675 55.000 0.0 0.0 40.25 3.16 R
2947 3035 0.603569 AGAACGCACCGAGATTCACT 59.396 50.000 0.0 0.0 0.00 3.41 R
3211 3304 0.682292 GCTCCTAGTGATGGGTAGGC 59.318 60.000 0.0 0.0 36.49 3.93 R
4321 4431 2.023673 CAAAACAGTGTGGCTTCTCCA 58.976 47.619 0.0 0.0 44.18 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.070105 TTGGTGTCAGGTACGGTGC 59.930 57.895 0.00 0.00 0.00 5.01
40 41 0.389948 GTCAGGTACGGTGCTTCAGG 60.390 60.000 0.00 0.00 0.00 3.86
46 47 4.521639 CAGGTACGGTGCTTCAGGTATATA 59.478 45.833 0.00 0.00 0.00 0.86
67 68 3.214328 ACAAGGGTTCAACAGTGATGAC 58.786 45.455 2.04 0.00 32.48 3.06
69 70 4.102524 ACAAGGGTTCAACAGTGATGACTA 59.897 41.667 2.04 0.00 32.48 2.59
79 80 0.460311 GTGATGACTACGGGGGTCAG 59.540 60.000 11.63 0.00 45.14 3.51
101 102 1.745489 GCTGGTCCTTAAGGCCACG 60.745 63.158 25.11 21.50 36.78 4.94
103 104 0.899720 CTGGTCCTTAAGGCCACGTA 59.100 55.000 25.11 11.12 36.78 3.57
148 149 3.329889 AAGGTCATGCCGGCTCCA 61.330 61.111 29.70 7.94 43.70 3.86
162 163 1.153667 CTCCAGCAGAAGAGGCGAC 60.154 63.158 0.00 0.00 36.08 5.19
187 188 2.956964 CATCGGCGGCTCGTTCTC 60.957 66.667 7.21 0.00 0.00 2.87
191 192 2.184322 GGCGGCTCGTTCTCATGA 59.816 61.111 0.00 0.00 0.00 3.07
212 213 1.732259 CAGTAGTGATTGTTCGGTGGC 59.268 52.381 0.00 0.00 0.00 5.01
214 215 0.035820 TAGTGATTGTTCGGTGGCCC 60.036 55.000 0.00 0.00 0.00 5.80
229 231 1.412710 TGGCCCTGAATCTCGATGTAC 59.587 52.381 0.00 0.00 0.00 2.90
235 237 5.815740 GCCCTGAATCTCGATGTACTTTTTA 59.184 40.000 0.00 0.00 0.00 1.52
237 239 7.656137 GCCCTGAATCTCGATGTACTTTTTATA 59.344 37.037 0.00 0.00 0.00 0.98
238 240 9.712305 CCCTGAATCTCGATGTACTTTTTATAT 57.288 33.333 0.00 0.00 0.00 0.86
352 365 4.695217 TGTTTTTCTGGAATATCACGGC 57.305 40.909 0.00 0.00 0.00 5.68
355 368 5.584649 TGTTTTTCTGGAATATCACGGCTAG 59.415 40.000 0.00 0.00 0.00 3.42
359 372 5.808366 TCTGGAATATCACGGCTAGAATT 57.192 39.130 0.00 0.00 0.00 2.17
385 398 1.606668 GGCATTGTTTGACGACCTCAA 59.393 47.619 0.00 0.00 37.08 3.02
410 423 1.218196 TCCAGGCCCTAACCAAACAAA 59.782 47.619 0.00 0.00 0.00 2.83
453 467 2.689766 GACATCGACAGCGCGTTC 59.310 61.111 8.43 0.70 37.46 3.95
509 524 1.226717 GCAACGCAACGGGAACAAA 60.227 52.632 0.00 0.00 0.00 2.83
541 556 1.828224 GGATCCAATTGACCCGGCC 60.828 63.158 6.95 0.00 0.00 6.13
544 559 1.281925 ATCCAATTGACCCGGCCTCT 61.282 55.000 7.12 0.00 0.00 3.69
631 647 4.643334 GCGGGAGATATTTTTGGGTTTACT 59.357 41.667 0.00 0.00 0.00 2.24
638 654 0.389757 TTTTGGGTTTACTTGGCGGC 59.610 50.000 0.00 0.00 0.00 6.53
667 683 2.746277 ATGGCGGCGTTTCAGACC 60.746 61.111 9.37 0.00 0.00 3.85
670 686 4.699522 GCGGCGTTTCAGACCCCT 62.700 66.667 9.37 0.00 0.00 4.79
684 700 0.908180 ACCCCTACAAACCTCCTCCG 60.908 60.000 0.00 0.00 0.00 4.63
699 715 1.066716 CCTCCGAATTTGTGTCCGGTA 60.067 52.381 0.00 0.00 42.34 4.02
700 716 2.268298 CTCCGAATTTGTGTCCGGTAG 58.732 52.381 0.00 0.00 42.34 3.18
723 741 7.171630 AGACGGAAAAACAGATACATAGACT 57.828 36.000 0.00 0.00 0.00 3.24
756 778 6.751514 AGGAATCGTGTTGCATAATAAACA 57.248 33.333 0.00 0.00 34.01 2.83
832 857 3.489355 ACCTTTGCACATCTCATCACAA 58.511 40.909 0.00 0.00 0.00 3.33
866 891 1.739067 GGATCCGTTCCCTCACAAAG 58.261 55.000 0.00 0.00 38.75 2.77
921 946 0.317269 CAGAAGCCACAACGCAACAG 60.317 55.000 0.00 0.00 0.00 3.16
924 949 0.381801 AAGCCACAACGCAACAGAAG 59.618 50.000 0.00 0.00 0.00 2.85
978 1004 3.097728 CGTCACACGGTCACGCTC 61.098 66.667 0.00 0.00 46.04 5.03
979 1005 2.027024 GTCACACGGTCACGCTCA 59.973 61.111 0.00 0.00 46.04 4.26
980 1006 2.027024 TCACACGGTCACGCTCAC 59.973 61.111 0.00 0.00 46.04 3.51
991 1017 2.029288 ACGCTCACGCCACATCAAG 61.029 57.895 0.00 0.00 45.53 3.02
1010 1036 0.032117 GCCTCCCCATAAAAAGGCCT 60.032 55.000 0.00 0.00 46.97 5.19
1063 1089 1.434188 TCCTAATCCATGGACGCCAT 58.566 50.000 18.99 0.00 46.37 4.40
1403 1438 0.323629 AAAGAATTCCGTGCCCTCGA 59.676 50.000 0.65 0.00 0.00 4.04
1458 1539 1.495579 AATCTGGTGGGCTGCAGACT 61.496 55.000 21.42 0.00 0.00 3.24
1592 1673 1.750930 CCATCGTCCTCATCTGGGG 59.249 63.158 0.00 0.00 0.00 4.96
1752 1833 2.994995 ATCGTCCTGCCCGTGACA 60.995 61.111 0.00 0.00 0.00 3.58
2025 2106 9.315363 TGGTTGGTATATACTCCAAAACAAAAT 57.685 29.630 12.54 0.00 43.89 1.82
2059 2140 9.726438 TTAGTATTTCCTTTTCTTCTTCTCTGG 57.274 33.333 0.00 0.00 0.00 3.86
2060 2141 7.750655 AGTATTTCCTTTTCTTCTTCTCTGGT 58.249 34.615 0.00 0.00 0.00 4.00
2061 2142 8.881262 AGTATTTCCTTTTCTTCTTCTCTGGTA 58.119 33.333 0.00 0.00 0.00 3.25
2062 2143 7.987750 ATTTCCTTTTCTTCTTCTCTGGTAC 57.012 36.000 0.00 0.00 0.00 3.34
2063 2144 6.749036 TTCCTTTTCTTCTTCTCTGGTACT 57.251 37.500 0.00 0.00 0.00 2.73
2064 2145 6.347859 TCCTTTTCTTCTTCTCTGGTACTC 57.652 41.667 0.00 0.00 0.00 2.59
2065 2146 5.246429 TCCTTTTCTTCTTCTCTGGTACTCC 59.754 44.000 0.00 0.00 0.00 3.85
2070 2151 9.716556 TTTTCTTCTTCTCTGGTACTCCTATAT 57.283 33.333 0.00 0.00 34.23 0.86
2116 2201 7.175816 TGCAAGTTGGAATAATTACTGCTTGTA 59.824 33.333 4.75 0.00 34.89 2.41
2230 2315 6.095300 TCAATATGGTAAGCACAATGTTCTGG 59.905 38.462 0.00 0.00 0.00 3.86
2231 2316 1.885887 TGGTAAGCACAATGTTCTGGC 59.114 47.619 0.00 0.00 0.00 4.85
2238 2323 2.230992 GCACAATGTTCTGGCCATGTTA 59.769 45.455 5.51 0.00 0.00 2.41
2268 2354 7.383029 TCATGTGTGATTTCAGCTTCAAAAATC 59.617 33.333 11.16 11.16 39.01 2.17
2280 2366 6.198966 CAGCTTCAAAAATCAAACACACCTAC 59.801 38.462 0.00 0.00 0.00 3.18
2311 2397 3.969287 AGCTTGTTCTCTGCAGTATGA 57.031 42.857 14.67 8.09 39.69 2.15
2546 2634 4.217118 TCAGCTGATTCTTGCTCTTTTTCC 59.783 41.667 13.74 0.00 37.44 3.13
2760 2848 2.704572 CTGCCCATTCTCGGAATATCC 58.295 52.381 0.00 0.00 0.00 2.59
2778 2866 8.474025 GGAATATCCTACTTGATAGATGGACTG 58.526 40.741 0.00 0.00 32.53 3.51
2822 2910 7.671302 ACATAGTCTTCATTGTTCTACACAGT 58.329 34.615 0.00 0.00 36.48 3.55
2972 3060 0.892358 TCTCGGTGCGTTCTACCTGT 60.892 55.000 0.00 0.00 36.03 4.00
3001 3089 4.105733 TTGGCTGCGATGCTTGCG 62.106 61.111 0.00 0.00 34.24 4.85
3030 3118 3.941573 TCCACCTAAACGGAATGGTAAC 58.058 45.455 0.00 0.00 32.16 2.50
3049 3137 7.365840 GGTAACAACTTCTCCTACTCAATTG 57.634 40.000 0.00 0.00 0.00 2.32
3066 3159 6.166984 TCAATTGTTTTACCTGCCATTGAA 57.833 33.333 5.13 0.00 0.00 2.69
3067 3160 6.767456 TCAATTGTTTTACCTGCCATTGAAT 58.233 32.000 5.13 0.00 0.00 2.57
3068 3161 6.649973 TCAATTGTTTTACCTGCCATTGAATG 59.350 34.615 5.13 0.00 0.00 2.67
3069 3162 5.543507 TTGTTTTACCTGCCATTGAATGT 57.456 34.783 4.27 0.00 0.00 2.71
3070 3163 5.132897 TGTTTTACCTGCCATTGAATGTC 57.867 39.130 4.27 0.00 0.00 3.06
3143 3236 1.875963 CATCGTTTCCGGCAGCTTT 59.124 52.632 0.00 0.00 33.95 3.51
3173 3266 2.354510 GGTGCTGCTTACATTTATCGCA 59.645 45.455 0.00 0.00 0.00 5.10
3176 3269 2.975851 GCTGCTTACATTTATCGCATGC 59.024 45.455 7.91 7.91 0.00 4.06
3177 3270 3.558505 CTGCTTACATTTATCGCATGCC 58.441 45.455 13.15 0.00 0.00 4.40
3211 3304 6.004574 GGGAAAAGGAGGTAAATATAGCAGG 58.995 44.000 0.00 0.00 31.82 4.85
3218 3311 3.844804 AGGTAAATATAGCAGGCCTACCC 59.155 47.826 3.98 0.00 36.11 3.69
3370 3465 1.067693 CGTAGCAACGTGAAGCATCA 58.932 50.000 10.03 0.00 44.21 3.07
3375 3470 2.751259 AGCAACGTGAAGCATCAATCAT 59.249 40.909 10.03 0.00 37.30 2.45
3409 3504 0.867746 GCACTTGTGCGTTGATGAGA 59.132 50.000 10.06 0.00 0.00 3.27
3412 3507 2.481568 CACTTGTGCGTTGATGAGACAT 59.518 45.455 0.00 0.00 0.00 3.06
3413 3508 3.058708 CACTTGTGCGTTGATGAGACATT 60.059 43.478 0.00 0.00 0.00 2.71
3414 3509 3.187227 ACTTGTGCGTTGATGAGACATTC 59.813 43.478 0.00 0.00 0.00 2.67
3425 3523 3.777106 TGAGACATTCTTCAGCAAGGT 57.223 42.857 0.00 0.00 0.00 3.50
3552 3656 5.057819 TCATTCTTGCGGTAAGTGTGTAAA 58.942 37.500 5.74 0.00 37.65 2.01
3577 3681 4.237349 GCTCTTGCTATAGGAGACAGTC 57.763 50.000 1.04 0.00 34.59 3.51
3777 3881 3.390311 ACTCCCTCCGTTTCTTGTTAGTT 59.610 43.478 0.00 0.00 0.00 2.24
3785 3889 7.065324 CCTCCGTTTCTTGTTAGTTTGCATATA 59.935 37.037 0.00 0.00 0.00 0.86
3830 3936 7.228706 ACTTTGTAGTTTGACCAACTTCATAGG 59.771 37.037 15.37 6.64 43.89 2.57
3836 3942 8.250143 AGTTTGACCAACTTCATAGGAAAAAT 57.750 30.769 0.00 0.00 43.89 1.82
3871 3977 8.672214 TTCACAATACGAAATCAATGTCATTG 57.328 30.769 17.95 17.95 41.57 2.82
3878 3984 5.163488 ACGAAATCAATGTCATTGCATGGAT 60.163 36.000 19.02 5.89 40.28 3.41
3881 3987 6.419484 AATCAATGTCATTGCATGGATCAT 57.581 33.333 19.02 3.93 38.27 2.45
3883 3989 4.890581 TCAATGTCATTGCATGGATCATCA 59.109 37.500 19.02 0.00 40.05 3.07
3884 3990 5.361285 TCAATGTCATTGCATGGATCATCAA 59.639 36.000 19.02 0.00 40.05 2.57
3889 3995 7.430441 TGTCATTGCATGGATCATCAAATTAG 58.570 34.615 0.00 0.00 0.00 1.73
3965 4071 8.608844 AAATTTGGTCAAACTTTGTGTACAAA 57.391 26.923 9.56 9.56 37.02 2.83
3966 4072 7.589574 ATTTGGTCAAACTTTGTGTACAAAC 57.410 32.000 6.11 0.00 35.73 2.93
3967 4073 5.968528 TGGTCAAACTTTGTGTACAAACT 57.031 34.783 6.11 0.00 40.55 2.66
3968 4074 5.945155 TGGTCAAACTTTGTGTACAAACTC 58.055 37.500 6.11 0.00 40.55 3.01
3970 4076 6.016192 TGGTCAAACTTTGTGTACAAACTCAA 60.016 34.615 6.11 0.00 40.55 3.02
3972 4078 7.544217 GGTCAAACTTTGTGTACAAACTCAATT 59.456 33.333 6.11 0.00 40.55 2.32
3973 4079 9.562583 GTCAAACTTTGTGTACAAACTCAATTA 57.437 29.630 6.11 0.00 40.55 1.40
4035 4141 9.587772 GAATGTATTACATCACAGTAACAGACT 57.412 33.333 9.68 0.00 37.97 3.24
4046 4152 7.423199 TCACAGTAACAGACTAACAGTAACAG 58.577 38.462 0.00 0.00 35.64 3.16
4060 4166 9.367444 CTAACAGTAACAGGGAAACATAACTAG 57.633 37.037 0.00 0.00 0.00 2.57
4061 4167 7.549147 ACAGTAACAGGGAAACATAACTAGA 57.451 36.000 0.00 0.00 0.00 2.43
4062 4168 7.970102 ACAGTAACAGGGAAACATAACTAGAA 58.030 34.615 0.00 0.00 0.00 2.10
4126 4233 2.481952 ACTGTTTTCTCGAATGCTGAGC 59.518 45.455 0.00 0.00 33.41 4.26
4127 4234 2.740981 CTGTTTTCTCGAATGCTGAGCT 59.259 45.455 5.83 0.00 33.41 4.09
4130 4237 4.154717 GTTTTCTCGAATGCTGAGCTTTC 58.845 43.478 19.56 19.56 38.68 2.62
4131 4238 3.325293 TTCTCGAATGCTGAGCTTTCT 57.675 42.857 24.49 0.00 39.50 2.52
4132 4239 4.456280 TTCTCGAATGCTGAGCTTTCTA 57.544 40.909 24.49 16.16 39.50 2.10
4138 4246 5.470098 TCGAATGCTGAGCTTTCTAAAACTT 59.530 36.000 24.49 0.00 39.50 2.66
4140 4248 7.334421 TCGAATGCTGAGCTTTCTAAAACTTAT 59.666 33.333 24.49 0.00 39.50 1.73
4154 4262 9.809096 TTCTAAAACTTATTTGTTGCATTGTCA 57.191 25.926 0.00 0.00 0.00 3.58
4161 4269 8.143193 ACTTATTTGTTGCATTGTCATTCTCAA 58.857 29.630 0.00 0.00 0.00 3.02
4164 4272 5.518848 TGTTGCATTGTCATTCTCAAACT 57.481 34.783 0.00 0.00 0.00 2.66
4176 4284 4.380843 TTCTCAAACTGATGGCCCTTAA 57.619 40.909 0.00 0.00 0.00 1.85
4177 4285 3.955471 TCTCAAACTGATGGCCCTTAAG 58.045 45.455 0.00 0.00 0.00 1.85
4178 4286 3.330701 TCTCAAACTGATGGCCCTTAAGT 59.669 43.478 0.00 0.00 0.00 2.24
4179 4287 3.420893 TCAAACTGATGGCCCTTAAGTG 58.579 45.455 0.00 0.00 0.00 3.16
4180 4288 3.073798 TCAAACTGATGGCCCTTAAGTGA 59.926 43.478 0.00 0.00 0.00 3.41
4181 4289 3.806949 AACTGATGGCCCTTAAGTGAA 57.193 42.857 0.00 0.00 0.00 3.18
4182 4290 4.322057 AACTGATGGCCCTTAAGTGAAT 57.678 40.909 0.00 0.00 0.00 2.57
4186 4295 6.534634 ACTGATGGCCCTTAAGTGAATATAC 58.465 40.000 0.00 0.00 0.00 1.47
4190 4299 4.164604 TGGCCCTTAAGTGAATATACGGTT 59.835 41.667 0.00 0.00 0.00 4.44
4222 4331 9.919348 AAGAATTTTCATTTTTGTGACAAATCG 57.081 25.926 11.97 3.81 0.00 3.34
4226 4335 5.633996 TCATTTTTGTGACAAATCGTTGC 57.366 34.783 11.97 0.00 38.39 4.17
4227 4336 5.105063 TCATTTTTGTGACAAATCGTTGCA 58.895 33.333 11.97 0.00 38.39 4.08
4228 4337 5.752472 TCATTTTTGTGACAAATCGTTGCAT 59.248 32.000 11.97 0.00 38.39 3.96
4229 4338 5.386810 TTTTTGTGACAAATCGTTGCATG 57.613 34.783 11.97 0.00 38.39 4.06
4230 4339 2.702898 TGTGACAAATCGTTGCATGG 57.297 45.000 0.00 0.00 38.39 3.66
4246 4356 7.228507 TCGTTGCATGGATTTAATATGCTAGTT 59.771 33.333 12.20 0.00 45.53 2.24
4307 4417 6.489700 TCATGAACCAAGATGAAGCACTTTTA 59.510 34.615 0.00 0.00 0.00 1.52
4308 4418 6.899393 TGAACCAAGATGAAGCACTTTTAT 57.101 33.333 0.00 0.00 0.00 1.40
4342 4452 1.269257 GGAGAAGCCACACTGTTTTGC 60.269 52.381 0.00 0.00 36.34 3.68
4365 4476 8.984891 TGCAGATATAAAATGTGGAAAAACTG 57.015 30.769 0.00 0.00 0.00 3.16
4421 4532 7.787725 AAAATCGTCACCTTATCTTATGACC 57.212 36.000 0.00 0.00 38.59 4.02
4422 4533 4.563337 TCGTCACCTTATCTTATGACCG 57.437 45.455 0.00 0.00 38.59 4.79
4423 4534 3.949754 TCGTCACCTTATCTTATGACCGT 59.050 43.478 0.00 0.00 38.59 4.83
4424 4535 4.042398 CGTCACCTTATCTTATGACCGTG 58.958 47.826 0.00 0.00 38.59 4.94
4425 4536 4.369182 GTCACCTTATCTTATGACCGTGG 58.631 47.826 0.00 0.00 36.31 4.94
4426 4537 4.028131 TCACCTTATCTTATGACCGTGGT 58.972 43.478 0.00 0.00 0.00 4.16
4427 4538 4.468510 TCACCTTATCTTATGACCGTGGTT 59.531 41.667 0.00 0.00 0.00 3.67
4428 4539 5.046159 TCACCTTATCTTATGACCGTGGTTT 60.046 40.000 0.00 0.00 0.00 3.27
4429 4540 6.154877 TCACCTTATCTTATGACCGTGGTTTA 59.845 38.462 0.00 0.00 0.00 2.01
4430 4541 6.990349 CACCTTATCTTATGACCGTGGTTTAT 59.010 38.462 0.00 0.00 0.00 1.40
4431 4542 7.497909 CACCTTATCTTATGACCGTGGTTTATT 59.502 37.037 0.00 0.00 0.00 1.40
4432 4543 8.050930 ACCTTATCTTATGACCGTGGTTTATTT 58.949 33.333 0.00 0.00 0.00 1.40
4433 4544 8.899771 CCTTATCTTATGACCGTGGTTTATTTT 58.100 33.333 0.00 0.00 0.00 1.82
4434 4545 9.931210 CTTATCTTATGACCGTGGTTTATTTTC 57.069 33.333 0.00 0.00 0.00 2.29
4435 4546 6.411630 TCTTATGACCGTGGTTTATTTTCG 57.588 37.500 0.00 0.00 0.00 3.46
4436 4547 5.933463 TCTTATGACCGTGGTTTATTTTCGT 59.067 36.000 0.00 0.00 0.00 3.85
4437 4548 7.095910 TCTTATGACCGTGGTTTATTTTCGTA 58.904 34.615 0.00 0.00 0.00 3.43
4438 4549 7.601886 TCTTATGACCGTGGTTTATTTTCGTAA 59.398 33.333 0.00 0.00 0.00 3.18
4439 4550 6.746745 ATGACCGTGGTTTATTTTCGTAAT 57.253 33.333 0.00 0.00 0.00 1.89
4440 4551 5.929278 TGACCGTGGTTTATTTTCGTAATG 58.071 37.500 0.00 0.00 0.00 1.90
4441 4552 5.106634 TGACCGTGGTTTATTTTCGTAATGG 60.107 40.000 0.00 0.00 0.00 3.16
4442 4553 4.099824 CCGTGGTTTATTTTCGTAATGGC 58.900 43.478 0.00 0.00 0.00 4.40
4443 4554 4.142556 CCGTGGTTTATTTTCGTAATGGCT 60.143 41.667 0.00 0.00 0.00 4.75
4444 4555 5.395642 CGTGGTTTATTTTCGTAATGGCTT 58.604 37.500 0.00 0.00 0.00 4.35
4445 4556 5.859648 CGTGGTTTATTTTCGTAATGGCTTT 59.140 36.000 0.00 0.00 0.00 3.51
4446 4557 6.363896 CGTGGTTTATTTTCGTAATGGCTTTT 59.636 34.615 0.00 0.00 0.00 2.27
4447 4558 7.409980 CGTGGTTTATTTTCGTAATGGCTTTTC 60.410 37.037 0.00 0.00 0.00 2.29
4448 4559 7.382759 GTGGTTTATTTTCGTAATGGCTTTTCA 59.617 33.333 0.00 0.00 0.00 2.69
4449 4560 8.091449 TGGTTTATTTTCGTAATGGCTTTTCAT 58.909 29.630 0.00 0.00 0.00 2.57
4450 4561 8.379902 GGTTTATTTTCGTAATGGCTTTTCATG 58.620 33.333 0.00 0.00 0.00 3.07
4451 4562 8.921670 GTTTATTTTCGTAATGGCTTTTCATGT 58.078 29.630 0.00 0.00 0.00 3.21
4455 4566 8.873215 TTTTCGTAATGGCTTTTCATGTAAAA 57.127 26.923 0.00 1.88 35.74 1.52
4456 4567 9.482627 TTTTCGTAATGGCTTTTCATGTAAAAT 57.517 25.926 0.00 0.00 36.49 1.82
4457 4568 9.482627 TTTCGTAATGGCTTTTCATGTAAAATT 57.517 25.926 0.00 0.02 36.49 1.82
4458 4569 9.482627 TTCGTAATGGCTTTTCATGTAAAATTT 57.517 25.926 0.00 0.00 36.49 1.82
4459 4570 9.482627 TCGTAATGGCTTTTCATGTAAAATTTT 57.517 25.926 8.75 8.75 36.49 1.82
4460 4571 9.527566 CGTAATGGCTTTTCATGTAAAATTTTG 57.472 29.630 13.76 0.00 36.49 2.44
4463 4574 7.856145 TGGCTTTTCATGTAAAATTTTGTGT 57.144 28.000 13.76 0.00 36.49 3.72
4464 4575 8.273780 TGGCTTTTCATGTAAAATTTTGTGTT 57.726 26.923 13.76 0.00 36.49 3.32
4465 4576 8.394121 TGGCTTTTCATGTAAAATTTTGTGTTC 58.606 29.630 13.76 0.48 36.49 3.18
4466 4577 7.582319 GGCTTTTCATGTAAAATTTTGTGTTCG 59.418 33.333 13.76 0.00 36.49 3.95
4467 4578 8.113675 GCTTTTCATGTAAAATTTTGTGTTCGT 58.886 29.630 13.76 0.00 36.49 3.85
4468 4579 9.965748 CTTTTCATGTAAAATTTTGTGTTCGTT 57.034 25.926 13.76 0.00 36.49 3.85
4469 4580 9.746711 TTTTCATGTAAAATTTTGTGTTCGTTG 57.253 25.926 13.76 1.13 32.05 4.10
4470 4581 6.927746 TCATGTAAAATTTTGTGTTCGTTGC 58.072 32.000 13.76 0.00 0.00 4.17
4471 4582 6.754209 TCATGTAAAATTTTGTGTTCGTTGCT 59.246 30.769 13.76 0.00 0.00 3.91
4472 4583 6.561945 TGTAAAATTTTGTGTTCGTTGCTC 57.438 33.333 13.76 0.00 0.00 4.26
4473 4584 6.326375 TGTAAAATTTTGTGTTCGTTGCTCT 58.674 32.000 13.76 0.00 0.00 4.09
4474 4585 5.949233 AAAATTTTGTGTTCGTTGCTCTC 57.051 34.783 1.75 0.00 0.00 3.20
4475 4586 4.630894 AATTTTGTGTTCGTTGCTCTCA 57.369 36.364 0.00 0.00 0.00 3.27
4476 4587 4.630894 ATTTTGTGTTCGTTGCTCTCAA 57.369 36.364 0.00 0.00 0.00 3.02
4477 4588 4.630894 TTTTGTGTTCGTTGCTCTCAAT 57.369 36.364 0.00 0.00 34.29 2.57
4478 4589 4.630894 TTTGTGTTCGTTGCTCTCAATT 57.369 36.364 0.00 0.00 34.29 2.32
4479 4590 4.630894 TTGTGTTCGTTGCTCTCAATTT 57.369 36.364 0.00 0.00 34.29 1.82
4480 4591 4.209452 TGTGTTCGTTGCTCTCAATTTC 57.791 40.909 0.00 0.00 34.29 2.17
4481 4592 3.625313 TGTGTTCGTTGCTCTCAATTTCA 59.375 39.130 0.00 0.00 34.29 2.69
4482 4593 3.968724 GTGTTCGTTGCTCTCAATTTCAC 59.031 43.478 0.00 0.00 34.29 3.18
4483 4594 3.003275 TGTTCGTTGCTCTCAATTTCACC 59.997 43.478 0.00 0.00 34.29 4.02
4484 4595 3.126001 TCGTTGCTCTCAATTTCACCT 57.874 42.857 0.00 0.00 34.29 4.00
4485 4596 2.807967 TCGTTGCTCTCAATTTCACCTG 59.192 45.455 0.00 0.00 34.29 4.00
4486 4597 2.807967 CGTTGCTCTCAATTTCACCTGA 59.192 45.455 0.00 0.00 34.29 3.86
4487 4598 3.438087 CGTTGCTCTCAATTTCACCTGAT 59.562 43.478 0.00 0.00 34.29 2.90
4488 4599 4.670992 CGTTGCTCTCAATTTCACCTGATG 60.671 45.833 0.00 0.00 34.29 3.07
4489 4600 4.290711 TGCTCTCAATTTCACCTGATGA 57.709 40.909 0.00 0.00 34.65 2.92
4490 4601 4.851843 TGCTCTCAATTTCACCTGATGAT 58.148 39.130 0.00 0.00 37.11 2.45
4491 4602 5.258841 TGCTCTCAATTTCACCTGATGATT 58.741 37.500 0.00 0.00 37.11 2.57
4492 4603 5.356190 TGCTCTCAATTTCACCTGATGATTC 59.644 40.000 0.00 0.00 37.11 2.52
4493 4604 5.221009 GCTCTCAATTTCACCTGATGATTCC 60.221 44.000 0.00 0.00 37.11 3.01
4494 4605 6.070951 TCTCAATTTCACCTGATGATTCCT 57.929 37.500 0.00 0.00 37.11 3.36
4495 4606 7.199167 TCTCAATTTCACCTGATGATTCCTA 57.801 36.000 0.00 0.00 37.11 2.94
4496 4607 7.278135 TCTCAATTTCACCTGATGATTCCTAG 58.722 38.462 0.00 0.00 37.11 3.02
4497 4608 5.824624 TCAATTTCACCTGATGATTCCTAGC 59.175 40.000 0.00 0.00 37.11 3.42
4498 4609 4.842531 TTTCACCTGATGATTCCTAGCA 57.157 40.909 0.00 0.00 37.11 3.49
4499 4610 4.842531 TTCACCTGATGATTCCTAGCAA 57.157 40.909 0.00 0.00 37.11 3.91
4500 4611 5.378230 TTCACCTGATGATTCCTAGCAAT 57.622 39.130 0.00 0.00 37.11 3.56
4501 4612 4.711399 TCACCTGATGATTCCTAGCAATG 58.289 43.478 0.00 0.00 29.99 2.82
4502 4613 3.819337 CACCTGATGATTCCTAGCAATGG 59.181 47.826 0.00 0.00 0.00 3.16
4503 4614 3.718434 ACCTGATGATTCCTAGCAATGGA 59.282 43.478 0.00 0.00 0.00 3.41
4504 4615 4.353191 ACCTGATGATTCCTAGCAATGGAT 59.647 41.667 0.00 0.00 33.09 3.41
4505 4616 5.549228 ACCTGATGATTCCTAGCAATGGATA 59.451 40.000 0.00 0.00 33.09 2.59
4506 4617 5.879223 CCTGATGATTCCTAGCAATGGATAC 59.121 44.000 0.00 0.00 33.09 2.24
4525 4636 7.214467 GGATACAAACCTTGAATGTTGAAGA 57.786 36.000 0.00 0.00 0.00 2.87
4526 4637 7.657336 GGATACAAACCTTGAATGTTGAAGAA 58.343 34.615 0.00 0.00 0.00 2.52
4527 4638 8.306761 GGATACAAACCTTGAATGTTGAAGAAT 58.693 33.333 0.00 0.00 0.00 2.40
4530 4641 8.006298 ACAAACCTTGAATGTTGAAGAATACA 57.994 30.769 0.00 0.00 0.00 2.29
4531 4642 8.474025 ACAAACCTTGAATGTTGAAGAATACAA 58.526 29.630 0.00 0.00 0.00 2.41
4532 4643 8.971321 CAAACCTTGAATGTTGAAGAATACAAG 58.029 33.333 0.00 0.00 35.01 3.16
4533 4644 8.463930 AACCTTGAATGTTGAAGAATACAAGA 57.536 30.769 0.00 0.00 36.59 3.02
4534 4645 8.103948 ACCTTGAATGTTGAAGAATACAAGAG 57.896 34.615 0.00 0.00 36.59 2.85
4535 4646 7.025963 CCTTGAATGTTGAAGAATACAAGAGC 58.974 38.462 0.00 0.00 36.59 4.09
4536 4647 7.308770 CCTTGAATGTTGAAGAATACAAGAGCA 60.309 37.037 0.00 0.00 36.59 4.26
4537 4648 7.692460 TGAATGTTGAAGAATACAAGAGCAT 57.308 32.000 0.00 0.00 0.00 3.79
4538 4649 8.114331 TGAATGTTGAAGAATACAAGAGCATT 57.886 30.769 0.00 0.00 30.19 3.56
4539 4650 8.579006 TGAATGTTGAAGAATACAAGAGCATTT 58.421 29.630 0.00 0.00 28.83 2.32
4542 4653 7.530010 TGTTGAAGAATACAAGAGCATTTAGC 58.470 34.615 0.00 0.00 46.19 3.09
4554 4665 3.854286 GCATTTAGCATCAGCAATTGC 57.146 42.857 23.05 23.05 45.49 3.56
4556 4667 4.613944 GCATTTAGCATCAGCAATTGCTA 58.386 39.130 31.48 19.71 46.92 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.068472 ACCAACTCTCGCTACTTGACG 60.068 52.381 0.00 0.00 0.00 4.35
9 10 0.601558 TACCTGACACCAACTCTCGC 59.398 55.000 0.00 0.00 0.00 5.03
34 35 7.335627 TGTTGAACCCTTGTATATACCTGAAG 58.664 38.462 10.38 7.32 0.00 3.02
40 41 7.985184 TCATCACTGTTGAACCCTTGTATATAC 59.015 37.037 5.89 5.89 34.61 1.47
46 47 3.117888 AGTCATCACTGTTGAACCCTTGT 60.118 43.478 0.00 0.00 34.61 3.16
79 80 2.124695 CCTTAAGGACCAGCGCCC 60.125 66.667 17.21 0.00 37.39 6.13
83 84 1.745489 CGTGGCCTTAAGGACCAGC 60.745 63.158 27.83 21.97 44.80 4.85
101 102 0.514255 GCCGGGAAGTTTTCGTGTAC 59.486 55.000 2.18 0.00 0.00 2.90
103 104 0.393820 TAGCCGGGAAGTTTTCGTGT 59.606 50.000 2.18 0.00 0.00 4.49
148 149 2.264166 GCTGTCGCCTCTTCTGCT 59.736 61.111 0.00 0.00 0.00 4.24
150 151 2.507992 CCGCTGTCGCCTCTTCTG 60.508 66.667 0.00 0.00 0.00 3.02
171 172 2.786495 ATGAGAACGAGCCGCCGAT 61.786 57.895 8.04 0.00 0.00 4.18
187 188 4.091945 CACCGAACAATCACTACTGTCATG 59.908 45.833 0.00 0.00 0.00 3.07
191 192 2.870435 GCCACCGAACAATCACTACTGT 60.870 50.000 0.00 0.00 0.00 3.55
212 213 9.712305 ATATAAAAAGTACATCGAGATTCAGGG 57.288 33.333 0.00 0.00 0.00 4.45
242 244 8.336806 GTTCATCAGAAATAGAAAGCATCTCAG 58.663 37.037 0.00 0.00 36.12 3.35
334 347 5.607939 TCTAGCCGTGATATTCCAGAAAA 57.392 39.130 0.00 0.00 0.00 2.29
337 350 5.070446 ACAATTCTAGCCGTGATATTCCAGA 59.930 40.000 0.00 0.00 0.00 3.86
340 353 4.386049 CGACAATTCTAGCCGTGATATTCC 59.614 45.833 0.00 0.00 0.00 3.01
352 365 5.122239 TCAAACAATGCCTCGACAATTCTAG 59.878 40.000 0.00 0.00 0.00 2.43
355 368 3.914364 GTCAAACAATGCCTCGACAATTC 59.086 43.478 0.00 0.00 0.00 2.17
359 372 0.865111 CGTCAAACAATGCCTCGACA 59.135 50.000 0.00 0.00 0.00 4.35
385 398 1.923909 GGTTAGGGCCTGGACCTGT 60.924 63.158 32.00 8.71 43.53 4.00
423 436 2.165030 GTCGATGTCGTTCCCCTAAAGA 59.835 50.000 2.04 0.00 40.80 2.52
440 454 1.652124 GATTTAAGAACGCGCTGTCGA 59.348 47.619 5.73 0.00 38.10 4.20
453 467 7.727331 TTTGGCAAACTTTGATGGATTTAAG 57.273 32.000 8.93 0.00 0.00 1.85
541 556 0.179127 ATGTGATGCGACCGTGAGAG 60.179 55.000 0.00 0.00 0.00 3.20
544 559 0.037790 TTGATGTGATGCGACCGTGA 60.038 50.000 0.00 0.00 0.00 4.35
552 567 2.170166 TGGGAAGGTTTGATGTGATGC 58.830 47.619 0.00 0.00 0.00 3.91
646 662 0.739462 TCTGAAACGCCGCCATGTAG 60.739 55.000 0.00 0.00 0.00 2.74
667 683 1.272807 TTCGGAGGAGGTTTGTAGGG 58.727 55.000 0.00 0.00 0.00 3.53
670 686 4.069304 CACAAATTCGGAGGAGGTTTGTA 58.931 43.478 0.00 0.00 39.09 2.41
699 715 7.036220 CAGTCTATGTATCTGTTTTTCCGTCT 58.964 38.462 0.00 0.00 0.00 4.18
700 716 6.255887 CCAGTCTATGTATCTGTTTTTCCGTC 59.744 42.308 0.00 0.00 0.00 4.79
723 741 5.010112 TGCAACACGATTCCTTATTTTTCCA 59.990 36.000 0.00 0.00 0.00 3.53
756 778 2.803956 CGGATCAAGGTGTGTAAACGTT 59.196 45.455 0.00 0.00 0.00 3.99
781 803 2.414138 CGTCCCCAAAACGTCTGTAATC 59.586 50.000 0.00 0.00 35.47 1.75
851 876 1.880027 CTTTCCTTTGTGAGGGAACGG 59.120 52.381 0.00 0.00 46.31 4.44
876 901 1.872653 GCGTCACGAACCTCCTCTTTT 60.873 52.381 0.00 0.00 0.00 2.27
879 904 2.963371 GCGTCACGAACCTCCTCT 59.037 61.111 0.00 0.00 0.00 3.69
910 935 1.742831 TCTTTGCTTCTGTTGCGTTGT 59.257 42.857 0.00 0.00 0.00 3.32
921 946 2.029918 ACCGCTGGATTTTCTTTGCTTC 60.030 45.455 1.50 0.00 0.00 3.86
924 949 1.669795 CCACCGCTGGATTTTCTTTGC 60.670 52.381 0.00 0.00 40.55 3.68
976 1002 1.364626 GAGGCTTGATGTGGCGTGAG 61.365 60.000 0.00 0.00 35.01 3.51
977 1003 1.375908 GAGGCTTGATGTGGCGTGA 60.376 57.895 0.00 0.00 35.01 4.35
978 1004 2.401766 GGAGGCTTGATGTGGCGTG 61.402 63.158 0.00 0.00 35.01 5.34
979 1005 2.045926 GGAGGCTTGATGTGGCGT 60.046 61.111 0.00 0.00 35.01 5.68
980 1006 2.825836 GGGAGGCTTGATGTGGCG 60.826 66.667 0.00 0.00 35.01 5.69
984 1010 3.756082 TTTTATGGGGAGGCTTGATGT 57.244 42.857 0.00 0.00 0.00 3.06
1381 1416 2.745281 CGAGGGCACGGAATTCTTTAAA 59.255 45.455 5.23 0.00 0.00 1.52
1382 1417 2.027929 TCGAGGGCACGGAATTCTTTAA 60.028 45.455 5.23 0.00 0.00 1.52
1403 1438 0.674895 GCAATCGGCTGTCTCCAAGT 60.675 55.000 0.00 0.00 40.25 3.16
1423 1467 7.377398 CCACCAGATTAATCAATCAACAAACA 58.623 34.615 17.56 0.00 42.66 2.83
1424 1468 6.813152 CCCACCAGATTAATCAATCAACAAAC 59.187 38.462 17.56 0.00 42.66 2.93
1425 1469 6.574073 GCCCACCAGATTAATCAATCAACAAA 60.574 38.462 17.56 0.00 42.66 2.83
1426 1470 5.105392 GCCCACCAGATTAATCAATCAACAA 60.105 40.000 17.56 0.00 42.66 2.83
1427 1471 4.402155 GCCCACCAGATTAATCAATCAACA 59.598 41.667 17.56 0.00 42.66 3.33
1428 1472 4.646492 AGCCCACCAGATTAATCAATCAAC 59.354 41.667 17.56 1.89 42.66 3.18
1429 1473 4.646040 CAGCCCACCAGATTAATCAATCAA 59.354 41.667 17.56 0.00 42.66 2.57
1592 1673 3.134127 GGATCCTGGCGGTGTTGC 61.134 66.667 3.84 0.00 0.00 4.17
2116 2201 0.892358 CCACTCCAAGCTGCACATGT 60.892 55.000 1.02 0.00 0.00 3.21
2230 2315 8.136800 TGAAATCACACATGATATTAACATGGC 58.863 33.333 15.73 0.00 45.26 4.40
2231 2316 9.673454 CTGAAATCACACATGATATTAACATGG 57.327 33.333 15.73 8.88 45.26 3.66
2238 2323 7.634671 TGAAGCTGAAATCACACATGATATT 57.365 32.000 0.00 0.00 45.26 1.28
2305 2391 7.620094 AGGGATCAACTAAGTACAGTTCATACT 59.380 37.037 0.00 0.00 36.61 2.12
2306 2392 7.783042 AGGGATCAACTAAGTACAGTTCATAC 58.217 38.462 0.00 0.00 36.61 2.39
2307 2393 7.973048 AGGGATCAACTAAGTACAGTTCATA 57.027 36.000 0.00 0.00 36.61 2.15
2308 2394 6.875972 AGGGATCAACTAAGTACAGTTCAT 57.124 37.500 0.00 0.00 36.61 2.57
2309 2395 6.681729 AAGGGATCAACTAAGTACAGTTCA 57.318 37.500 0.00 0.00 36.61 3.18
2310 2396 7.573283 GCAAAAGGGATCAACTAAGTACAGTTC 60.573 40.741 0.00 0.00 36.61 3.01
2311 2397 6.206829 GCAAAAGGGATCAACTAAGTACAGTT 59.793 38.462 0.00 0.00 39.34 3.16
2326 2412 2.562738 GTGTTAAGGCTGCAAAAGGGAT 59.437 45.455 0.50 0.00 0.00 3.85
2416 2502 6.975196 TTGGATTCAGAATTGGTCTTTTGA 57.025 33.333 0.00 0.00 32.70 2.69
2472 2558 9.912634 CTTATGAAAATTCAAACTGTACCACAT 57.087 29.630 0.00 0.00 41.13 3.21
2473 2559 8.908903 ACTTATGAAAATTCAAACTGTACCACA 58.091 29.630 0.00 0.00 41.13 4.17
2474 2560 9.394477 GACTTATGAAAATTCAAACTGTACCAC 57.606 33.333 0.00 0.00 41.13 4.16
2475 2561 8.573035 GGACTTATGAAAATTCAAACTGTACCA 58.427 33.333 0.00 0.00 41.13 3.25
2521 2609 2.027003 AGAGCAAGAATCAGCTGAGC 57.973 50.000 22.96 18.65 42.04 4.26
2637 2725 3.532542 GGCTAACACCAATCCTACAGAC 58.467 50.000 0.00 0.00 0.00 3.51
2760 2848 5.163468 ACTGTGCAGTCCATCTATCAAGTAG 60.163 44.000 0.00 0.00 36.92 2.57
2778 2866 3.728845 TGTACCTGAAAGAGAACTGTGC 58.271 45.455 0.00 0.00 34.07 4.57
2947 3035 0.603569 AGAACGCACCGAGATTCACT 59.396 50.000 0.00 0.00 0.00 3.41
2972 3060 0.684153 GCAGCCAAGGGAATGCCTAA 60.684 55.000 0.00 0.00 32.97 2.69
3001 3089 3.469739 TCCGTTTAGGTGGAAGACAAAC 58.530 45.455 0.00 0.00 41.99 2.93
3030 3118 8.290325 GGTAAAACAATTGAGTAGGAGAAGTTG 58.710 37.037 13.59 0.00 0.00 3.16
3049 3137 5.132897 TGACATTCAATGGCAGGTAAAAC 57.867 39.130 0.12 0.00 45.06 2.43
3066 3159 5.104235 TCAGATTTCAGGACATCCATGACAT 60.104 40.000 0.00 0.61 38.89 3.06
3067 3160 4.225717 TCAGATTTCAGGACATCCATGACA 59.774 41.667 0.00 0.00 38.89 3.58
3068 3161 4.774124 TCAGATTTCAGGACATCCATGAC 58.226 43.478 0.00 0.00 38.89 3.06
3069 3162 5.440207 TTCAGATTTCAGGACATCCATGA 57.560 39.130 0.00 0.00 38.89 3.07
3070 3163 5.651139 AGTTTCAGATTTCAGGACATCCATG 59.349 40.000 0.00 0.00 38.89 3.66
3173 3266 2.363306 TTTCCCAATCTATGCGGCAT 57.637 45.000 20.57 20.57 0.00 4.40
3176 3269 2.880890 CTCCTTTTCCCAATCTATGCGG 59.119 50.000 0.00 0.00 0.00 5.69
3177 3270 2.880890 CCTCCTTTTCCCAATCTATGCG 59.119 50.000 0.00 0.00 0.00 4.73
3211 3304 0.682292 GCTCCTAGTGATGGGTAGGC 59.318 60.000 0.00 0.00 36.49 3.93
3218 3311 4.940046 ACAATGAAACTGCTCCTAGTGATG 59.060 41.667 0.00 0.00 0.00 3.07
3370 3465 5.065914 GTGCCATAGTGTATCCACATGATT 58.934 41.667 0.00 0.00 44.39 2.57
3375 3470 3.263170 ACAAGTGCCATAGTGTATCCACA 59.737 43.478 0.00 0.00 44.39 4.17
3397 3492 3.663025 TGAAGAATGTCTCATCAACGCA 58.337 40.909 0.00 0.00 28.94 5.24
3409 3504 2.224281 TGTCGACCTTGCTGAAGAATGT 60.224 45.455 14.12 0.00 0.00 2.71
3412 3507 2.839486 ATGTCGACCTTGCTGAAGAA 57.161 45.000 14.12 0.00 0.00 2.52
3413 3508 3.430790 CCATATGTCGACCTTGCTGAAGA 60.431 47.826 14.12 0.00 0.00 2.87
3414 3509 2.868583 CCATATGTCGACCTTGCTGAAG 59.131 50.000 14.12 0.00 0.00 3.02
3425 3523 1.886542 CATCCGAGGACCATATGTCGA 59.113 52.381 13.33 2.81 45.46 4.20
3577 3681 1.137404 GCGCATTGCTTACCCACAG 59.863 57.895 0.30 0.00 41.73 3.66
3836 3942 9.103861 TGATTTCGTATTGTGAATGTTGCTATA 57.896 29.630 0.00 0.00 0.00 1.31
3840 3946 6.926280 TTGATTTCGTATTGTGAATGTTGC 57.074 33.333 0.00 0.00 0.00 4.17
3871 3977 8.882415 ATGAAAACTAATTTGATGATCCATGC 57.118 30.769 0.00 0.00 0.00 4.06
3939 4045 8.608844 TTGTACACAAAGTTTGACCAAATTTT 57.391 26.923 22.23 9.27 39.67 1.82
3947 4053 8.460831 AATTGAGTTTGTACACAAAGTTTGAC 57.539 30.769 22.23 10.39 46.22 3.18
4025 4131 6.073314 TCCCTGTTACTGTTAGTCTGTTACT 58.927 40.000 0.00 0.00 42.62 2.24
4029 4135 5.129815 TGTTTCCCTGTTACTGTTAGTCTGT 59.870 40.000 0.00 0.00 0.00 3.41
4030 4136 5.607477 TGTTTCCCTGTTACTGTTAGTCTG 58.393 41.667 0.00 0.00 0.00 3.51
4035 4141 9.092338 TCTAGTTATGTTTCCCTGTTACTGTTA 57.908 33.333 0.00 0.00 0.00 2.41
4071 4177 7.015226 TGTGACACACTGTATTTTTCTTCAG 57.985 36.000 3.56 0.00 35.11 3.02
4072 4178 6.993786 TGTGACACACTGTATTTTTCTTCA 57.006 33.333 3.56 0.00 35.11 3.02
4076 4182 9.730420 AAAAGTATGTGACACACTGTATTTTTC 57.270 29.630 11.22 0.00 35.11 2.29
4107 4214 2.771089 AGCTCAGCATTCGAGAAAACA 58.229 42.857 0.00 0.00 31.84 2.83
4110 4217 3.668447 AGAAAGCTCAGCATTCGAGAAA 58.332 40.909 8.92 0.00 40.52 2.52
4132 4239 9.328845 AGAATGACAATGCAACAAATAAGTTTT 57.671 25.926 0.00 0.00 0.00 2.43
4138 4246 8.143193 AGTTTGAGAATGACAATGCAACAAATA 58.857 29.630 0.00 0.00 0.00 1.40
4140 4248 6.256104 CAGTTTGAGAATGACAATGCAACAAA 59.744 34.615 0.00 0.00 0.00 2.83
4154 4262 3.463048 AAGGGCCATCAGTTTGAGAAT 57.537 42.857 6.18 0.00 0.00 2.40
4161 4269 3.806949 TTCACTTAAGGGCCATCAGTT 57.193 42.857 6.18 0.00 0.00 3.16
4164 4272 5.512404 CCGTATATTCACTTAAGGGCCATCA 60.512 44.000 6.18 0.00 0.00 3.07
4199 4308 9.488124 CAACGATTTGTCACAAAAATGAAAATT 57.512 25.926 7.14 0.00 0.00 1.82
4200 4309 7.639461 GCAACGATTTGTCACAAAAATGAAAAT 59.361 29.630 7.14 0.00 34.90 1.82
4201 4310 6.958193 GCAACGATTTGTCACAAAAATGAAAA 59.042 30.769 7.14 0.00 34.90 2.29
4202 4311 6.091305 TGCAACGATTTGTCACAAAAATGAAA 59.909 30.769 7.14 0.00 34.90 2.69
4203 4312 5.578336 TGCAACGATTTGTCACAAAAATGAA 59.422 32.000 7.14 0.00 34.90 2.57
4204 4313 5.105063 TGCAACGATTTGTCACAAAAATGA 58.895 33.333 7.14 0.00 34.90 2.57
4205 4314 5.386810 TGCAACGATTTGTCACAAAAATG 57.613 34.783 7.14 5.47 34.90 2.32
4206 4315 5.050227 CCATGCAACGATTTGTCACAAAAAT 60.050 36.000 7.14 0.00 34.90 1.82
4207 4316 4.269603 CCATGCAACGATTTGTCACAAAAA 59.730 37.500 7.14 0.00 34.90 1.94
4208 4317 3.801050 CCATGCAACGATTTGTCACAAAA 59.199 39.130 7.14 0.00 34.90 2.44
4221 4330 6.902341 ACTAGCATATTAAATCCATGCAACG 58.098 36.000 8.34 0.00 45.95 4.10
4246 4356 6.127366 GGCATCCAAGGAAGATGAAAACAATA 60.127 38.462 4.98 0.00 43.15 1.90
4250 4360 3.511146 TGGCATCCAAGGAAGATGAAAAC 59.489 43.478 4.98 0.00 43.15 2.43
4321 4431 2.023673 CAAAACAGTGTGGCTTCTCCA 58.976 47.619 0.00 0.00 44.18 3.86
4339 4449 9.421806 CAGTTTTTCCACATTTTATATCTGCAA 57.578 29.630 0.00 0.00 0.00 4.08
4348 4458 9.039870 CAAATGTAGCAGTTTTTCCACATTTTA 57.960 29.630 7.54 0.00 41.93 1.52
4395 4506 9.321562 GGTCATAAGATAAGGTGACGATTTTAA 57.678 33.333 0.00 0.00 41.33 1.52
4396 4507 7.650504 CGGTCATAAGATAAGGTGACGATTTTA 59.349 37.037 0.00 0.00 41.33 1.52
4397 4508 6.479001 CGGTCATAAGATAAGGTGACGATTTT 59.521 38.462 0.00 0.00 41.33 1.82
4398 4509 5.983720 CGGTCATAAGATAAGGTGACGATTT 59.016 40.000 0.00 0.00 41.33 2.17
4399 4510 5.068723 ACGGTCATAAGATAAGGTGACGATT 59.931 40.000 0.00 0.00 41.33 3.34
4400 4511 4.583489 ACGGTCATAAGATAAGGTGACGAT 59.417 41.667 0.00 0.00 41.33 3.73
4401 4512 3.949754 ACGGTCATAAGATAAGGTGACGA 59.050 43.478 0.00 0.00 41.33 4.20
4402 4513 4.042398 CACGGTCATAAGATAAGGTGACG 58.958 47.826 0.00 0.00 41.33 4.35
4403 4514 4.142004 ACCACGGTCATAAGATAAGGTGAC 60.142 45.833 0.00 0.00 40.07 3.67
4404 4515 4.028131 ACCACGGTCATAAGATAAGGTGA 58.972 43.478 0.00 0.00 0.00 4.02
4405 4516 4.402056 ACCACGGTCATAAGATAAGGTG 57.598 45.455 0.00 0.00 0.00 4.00
4406 4517 5.431179 AAACCACGGTCATAAGATAAGGT 57.569 39.130 0.00 0.00 0.00 3.50
4407 4518 8.446599 AAATAAACCACGGTCATAAGATAAGG 57.553 34.615 0.00 0.00 0.00 2.69
4408 4519 9.931210 GAAAATAAACCACGGTCATAAGATAAG 57.069 33.333 0.00 0.00 0.00 1.73
4409 4520 8.605746 CGAAAATAAACCACGGTCATAAGATAA 58.394 33.333 0.00 0.00 0.00 1.75
4410 4521 7.765360 ACGAAAATAAACCACGGTCATAAGATA 59.235 33.333 0.00 0.00 0.00 1.98
4411 4522 6.596497 ACGAAAATAAACCACGGTCATAAGAT 59.404 34.615 0.00 0.00 0.00 2.40
4412 4523 5.933463 ACGAAAATAAACCACGGTCATAAGA 59.067 36.000 0.00 0.00 0.00 2.10
4413 4524 6.173191 ACGAAAATAAACCACGGTCATAAG 57.827 37.500 0.00 0.00 0.00 1.73
4414 4525 7.664082 TTACGAAAATAAACCACGGTCATAA 57.336 32.000 0.00 0.00 0.00 1.90
4415 4526 7.201626 CCATTACGAAAATAAACCACGGTCATA 60.202 37.037 0.00 0.00 0.00 2.15
4416 4527 6.403855 CCATTACGAAAATAAACCACGGTCAT 60.404 38.462 0.00 0.00 0.00 3.06
4417 4528 5.106634 CCATTACGAAAATAAACCACGGTCA 60.107 40.000 0.00 0.00 0.00 4.02
4418 4529 5.326292 CCATTACGAAAATAAACCACGGTC 58.674 41.667 0.00 0.00 0.00 4.79
4419 4530 4.379708 GCCATTACGAAAATAAACCACGGT 60.380 41.667 0.00 0.00 0.00 4.83
4420 4531 4.099824 GCCATTACGAAAATAAACCACGG 58.900 43.478 0.00 0.00 0.00 4.94
4421 4532 4.976987 AGCCATTACGAAAATAAACCACG 58.023 39.130 0.00 0.00 0.00 4.94
4422 4533 7.382759 TGAAAAGCCATTACGAAAATAAACCAC 59.617 33.333 0.00 0.00 0.00 4.16
4423 4534 7.434492 TGAAAAGCCATTACGAAAATAAACCA 58.566 30.769 0.00 0.00 0.00 3.67
4424 4535 7.876896 TGAAAAGCCATTACGAAAATAAACC 57.123 32.000 0.00 0.00 0.00 3.27
4425 4536 8.921670 ACATGAAAAGCCATTACGAAAATAAAC 58.078 29.630 0.00 0.00 0.00 2.01
4429 4540 9.482627 TTTTACATGAAAAGCCATTACGAAAAT 57.517 25.926 0.00 0.00 31.90 1.82
4430 4541 8.873215 TTTTACATGAAAAGCCATTACGAAAA 57.127 26.923 0.00 0.00 31.90 2.29
4431 4542 9.482627 AATTTTACATGAAAAGCCATTACGAAA 57.517 25.926 0.00 0.00 40.34 3.46
4432 4543 9.482627 AAATTTTACATGAAAAGCCATTACGAA 57.517 25.926 0.00 0.00 40.34 3.85
4433 4544 9.482627 AAAATTTTACATGAAAAGCCATTACGA 57.517 25.926 0.37 0.00 40.34 3.43
4434 4545 9.527566 CAAAATTTTACATGAAAAGCCATTACG 57.472 29.630 2.44 0.00 40.34 3.18
4437 4548 8.901793 ACACAAAATTTTACATGAAAAGCCATT 58.098 25.926 2.44 0.00 40.34 3.16
4438 4549 8.449251 ACACAAAATTTTACATGAAAAGCCAT 57.551 26.923 2.44 0.00 40.34 4.40
4439 4550 7.856145 ACACAAAATTTTACATGAAAAGCCA 57.144 28.000 2.44 0.00 40.34 4.75
4440 4551 7.582319 CGAACACAAAATTTTACATGAAAAGCC 59.418 33.333 2.44 0.00 40.34 4.35
4441 4552 8.113675 ACGAACACAAAATTTTACATGAAAAGC 58.886 29.630 2.44 0.00 40.34 3.51
4442 4553 9.965748 AACGAACACAAAATTTTACATGAAAAG 57.034 25.926 2.44 0.00 40.34 2.27
4443 4554 9.746711 CAACGAACACAAAATTTTACATGAAAA 57.253 25.926 2.44 2.61 41.24 2.29
4444 4555 7.900352 GCAACGAACACAAAATTTTACATGAAA 59.100 29.630 2.44 0.00 0.00 2.69
4445 4556 7.276658 AGCAACGAACACAAAATTTTACATGAA 59.723 29.630 2.44 0.00 0.00 2.57
4446 4557 6.754209 AGCAACGAACACAAAATTTTACATGA 59.246 30.769 2.44 0.00 0.00 3.07
4447 4558 6.932051 AGCAACGAACACAAAATTTTACATG 58.068 32.000 2.44 5.42 0.00 3.21
4448 4559 6.978080 AGAGCAACGAACACAAAATTTTACAT 59.022 30.769 2.44 0.00 0.00 2.29
4449 4560 6.326375 AGAGCAACGAACACAAAATTTTACA 58.674 32.000 2.44 0.00 0.00 2.41
4450 4561 6.470877 TGAGAGCAACGAACACAAAATTTTAC 59.529 34.615 2.44 0.00 0.00 2.01
4451 4562 6.556212 TGAGAGCAACGAACACAAAATTTTA 58.444 32.000 2.44 0.00 0.00 1.52
4452 4563 5.406649 TGAGAGCAACGAACACAAAATTTT 58.593 33.333 0.00 0.00 0.00 1.82
4453 4564 4.992688 TGAGAGCAACGAACACAAAATTT 58.007 34.783 0.00 0.00 0.00 1.82
4454 4565 4.630894 TGAGAGCAACGAACACAAAATT 57.369 36.364 0.00 0.00 0.00 1.82
4455 4566 4.630894 TTGAGAGCAACGAACACAAAAT 57.369 36.364 0.00 0.00 0.00 1.82
4456 4567 4.630894 ATTGAGAGCAACGAACACAAAA 57.369 36.364 0.00 0.00 36.72 2.44
4457 4568 4.630894 AATTGAGAGCAACGAACACAAA 57.369 36.364 0.00 0.00 36.72 2.83
4458 4569 4.095632 TGAAATTGAGAGCAACGAACACAA 59.904 37.500 0.00 0.00 36.72 3.33
4459 4570 3.625313 TGAAATTGAGAGCAACGAACACA 59.375 39.130 0.00 0.00 36.72 3.72
4460 4571 3.968724 GTGAAATTGAGAGCAACGAACAC 59.031 43.478 0.00 0.00 36.72 3.32
4461 4572 3.003275 GGTGAAATTGAGAGCAACGAACA 59.997 43.478 0.00 0.00 36.72 3.18
4462 4573 3.251004 AGGTGAAATTGAGAGCAACGAAC 59.749 43.478 0.00 0.00 36.72 3.95
4463 4574 3.250762 CAGGTGAAATTGAGAGCAACGAA 59.749 43.478 0.00 0.00 36.72 3.85
4464 4575 2.807967 CAGGTGAAATTGAGAGCAACGA 59.192 45.455 0.00 0.00 36.72 3.85
4465 4576 2.807967 TCAGGTGAAATTGAGAGCAACG 59.192 45.455 0.00 0.00 36.72 4.10
4466 4577 4.456911 TCATCAGGTGAAATTGAGAGCAAC 59.543 41.667 0.00 0.00 33.21 4.17
4467 4578 4.654915 TCATCAGGTGAAATTGAGAGCAA 58.345 39.130 0.00 0.00 34.29 3.91
4468 4579 4.290711 TCATCAGGTGAAATTGAGAGCA 57.709 40.909 0.00 0.00 32.78 4.26
4469 4580 5.221009 GGAATCATCAGGTGAAATTGAGAGC 60.221 44.000 0.00 0.00 40.97 4.09
4470 4581 6.120905 AGGAATCATCAGGTGAAATTGAGAG 58.879 40.000 0.00 0.00 40.97 3.20
4471 4582 6.070951 AGGAATCATCAGGTGAAATTGAGA 57.929 37.500 0.00 0.00 40.97 3.27
4472 4583 6.017275 GCTAGGAATCATCAGGTGAAATTGAG 60.017 42.308 0.00 0.00 40.97 3.02
4473 4584 5.824624 GCTAGGAATCATCAGGTGAAATTGA 59.175 40.000 0.00 0.00 40.97 2.57
4474 4585 5.591472 TGCTAGGAATCATCAGGTGAAATTG 59.409 40.000 0.00 0.00 40.97 2.32
4475 4586 5.759059 TGCTAGGAATCATCAGGTGAAATT 58.241 37.500 0.00 0.00 40.97 1.82
4476 4587 5.378230 TGCTAGGAATCATCAGGTGAAAT 57.622 39.130 0.00 0.00 40.97 2.17
4477 4588 4.842531 TGCTAGGAATCATCAGGTGAAA 57.157 40.909 0.00 0.00 40.97 2.69
4478 4589 4.842531 TTGCTAGGAATCATCAGGTGAA 57.157 40.909 0.00 0.00 40.97 3.18
4479 4590 4.445305 CCATTGCTAGGAATCATCAGGTGA 60.445 45.833 6.49 0.00 42.06 4.02
4480 4591 3.819337 CCATTGCTAGGAATCATCAGGTG 59.181 47.826 6.49 0.00 0.00 4.00
4481 4592 3.718434 TCCATTGCTAGGAATCATCAGGT 59.282 43.478 6.49 0.00 30.71 4.00
4482 4593 4.362470 TCCATTGCTAGGAATCATCAGG 57.638 45.455 6.49 5.31 30.71 3.86
4483 4594 6.470278 TGTATCCATTGCTAGGAATCATCAG 58.530 40.000 6.49 0.00 38.93 2.90
4484 4595 6.438186 TGTATCCATTGCTAGGAATCATCA 57.562 37.500 6.49 0.56 38.93 3.07
4485 4596 7.308830 GGTTTGTATCCATTGCTAGGAATCATC 60.309 40.741 6.49 0.00 38.93 2.92
4486 4597 6.491403 GGTTTGTATCCATTGCTAGGAATCAT 59.509 38.462 6.49 5.03 38.93 2.45
4487 4598 5.827797 GGTTTGTATCCATTGCTAGGAATCA 59.172 40.000 6.49 0.00 38.93 2.57
4488 4599 6.064717 AGGTTTGTATCCATTGCTAGGAATC 58.935 40.000 6.49 0.00 38.93 2.52
4489 4600 6.018433 AGGTTTGTATCCATTGCTAGGAAT 57.982 37.500 3.24 3.24 38.93 3.01
4490 4601 5.450818 AGGTTTGTATCCATTGCTAGGAA 57.549 39.130 0.00 0.00 38.93 3.36
4491 4602 5.045213 TCAAGGTTTGTATCCATTGCTAGGA 60.045 40.000 0.00 0.00 39.97 2.94
4492 4603 5.192927 TCAAGGTTTGTATCCATTGCTAGG 58.807 41.667 0.00 0.00 0.00 3.02
4493 4604 6.757897 TTCAAGGTTTGTATCCATTGCTAG 57.242 37.500 0.00 0.00 0.00 3.42
4494 4605 6.663093 ACATTCAAGGTTTGTATCCATTGCTA 59.337 34.615 0.00 0.00 0.00 3.49
4495 4606 5.481473 ACATTCAAGGTTTGTATCCATTGCT 59.519 36.000 0.00 0.00 0.00 3.91
4496 4607 5.723295 ACATTCAAGGTTTGTATCCATTGC 58.277 37.500 0.00 0.00 0.00 3.56
4497 4608 7.377398 TCAACATTCAAGGTTTGTATCCATTG 58.623 34.615 0.00 0.00 0.00 2.82
4498 4609 7.537596 TCAACATTCAAGGTTTGTATCCATT 57.462 32.000 0.00 0.00 0.00 3.16
4499 4610 7.451255 TCTTCAACATTCAAGGTTTGTATCCAT 59.549 33.333 0.00 0.00 0.00 3.41
4500 4611 6.775142 TCTTCAACATTCAAGGTTTGTATCCA 59.225 34.615 0.00 0.00 0.00 3.41
4501 4612 7.214467 TCTTCAACATTCAAGGTTTGTATCC 57.786 36.000 0.00 0.00 0.00 2.59
4504 4615 9.126151 TGTATTCTTCAACATTCAAGGTTTGTA 57.874 29.630 0.00 0.00 0.00 2.41
4505 4616 8.006298 TGTATTCTTCAACATTCAAGGTTTGT 57.994 30.769 0.00 0.00 0.00 2.83
4506 4617 8.870160 TTGTATTCTTCAACATTCAAGGTTTG 57.130 30.769 0.00 0.00 0.00 2.93
4507 4618 8.912988 TCTTGTATTCTTCAACATTCAAGGTTT 58.087 29.630 0.00 0.00 34.01 3.27
4508 4619 8.463930 TCTTGTATTCTTCAACATTCAAGGTT 57.536 30.769 0.00 0.00 34.01 3.50
4509 4620 7.308830 GCTCTTGTATTCTTCAACATTCAAGGT 60.309 37.037 0.00 0.00 34.01 3.50
4510 4621 7.025963 GCTCTTGTATTCTTCAACATTCAAGG 58.974 38.462 0.00 0.00 34.01 3.61
4511 4622 7.587629 TGCTCTTGTATTCTTCAACATTCAAG 58.412 34.615 0.00 0.00 34.35 3.02
4512 4623 7.509141 TGCTCTTGTATTCTTCAACATTCAA 57.491 32.000 0.00 0.00 0.00 2.69
4513 4624 7.692460 ATGCTCTTGTATTCTTCAACATTCA 57.308 32.000 0.00 0.00 0.00 2.57
4514 4625 8.976986 AAATGCTCTTGTATTCTTCAACATTC 57.023 30.769 0.00 0.00 0.00 2.67
4516 4627 8.186821 GCTAAATGCTCTTGTATTCTTCAACAT 58.813 33.333 0.00 0.00 38.95 2.71
4517 4628 7.174772 TGCTAAATGCTCTTGTATTCTTCAACA 59.825 33.333 0.00 0.00 43.37 3.33
4518 4629 7.530010 TGCTAAATGCTCTTGTATTCTTCAAC 58.470 34.615 0.00 0.00 43.37 3.18
4519 4630 7.686438 TGCTAAATGCTCTTGTATTCTTCAA 57.314 32.000 0.00 0.00 43.37 2.69
4520 4631 7.553760 TGATGCTAAATGCTCTTGTATTCTTCA 59.446 33.333 0.00 0.00 43.37 3.02
4521 4632 7.923888 TGATGCTAAATGCTCTTGTATTCTTC 58.076 34.615 0.00 0.00 43.37 2.87
4522 4633 7.468357 GCTGATGCTAAATGCTCTTGTATTCTT 60.468 37.037 0.00 0.00 43.37 2.52
4523 4634 6.017275 GCTGATGCTAAATGCTCTTGTATTCT 60.017 38.462 0.00 0.00 43.37 2.40
4524 4635 6.141462 GCTGATGCTAAATGCTCTTGTATTC 58.859 40.000 0.00 0.00 43.37 1.75
4525 4636 5.591472 TGCTGATGCTAAATGCTCTTGTATT 59.409 36.000 0.00 0.00 43.37 1.89
4526 4637 5.128205 TGCTGATGCTAAATGCTCTTGTAT 58.872 37.500 0.00 0.00 43.37 2.29
4527 4638 4.516323 TGCTGATGCTAAATGCTCTTGTA 58.484 39.130 0.00 0.00 43.37 2.41
4528 4639 3.349927 TGCTGATGCTAAATGCTCTTGT 58.650 40.909 0.00 0.00 43.37 3.16
4529 4640 4.365899 TTGCTGATGCTAAATGCTCTTG 57.634 40.909 0.00 0.00 43.37 3.02
4530 4641 5.348986 CAATTGCTGATGCTAAATGCTCTT 58.651 37.500 0.00 0.00 43.37 2.85
4531 4642 4.736759 GCAATTGCTGATGCTAAATGCTCT 60.737 41.667 23.21 0.00 39.46 4.09
4532 4643 3.489785 GCAATTGCTGATGCTAAATGCTC 59.510 43.478 23.21 0.00 39.46 4.26
4533 4644 3.454375 GCAATTGCTGATGCTAAATGCT 58.546 40.909 23.21 0.00 39.46 3.79
4534 4645 3.854286 GCAATTGCTGATGCTAAATGC 57.146 42.857 23.21 0.00 39.46 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.