Multiple sequence alignment - TraesCS7B01G374000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G374000 chr7B 100.000 3026 0 0 1 3026 639391883 639394908 0.000000e+00 5589.0
1 TraesCS7B01G374000 chr7B 80.914 744 126 10 1166 1907 639278120 639278849 9.410000e-160 573.0
2 TraesCS7B01G374000 chr7B 72.210 457 104 17 1454 1894 639676759 639677208 5.300000e-23 119.0
3 TraesCS7B01G374000 chr7B 77.720 193 33 7 252 436 219587203 219587013 3.190000e-20 110.0
4 TraesCS7B01G374000 chr7D 91.683 1539 64 13 632 2154 576704758 576703268 0.000000e+00 2074.0
5 TraesCS7B01G374000 chr7D 93.537 882 41 9 2157 3026 576697325 576696448 0.000000e+00 1299.0
6 TraesCS7B01G374000 chr7D 80.979 878 140 15 1172 2038 576656421 576657282 0.000000e+00 671.0
7 TraesCS7B01G374000 chr7D 83.548 699 108 7 1348 2044 576694573 576695266 0.000000e+00 647.0
8 TraesCS7B01G374000 chr7D 80.220 455 66 19 2 439 50089560 50090007 1.350000e-83 320.0
9 TraesCS7B01G374000 chr7D 76.832 505 105 7 1454 1955 576755461 576755956 1.070000e-69 274.0
10 TraesCS7B01G374000 chr7D 90.094 212 11 2 632 843 576701723 576701522 1.790000e-67 267.0
11 TraesCS7B01G374000 chr7D 78.133 407 57 19 2574 2955 576813762 576813363 2.350000e-56 230.0
12 TraesCS7B01G374000 chr7D 95.588 136 4 2 482 616 576701840 576701706 1.830000e-52 217.0
13 TraesCS7B01G374000 chr7D 95.588 136 4 2 482 616 576704875 576704741 1.830000e-52 217.0
14 TraesCS7B01G374000 chr7D 86.829 205 13 6 503 707 576705297 576705107 1.830000e-52 217.0
15 TraesCS7B01G374000 chr7D 97.674 43 1 0 864 906 576701523 576701481 1.160000e-09 75.0
16 TraesCS7B01G374000 chr7A 81.549 878 148 9 1172 2048 668734076 668733212 0.000000e+00 712.0
17 TraesCS7B01G374000 chr7A 86.905 420 55 0 1629 2048 668059901 668060320 3.530000e-129 472.0
18 TraesCS7B01G374000 chr7A 76.543 648 133 10 1389 2027 669027365 669028002 1.340000e-88 337.0
19 TraesCS7B01G374000 chr7A 77.704 453 58 28 2 445 149145805 149145387 1.400000e-58 237.0
20 TraesCS7B01G374000 chr7A 77.477 444 66 18 2510 2941 668525598 668526019 5.040000e-58 235.0
21 TraesCS7B01G374000 chr7A 88.166 169 7 8 507 672 668754254 668754412 3.980000e-44 189.0
22 TraesCS7B01G374000 chr7A 78.322 286 57 5 1736 2019 668311280 668310998 2.400000e-41 180.0
23 TraesCS7B01G374000 chr7A 79.259 135 25 3 1565 1696 669639244 669639110 1.160000e-14 91.6
24 TraesCS7B01G374000 chr3A 82.819 454 67 8 1 445 676234925 676234474 2.190000e-106 396.0
25 TraesCS7B01G374000 chr4D 83.149 451 56 14 2 445 151932391 151932828 7.860000e-106 394.0
26 TraesCS7B01G374000 chr4D 84.861 251 26 8 1 247 78833002 78832760 3.010000e-60 243.0
27 TraesCS7B01G374000 chr1A 83.841 427 51 8 2 422 432225805 432225391 1.020000e-104 390.0
28 TraesCS7B01G374000 chr1A 85.166 391 41 7 2 387 432226439 432226061 4.730000e-103 385.0
29 TraesCS7B01G374000 chr2D 80.667 450 72 9 2 445 428573185 428572745 4.830000e-88 335.0
30 TraesCS7B01G374000 chr4B 79.864 442 62 14 3 441 471656891 471656474 6.340000e-77 298.0
31 TraesCS7B01G374000 chr5A 79.625 427 59 15 3 421 636975878 636976284 6.390000e-72 281.0
32 TraesCS7B01G374000 chr3B 78.271 428 65 19 4 421 711947539 711947948 1.800000e-62 250.0
33 TraesCS7B01G374000 chr5B 79.931 289 51 6 1 287 507002638 507002921 3.950000e-49 206.0
34 TraesCS7B01G374000 chr2A 89.130 46 5 0 2110 2155 764214990 764215035 1.170000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G374000 chr7B 639391883 639394908 3025 False 5589.000000 5589 100.000000 1 3026 1 chr7B.!!$F2 3025
1 TraesCS7B01G374000 chr7B 639278120 639278849 729 False 573.000000 573 80.914000 1166 1907 1 chr7B.!!$F1 741
2 TraesCS7B01G374000 chr7D 576696448 576697325 877 True 1299.000000 1299 93.537000 2157 3026 1 chr7D.!!$R1 869
3 TraesCS7B01G374000 chr7D 576656421 576657282 861 False 671.000000 671 80.979000 1172 2038 1 chr7D.!!$F2 866
4 TraesCS7B01G374000 chr7D 576694573 576695266 693 False 647.000000 647 83.548000 1348 2044 1 chr7D.!!$F3 696
5 TraesCS7B01G374000 chr7D 576701481 576705297 3816 True 511.166667 2074 92.909333 482 2154 6 chr7D.!!$R3 1672
6 TraesCS7B01G374000 chr7A 668733212 668734076 864 True 712.000000 712 81.549000 1172 2048 1 chr7A.!!$R3 876
7 TraesCS7B01G374000 chr7A 669027365 669028002 637 False 337.000000 337 76.543000 1389 2027 1 chr7A.!!$F4 638
8 TraesCS7B01G374000 chr1A 432225391 432226439 1048 True 387.500000 390 84.503500 2 422 2 chr1A.!!$R1 420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 1098 0.095417 GCGCTCAAGTTGGACGATTC 59.905 55.0 18.57 2.1 0.0 2.52 F
907 1541 0.102120 CTCTCAGCAGCCTAACTCGG 59.898 60.0 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1949 0.623723 TCCAGGGGGCACAATAGTTC 59.376 55.0 0.0 0.00 0.0 3.01 R
2762 4609 0.886563 AGGATTTGAAGCAGTGCAGC 59.113 50.0 19.2 9.12 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.189524 TCCACTCCAAATCCGACCGT 61.190 55.000 0.00 0.00 0.00 4.83
74 75 3.732892 CCGTCGGGTGCGCAAATT 61.733 61.111 14.00 0.00 0.00 1.82
80 81 1.510844 GGGTGCGCAAATTAGGTGG 59.489 57.895 14.00 0.00 0.00 4.61
85 86 2.494445 GCAAATTAGGTGGCCGCC 59.506 61.111 28.88 28.88 0.00 6.13
120 121 3.001406 CGTCGAGGGAAAGGGGGT 61.001 66.667 0.00 0.00 0.00 4.95
148 149 3.767230 CGCGTCCGAGTTGCACAG 61.767 66.667 0.00 0.00 36.29 3.66
149 150 4.077188 GCGTCCGAGTTGCACAGC 62.077 66.667 0.00 0.00 0.00 4.40
150 151 2.661537 CGTCCGAGTTGCACAGCA 60.662 61.111 0.00 0.00 36.47 4.41
166 167 4.170062 CAGCAATGGCAGCGACGG 62.170 66.667 0.00 0.00 44.61 4.79
258 886 0.779997 AAAAGGGAGGCCTGTGTCAT 59.220 50.000 12.00 0.00 0.00 3.06
262 890 1.596934 GGAGGCCTGTGTCATCGAA 59.403 57.895 12.00 0.00 0.00 3.71
270 898 3.000819 TGTCATCGAAGGGCGGGT 61.001 61.111 0.00 0.00 41.33 5.28
277 905 3.787001 GAAGGGCGGGTCAGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
328 957 3.424433 GCGTTATCCGTTTCACCTCAAAG 60.424 47.826 0.00 0.00 39.32 2.77
337 966 1.450312 CACCTCAAAGGCGGCCTAG 60.450 63.158 24.16 17.98 39.63 3.02
341 970 0.179097 CTCAAAGGCGGCCTAGACTC 60.179 60.000 24.16 0.00 31.13 3.36
342 971 1.153349 CAAAGGCGGCCTAGACTCC 60.153 63.158 24.16 0.00 31.13 3.85
346 975 3.145551 GCGGCCTAGACTCCGGAA 61.146 66.667 5.23 0.00 45.37 4.30
347 976 2.499827 GCGGCCTAGACTCCGGAAT 61.500 63.158 5.23 0.00 45.37 3.01
348 977 1.177256 GCGGCCTAGACTCCGGAATA 61.177 60.000 5.23 0.00 45.37 1.75
359 992 2.304761 ACTCCGGAATAGGTCAAAAGCA 59.695 45.455 5.23 0.00 0.00 3.91
364 997 3.372206 CGGAATAGGTCAAAAGCAGACAG 59.628 47.826 0.00 0.00 37.74 3.51
370 1003 3.065371 AGGTCAAAAGCAGACAGAAAACG 59.935 43.478 0.00 0.00 37.74 3.60
371 1004 3.064820 GGTCAAAAGCAGACAGAAAACGA 59.935 43.478 0.00 0.00 37.74 3.85
378 1011 4.662145 AGCAGACAGAAAACGAACAAAAG 58.338 39.130 0.00 0.00 0.00 2.27
382 1015 6.083630 CAGACAGAAAACGAACAAAAGTTCA 58.916 36.000 8.82 0.00 33.22 3.18
388 1021 6.367422 AGAAAACGAACAAAAGTTCATTTGCA 59.633 30.769 9.64 0.00 42.68 4.08
389 1022 5.448926 AACGAACAAAAGTTCATTTGCAC 57.551 34.783 8.82 0.00 42.68 4.57
396 1029 3.290608 TTCATTTGCACCCGCGCA 61.291 55.556 8.75 0.00 42.97 6.09
398 1032 2.125991 CATTTGCACCCGCGCATT 60.126 55.556 8.75 0.00 42.62 3.56
400 1034 3.646023 ATTTGCACCCGCGCATTGG 62.646 57.895 8.75 7.19 42.62 3.16
408 1042 2.125991 CGCGCATTGGCCATTTGT 60.126 55.556 6.09 0.00 36.38 2.83
414 1048 2.859538 CGCATTGGCCATTTGTTATGTC 59.140 45.455 6.09 1.95 36.38 3.06
415 1049 3.429272 CGCATTGGCCATTTGTTATGTCT 60.429 43.478 6.09 0.00 36.38 3.41
422 1056 4.152223 GGCCATTTGTTATGTCTGTTTTGC 59.848 41.667 0.00 0.00 0.00 3.68
423 1057 4.749099 GCCATTTGTTATGTCTGTTTTGCA 59.251 37.500 0.00 0.00 0.00 4.08
424 1058 5.333263 GCCATTTGTTATGTCTGTTTTGCAC 60.333 40.000 0.00 0.00 0.00 4.57
425 1059 5.177327 CCATTTGTTATGTCTGTTTTGCACC 59.823 40.000 0.00 0.00 0.00 5.01
426 1060 4.314740 TTGTTATGTCTGTTTTGCACCC 57.685 40.909 0.00 0.00 0.00 4.61
427 1061 3.291584 TGTTATGTCTGTTTTGCACCCA 58.708 40.909 0.00 0.00 0.00 4.51
428 1062 3.701542 TGTTATGTCTGTTTTGCACCCAA 59.298 39.130 0.00 0.00 0.00 4.12
429 1063 4.160439 TGTTATGTCTGTTTTGCACCCAAA 59.840 37.500 0.00 0.00 39.08 3.28
430 1064 2.663826 TGTCTGTTTTGCACCCAAAC 57.336 45.000 5.68 5.68 40.45 2.93
431 1065 1.135257 TGTCTGTTTTGCACCCAAACG 60.135 47.619 7.73 3.95 40.45 3.60
432 1066 0.457851 TCTGTTTTGCACCCAAACGG 59.542 50.000 13.03 13.03 40.45 4.44
433 1067 0.457851 CTGTTTTGCACCCAAACGGA 59.542 50.000 13.74 0.00 40.45 4.69
434 1068 0.173708 TGTTTTGCACCCAAACGGAC 59.826 50.000 7.73 0.00 40.45 4.79
435 1069 0.868177 GTTTTGCACCCAAACGGACG 60.868 55.000 0.00 0.00 40.45 4.79
436 1070 2.615262 TTTTGCACCCAAACGGACGC 62.615 55.000 0.00 0.00 40.45 5.19
437 1071 4.858680 TGCACCCAAACGGACGCA 62.859 61.111 0.00 0.00 40.00 5.24
438 1072 4.322385 GCACCCAAACGGACGCAC 62.322 66.667 0.00 0.00 34.77 5.34
439 1073 3.656045 CACCCAAACGGACGCACC 61.656 66.667 0.00 0.00 34.64 5.01
440 1074 4.941309 ACCCAAACGGACGCACCC 62.941 66.667 0.00 0.00 34.64 4.61
456 1090 3.777925 CCGGACGCGCTCAAGTTG 61.778 66.667 5.73 0.00 0.00 3.16
457 1091 3.777925 CGGACGCGCTCAAGTTGG 61.778 66.667 5.73 0.00 0.00 3.77
458 1092 2.357034 GGACGCGCTCAAGTTGGA 60.357 61.111 5.73 0.00 0.00 3.53
459 1093 2.668280 GGACGCGCTCAAGTTGGAC 61.668 63.158 5.73 0.00 0.00 4.02
460 1094 3.000080 GACGCGCTCAAGTTGGACG 62.000 63.158 5.73 12.33 0.00 4.79
461 1095 2.733218 CGCGCTCAAGTTGGACGA 60.733 61.111 18.57 0.00 0.00 4.20
462 1096 2.094659 CGCGCTCAAGTTGGACGAT 61.095 57.895 18.57 0.00 0.00 3.73
463 1097 1.626654 CGCGCTCAAGTTGGACGATT 61.627 55.000 18.57 0.00 0.00 3.34
464 1098 0.095417 GCGCTCAAGTTGGACGATTC 59.905 55.000 18.57 2.10 0.00 2.52
465 1099 0.721718 CGCTCAAGTTGGACGATTCC 59.278 55.000 11.52 0.00 43.19 3.01
466 1100 1.673033 CGCTCAAGTTGGACGATTCCT 60.673 52.381 11.52 0.00 43.31 3.36
467 1101 2.416836 CGCTCAAGTTGGACGATTCCTA 60.417 50.000 11.52 0.00 43.31 2.94
468 1102 3.596214 GCTCAAGTTGGACGATTCCTAA 58.404 45.455 2.34 0.00 43.31 2.69
469 1103 4.000988 GCTCAAGTTGGACGATTCCTAAA 58.999 43.478 2.34 0.00 43.31 1.85
470 1104 4.454504 GCTCAAGTTGGACGATTCCTAAAA 59.545 41.667 2.34 0.00 43.31 1.52
471 1105 5.048991 GCTCAAGTTGGACGATTCCTAAAAA 60.049 40.000 2.34 0.00 43.31 1.94
503 1137 1.162698 TGTCTGTCGTACGGAGAAGG 58.837 55.000 16.52 0.75 33.48 3.46
603 1237 3.077556 CGGCAGCCCACTACCTCT 61.078 66.667 5.63 0.00 0.00 3.69
604 1238 2.904131 GGCAGCCCACTACCTCTC 59.096 66.667 0.00 0.00 0.00 3.20
605 1239 2.736826 GGCAGCCCACTACCTCTCC 61.737 68.421 0.00 0.00 0.00 3.71
606 1240 2.736826 GCAGCCCACTACCTCTCCC 61.737 68.421 0.00 0.00 0.00 4.30
607 1241 2.066999 CAGCCCACTACCTCTCCCC 61.067 68.421 0.00 0.00 0.00 4.81
608 1242 2.257461 AGCCCACTACCTCTCCCCT 61.257 63.158 0.00 0.00 0.00 4.79
609 1243 1.762858 GCCCACTACCTCTCCCCTC 60.763 68.421 0.00 0.00 0.00 4.30
610 1244 2.020137 CCCACTACCTCTCCCCTCT 58.980 63.158 0.00 0.00 0.00 3.69
611 1245 0.105913 CCCACTACCTCTCCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
612 1246 0.930726 CCACTACCTCTCCCCTCTCT 59.069 60.000 0.00 0.00 0.00 3.10
613 1247 1.289530 CCACTACCTCTCCCCTCTCTT 59.710 57.143 0.00 0.00 0.00 2.85
614 1248 2.292587 CCACTACCTCTCCCCTCTCTTT 60.293 54.545 0.00 0.00 0.00 2.52
615 1249 2.763448 CACTACCTCTCCCCTCTCTTTG 59.237 54.545 0.00 0.00 0.00 2.77
616 1250 2.292587 ACTACCTCTCCCCTCTCTTTGG 60.293 54.545 0.00 0.00 0.00 3.28
617 1251 0.912006 ACCTCTCCCCTCTCTTTGGC 60.912 60.000 0.00 0.00 0.00 4.52
618 1252 1.631071 CCTCTCCCCTCTCTTTGGCC 61.631 65.000 0.00 0.00 0.00 5.36
619 1253 1.965754 CTCTCCCCTCTCTTTGGCCG 61.966 65.000 0.00 0.00 0.00 6.13
620 1254 3.689002 CTCCCCTCTCTTTGGCCGC 62.689 68.421 0.00 0.00 0.00 6.53
622 1256 4.394712 CCCTCTCTTTGGCCGCGT 62.395 66.667 4.92 0.00 0.00 6.01
623 1257 2.815647 CCTCTCTTTGGCCGCGTC 60.816 66.667 4.92 0.00 0.00 5.19
624 1258 3.181967 CTCTCTTTGGCCGCGTCG 61.182 66.667 4.92 0.00 0.00 5.12
646 1280 1.687996 CCTCCACCTCTTCTCCCTCTC 60.688 61.905 0.00 0.00 0.00 3.20
691 1325 1.081277 GGTCCAGTCCCTCTCCCTT 59.919 63.158 0.00 0.00 0.00 3.95
712 1346 2.268920 GCCGCTTCCACTGGATCA 59.731 61.111 0.00 0.00 0.00 2.92
772 1406 0.966920 GCCCGGATCGATCCTCTTAA 59.033 55.000 35.31 0.00 44.93 1.85
775 1409 1.961394 CCGGATCGATCCTCTTAACCA 59.039 52.381 35.31 0.00 44.93 3.67
802 1436 1.957765 GAGACCAACCTACCGGCCTC 61.958 65.000 0.00 0.00 0.00 4.70
803 1437 3.366739 GACCAACCTACCGGCCTCG 62.367 68.421 0.00 0.00 0.00 4.63
804 1438 4.832608 CCAACCTACCGGCCTCGC 62.833 72.222 0.00 0.00 34.56 5.03
809 1443 4.253257 CTACCGGCCTCGCGACTC 62.253 72.222 3.71 0.00 34.56 3.36
852 1486 2.336809 CGGAGCGGAGGCATCTAC 59.663 66.667 0.00 0.00 43.41 2.59
853 1487 2.196925 CGGAGCGGAGGCATCTACT 61.197 63.158 0.00 0.00 43.41 2.57
854 1488 1.663173 GGAGCGGAGGCATCTACTC 59.337 63.158 11.20 11.20 43.41 2.59
861 1495 2.423446 GGCATCTACTCCCTGCCG 59.577 66.667 0.00 0.00 45.35 5.69
862 1496 2.435693 GGCATCTACTCCCTGCCGT 61.436 63.158 0.00 0.00 45.35 5.68
863 1497 1.227380 GCATCTACTCCCTGCCGTG 60.227 63.158 0.00 0.00 0.00 4.94
864 1498 1.443407 CATCTACTCCCTGCCGTGG 59.557 63.158 0.00 0.00 0.00 4.94
868 1502 2.227089 CTACTCCCTGCCGTGGTGAC 62.227 65.000 0.00 0.00 0.00 3.67
872 1506 3.991051 CCTGCCGTGGTGACTCGT 61.991 66.667 0.00 0.00 45.32 4.18
906 1540 0.527385 GCTCTCAGCAGCCTAACTCG 60.527 60.000 0.00 0.00 41.89 4.18
907 1541 0.102120 CTCTCAGCAGCCTAACTCGG 59.898 60.000 0.00 0.00 0.00 4.63
993 1627 2.109126 GCGACCAAGATCTGTGGCC 61.109 63.158 18.38 0.00 40.02 5.36
1033 1679 4.719369 AAGTCGTCCGCTCGGTGC 62.719 66.667 8.28 2.38 36.47 5.01
1056 1702 2.903798 CTGCTCAGGATTCAGGAGTTC 58.096 52.381 5.92 0.00 0.00 3.01
1064 1710 2.102252 GGATTCAGGAGTTCAGCTCGAT 59.898 50.000 0.00 0.00 45.03 3.59
1065 1711 2.662006 TTCAGGAGTTCAGCTCGATG 57.338 50.000 0.00 0.00 45.03 3.84
1104 1750 2.214376 TCGAAGCCAAATGGGATGTT 57.786 45.000 0.90 0.00 40.01 2.71
1113 1759 3.384467 CCAAATGGGATGTTGATGGGTAC 59.616 47.826 0.00 0.00 40.01 3.34
1129 1775 2.934553 GGGTACGAGTGGCAAGTAAATC 59.065 50.000 0.00 0.00 0.00 2.17
1236 1882 1.043116 CCTGTCGCCTGGTAGATCCA 61.043 60.000 0.00 0.00 45.01 3.41
1266 1912 1.407656 TTGAACCAGCTCACGAGGGT 61.408 55.000 0.00 0.00 34.43 4.34
1303 1949 4.502259 CCTTCTATCATCCCCAAGAGTTCG 60.502 50.000 0.00 0.00 0.00 3.95
1309 1955 4.030913 TCATCCCCAAGAGTTCGAACTAT 58.969 43.478 29.79 24.61 39.88 2.12
1318 1964 1.092348 GTTCGAACTATTGTGCCCCC 58.908 55.000 20.97 0.00 0.00 5.40
1383 2029 4.238514 AGAACGATACTTTGACTCTGTGC 58.761 43.478 0.00 0.00 0.00 4.57
1409 2061 4.832248 TCCATCACAGTGTACAAGGAATC 58.168 43.478 0.00 0.00 0.00 2.52
1412 2064 4.002906 TCACAGTGTACAAGGAATCACC 57.997 45.455 0.00 0.00 39.35 4.02
1413 2065 3.389656 TCACAGTGTACAAGGAATCACCA 59.610 43.478 0.00 0.00 42.04 4.17
1414 2066 3.748048 CACAGTGTACAAGGAATCACCAG 59.252 47.826 0.00 0.00 42.04 4.00
1491 2149 0.975040 AGCATCTCGGTGAGCTCCTT 60.975 55.000 12.15 0.00 30.05 3.36
1531 2189 2.031258 TGTCAACTTTCTTGTCGGCA 57.969 45.000 0.00 0.00 0.00 5.69
1533 2191 2.750166 TGTCAACTTTCTTGTCGGCAAA 59.250 40.909 3.10 0.00 33.73 3.68
1587 2245 1.944430 GCGAGGTCTCCGGTTTTCAAT 60.944 52.381 0.00 0.00 0.00 2.57
1608 2268 1.339151 GCCCAGTTCTTCGGAGACATT 60.339 52.381 0.00 0.00 34.32 2.71
1611 2271 4.575885 CCCAGTTCTTCGGAGACATTAAA 58.424 43.478 0.00 0.00 34.32 1.52
1614 2274 5.348997 CCAGTTCTTCGGAGACATTAAAGAC 59.651 44.000 0.00 0.00 34.32 3.01
2027 2695 3.807622 GTCCATGTGACGAAGAGTTGAAA 59.192 43.478 0.00 0.00 33.49 2.69
2056 2724 4.023707 CCATAGTGCTAAACTGCTAATGGC 60.024 45.833 0.00 0.00 40.26 4.40
2061 2729 3.193267 TGCTAAACTGCTAATGGCCAAAG 59.807 43.478 10.96 12.24 40.92 2.77
2068 2736 4.713321 ACTGCTAATGGCCAAAGATTTCAT 59.287 37.500 19.85 0.00 40.92 2.57
2072 2740 3.788333 ATGGCCAAAGATTTCATGACG 57.212 42.857 10.96 0.00 0.00 4.35
2117 2785 5.591067 GCATCCTTGTGTAGTCTAGTACTCT 59.409 44.000 0.00 0.00 39.80 3.24
2129 2797 5.424895 AGTCTAGTACTCTCTCCGTCCTAAA 59.575 44.000 0.00 0.00 30.33 1.85
2134 2802 7.951347 AGTACTCTCTCCGTCCTAAAATAAA 57.049 36.000 0.00 0.00 0.00 1.40
2139 2807 7.093465 ACTCTCTCCGTCCTAAAATAAATGTCA 60.093 37.037 0.00 0.00 0.00 3.58
2140 2808 7.039882 TCTCTCCGTCCTAAAATAAATGTCAC 58.960 38.462 0.00 0.00 0.00 3.67
2174 2842 3.184382 TGTTGTGATGGAGGGAGTAGA 57.816 47.619 0.00 0.00 0.00 2.59
2188 2856 6.406065 GGAGGGAGTAGAAACTTATGTCTGTC 60.406 46.154 0.00 0.00 35.56 3.51
2237 3320 8.941977 TGTCCATCTATATGTGTTTTGTGTTAC 58.058 33.333 0.00 0.00 0.00 2.50
2242 3325 6.937465 TCTATATGTGTTTTGTGTTACCAGCA 59.063 34.615 0.00 0.00 0.00 4.41
2433 3844 3.625764 TGTGTTCTGTTTGCTGGTACTTC 59.374 43.478 0.00 0.00 0.00 3.01
2444 3855 4.523083 TGCTGGTACTTCTTTTGAACACT 58.477 39.130 0.00 0.00 34.31 3.55
2467 3878 9.941991 CACTTTAATTCTCACATTAAATTTGCG 57.058 29.630 0.00 0.00 37.76 4.85
2498 3909 7.560991 ACATTAGGAAAATGCCATCTGATTGTA 59.439 33.333 0.00 0.00 0.00 2.41
2558 3972 4.819105 TCATACCTGAACCAACCTAGTG 57.181 45.455 0.00 0.00 0.00 2.74
2601 4015 0.745845 CCTTTCCACAGCATCCTCCG 60.746 60.000 0.00 0.00 0.00 4.63
2615 4029 4.564406 GCATCCTCCGATGTCCTTATGATT 60.564 45.833 2.35 0.00 46.56 2.57
2671 4085 8.991243 AAGTGGTTTGAATATTCAATGATGTG 57.009 30.769 27.11 0.00 45.65 3.21
2716 4291 5.157781 TCAAAACGTTTGTGTCTCTTTTGG 58.842 37.500 15.46 0.00 32.11 3.28
2762 4609 1.831389 CGTGACAACCCTTGACTGCG 61.831 60.000 0.00 0.00 0.00 5.18
2791 4638 7.576477 GCACTGCTTCAAATCCTAAAATCTTCT 60.576 37.037 0.00 0.00 0.00 2.85
2856 4704 8.601476 GTTATTTTACATGTTCCTCTCGGTTAG 58.399 37.037 2.30 0.00 0.00 2.34
2857 4705 4.730949 TTACATGTTCCTCTCGGTTAGG 57.269 45.455 2.30 0.00 35.26 2.69
2858 4706 2.816411 ACATGTTCCTCTCGGTTAGGA 58.184 47.619 0.00 0.00 41.47 2.94
2860 4708 3.775316 ACATGTTCCTCTCGGTTAGGATT 59.225 43.478 0.00 0.00 42.69 3.01
2861 4709 4.225267 ACATGTTCCTCTCGGTTAGGATTT 59.775 41.667 0.00 0.00 42.69 2.17
2862 4710 4.467198 TGTTCCTCTCGGTTAGGATTTC 57.533 45.455 2.74 0.00 42.69 2.17
2863 4711 3.119245 TGTTCCTCTCGGTTAGGATTTCG 60.119 47.826 2.74 0.00 42.69 3.46
2877 4731 7.169476 GGTTAGGATTTCGCTCTAATAGTTCAC 59.831 40.741 0.00 0.00 0.00 3.18
2891 4745 9.863845 TCTAATAGTTCACGTTTGATGACAATA 57.136 29.630 0.00 0.00 35.85 1.90
2899 4753 7.742151 TCACGTTTGATGACAATATTCTTCAG 58.258 34.615 0.00 0.00 35.85 3.02
2924 4778 2.362736 TCTTCTCTGGCATGCATCAAC 58.637 47.619 21.36 1.47 0.00 3.18
2941 4795 8.018537 TGCATCAACTTGTACCAGTACTATAT 57.981 34.615 9.24 0.00 37.00 0.86
2942 4796 9.138596 TGCATCAACTTGTACCAGTACTATATA 57.861 33.333 9.24 0.00 37.00 0.86
2943 4797 9.976511 GCATCAACTTGTACCAGTACTATATAA 57.023 33.333 9.24 0.00 37.00 0.98
2991 4845 1.090625 GCACATGCTCTCAGCTCAGG 61.091 60.000 0.00 0.00 42.97 3.86
3009 4863 5.968261 GCTCAGGCGAATATTTTTCTTTCTC 59.032 40.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.003112 ACCTAATTTGCGCACCCGA 60.003 52.632 11.12 0.00 36.29 5.14
85 86 4.157120 CCCCCGAGCTACCCAACG 62.157 72.222 0.00 0.00 0.00 4.10
112 113 4.678743 GCTCGCCCAACCCCCTTT 62.679 66.667 0.00 0.00 0.00 3.11
149 150 4.170062 CCGTCGCTGCCATTGCTG 62.170 66.667 0.00 0.00 38.71 4.41
171 172 1.003233 GCCACTCTTGTCCCTCACC 60.003 63.158 0.00 0.00 0.00 4.02
172 173 1.374758 CGCCACTCTTGTCCCTCAC 60.375 63.158 0.00 0.00 0.00 3.51
173 174 2.583441 CCGCCACTCTTGTCCCTCA 61.583 63.158 0.00 0.00 0.00 3.86
174 175 2.266055 CCGCCACTCTTGTCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
175 176 3.322466 CCCGCCACTCTTGTCCCT 61.322 66.667 0.00 0.00 0.00 4.20
176 177 4.410400 CCCCGCCACTCTTGTCCC 62.410 72.222 0.00 0.00 0.00 4.46
178 179 3.637273 ACCCCCGCCACTCTTGTC 61.637 66.667 0.00 0.00 0.00 3.18
179 180 3.953775 CACCCCCGCCACTCTTGT 61.954 66.667 0.00 0.00 0.00 3.16
242 870 2.362369 CGATGACACAGGCCTCCCT 61.362 63.158 0.00 0.00 44.25 4.20
250 878 1.811266 CCGCCCTTCGATGACACAG 60.811 63.158 0.00 0.00 41.67 3.66
255 883 2.682136 TGACCCGCCCTTCGATGA 60.682 61.111 0.00 0.00 41.67 2.92
270 898 2.922503 TGCGCTTGTCCTCCCTGA 60.923 61.111 9.73 0.00 0.00 3.86
294 923 3.652539 ATAACGCACGGACGGGTGG 62.653 63.158 12.42 0.00 38.36 4.61
309 938 3.078837 GCCTTTGAGGTGAAACGGATAA 58.921 45.455 0.00 0.00 37.80 1.75
337 966 2.937149 GCTTTTGACCTATTCCGGAGTC 59.063 50.000 13.26 13.26 0.00 3.36
341 970 2.678336 GTCTGCTTTTGACCTATTCCGG 59.322 50.000 0.00 0.00 0.00 5.14
342 971 3.334691 TGTCTGCTTTTGACCTATTCCG 58.665 45.455 0.00 0.00 33.83 4.30
345 974 6.513393 CGTTTTCTGTCTGCTTTTGACCTATT 60.513 38.462 0.00 0.00 33.83 1.73
346 975 5.049405 CGTTTTCTGTCTGCTTTTGACCTAT 60.049 40.000 0.00 0.00 33.83 2.57
347 976 4.272504 CGTTTTCTGTCTGCTTTTGACCTA 59.727 41.667 0.00 0.00 33.83 3.08
348 977 3.065371 CGTTTTCTGTCTGCTTTTGACCT 59.935 43.478 0.00 0.00 33.83 3.85
371 1004 3.194062 CGGGTGCAAATGAACTTTTGTT 58.806 40.909 12.36 0.00 46.75 2.83
378 1011 2.804931 GCGCGGGTGCAAATGAAC 60.805 61.111 8.83 0.00 42.97 3.18
389 1022 4.146075 AAATGGCCAATGCGCGGG 62.146 61.111 10.96 5.44 38.85 6.13
396 1029 5.743636 AACAGACATAACAAATGGCCAAT 57.256 34.783 10.96 0.00 0.00 3.16
398 1032 5.295950 CAAAACAGACATAACAAATGGCCA 58.704 37.500 8.56 8.56 0.00 5.36
400 1034 4.749099 TGCAAAACAGACATAACAAATGGC 59.251 37.500 0.00 0.00 0.00 4.40
403 1037 5.163364 TGGGTGCAAAACAGACATAACAAAT 60.163 36.000 0.00 0.00 0.00 2.32
405 1039 3.701542 TGGGTGCAAAACAGACATAACAA 59.298 39.130 0.00 0.00 0.00 2.83
408 1042 4.688021 GTTTGGGTGCAAAACAGACATAA 58.312 39.130 7.46 0.00 37.45 1.90
414 1048 0.457851 TCCGTTTGGGTGCAAAACAG 59.542 50.000 11.84 2.19 37.37 3.16
415 1049 0.173708 GTCCGTTTGGGTGCAAAACA 59.826 50.000 11.84 0.00 37.37 2.83
422 1056 3.656045 GGTGCGTCCGTTTGGGTG 61.656 66.667 0.00 0.00 37.00 4.61
423 1057 4.941309 GGGTGCGTCCGTTTGGGT 62.941 66.667 0.00 0.00 37.00 4.51
439 1073 3.777925 CAACTTGAGCGCGTCCGG 61.778 66.667 8.43 0.00 34.32 5.14
440 1074 3.777925 CCAACTTGAGCGCGTCCG 61.778 66.667 8.43 1.22 37.57 4.79
441 1075 2.357034 TCCAACTTGAGCGCGTCC 60.357 61.111 8.43 0.00 0.00 4.79
442 1076 2.853914 GTCCAACTTGAGCGCGTC 59.146 61.111 8.43 4.75 0.00 5.19
443 1077 2.765250 ATCGTCCAACTTGAGCGCGT 62.765 55.000 8.43 0.00 0.00 6.01
444 1078 1.626654 AATCGTCCAACTTGAGCGCG 61.627 55.000 0.00 0.00 0.00 6.86
445 1079 0.095417 GAATCGTCCAACTTGAGCGC 59.905 55.000 0.00 0.00 0.00 5.92
446 1080 0.721718 GGAATCGTCCAACTTGAGCG 59.278 55.000 0.00 0.00 44.26 5.03
470 1104 7.217447 CGTACGACAGACAATGTTTTTCTTTTT 59.783 33.333 10.44 0.00 44.17 1.94
471 1105 6.685403 CGTACGACAGACAATGTTTTTCTTTT 59.315 34.615 10.44 0.00 44.17 2.27
472 1106 6.189567 CGTACGACAGACAATGTTTTTCTTT 58.810 36.000 10.44 0.00 44.17 2.52
473 1107 5.277154 CCGTACGACAGACAATGTTTTTCTT 60.277 40.000 18.76 0.00 44.17 2.52
474 1108 4.210537 CCGTACGACAGACAATGTTTTTCT 59.789 41.667 18.76 0.00 44.17 2.52
475 1109 4.209703 TCCGTACGACAGACAATGTTTTTC 59.790 41.667 18.76 0.00 44.17 2.29
476 1110 4.121317 TCCGTACGACAGACAATGTTTTT 58.879 39.130 18.76 0.00 44.17 1.94
477 1111 3.719924 TCCGTACGACAGACAATGTTTT 58.280 40.909 18.76 0.00 44.17 2.43
478 1112 3.005050 TCTCCGTACGACAGACAATGTTT 59.995 43.478 18.76 0.00 44.17 2.83
479 1113 2.555325 TCTCCGTACGACAGACAATGTT 59.445 45.455 18.76 0.00 44.17 2.71
481 1115 2.913777 TCTCCGTACGACAGACAATG 57.086 50.000 18.76 0.00 0.00 2.82
482 1116 2.163815 CCTTCTCCGTACGACAGACAAT 59.836 50.000 18.76 0.00 0.00 2.71
483 1117 1.538512 CCTTCTCCGTACGACAGACAA 59.461 52.381 18.76 2.94 0.00 3.18
484 1118 1.162698 CCTTCTCCGTACGACAGACA 58.837 55.000 18.76 7.62 0.00 3.41
485 1119 1.163554 ACCTTCTCCGTACGACAGAC 58.836 55.000 18.76 0.00 0.00 3.51
486 1120 1.808945 GAACCTTCTCCGTACGACAGA 59.191 52.381 18.76 14.46 0.00 3.41
487 1121 1.135460 GGAACCTTCTCCGTACGACAG 60.135 57.143 18.76 12.21 0.00 3.51
488 1122 0.883833 GGAACCTTCTCCGTACGACA 59.116 55.000 18.76 1.31 0.00 4.35
489 1123 3.710106 GGAACCTTCTCCGTACGAC 57.290 57.895 18.76 0.00 0.00 4.34
503 1137 4.965119 ATTGATTTACTCAAGCGGGAAC 57.035 40.909 0.00 0.00 46.71 3.62
603 1237 3.717294 GCGGCCAAAGAGAGGGGA 61.717 66.667 2.24 0.00 0.00 4.81
605 1239 4.394712 ACGCGGCCAAAGAGAGGG 62.395 66.667 12.47 0.00 0.00 4.30
606 1240 2.815647 GACGCGGCCAAAGAGAGG 60.816 66.667 12.47 0.00 0.00 3.69
607 1241 3.181967 CGACGCGGCCAAAGAGAG 61.182 66.667 12.47 0.00 0.00 3.20
608 1242 4.735132 CCGACGCGGCCAAAGAGA 62.735 66.667 12.47 0.00 41.17 3.10
620 1254 3.358076 GAAGAGGTGGAGGCCGACG 62.358 68.421 0.00 0.00 0.00 5.12
621 1255 1.950973 GAGAAGAGGTGGAGGCCGAC 61.951 65.000 0.00 0.00 0.00 4.79
622 1256 1.682684 GAGAAGAGGTGGAGGCCGA 60.683 63.158 0.00 0.00 0.00 5.54
623 1257 2.726351 GGAGAAGAGGTGGAGGCCG 61.726 68.421 0.00 0.00 0.00 6.13
624 1258 2.371259 GGGAGAAGAGGTGGAGGCC 61.371 68.421 0.00 0.00 0.00 5.19
625 1259 1.306568 AGGGAGAAGAGGTGGAGGC 60.307 63.158 0.00 0.00 0.00 4.70
626 1260 0.338120 AGAGGGAGAAGAGGTGGAGG 59.662 60.000 0.00 0.00 0.00 4.30
627 1261 1.287739 AGAGAGGGAGAAGAGGTGGAG 59.712 57.143 0.00 0.00 0.00 3.86
628 1262 1.006519 CAGAGAGGGAGAAGAGGTGGA 59.993 57.143 0.00 0.00 0.00 4.02
629 1263 1.006519 TCAGAGAGGGAGAAGAGGTGG 59.993 57.143 0.00 0.00 0.00 4.61
630 1264 2.099405 GTCAGAGAGGGAGAAGAGGTG 58.901 57.143 0.00 0.00 0.00 4.00
631 1265 2.000048 AGTCAGAGAGGGAGAAGAGGT 59.000 52.381 0.00 0.00 0.00 3.85
632 1266 2.242196 AGAGTCAGAGAGGGAGAAGAGG 59.758 54.545 0.00 0.00 0.00 3.69
633 1267 3.652057 AGAGTCAGAGAGGGAGAAGAG 57.348 52.381 0.00 0.00 0.00 2.85
634 1268 4.085733 CAAAGAGTCAGAGAGGGAGAAGA 58.914 47.826 0.00 0.00 0.00 2.87
635 1269 3.368323 GCAAAGAGTCAGAGAGGGAGAAG 60.368 52.174 0.00 0.00 0.00 2.85
636 1270 2.564947 GCAAAGAGTCAGAGAGGGAGAA 59.435 50.000 0.00 0.00 0.00 2.87
646 1280 3.793144 GCCGCCGCAAAGAGTCAG 61.793 66.667 0.00 0.00 34.03 3.51
775 1409 4.324991 GGTTGGTCTCCCGGCGTT 62.325 66.667 6.01 0.00 0.00 4.84
805 1439 3.011760 CTTTTGGTCGCGGCGAGTC 62.012 63.158 27.15 20.40 36.23 3.36
806 1440 3.041940 CTTTTGGTCGCGGCGAGT 61.042 61.111 27.15 0.00 36.23 4.18
807 1441 4.445545 GCTTTTGGTCGCGGCGAG 62.446 66.667 27.15 13.92 36.23 5.03
810 1444 3.267597 ATGTGCTTTTGGTCGCGGC 62.268 57.895 6.13 3.04 0.00 6.53
811 1445 1.154225 GATGTGCTTTTGGTCGCGG 60.154 57.895 6.13 0.00 0.00 6.46
816 1450 1.244019 GCCCTCGATGTGCTTTTGGT 61.244 55.000 0.00 0.00 0.00 3.67
845 1479 1.227380 CACGGCAGGGAGTAGATGC 60.227 63.158 0.00 0.00 39.25 3.91
846 1480 1.330655 ACCACGGCAGGGAGTAGATG 61.331 60.000 0.00 0.00 0.00 2.90
847 1481 1.001760 ACCACGGCAGGGAGTAGAT 59.998 57.895 0.00 0.00 0.00 1.98
848 1482 1.982395 CACCACGGCAGGGAGTAGA 60.982 63.158 0.00 0.00 0.00 2.59
849 1483 1.982395 TCACCACGGCAGGGAGTAG 60.982 63.158 0.00 0.00 0.00 2.57
850 1484 2.118732 TCACCACGGCAGGGAGTA 59.881 61.111 0.00 0.00 0.00 2.59
851 1485 3.626924 GTCACCACGGCAGGGAGT 61.627 66.667 0.00 0.00 0.00 3.85
852 1486 3.302347 GAGTCACCACGGCAGGGAG 62.302 68.421 0.00 0.00 0.00 4.30
853 1487 3.311110 GAGTCACCACGGCAGGGA 61.311 66.667 0.00 0.00 0.00 4.20
854 1488 4.742201 CGAGTCACCACGGCAGGG 62.742 72.222 0.00 0.00 0.00 4.45
855 1489 3.916392 GACGAGTCACCACGGCAGG 62.916 68.421 0.00 0.00 37.49 4.85
856 1490 2.430921 GACGAGTCACCACGGCAG 60.431 66.667 0.00 0.00 37.49 4.85
857 1491 3.986006 GGACGAGTCACCACGGCA 61.986 66.667 5.55 0.00 39.47 5.69
859 1493 3.606065 GACGGACGAGTCACCACGG 62.606 68.421 5.55 0.00 40.65 4.94
860 1494 2.126965 GACGGACGAGTCACCACG 60.127 66.667 5.55 2.27 40.65 4.94
861 1495 2.126965 CGACGGACGAGTCACCAC 60.127 66.667 5.55 0.00 45.77 4.16
862 1496 4.034258 GCGACGGACGAGTCACCA 62.034 66.667 3.67 0.00 45.77 4.17
863 1497 4.773117 GGCGACGGACGAGTCACC 62.773 72.222 3.67 0.00 45.77 4.02
864 1498 3.735029 AGGCGACGGACGAGTCAC 61.735 66.667 3.67 0.00 45.77 3.67
868 1502 4.838486 GAGCAGGCGACGGACGAG 62.838 72.222 3.67 0.00 45.77 4.18
936 1570 4.636206 GTGGAAAAGGCTGGATTAGTACAG 59.364 45.833 0.00 0.00 39.47 2.74
950 1584 2.817258 TGGAGTTTATGCGTGGAAAAGG 59.183 45.455 0.00 0.00 0.00 3.11
993 1627 1.227380 GAGGTCTGCCATGGCGTAG 60.227 63.158 30.87 23.24 45.51 3.51
1002 1636 0.951040 CGACTTGGTTGAGGTCTGCC 60.951 60.000 0.00 0.00 0.00 4.85
1033 1679 1.523258 CCTGAATCCTGAGCAGCCG 60.523 63.158 0.00 0.00 0.00 5.52
1056 1702 4.598894 CCGCCCCTCATCGAGCTG 62.599 72.222 0.00 0.00 0.00 4.24
1087 1733 3.431207 CCATCAACATCCCATTTGGCTTC 60.431 47.826 0.00 0.00 0.00 3.86
1104 1750 0.249120 CTTGCCACTCGTACCCATCA 59.751 55.000 0.00 0.00 0.00 3.07
1113 1759 5.551760 AAATGAGATTTACTTGCCACTCG 57.448 39.130 0.00 0.00 0.00 4.18
1129 1775 2.554032 ACGGTCTCCTTGCAAAAATGAG 59.446 45.455 0.00 4.72 0.00 2.90
1260 1906 0.317160 TTGCTGACACACTACCCTCG 59.683 55.000 0.00 0.00 0.00 4.63
1266 1912 4.526650 TGATAGAAGGTTGCTGACACACTA 59.473 41.667 0.00 0.00 0.00 2.74
1303 1949 0.623723 TCCAGGGGGCACAATAGTTC 59.376 55.000 0.00 0.00 0.00 3.01
1309 1955 0.920763 ATGAGATCCAGGGGGCACAA 60.921 55.000 0.00 0.00 0.00 3.33
1311 1957 0.689623 CTATGAGATCCAGGGGGCAC 59.310 60.000 0.00 0.00 0.00 5.01
1409 2061 1.870055 GATGGTTGGTGCTGCTGGTG 61.870 60.000 0.00 0.00 0.00 4.17
1412 2064 2.345760 GGGATGGTTGGTGCTGCTG 61.346 63.158 0.00 0.00 0.00 4.41
1413 2065 2.036256 GGGATGGTTGGTGCTGCT 59.964 61.111 0.00 0.00 0.00 4.24
1414 2066 2.283101 TGGGATGGTTGGTGCTGC 60.283 61.111 0.00 0.00 0.00 5.25
1491 2149 1.679305 GGCTCCCGTCTCACTCTGA 60.679 63.158 0.00 0.00 0.00 3.27
1517 2175 2.872858 GACTCTTTGCCGACAAGAAAGT 59.127 45.455 0.00 0.00 37.04 2.66
1587 2245 1.118965 TGTCTCCGAAGAACTGGGCA 61.119 55.000 0.00 0.00 31.93 5.36
2027 2695 3.432326 GCAGTTTAGCACTATGGCTACCT 60.432 47.826 0.00 0.00 45.50 3.08
2056 2724 5.639506 AGACTACACGTCATGAAATCTTTGG 59.360 40.000 0.00 0.00 45.32 3.28
2061 2729 6.467723 ACAAAGACTACACGTCATGAAATC 57.532 37.500 0.00 0.00 45.32 2.17
2068 2736 4.496360 TCACAAACAAAGACTACACGTCA 58.504 39.130 0.00 0.00 45.32 4.35
2072 2740 5.577835 TGCAATCACAAACAAAGACTACAC 58.422 37.500 0.00 0.00 0.00 2.90
2090 2758 5.683876 ACTAGACTACACAAGGATGCAAT 57.316 39.130 0.00 0.00 0.00 3.56
2117 2785 6.816640 CAGTGACATTTATTTTAGGACGGAGA 59.183 38.462 0.00 0.00 0.00 3.71
2134 2802 8.506437 CACAACATTGTACTAAATCAGTGACAT 58.494 33.333 0.00 0.00 39.91 3.06
2139 2807 7.882791 TCCATCACAACATTGTACTAAATCAGT 59.117 33.333 0.00 0.00 39.91 3.41
2140 2808 8.267620 TCCATCACAACATTGTACTAAATCAG 57.732 34.615 0.00 0.00 39.91 2.90
2154 2822 3.184382 TCTACTCCCTCCATCACAACA 57.816 47.619 0.00 0.00 0.00 3.33
2155 2823 4.020128 AGTTTCTACTCCCTCCATCACAAC 60.020 45.833 0.00 0.00 0.00 3.32
2174 2842 8.146412 ACTTTAGGTAACGACAGACATAAGTTT 58.854 33.333 0.00 0.00 46.39 2.66
2188 2856 8.091385 ACATAAGTTTTCCACTTTAGGTAACG 57.909 34.615 0.00 0.00 43.89 3.18
2218 3300 7.139896 TGCTGGTAACACAAAACACATATAG 57.860 36.000 0.00 0.00 46.17 1.31
2237 3320 2.987413 TGAATGCGTAAAGTTGCTGG 57.013 45.000 0.00 0.00 0.00 4.85
2242 3325 7.440523 AGAGAAGAAATGAATGCGTAAAGTT 57.559 32.000 0.00 0.00 0.00 2.66
2421 3832 4.947388 AGTGTTCAAAAGAAGTACCAGCAA 59.053 37.500 0.00 0.00 0.00 3.91
2467 3878 6.532657 CAGATGGCATTTTCCTAATGTTGTTC 59.467 38.462 0.00 0.00 0.00 3.18
2615 4029 7.441157 CCGTTATAGCTCCACAAATATTCTGAA 59.559 37.037 0.00 0.00 0.00 3.02
2689 4264 5.560966 AGAGACACAAACGTTTTGAATGT 57.439 34.783 21.76 17.97 0.00 2.71
2697 4272 3.504520 ACACCAAAAGAGACACAAACGTT 59.495 39.130 0.00 0.00 0.00 3.99
2698 4273 3.078837 ACACCAAAAGAGACACAAACGT 58.921 40.909 0.00 0.00 0.00 3.99
2699 4274 3.374058 AGACACCAAAAGAGACACAAACG 59.626 43.478 0.00 0.00 0.00 3.60
2702 4277 4.331968 ACAAGACACCAAAAGAGACACAA 58.668 39.130 0.00 0.00 0.00 3.33
2762 4609 0.886563 AGGATTTGAAGCAGTGCAGC 59.113 50.000 19.20 9.12 0.00 5.25
2791 4638 6.413892 TGCTTCCATAACATGAATCACACTA 58.586 36.000 0.00 0.00 0.00 2.74
2820 4668 8.082242 GGAACATGTAAAATAACAAGAACTGCT 58.918 33.333 0.00 0.00 32.02 4.24
2823 4671 9.574516 AGAGGAACATGTAAAATAACAAGAACT 57.425 29.630 0.00 0.00 32.02 3.01
2856 4704 5.041940 ACGTGAACTATTAGAGCGAAATCC 58.958 41.667 0.00 0.00 0.00 3.01
2857 4705 6.570690 AACGTGAACTATTAGAGCGAAATC 57.429 37.500 0.00 0.00 0.00 2.17
2858 4706 6.588756 TCAAACGTGAACTATTAGAGCGAAAT 59.411 34.615 0.00 0.00 0.00 2.17
2860 4708 5.463286 TCAAACGTGAACTATTAGAGCGAA 58.537 37.500 0.00 0.00 0.00 4.70
2861 4709 5.050644 TCAAACGTGAACTATTAGAGCGA 57.949 39.130 0.00 0.00 0.00 4.93
2862 4710 5.515270 TCATCAAACGTGAACTATTAGAGCG 59.485 40.000 0.00 0.00 37.30 5.03
2863 4711 6.310467 TGTCATCAAACGTGAACTATTAGAGC 59.690 38.462 0.00 0.00 37.30 4.09
2891 4745 7.134362 TGCCAGAGAAGAATATCTGAAGAAT 57.866 36.000 3.83 0.00 44.68 2.40
2899 4753 5.001874 TGATGCATGCCAGAGAAGAATATC 58.998 41.667 16.68 7.23 0.00 1.63
2913 4767 2.489329 ACTGGTACAAGTTGATGCATGC 59.511 45.455 11.82 11.82 38.70 4.06
2978 4832 0.387202 TATTCGCCTGAGCTGAGAGC 59.613 55.000 0.01 2.52 42.84 4.09
2982 4836 4.517285 AGAAAAATATTCGCCTGAGCTGA 58.483 39.130 0.00 0.00 36.60 4.26
2991 4845 7.759433 TGATTTGGGAGAAAGAAAAATATTCGC 59.241 33.333 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.