Multiple sequence alignment - TraesCS7B01G373900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G373900 chr7B 100.000 4246 0 0 1 4246 639384232 639379987 0.000000e+00 7841.0
1 TraesCS7B01G373900 chr7B 80.690 927 162 10 1000 1910 639277924 639278849 0.000000e+00 704.0
2 TraesCS7B01G373900 chr7B 82.639 144 23 2 776 919 725811219 725811078 4.460000e-25 126.0
3 TraesCS7B01G373900 chr7D 91.477 1666 113 9 679 2337 576734466 576736109 0.000000e+00 2263.0
4 TraesCS7B01G373900 chr7D 90.605 628 49 5 65 687 576733823 576734445 0.000000e+00 824.0
5 TraesCS7B01G373900 chr7D 79.702 1074 184 14 1000 2040 576656210 576657282 0.000000e+00 745.0
6 TraesCS7B01G373900 chr7D 82.383 386 25 23 3876 4242 576746549 576746910 3.210000e-76 296.0
7 TraesCS7B01G373900 chr7D 87.547 265 14 2 2965 3229 576743695 576743940 5.370000e-74 289.0
8 TraesCS7B01G373900 chr7D 79.186 442 57 15 2966 3404 576696344 576695935 1.500000e-69 274.0
9 TraesCS7B01G373900 chr7D 86.517 178 13 5 4001 4167 576695711 576695534 7.250000e-43 185.0
10 TraesCS7B01G373900 chr7D 82.635 167 18 2 382 548 576704739 576704584 2.060000e-28 137.0
11 TraesCS7B01G373900 chr7D 94.048 84 5 0 3796 3879 576746025 576746108 1.240000e-25 128.0
12 TraesCS7B01G373900 chr7D 81.437 167 20 2 382 548 576701704 576701549 4.460000e-25 126.0
13 TraesCS7B01G373900 chr7D 75.221 339 40 18 2526 2836 576813716 576813394 2.070000e-23 121.0
14 TraesCS7B01G373900 chr7D 94.828 58 3 0 13 70 576733717 576733774 1.630000e-14 91.6
15 TraesCS7B01G373900 chr7A 93.503 1062 69 0 965 2026 668524237 668525298 0.000000e+00 1580.0
16 TraesCS7B01G373900 chr7A 81.250 1072 172 16 1000 2044 668734287 668733218 0.000000e+00 839.0
17 TraesCS7B01G373900 chr7A 82.088 910 80 38 2081 2968 668525298 668526146 0.000000e+00 701.0
18 TraesCS7B01G373900 chr7A 89.356 357 32 4 198 553 668523643 668523994 1.080000e-120 444.0
19 TraesCS7B01G373900 chr7A 85.749 414 58 1 1632 2044 668059901 668060314 1.810000e-118 436.0
20 TraesCS7B01G373900 chr7A 80.153 655 66 24 2965 3593 668526184 668526800 8.430000e-117 431.0
21 TraesCS7B01G373900 chr7A 87.062 371 13 16 3888 4245 668527401 668527749 1.850000e-103 387.0
22 TraesCS7B01G373900 chr7A 86.822 129 15 2 559 687 668524041 668524167 4.430000e-30 143.0
23 TraesCS7B01G373900 chr7A 82.500 120 19 2 1037 1155 668312300 668312182 2.090000e-18 104.0
24 TraesCS7B01G373900 chr7A 81.481 108 18 2 1000 1106 667229468 667229574 2.100000e-13 87.9
25 TraesCS7B01G373900 chr7A 91.111 45 4 0 3796 3840 668527348 668527392 1.270000e-05 62.1
26 TraesCS7B01G373900 chr7A 94.286 35 2 0 885 919 165945097 165945063 2.000000e-03 54.7
27 TraesCS7B01G373900 chr2B 85.950 242 27 5 679 919 740797693 740797928 7.050000e-63 252.0
28 TraesCS7B01G373900 chr1B 82.251 231 34 5 682 912 657336934 657336711 4.330000e-45 193.0
29 TraesCS7B01G373900 chr5D 82.069 145 13 8 776 919 358595804 358595672 1.250000e-20 111.0
30 TraesCS7B01G373900 chr2D 90.566 53 3 2 868 919 589498057 589498006 7.620000e-08 69.4
31 TraesCS7B01G373900 chr6D 94.737 38 1 1 890 926 192060230 192060193 1.650000e-04 58.4
32 TraesCS7B01G373900 chrUn 96.875 32 1 0 889 920 8468838 8468807 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G373900 chr7B 639379987 639384232 4245 True 7841.000000 7841 100.000000 1 4246 1 chr7B.!!$R1 4245
1 TraesCS7B01G373900 chr7B 639277924 639278849 925 False 704.000000 704 80.690000 1000 1910 1 chr7B.!!$F1 910
2 TraesCS7B01G373900 chr7D 576733717 576736109 2392 False 1059.533333 2263 92.303333 13 2337 3 chr7D.!!$F2 2324
3 TraesCS7B01G373900 chr7D 576656210 576657282 1072 False 745.000000 745 79.702000 1000 2040 1 chr7D.!!$F1 1040
4 TraesCS7B01G373900 chr7D 576743695 576746910 3215 False 237.666667 296 87.992667 2965 4242 3 chr7D.!!$F3 1277
5 TraesCS7B01G373900 chr7D 576695534 576696344 810 True 229.500000 274 82.851500 2966 4167 2 chr7D.!!$R2 1201
6 TraesCS7B01G373900 chr7A 668733218 668734287 1069 True 839.000000 839 81.250000 1000 2044 1 chr7A.!!$R3 1044
7 TraesCS7B01G373900 chr7A 668523643 668527749 4106 False 535.442857 1580 87.156429 198 4245 7 chr7A.!!$F3 4047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 966 0.028110 GATCTGTTTTGCCGATCCGC 59.972 55.0 0.0 0.0 0.00 5.54 F
1393 1551 0.251634 TATGTTGACCCTGCGATGCA 59.748 50.0 0.0 0.0 36.92 3.96 F
2672 2842 0.033503 TCGCAGGTCCACCTAGATCA 60.034 55.0 0.0 0.0 46.65 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 2129 0.407139 AGGATCAAAGGGCAGCTTGT 59.593 50.0 0.00 0.0 0.0 3.16 R
2884 3058 0.667792 GTCTGAGCCGGTCTGTGTTC 60.668 60.0 1.90 0.0 0.0 3.18 R
3772 5698 0.612732 CAAGCTTTGAGGCCATGGGA 60.613 55.0 15.13 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.706833 AGGGATGGCAAATCAAACATTTTTC 59.293 36.000 0.00 0.00 0.00 2.29
180 234 9.747898 ATTTGTCATCCTTATAACCTACACAAA 57.252 29.630 0.00 0.00 35.23 2.83
201 255 0.170116 TGCCATCAAAATCGTTCGCC 59.830 50.000 0.00 0.00 0.00 5.54
202 256 0.525455 GCCATCAAAATCGTTCGCCC 60.525 55.000 0.00 0.00 0.00 6.13
250 304 1.678970 GCCGGTCCTTTTCCATGCT 60.679 57.895 1.90 0.00 0.00 3.79
251 305 1.937546 GCCGGTCCTTTTCCATGCTG 61.938 60.000 1.90 0.00 0.00 4.41
255 309 1.538047 GTCCTTTTCCATGCTGCTCA 58.462 50.000 0.00 0.00 0.00 4.26
331 385 2.272471 CTTTCCCTTCCTCCCGCC 59.728 66.667 0.00 0.00 0.00 6.13
358 412 2.682494 TCCACCTCCGCACCTACC 60.682 66.667 0.00 0.00 0.00 3.18
361 415 4.007323 ACCTCCGCACCTACCCCT 62.007 66.667 0.00 0.00 0.00 4.79
364 418 2.682494 TCCGCACCTACCCCTCAC 60.682 66.667 0.00 0.00 0.00 3.51
527 587 0.108804 CTCTTAGCTGACGCCGGAAA 60.109 55.000 5.05 0.00 36.60 3.13
532 592 2.966309 GCTGACGCCGGAAAACCAG 61.966 63.158 5.05 5.49 0.00 4.00
548 608 2.516460 AGCCTATCGACCTCGCGT 60.516 61.111 5.77 0.00 39.60 6.01
627 728 4.680237 CCCGCGACCAGAAGCACA 62.680 66.667 8.23 0.00 0.00 4.57
630 731 2.792290 CGCGACCAGAAGCACATCG 61.792 63.158 0.00 0.00 35.91 3.84
631 732 1.738099 GCGACCAGAAGCACATCGT 60.738 57.895 0.00 0.00 35.27 3.73
632 733 1.687494 GCGACCAGAAGCACATCGTC 61.687 60.000 0.00 0.00 35.27 4.20
695 824 4.745620 GCCGCCTCTATCTAGTTGTTTTAG 59.254 45.833 0.00 0.00 0.00 1.85
761 895 9.008289 GTAGTTTTAAGACGAACTAGATAGTGC 57.992 37.037 0.00 0.00 38.59 4.40
774 908 7.804843 ACTAGATAGTGCGAACTACAGTATT 57.195 36.000 5.09 0.00 34.53 1.89
811 945 2.226912 TGGAAATCCGGCAAAGTTTACG 59.773 45.455 0.00 5.23 39.43 3.18
832 966 0.028110 GATCTGTTTTGCCGATCCGC 59.972 55.000 0.00 0.00 0.00 5.54
857 991 3.993736 GCTGTCCCGCAAATTTTGTTTAT 59.006 39.130 10.65 0.00 0.00 1.40
888 1022 1.238439 AACGACATTTGCAGGACAGG 58.762 50.000 0.00 0.00 0.00 4.00
890 1024 1.308069 CGACATTTGCAGGACAGGGG 61.308 60.000 0.00 0.00 0.00 4.79
904 1038 0.608640 CAGGGGTATACGGGATCTGC 59.391 60.000 0.00 0.00 0.00 4.26
960 1094 0.976641 AACGTTCCATCTCCAGCAGA 59.023 50.000 0.00 0.00 34.78 4.26
982 1116 5.475909 AGAGAAGAAATTTCAGCTGCAATCA 59.524 36.000 19.99 0.00 0.00 2.57
1203 1361 1.048601 TCTTTCTCAGTGAAGCCCGT 58.951 50.000 0.00 0.00 35.89 5.28
1302 1460 3.057734 CGGTGTGTCAGAAACCTTCTAC 58.942 50.000 0.00 0.00 38.11 2.59
1312 1470 3.010250 AGAAACCTTCTACCATCCCCAAC 59.990 47.826 0.00 0.00 38.49 3.77
1344 1502 4.333926 GCACTGGTCTTCATGGATAGAAAC 59.666 45.833 0.00 0.00 0.00 2.78
1393 1551 0.251634 TATGTTGACCCTGCGATGCA 59.748 50.000 0.00 0.00 36.92 3.96
1401 1559 2.528743 CCTGCGATGCACGATCACC 61.529 63.158 11.94 0.00 45.77 4.02
1419 1577 4.487948 TCACCGTACTCAAAGAATTACCG 58.512 43.478 0.00 0.00 0.00 4.02
1521 1679 0.977627 AGATGGGAGCCGATGTCACA 60.978 55.000 0.00 0.00 0.00 3.58
1605 1765 1.073199 CAAGGCCCAGTTCTTCGGT 59.927 57.895 0.00 0.00 0.00 4.69
1619 1779 2.231478 TCTTCGGTGACATGAAGGAGAC 59.769 50.000 16.06 0.00 41.48 3.36
1689 1849 2.228059 GCCATGCTGCACTTCATCTAT 58.772 47.619 3.57 0.00 0.00 1.98
1699 1859 4.398044 TGCACTTCATCTATACTGACACGA 59.602 41.667 0.00 0.00 0.00 4.35
1708 1868 1.545841 TACTGACACGATGCCTGAGT 58.454 50.000 0.00 0.00 0.00 3.41
1719 1879 0.684535 TGCCTGAGTTTGATCGACCA 59.315 50.000 0.00 0.00 0.00 4.02
1722 1882 2.872038 GCCTGAGTTTGATCGACCACTT 60.872 50.000 0.00 0.00 0.00 3.16
1737 1897 0.962489 CACTTGAGGAGGTGACGACT 59.038 55.000 0.00 0.00 35.69 4.18
1816 1976 7.826252 AGCTGATTTGTGAAATAAAGCTCTCTA 59.174 33.333 10.69 0.00 42.65 2.43
1817 1977 8.619546 GCTGATTTGTGAAATAAAGCTCTCTAT 58.380 33.333 0.00 0.00 34.29 1.98
1901 2061 0.523072 CTCAAGGCCAAATGTGTCGG 59.477 55.000 5.01 0.00 0.00 4.79
1969 2129 5.192927 CAGATGGGTATAAGCACCTTGAAA 58.807 41.667 0.00 0.00 38.73 2.69
1984 2144 1.774110 TGAAACAAGCTGCCCTTTGA 58.226 45.000 7.06 0.00 0.00 2.69
2140 2305 9.621629 TTACCTAAAATGGGATACTTATGTGTG 57.378 33.333 0.00 0.00 0.00 3.82
2143 2308 7.773224 CCTAAAATGGGATACTTATGTGTGTCA 59.227 37.037 0.00 0.00 31.06 3.58
2190 2355 1.830279 TGCTTTCATTGCTCCTCCAG 58.170 50.000 0.00 0.00 0.00 3.86
2196 2361 4.640771 TTCATTGCTCCTCCAGTTTAGT 57.359 40.909 0.00 0.00 0.00 2.24
2197 2362 3.942829 TCATTGCTCCTCCAGTTTAGTG 58.057 45.455 0.00 0.00 0.00 2.74
2198 2363 3.582647 TCATTGCTCCTCCAGTTTAGTGA 59.417 43.478 0.00 0.00 0.00 3.41
2210 2375 9.245962 CCTCCAGTTTAGTGATAATTTAGTACG 57.754 37.037 0.00 0.00 0.00 3.67
2240 2405 3.434299 CCAAGATTTGGTTGAATGCTTGC 59.566 43.478 0.00 0.00 45.93 4.01
2315 2480 2.971307 TCGTACATGATTTGCTCAGCA 58.029 42.857 0.00 0.00 37.28 4.41
2338 2503 1.133513 TGCCACACAATCCAGGTCTTT 60.134 47.619 0.00 0.00 0.00 2.52
2344 2509 5.335897 CCACACAATCCAGGTCTTTTGTATG 60.336 44.000 0.00 0.00 31.45 2.39
2388 2553 8.971321 CACCTTCACTTTCACATCAAATAAAAG 58.029 33.333 0.00 0.00 34.05 2.27
2389 2554 8.695456 ACCTTCACTTTCACATCAAATAAAAGT 58.305 29.630 0.00 0.00 39.94 2.66
2471 2636 8.815141 CAAAACATGGACAAGACATCAAATAA 57.185 30.769 0.00 0.00 0.00 1.40
2472 2637 9.258826 CAAAACATGGACAAGACATCAAATAAA 57.741 29.630 0.00 0.00 0.00 1.40
2503 2668 7.780008 TTGTATATACTTTCCACAACATCCG 57.220 36.000 13.89 0.00 0.00 4.18
2514 2679 2.951642 CACAACATCCGGCAATATCCTT 59.048 45.455 0.00 0.00 0.00 3.36
2549 2714 7.693969 AATATTTGTGGAGCTATAATGGAGC 57.306 36.000 0.00 0.00 40.42 4.70
2625 2790 5.445964 AGGTTTGTGTCTATTTTGGTGTCT 58.554 37.500 0.00 0.00 0.00 3.41
2642 2807 3.632145 GTGTCTTGTCCATGTTTTGGTCT 59.368 43.478 0.00 0.00 46.52 3.85
2647 2812 5.306937 TCTTGTCCATGTTTTGGTCTCTCTA 59.693 40.000 0.00 0.00 46.52 2.43
2649 2814 5.491070 TGTCCATGTTTTGGTCTCTCTATG 58.509 41.667 0.00 0.00 46.52 2.23
2651 2816 6.212589 TGTCCATGTTTTGGTCTCTCTATGTA 59.787 38.462 0.00 0.00 46.52 2.29
2653 2818 7.770897 GTCCATGTTTTGGTCTCTCTATGTAAT 59.229 37.037 0.00 0.00 46.52 1.89
2654 2819 7.987458 TCCATGTTTTGGTCTCTCTATGTAATC 59.013 37.037 0.00 0.00 46.52 1.75
2655 2820 7.042456 CCATGTTTTGGTCTCTCTATGTAATCG 60.042 40.741 0.00 0.00 40.99 3.34
2657 2822 5.592104 TTTGGTCTCTCTATGTAATCGCA 57.408 39.130 0.00 0.00 0.00 5.10
2658 2823 4.837896 TGGTCTCTCTATGTAATCGCAG 57.162 45.455 0.00 0.00 0.00 5.18
2659 2824 3.570125 TGGTCTCTCTATGTAATCGCAGG 59.430 47.826 0.00 0.00 0.00 4.85
2660 2825 3.570550 GGTCTCTCTATGTAATCGCAGGT 59.429 47.826 0.00 0.00 0.00 4.00
2662 2827 3.821600 TCTCTCTATGTAATCGCAGGTCC 59.178 47.826 0.00 0.00 0.00 4.46
2663 2828 3.562182 TCTCTATGTAATCGCAGGTCCA 58.438 45.455 0.00 0.00 0.00 4.02
2664 2829 3.318275 TCTCTATGTAATCGCAGGTCCAC 59.682 47.826 0.00 0.00 0.00 4.02
2665 2830 2.364324 TCTATGTAATCGCAGGTCCACC 59.636 50.000 0.00 0.00 0.00 4.61
2667 2832 1.855295 TGTAATCGCAGGTCCACCTA 58.145 50.000 0.00 0.00 46.65 3.08
2668 2833 1.754803 TGTAATCGCAGGTCCACCTAG 59.245 52.381 0.00 0.00 46.65 3.02
2672 2842 0.033503 TCGCAGGTCCACCTAGATCA 60.034 55.000 0.00 0.00 46.65 2.92
2679 2849 3.456277 AGGTCCACCTAGATCATCAAACC 59.544 47.826 0.00 0.00 46.48 3.27
2700 2870 5.006386 ACCTTCAAGAGTTTGATCCATGTC 58.994 41.667 0.00 0.00 42.60 3.06
2704 2874 4.945543 TCAAGAGTTTGATCCATGTCATGG 59.054 41.667 23.92 23.92 43.75 3.66
2732 2902 8.143835 AGCACAATAGCTGTTCTTGTTATTTTT 58.856 29.630 0.00 0.00 44.66 1.94
2738 2908 7.873739 AGCTGTTCTTGTTATTTTTACATGC 57.126 32.000 0.00 0.00 0.00 4.06
2740 2910 8.792633 AGCTGTTCTTGTTATTTTTACATGCTA 58.207 29.630 0.00 0.00 0.00 3.49
2757 2927 7.233389 ACATGCTACTCTCGGTCATTATATT 57.767 36.000 0.00 0.00 0.00 1.28
2758 2928 7.671302 ACATGCTACTCTCGGTCATTATATTT 58.329 34.615 0.00 0.00 0.00 1.40
2759 2929 8.803235 ACATGCTACTCTCGGTCATTATATTTA 58.197 33.333 0.00 0.00 0.00 1.40
2760 2930 9.809096 CATGCTACTCTCGGTCATTATATTTAT 57.191 33.333 0.00 0.00 0.00 1.40
2799 2969 7.278868 GTCTCCACTAATAGTTCACCTTTGATG 59.721 40.741 0.00 0.00 0.00 3.07
2804 2974 8.950210 CACTAATAGTTCACCTTTGATGACAAT 58.050 33.333 0.00 0.00 35.85 2.71
2809 2979 9.911788 ATAGTTCACCTTTGATGACAATATTCT 57.088 29.630 0.00 0.00 35.85 2.40
2810 2980 8.273780 AGTTCACCTTTGATGACAATATTCTC 57.726 34.615 0.00 0.00 35.85 2.87
2811 2981 7.337942 AGTTCACCTTTGATGACAATATTCTCC 59.662 37.037 0.00 0.00 35.85 3.71
2812 2982 5.817296 TCACCTTTGATGACAATATTCTCCG 59.183 40.000 0.00 0.00 35.85 4.63
2813 2983 5.008019 CACCTTTGATGACAATATTCTCCGG 59.992 44.000 0.00 0.00 35.85 5.14
2814 2984 5.104527 ACCTTTGATGACAATATTCTCCGGA 60.105 40.000 2.93 2.93 35.85 5.14
2815 2985 6.000219 CCTTTGATGACAATATTCTCCGGAT 59.000 40.000 3.57 0.00 35.85 4.18
2823 2993 7.386851 TGACAATATTCTCCGGATATTCTTCC 58.613 38.462 3.57 0.00 0.00 3.46
2836 3006 0.749091 TTCTTCCCTGGCATGCATCG 60.749 55.000 21.36 6.58 0.00 3.84
2841 3011 0.748450 CCCTGGCATGCATCGATTTT 59.252 50.000 21.36 0.00 0.00 1.82
2846 3016 2.100584 TGGCATGCATCGATTTTTACCC 59.899 45.455 21.36 0.00 0.00 3.69
2860 3033 7.763528 TCGATTTTTACCCGTATAAGCTACAAA 59.236 33.333 0.00 0.00 0.00 2.83
2865 3039 4.874970 ACCCGTATAAGCTACAAATACCG 58.125 43.478 0.00 0.00 0.00 4.02
2868 3042 4.682860 CCGTATAAGCTACAAATACCGGTG 59.317 45.833 19.93 2.00 0.00 4.94
2871 3045 7.307694 CGTATAAGCTACAAATACCGGTGATA 58.692 38.462 19.93 0.00 0.00 2.15
2873 3047 9.084164 GTATAAGCTACAAATACCGGTGATATG 57.916 37.037 19.93 13.29 0.00 1.78
2884 3058 4.380531 ACCGGTGATATGACTGCTAAATG 58.619 43.478 6.12 0.00 0.00 2.32
2888 3062 5.523552 CGGTGATATGACTGCTAAATGAACA 59.476 40.000 0.00 0.00 0.00 3.18
2893 3067 5.869753 ATGACTGCTAAATGAACACAGAC 57.130 39.130 0.00 0.00 32.67 3.51
2894 3068 4.065088 TGACTGCTAAATGAACACAGACC 58.935 43.478 0.00 0.00 32.67 3.85
2895 3069 3.067106 ACTGCTAAATGAACACAGACCG 58.933 45.455 0.00 0.00 32.67 4.79
2898 3072 2.699954 CTAAATGAACACAGACCGGCT 58.300 47.619 0.00 0.00 0.00 5.52
2899 3073 1.523758 AAATGAACACAGACCGGCTC 58.476 50.000 0.00 0.00 0.00 4.70
2900 3074 0.396435 AATGAACACAGACCGGCTCA 59.604 50.000 0.00 0.00 0.00 4.26
2901 3075 0.036952 ATGAACACAGACCGGCTCAG 60.037 55.000 0.00 0.00 0.00 3.35
2902 3076 1.112916 TGAACACAGACCGGCTCAGA 61.113 55.000 0.00 0.00 0.00 3.27
2904 3078 1.399744 AACACAGACCGGCTCAGACA 61.400 55.000 0.00 0.00 0.00 3.41
2905 3079 1.367471 CACAGACCGGCTCAGACAA 59.633 57.895 0.00 0.00 0.00 3.18
2906 3080 0.036952 CACAGACCGGCTCAGACAAT 60.037 55.000 0.00 0.00 0.00 2.71
2907 3081 0.687354 ACAGACCGGCTCAGACAATT 59.313 50.000 0.00 0.00 0.00 2.32
2908 3082 1.072331 ACAGACCGGCTCAGACAATTT 59.928 47.619 0.00 0.00 0.00 1.82
3056 3281 9.269453 CTAATATCTGCATCTGACATTTTCTCA 57.731 33.333 0.00 0.00 0.00 3.27
3064 3289 4.801891 TCTGACATTTTCTCATTGCAAGC 58.198 39.130 4.94 0.00 0.00 4.01
3069 3294 4.986659 ACATTTTCTCATTGCAAGCTGTTC 59.013 37.500 4.94 0.00 0.00 3.18
3082 3307 4.397417 GCAAGCTGTTCCATTATCTGTCTT 59.603 41.667 0.00 0.00 0.00 3.01
3107 3332 7.836842 TCTTATAAGCTTATCAGTGTCACACA 58.163 34.615 22.09 0.43 36.74 3.72
3152 3377 1.270826 GGCTTGGCAAGAACCTTCTTC 59.729 52.381 30.45 9.12 45.23 2.87
3155 3380 0.250727 TGGCAAGAACCTTCTTCCCG 60.251 55.000 3.75 0.00 46.08 5.14
3162 3387 0.549469 AACCTTCTTCCCGGTGTTGT 59.451 50.000 0.00 0.00 32.86 3.32
3163 3388 0.549469 ACCTTCTTCCCGGTGTTGTT 59.451 50.000 0.00 0.00 30.90 2.83
3164 3389 1.770061 ACCTTCTTCCCGGTGTTGTTA 59.230 47.619 0.00 0.00 30.90 2.41
3165 3390 2.173143 ACCTTCTTCCCGGTGTTGTTAA 59.827 45.455 0.00 0.00 30.90 2.01
3166 3391 2.812011 CCTTCTTCCCGGTGTTGTTAAG 59.188 50.000 0.00 0.00 0.00 1.85
3167 3392 3.495453 CCTTCTTCCCGGTGTTGTTAAGA 60.495 47.826 0.00 0.00 0.00 2.10
3168 3393 3.116079 TCTTCCCGGTGTTGTTAAGAC 57.884 47.619 0.00 0.00 0.00 3.01
3179 3404 6.345565 CGGTGTTGTTAAGACTTAAGAGTTCG 60.346 42.308 10.09 6.42 35.88 3.95
3228 3453 4.046286 TGTTTTGATGCCTTATCCAGGT 57.954 40.909 0.00 0.00 46.07 4.00
3229 3454 4.415596 TGTTTTGATGCCTTATCCAGGTT 58.584 39.130 0.00 0.00 46.07 3.50
3230 3455 5.575157 TGTTTTGATGCCTTATCCAGGTTA 58.425 37.500 0.00 0.00 46.07 2.85
3231 3456 5.652014 TGTTTTGATGCCTTATCCAGGTTAG 59.348 40.000 0.00 0.00 46.07 2.34
3232 3457 4.437682 TTGATGCCTTATCCAGGTTAGG 57.562 45.455 0.00 0.00 46.07 2.69
3233 3458 2.711009 TGATGCCTTATCCAGGTTAGGG 59.289 50.000 1.83 1.83 46.07 3.53
3234 3459 0.843984 TGCCTTATCCAGGTTAGGGC 59.156 55.000 19.64 19.64 46.07 5.19
3235 3460 0.110678 GCCTTATCCAGGTTAGGGCC 59.889 60.000 16.78 0.00 46.07 5.80
3236 3461 1.518367 CCTTATCCAGGTTAGGGCCA 58.482 55.000 6.18 0.00 37.99 5.36
3237 3462 1.143073 CCTTATCCAGGTTAGGGCCAC 59.857 57.143 6.18 0.00 37.99 5.01
3238 3463 2.127708 CTTATCCAGGTTAGGGCCACT 58.872 52.381 6.18 1.30 0.00 4.00
3239 3464 2.280308 TATCCAGGTTAGGGCCACTT 57.720 50.000 6.18 0.00 0.00 3.16
3240 3465 0.625849 ATCCAGGTTAGGGCCACTTG 59.374 55.000 6.18 2.28 0.00 3.16
3241 3466 1.000896 CCAGGTTAGGGCCACTTGG 60.001 63.158 6.18 8.68 35.28 3.61
3242 3467 1.497309 CCAGGTTAGGGCCACTTGGA 61.497 60.000 17.36 0.00 42.69 3.53
3243 3468 0.625849 CAGGTTAGGGCCACTTGGAT 59.374 55.000 6.18 0.00 37.39 3.41
3244 3469 1.843851 CAGGTTAGGGCCACTTGGATA 59.156 52.381 6.18 0.00 37.39 2.59
3245 3470 2.241176 CAGGTTAGGGCCACTTGGATAA 59.759 50.000 6.18 0.00 37.39 1.75
3246 3471 2.241430 AGGTTAGGGCCACTTGGATAAC 59.759 50.000 6.18 3.55 37.39 1.89
3247 3472 2.651455 GTTAGGGCCACTTGGATAACC 58.349 52.381 6.18 0.00 37.39 2.85
3248 3473 2.241430 GTTAGGGCCACTTGGATAACCT 59.759 50.000 6.18 3.27 37.39 3.50
3251 3476 2.923629 AGGGCCACTTGGATAACCTTAA 59.076 45.455 6.18 0.00 37.39 1.85
3288 3737 3.173852 TCCACTTGGACAAGCCCTA 57.826 52.632 11.73 0.00 41.99 3.53
3302 3757 1.348036 AGCCCTAACTGCTCGAAAGTT 59.652 47.619 15.29 15.29 40.82 2.66
3306 3761 4.003648 CCCTAACTGCTCGAAAGTTGATT 58.996 43.478 18.72 0.78 38.32 2.57
3335 3797 9.964354 CTTCAGGAATATAATTGATGGTATGGA 57.036 33.333 0.00 0.00 0.00 3.41
3338 3800 9.182214 CAGGAATATAATTGATGGTATGGAAGG 57.818 37.037 0.00 0.00 0.00 3.46
3348 3810 2.024414 GGTATGGAAGGACATGCAACC 58.976 52.381 0.00 0.00 35.50 3.77
3349 3811 2.024414 GTATGGAAGGACATGCAACCC 58.976 52.381 0.00 0.00 34.20 4.11
3350 3812 0.706433 ATGGAAGGACATGCAACCCT 59.294 50.000 0.00 0.00 0.00 4.34
3351 3813 0.251297 TGGAAGGACATGCAACCCTG 60.251 55.000 5.78 0.00 0.00 4.45
3356 3818 1.963515 AGGACATGCAACCCTGTTTTC 59.036 47.619 0.00 0.00 0.00 2.29
3357 3819 1.963515 GGACATGCAACCCTGTTTTCT 59.036 47.619 0.00 0.00 0.00 2.52
3400 3901 8.583810 AATTGCATAGATGTTATTTGTCATGC 57.416 30.769 0.00 0.00 38.36 4.06
3430 3935 6.292596 GCAGCTCATTTACAGCTTACAGTATC 60.293 42.308 0.00 0.00 45.34 2.24
3449 3954 8.105829 ACAGTATCCTTCTTCAGAAATGACATT 58.894 33.333 0.00 0.00 33.07 2.71
3450 3955 8.610896 CAGTATCCTTCTTCAGAAATGACATTC 58.389 37.037 0.05 0.00 33.07 2.67
3453 3958 6.697395 TCCTTCTTCAGAAATGACATTCGTA 58.303 36.000 0.05 0.00 34.46 3.43
3461 3966 8.940768 TCAGAAATGACATTCGTAATACATCA 57.059 30.769 0.05 0.00 34.46 3.07
3470 3982 9.638300 GACATTCGTAATACATCAATTCTTGTC 57.362 33.333 0.00 0.00 0.00 3.18
3497 4010 9.722056 ACAAGAAGCTAGAAATTTTATTATGCG 57.278 29.630 0.00 0.00 0.00 4.73
3512 4025 7.579589 TTATTATGCGCAAAATTCCATATGC 57.420 32.000 17.11 0.00 35.49 3.14
3523 4036 8.117988 GCAAAATTCCATATGCTTATGTTGTTG 58.882 33.333 16.07 12.64 34.54 3.33
3524 4037 9.153721 CAAAATTCCATATGCTTATGTTGTTGT 57.846 29.630 16.07 3.18 34.54 3.32
3525 4038 9.723601 AAAATTCCATATGCTTATGTTGTTGTT 57.276 25.926 16.07 3.53 34.54 2.83
3529 4042 8.574251 TCCATATGCTTATGTTGTTGTTTACT 57.426 30.769 16.07 0.00 34.54 2.24
3530 4043 9.019656 TCCATATGCTTATGTTGTTGTTTACTT 57.980 29.630 16.07 0.00 34.54 2.24
3537 4050 7.856894 GCTTATGTTGTTGTTTACTTTTCGGTA 59.143 33.333 0.00 0.00 0.00 4.02
3552 5085 5.640189 TTTCGGTACCTCTATGCTATAGC 57.360 43.478 18.18 18.18 42.50 2.97
3554 5087 4.919793 TCGGTACCTCTATGCTATAGCTT 58.080 43.478 24.61 20.37 42.66 3.74
3561 5094 4.464244 CCTCTATGCTATAGCTTGTAGCCA 59.536 45.833 24.61 13.23 43.77 4.75
3593 5126 0.799534 GGCAACACGAAGCATGCATC 60.800 55.000 21.98 17.19 40.51 3.91
3595 5128 1.401931 GCAACACGAAGCATGCATCTT 60.402 47.619 21.98 8.47 38.63 2.40
3601 5200 5.842907 ACACGAAGCATGCATCTTACTATA 58.157 37.500 21.98 0.00 0.00 1.31
3602 5201 6.459066 ACACGAAGCATGCATCTTACTATAT 58.541 36.000 21.98 0.00 0.00 0.86
3603 5202 6.367149 ACACGAAGCATGCATCTTACTATATG 59.633 38.462 21.98 3.88 0.00 1.78
3642 5241 6.065374 TGTGCTAGGTTCAAGTGGAAAATTA 58.935 36.000 0.00 0.00 37.23 1.40
3685 5284 1.254975 GGTTACCCCGCCTGCATTTT 61.255 55.000 0.00 0.00 0.00 1.82
3687 5286 0.605589 TTACCCCGCCTGCATTTTTG 59.394 50.000 0.00 0.00 0.00 2.44
3717 5623 1.462670 CGACCTTTTCTTGAGAGCTGC 59.537 52.381 0.00 0.00 0.00 5.25
3721 5627 1.196354 CTTTTCTTGAGAGCTGCCGTG 59.804 52.381 0.00 0.00 0.00 4.94
3722 5628 0.392706 TTTCTTGAGAGCTGCCGTGA 59.607 50.000 0.00 0.00 0.00 4.35
3734 5660 0.461870 TGCCGTGATCTTTGATCCCG 60.462 55.000 5.66 5.66 0.00 5.14
3751 5677 7.286215 TGATCCCGATTCTTTACTACTAAGG 57.714 40.000 0.00 0.00 0.00 2.69
3760 5686 1.688772 TACTACTAAGGGCTGGAGCG 58.311 55.000 0.00 0.00 43.26 5.03
3763 5689 1.041447 TACTAAGGGCTGGAGCGACC 61.041 60.000 0.00 0.00 43.26 4.79
3765 5691 2.579684 CTAAGGGCTGGAGCGACCAC 62.580 65.000 1.68 0.75 44.64 4.16
3771 5697 3.633094 CTGGAGCGACCACGTCAGG 62.633 68.421 1.68 0.00 44.64 3.86
3772 5698 3.681835 GGAGCGACCACGTCAGGT 61.682 66.667 0.00 0.00 46.82 4.00
3778 5704 3.068881 ACCACGTCAGGTCCCATG 58.931 61.111 0.00 0.00 37.28 3.66
3779 5705 2.268920 CCACGTCAGGTCCCATGG 59.731 66.667 4.14 4.14 0.00 3.66
3780 5706 2.436646 CACGTCAGGTCCCATGGC 60.437 66.667 6.09 0.00 0.00 4.40
3781 5707 3.717294 ACGTCAGGTCCCATGGCC 61.717 66.667 6.09 2.73 0.00 5.36
3782 5708 3.402681 CGTCAGGTCCCATGGCCT 61.403 66.667 6.09 5.54 35.04 5.19
3783 5709 2.592308 GTCAGGTCCCATGGCCTC 59.408 66.667 6.09 0.00 31.73 4.70
3784 5710 2.124768 TCAGGTCCCATGGCCTCA 59.875 61.111 6.09 0.00 31.73 3.86
3785 5711 1.541118 TCAGGTCCCATGGCCTCAA 60.541 57.895 6.09 0.00 31.73 3.02
3786 5712 1.139498 TCAGGTCCCATGGCCTCAAA 61.139 55.000 6.09 0.00 31.73 2.69
3787 5713 0.682209 CAGGTCCCATGGCCTCAAAG 60.682 60.000 6.09 0.00 31.73 2.77
3788 5714 2.054453 GGTCCCATGGCCTCAAAGC 61.054 63.158 6.09 0.00 0.00 3.51
3789 5715 1.000396 GTCCCATGGCCTCAAAGCT 60.000 57.895 6.09 0.00 0.00 3.74
3790 5716 0.613012 GTCCCATGGCCTCAAAGCTT 60.613 55.000 6.09 0.00 0.00 3.74
3791 5717 0.612732 TCCCATGGCCTCAAAGCTTG 60.613 55.000 6.09 0.00 0.00 4.01
3792 5718 1.610554 CCCATGGCCTCAAAGCTTGG 61.611 60.000 6.09 0.00 36.42 3.61
3793 5719 1.610554 CCATGGCCTCAAAGCTTGGG 61.611 60.000 3.32 4.29 34.42 4.12
3794 5720 0.901580 CATGGCCTCAAAGCTTGGGT 60.902 55.000 3.32 0.00 0.00 4.51
3797 5723 1.077005 TGGCCTCAAAGCTTGGGTATT 59.923 47.619 3.32 0.00 0.00 1.89
3871 5797 4.011966 TGAGTTTCAGTCTGTGCATGAT 57.988 40.909 0.00 0.00 0.00 2.45
3987 6369 0.909610 GGTCAGATCAGGTGGTGGGA 60.910 60.000 0.00 0.00 0.00 4.37
3988 6370 0.984230 GTCAGATCAGGTGGTGGGAA 59.016 55.000 0.00 0.00 0.00 3.97
3989 6371 1.561542 GTCAGATCAGGTGGTGGGAAT 59.438 52.381 0.00 0.00 0.00 3.01
3990 6372 2.025887 GTCAGATCAGGTGGTGGGAATT 60.026 50.000 0.00 0.00 0.00 2.17
3991 6373 2.649312 TCAGATCAGGTGGTGGGAATTT 59.351 45.455 0.00 0.00 0.00 1.82
3992 6374 3.075882 TCAGATCAGGTGGTGGGAATTTT 59.924 43.478 0.00 0.00 0.00 1.82
3993 6375 3.445096 CAGATCAGGTGGTGGGAATTTTC 59.555 47.826 0.00 0.00 0.00 2.29
3994 6376 3.334881 AGATCAGGTGGTGGGAATTTTCT 59.665 43.478 0.00 0.00 0.00 2.52
3995 6377 4.540099 AGATCAGGTGGTGGGAATTTTCTA 59.460 41.667 0.00 0.00 0.00 2.10
3996 6378 4.946160 TCAGGTGGTGGGAATTTTCTAT 57.054 40.909 0.00 0.00 0.00 1.98
3997 6379 5.269554 TCAGGTGGTGGGAATTTTCTATT 57.730 39.130 0.00 0.00 0.00 1.73
3998 6380 5.650283 TCAGGTGGTGGGAATTTTCTATTT 58.350 37.500 0.00 0.00 0.00 1.40
3999 6381 5.714806 TCAGGTGGTGGGAATTTTCTATTTC 59.285 40.000 0.00 0.00 0.00 2.17
4000 6382 5.716703 CAGGTGGTGGGAATTTTCTATTTCT 59.283 40.000 0.00 0.00 0.00 2.52
4001 6383 5.716703 AGGTGGTGGGAATTTTCTATTTCTG 59.283 40.000 0.00 0.00 0.00 3.02
4002 6384 5.105351 GGTGGTGGGAATTTTCTATTTCTGG 60.105 44.000 0.00 0.00 0.00 3.86
4003 6385 5.480422 GTGGTGGGAATTTTCTATTTCTGGT 59.520 40.000 0.00 0.00 0.00 4.00
4004 6386 5.480073 TGGTGGGAATTTTCTATTTCTGGTG 59.520 40.000 0.00 0.00 0.00 4.17
4005 6387 5.105351 GGTGGGAATTTTCTATTTCTGGTGG 60.105 44.000 0.00 0.00 0.00 4.61
4006 6388 5.022787 TGGGAATTTTCTATTTCTGGTGGG 58.977 41.667 0.00 0.00 0.00 4.61
4018 6400 4.953940 TTCTGGTGGGGAATTTTTCTTG 57.046 40.909 0.00 0.00 0.00 3.02
4182 6580 2.325484 TCTTGCTGGGTGAACACTCTA 58.675 47.619 6.39 0.00 31.68 2.43
4185 6583 1.344438 TGCTGGGTGAACACTCTACTG 59.656 52.381 6.39 0.99 31.68 2.74
4245 6643 1.342874 ACTCCCTCATCTCCTGTCCAG 60.343 57.143 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.360269 CGTCAGCCAAATAGCAAAAATTGATTT 60.360 33.333 0.00 0.00 34.23 2.17
2 3 6.091169 CGTCAGCCAAATAGCAAAAATTGATT 59.909 34.615 0.00 0.00 34.23 2.57
4 5 4.922692 CGTCAGCCAAATAGCAAAAATTGA 59.077 37.500 0.00 0.00 34.23 2.57
6 7 4.881920 ACGTCAGCCAAATAGCAAAAATT 58.118 34.783 0.00 0.00 34.23 1.82
7 8 4.519540 ACGTCAGCCAAATAGCAAAAAT 57.480 36.364 0.00 0.00 34.23 1.82
8 9 4.295051 GAACGTCAGCCAAATAGCAAAAA 58.705 39.130 0.00 0.00 34.23 1.94
9 10 3.608241 CGAACGTCAGCCAAATAGCAAAA 60.608 43.478 0.00 0.00 34.23 2.44
10 11 2.095969 CGAACGTCAGCCAAATAGCAAA 60.096 45.455 0.00 0.00 34.23 3.68
11 12 1.463056 CGAACGTCAGCCAAATAGCAA 59.537 47.619 0.00 0.00 34.23 3.91
12 13 1.075542 CGAACGTCAGCCAAATAGCA 58.924 50.000 0.00 0.00 34.23 3.49
13 14 1.076332 ACGAACGTCAGCCAAATAGC 58.924 50.000 0.00 0.00 0.00 2.97
14 15 2.734606 TCAACGAACGTCAGCCAAATAG 59.265 45.455 0.00 0.00 0.00 1.73
15 16 2.734606 CTCAACGAACGTCAGCCAAATA 59.265 45.455 0.00 0.00 0.00 1.40
16 17 1.531149 CTCAACGAACGTCAGCCAAAT 59.469 47.619 0.00 0.00 0.00 2.32
17 18 0.934496 CTCAACGAACGTCAGCCAAA 59.066 50.000 0.00 0.00 0.00 3.28
18 19 0.103390 TCTCAACGAACGTCAGCCAA 59.897 50.000 0.00 0.00 0.00 4.52
19 20 0.318699 CTCTCAACGAACGTCAGCCA 60.319 55.000 0.00 0.00 0.00 4.75
20 21 1.009389 CCTCTCAACGAACGTCAGCC 61.009 60.000 0.00 0.00 0.00 4.85
21 22 1.009389 CCCTCTCAACGAACGTCAGC 61.009 60.000 0.00 0.00 0.00 4.26
22 23 0.596577 TCCCTCTCAACGAACGTCAG 59.403 55.000 0.00 0.58 0.00 3.51
23 24 1.067846 CATCCCTCTCAACGAACGTCA 60.068 52.381 0.00 0.00 0.00 4.35
167 221 6.849085 TTGATGGCAATTTGTGTAGGTTAT 57.151 33.333 0.00 0.00 0.00 1.89
168 222 6.656632 TTTGATGGCAATTTGTGTAGGTTA 57.343 33.333 0.00 0.00 33.25 2.85
169 223 5.543507 TTTGATGGCAATTTGTGTAGGTT 57.456 34.783 0.00 0.00 33.25 3.50
173 227 5.777802 ACGATTTTGATGGCAATTTGTGTA 58.222 33.333 0.00 0.00 33.25 2.90
180 234 2.529151 GCGAACGATTTTGATGGCAAT 58.471 42.857 0.00 0.00 33.25 3.56
201 255 1.234615 ACGTTCGTTGGATGGCAAGG 61.235 55.000 0.00 0.00 0.00 3.61
202 256 0.591170 AACGTTCGTTGGATGGCAAG 59.409 50.000 9.77 0.00 0.00 4.01
250 304 1.198759 GGGGTAGTGGGAAGTGAGCA 61.199 60.000 0.00 0.00 0.00 4.26
251 305 1.602771 GGGGTAGTGGGAAGTGAGC 59.397 63.158 0.00 0.00 0.00 4.26
255 309 2.285144 CCGGGGGTAGTGGGAAGT 60.285 66.667 0.00 0.00 0.00 3.01
305 359 4.309950 AAGGGAAAGGTCGCGCGT 62.310 61.111 30.98 10.20 41.49 6.01
315 369 3.712907 CGGCGGGAGGAAGGGAAA 61.713 66.667 0.00 0.00 0.00 3.13
358 412 2.356780 GGGAGGTGGTACGTGAGGG 61.357 68.421 0.00 0.00 0.00 4.30
361 415 1.304713 GGAGGGAGGTGGTACGTGA 60.305 63.158 0.00 0.00 0.00 4.35
364 418 0.752376 GAGAGGAGGGAGGTGGTACG 60.752 65.000 0.00 0.00 0.00 3.67
491 550 0.744771 GAGGATCAAACCGGCCAGAC 60.745 60.000 0.00 0.00 33.17 3.51
501 560 2.418746 GGCGTCAGCTAAGAGGATCAAA 60.419 50.000 0.00 0.00 44.37 2.69
527 587 2.017559 GCGAGGTCGATAGGCTGGTT 62.018 60.000 2.94 0.00 43.22 3.67
532 592 2.353607 CACGCGAGGTCGATAGGC 60.354 66.667 15.93 0.00 43.02 3.93
612 713 2.792290 CGATGTGCTTCTGGTCGCG 61.792 63.158 0.00 0.00 0.00 5.87
627 728 0.178987 AGTAGATGCCTCCGGACGAT 60.179 55.000 0.00 0.00 0.00 3.73
630 731 2.042800 GGAGTAGATGCCTCCGGAC 58.957 63.158 0.00 0.00 39.22 4.79
631 732 4.601042 GGAGTAGATGCCTCCGGA 57.399 61.111 2.93 2.93 39.22 5.14
695 824 8.562892 ACATAGCATAGTTCATACAAGCAAATC 58.437 33.333 0.00 0.00 0.00 2.17
747 881 5.152923 TGTAGTTCGCACTATCTAGTTCG 57.847 43.478 0.00 3.48 42.76 3.95
759 893 9.601971 GATTTAAAACAAATACTGTAGTTCGCA 57.398 29.630 0.00 0.00 37.23 5.10
767 901 8.842280 TCCAACTCGATTTAAAACAAATACTGT 58.158 29.630 0.00 0.00 41.27 3.55
768 902 9.672086 TTCCAACTCGATTTAAAACAAATACTG 57.328 29.630 0.00 0.00 0.00 2.74
774 908 6.858993 CGGATTTCCAACTCGATTTAAAACAA 59.141 34.615 0.00 0.00 35.14 2.83
797 931 0.730840 GATCCCGTAAACTTTGCCGG 59.269 55.000 0.00 0.00 40.12 6.13
832 966 2.153547 AAAATTTGCGGGACAGCGGG 62.154 55.000 0.00 0.00 40.67 6.13
837 971 4.310769 CCATAAACAAAATTTGCGGGACA 58.689 39.130 5.52 0.00 0.00 4.02
857 991 4.393680 GCAAATGTCGTTTACAGTATCCCA 59.606 41.667 0.00 0.00 42.70 4.37
888 1022 3.018149 CTCTAGCAGATCCCGTATACCC 58.982 54.545 0.00 0.00 0.00 3.69
890 1024 4.201970 GCATCTCTAGCAGATCCCGTATAC 60.202 50.000 0.00 0.00 40.20 1.47
960 1094 5.243283 AGTGATTGCAGCTGAAATTTCTTCT 59.757 36.000 21.18 11.76 0.00 2.85
998 1132 0.037139 TGTGCAGGCATTTTCCATGC 60.037 50.000 0.00 0.00 43.85 4.06
1122 1256 0.824109 CTTCCAGCTCGTACCCATCA 59.176 55.000 0.00 0.00 0.00 3.07
1203 1361 2.579657 CCTCACGCCCCACTGTGTA 61.580 63.158 7.08 0.00 37.38 2.90
1302 1460 4.319133 CCGAAGTGTTGGGGATGG 57.681 61.111 0.00 0.00 0.00 3.51
1312 1470 2.358737 GACCAGTGCCCCGAAGTG 60.359 66.667 0.00 0.00 0.00 3.16
1401 1559 2.280708 CGCCGGTAATTCTTTGAGTACG 59.719 50.000 1.90 0.00 0.00 3.67
1410 1568 1.747745 GGTTGGCGCCGGTAATTCT 60.748 57.895 23.90 0.00 0.00 2.40
1521 1679 1.792949 GACTCGTCGCACACAAGAAAT 59.207 47.619 0.00 0.00 0.00 2.17
1605 1765 0.969149 AGCACGTCTCCTTCATGTCA 59.031 50.000 0.00 0.00 0.00 3.58
1689 1849 1.545841 ACTCAGGCATCGTGTCAGTA 58.454 50.000 0.00 0.00 0.00 2.74
1699 1859 1.278985 TGGTCGATCAAACTCAGGCAT 59.721 47.619 0.00 0.00 0.00 4.40
1708 1868 2.028112 CCTCCTCAAGTGGTCGATCAAA 60.028 50.000 0.00 0.00 0.00 2.69
1719 1879 2.581216 TAGTCGTCACCTCCTCAAGT 57.419 50.000 0.00 0.00 0.00 3.16
1722 1882 1.763968 CCATAGTCGTCACCTCCTCA 58.236 55.000 0.00 0.00 0.00 3.86
1737 1897 3.056678 CCACAAGCAAATGTTGAGCCATA 60.057 43.478 0.00 0.00 0.00 2.74
1816 1976 1.019278 GTGTCGACGGTGATGCCAAT 61.019 55.000 11.62 0.00 36.97 3.16
1817 1977 1.666553 GTGTCGACGGTGATGCCAA 60.667 57.895 11.62 0.00 36.97 4.52
1924 2084 1.251251 GCCAACACAGCCTCAAGAAT 58.749 50.000 0.00 0.00 0.00 2.40
1969 2129 0.407139 AGGATCAAAGGGCAGCTTGT 59.593 50.000 0.00 0.00 0.00 3.16
1984 2144 3.172339 ACTTGAGAAGCTCAGTCAGGAT 58.828 45.455 8.48 0.00 41.75 3.24
2050 2215 5.220548 GCACAAACAGAGACTATGCAGTATG 60.221 44.000 0.00 0.00 34.21 2.39
2051 2216 4.872691 GCACAAACAGAGACTATGCAGTAT 59.127 41.667 0.00 0.00 34.21 2.12
2052 2217 4.021104 AGCACAAACAGAGACTATGCAGTA 60.021 41.667 0.00 0.00 34.21 2.74
2053 2218 3.070018 GCACAAACAGAGACTATGCAGT 58.930 45.455 0.00 0.00 37.87 4.40
2054 2219 3.332919 AGCACAAACAGAGACTATGCAG 58.667 45.455 0.00 0.00 34.03 4.41
2055 2220 3.407424 AGCACAAACAGAGACTATGCA 57.593 42.857 0.00 0.00 34.03 3.96
2056 2221 3.669023 GCAAGCACAAACAGAGACTATGC 60.669 47.826 0.00 0.00 0.00 3.14
2057 2222 3.499537 TGCAAGCACAAACAGAGACTATG 59.500 43.478 0.00 0.00 0.00 2.23
2058 2223 3.743521 TGCAAGCACAAACAGAGACTAT 58.256 40.909 0.00 0.00 0.00 2.12
2059 2224 3.192541 TGCAAGCACAAACAGAGACTA 57.807 42.857 0.00 0.00 0.00 2.59
2060 2225 2.042686 TGCAAGCACAAACAGAGACT 57.957 45.000 0.00 0.00 0.00 3.24
2154 2319 7.072177 TGAAAGCATTAAGTTCCTCATAACG 57.928 36.000 0.00 0.00 34.46 3.18
2171 2336 1.074405 ACTGGAGGAGCAATGAAAGCA 59.926 47.619 0.00 0.00 0.00 3.91
2315 2480 1.303888 CCTGGATTGTGTGGCAGCT 60.304 57.895 0.00 0.00 0.00 4.24
2338 2503 4.724399 TCAAAAGAACTCCCAGCATACAA 58.276 39.130 0.00 0.00 0.00 2.41
2344 2509 2.034685 GGTGTTCAAAAGAACTCCCAGC 59.965 50.000 15.08 0.70 40.74 4.85
2403 2568 5.293569 GGTTCAGGTGTGATTCCTATAAACG 59.706 44.000 0.00 0.00 33.54 3.60
2439 2604 3.882888 TCTTGTCCATGTTTTGGTCAGAC 59.117 43.478 0.00 0.00 46.52 3.51
2444 2609 4.214310 TGATGTCTTGTCCATGTTTTGGT 58.786 39.130 0.00 0.00 46.52 3.67
2446 2611 8.815141 TTATTTGATGTCTTGTCCATGTTTTG 57.185 30.769 0.00 0.00 0.00 2.44
2447 2612 9.480053 CTTTATTTGATGTCTTGTCCATGTTTT 57.520 29.630 0.00 0.00 0.00 2.43
2448 2613 8.641541 ACTTTATTTGATGTCTTGTCCATGTTT 58.358 29.630 0.00 0.00 0.00 2.83
2449 2614 8.181904 ACTTTATTTGATGTCTTGTCCATGTT 57.818 30.769 0.00 0.00 0.00 2.71
2450 2615 7.765695 ACTTTATTTGATGTCTTGTCCATGT 57.234 32.000 0.00 0.00 0.00 3.21
2482 2647 5.163290 TGCCGGATGTTGTGGAAAGTATATA 60.163 40.000 5.05 0.00 0.00 0.86
2483 2648 4.134563 GCCGGATGTTGTGGAAAGTATAT 58.865 43.478 5.05 0.00 0.00 0.86
2514 2679 8.050778 AGCTCCACAAATATTTCAAAATCGTA 57.949 30.769 0.00 0.00 0.00 3.43
2544 2709 7.365497 TGAATATTCAGACATCTTAGCTCCA 57.635 36.000 14.23 0.00 32.50 3.86
2581 2746 4.996122 CCTTGCATGCTTGAAAATACCAAA 59.004 37.500 20.33 0.00 0.00 3.28
2592 2757 2.129607 GACACAAACCTTGCATGCTTG 58.870 47.619 20.33 16.32 0.00 4.01
2642 2807 3.318275 GTGGACCTGCGATTACATAGAGA 59.682 47.826 0.00 0.00 0.00 3.10
2647 2812 1.204146 AGGTGGACCTGCGATTACAT 58.796 50.000 0.00 0.00 46.55 2.29
2658 2823 3.456277 AGGTTTGATGATCTAGGTGGACC 59.544 47.826 0.00 0.00 0.00 4.46
2659 2824 4.762289 AGGTTTGATGATCTAGGTGGAC 57.238 45.455 0.00 0.00 0.00 4.02
2660 2825 4.782691 TGAAGGTTTGATGATCTAGGTGGA 59.217 41.667 0.00 0.00 0.00 4.02
2662 2827 6.409704 TCTTGAAGGTTTGATGATCTAGGTG 58.590 40.000 0.00 0.00 0.00 4.00
2663 2828 6.214412 ACTCTTGAAGGTTTGATGATCTAGGT 59.786 38.462 0.00 0.00 0.00 3.08
2664 2829 6.648192 ACTCTTGAAGGTTTGATGATCTAGG 58.352 40.000 0.00 0.00 0.00 3.02
2665 2830 8.558973 AAACTCTTGAAGGTTTGATGATCTAG 57.441 34.615 9.82 0.00 34.83 2.43
2679 2849 6.552629 CATGACATGGATCAAACTCTTGAAG 58.447 40.000 7.60 0.00 44.64 3.02
2700 2870 3.693085 AGAACAGCTATTGTGCTTCCATG 59.307 43.478 0.00 0.00 43.61 3.66
2732 2902 7.939784 ATATAATGACCGAGAGTAGCATGTA 57.060 36.000 0.00 0.00 0.00 2.29
2761 2931 9.319060 ACTATTAGTGGAGACATGACATCATAT 57.681 33.333 0.00 0.00 46.14 1.78
2762 2932 8.712228 ACTATTAGTGGAGACATGACATCATA 57.288 34.615 0.00 0.00 46.14 2.15
2763 2933 7.609097 ACTATTAGTGGAGACATGACATCAT 57.391 36.000 0.00 0.00 46.14 2.45
2764 2934 7.124147 TGAACTATTAGTGGAGACATGACATCA 59.876 37.037 0.00 0.00 46.14 3.07
2765 2935 7.436673 GTGAACTATTAGTGGAGACATGACATC 59.563 40.741 0.00 0.00 46.14 3.06
2766 2936 7.268586 GTGAACTATTAGTGGAGACATGACAT 58.731 38.462 0.00 0.00 46.14 3.06
2767 2937 6.351033 GGTGAACTATTAGTGGAGACATGACA 60.351 42.308 0.00 0.00 46.14 3.58
2768 2938 6.043411 GGTGAACTATTAGTGGAGACATGAC 58.957 44.000 0.00 0.00 46.14 3.06
2769 2939 5.958380 AGGTGAACTATTAGTGGAGACATGA 59.042 40.000 0.00 0.00 46.14 3.07
2770 2940 6.227298 AGGTGAACTATTAGTGGAGACATG 57.773 41.667 0.00 0.00 46.14 3.21
2799 2969 6.819146 GGGAAGAATATCCGGAGAATATTGTC 59.181 42.308 11.34 4.01 40.62 3.18
2804 2974 4.777896 CCAGGGAAGAATATCCGGAGAATA 59.222 45.833 11.34 0.00 40.62 1.75
2805 2975 3.584848 CCAGGGAAGAATATCCGGAGAAT 59.415 47.826 11.34 0.00 40.62 2.40
2806 2976 2.972713 CCAGGGAAGAATATCCGGAGAA 59.027 50.000 11.34 0.00 40.62 2.87
2807 2977 2.609747 CCAGGGAAGAATATCCGGAGA 58.390 52.381 11.34 5.47 40.62 3.71
2808 2978 1.002544 GCCAGGGAAGAATATCCGGAG 59.997 57.143 11.34 0.00 40.62 4.63
2809 2979 1.056660 GCCAGGGAAGAATATCCGGA 58.943 55.000 6.61 6.61 40.62 5.14
2810 2980 0.764890 TGCCAGGGAAGAATATCCGG 59.235 55.000 0.00 0.00 40.62 5.14
2811 2981 2.430465 CATGCCAGGGAAGAATATCCG 58.570 52.381 0.00 0.00 40.62 4.18
2812 2982 2.165998 GCATGCCAGGGAAGAATATCC 58.834 52.381 6.36 0.00 38.86 2.59
2813 2983 2.867624 TGCATGCCAGGGAAGAATATC 58.132 47.619 16.68 0.00 0.00 1.63
2814 2984 3.428532 GATGCATGCCAGGGAAGAATAT 58.571 45.455 16.68 0.00 0.00 1.28
2815 2985 2.811504 CGATGCATGCCAGGGAAGAATA 60.812 50.000 16.68 0.00 0.00 1.75
2823 2993 2.589798 AAAAATCGATGCATGCCAGG 57.410 45.000 16.68 3.79 0.00 4.45
2841 3011 6.446318 CGGTATTTGTAGCTTATACGGGTAA 58.554 40.000 0.00 0.00 0.00 2.85
2846 3016 5.522456 TCACCGGTATTTGTAGCTTATACG 58.478 41.667 6.87 0.00 0.00 3.06
2860 3033 5.801531 TTTAGCAGTCATATCACCGGTAT 57.198 39.130 6.87 4.17 0.00 2.73
2865 3039 6.316140 TGTGTTCATTTAGCAGTCATATCACC 59.684 38.462 0.00 0.00 0.00 4.02
2868 3042 7.254590 GGTCTGTGTTCATTTAGCAGTCATATC 60.255 40.741 0.00 0.00 0.00 1.63
2871 3045 4.697352 GGTCTGTGTTCATTTAGCAGTCAT 59.303 41.667 0.00 0.00 0.00 3.06
2873 3047 3.123621 CGGTCTGTGTTCATTTAGCAGTC 59.876 47.826 0.00 0.00 0.00 3.51
2884 3058 0.667792 GTCTGAGCCGGTCTGTGTTC 60.668 60.000 1.90 0.00 0.00 3.18
2888 3062 0.687354 AATTGTCTGAGCCGGTCTGT 59.313 50.000 1.90 0.00 0.00 3.41
2930 3114 8.203485 TGCTATCTACATGTGTGATATTGTCAA 58.797 33.333 9.11 0.00 38.90 3.18
2932 3116 8.084684 TCTGCTATCTACATGTGTGATATTGTC 58.915 37.037 9.11 6.91 0.00 3.18
2934 3118 8.087136 ACTCTGCTATCTACATGTGTGATATTG 58.913 37.037 9.11 7.00 0.00 1.90
2942 3126 8.709386 AAACTTTACTCTGCTATCTACATGTG 57.291 34.615 9.11 0.00 0.00 3.21
2953 3137 8.792830 TTGCATAGAATAAACTTTACTCTGCT 57.207 30.769 3.28 0.00 33.83 4.24
2954 3138 9.278734 GTTTGCATAGAATAAACTTTACTCTGC 57.721 33.333 3.28 0.00 32.92 4.26
3082 3307 7.836842 TGTGTGACACTGATAAGCTTATAAGA 58.163 34.615 30.19 10.89 35.11 2.10
3107 3332 4.253685 GCACACACTGGTTATGTATCACT 58.746 43.478 0.00 0.00 0.00 3.41
3152 3377 4.634199 TCTTAAGTCTTAACAACACCGGG 58.366 43.478 6.32 0.00 0.00 5.73
3155 3380 6.478016 ACGAACTCTTAAGTCTTAACAACACC 59.522 38.462 1.63 0.00 33.48 4.16
3162 3387 8.807667 ATCGAAAACGAACTCTTAAGTCTTAA 57.192 30.769 1.63 4.97 33.48 1.85
3163 3388 9.897744 TTATCGAAAACGAACTCTTAAGTCTTA 57.102 29.630 1.63 0.00 33.48 2.10
3164 3389 8.807667 TTATCGAAAACGAACTCTTAAGTCTT 57.192 30.769 1.63 0.00 33.48 3.01
3165 3390 8.807667 TTTATCGAAAACGAACTCTTAAGTCT 57.192 30.769 1.63 0.00 33.48 3.24
3166 3391 8.160976 CCTTTATCGAAAACGAACTCTTAAGTC 58.839 37.037 1.63 0.00 33.48 3.01
3167 3392 7.117379 CCCTTTATCGAAAACGAACTCTTAAGT 59.883 37.037 1.63 0.00 37.32 2.24
3168 3393 7.453838 CCCTTTATCGAAAACGAACTCTTAAG 58.546 38.462 0.00 0.00 0.00 1.85
3179 3404 6.581166 CACTAAACTTGCCCTTTATCGAAAAC 59.419 38.462 0.00 0.00 0.00 2.43
3228 3453 2.568979 AGGTTATCCAAGTGGCCCTAA 58.431 47.619 0.00 0.00 35.89 2.69
3229 3454 2.280308 AGGTTATCCAAGTGGCCCTA 57.720 50.000 0.00 0.00 35.89 3.53
3230 3455 1.382914 AAGGTTATCCAAGTGGCCCT 58.617 50.000 0.00 0.00 35.89 5.19
3231 3456 3.288092 CTTAAGGTTATCCAAGTGGCCC 58.712 50.000 0.00 0.00 35.89 5.80
3232 3457 3.053917 TCCTTAAGGTTATCCAAGTGGCC 60.054 47.826 21.04 0.00 36.34 5.36
3233 3458 3.945921 GTCCTTAAGGTTATCCAAGTGGC 59.054 47.826 21.04 0.00 36.34 5.01
3234 3459 5.189934 AGAGTCCTTAAGGTTATCCAAGTGG 59.810 44.000 21.04 0.00 36.34 4.00
3235 3460 6.301169 AGAGTCCTTAAGGTTATCCAAGTG 57.699 41.667 21.04 0.00 36.34 3.16
3236 3461 6.070136 GGAAGAGTCCTTAAGGTTATCCAAGT 60.070 42.308 21.04 2.82 41.24 3.16
3237 3462 6.350103 GGAAGAGTCCTTAAGGTTATCCAAG 58.650 44.000 21.04 0.00 41.24 3.61
3238 3463 6.309389 GGAAGAGTCCTTAAGGTTATCCAA 57.691 41.667 21.04 0.00 41.24 3.53
3239 3464 5.952347 GGAAGAGTCCTTAAGGTTATCCA 57.048 43.478 21.04 0.00 41.24 3.41
3286 3735 7.763172 AGATAATCAACTTTCGAGCAGTTAG 57.237 36.000 10.77 7.03 32.48 2.34
3288 3737 6.650807 TGAAGATAATCAACTTTCGAGCAGTT 59.349 34.615 6.31 6.31 34.67 3.16
3335 3797 2.086610 AAACAGGGTTGCATGTCCTT 57.913 45.000 0.00 0.00 0.00 3.36
3338 3800 3.733443 AAGAAAACAGGGTTGCATGTC 57.267 42.857 0.00 0.00 0.00 3.06
3348 3810 9.528018 TTCTTAGCATTTACAAAAGAAAACAGG 57.472 29.630 0.00 0.00 34.24 4.00
3378 3842 6.696441 TGCATGACAAATAACATCTATGCA 57.304 33.333 0.00 0.00 44.93 3.96
3383 3847 7.337480 TGCTTATGCATGACAAATAACATCT 57.663 32.000 10.16 0.00 45.31 2.90
3400 3901 5.496133 AAGCTGTAAATGAGCTGCTTATG 57.504 39.130 7.75 0.00 46.32 1.90
3430 3935 5.869753 ACGAATGTCATTTCTGAAGAAGG 57.130 39.130 0.00 0.00 35.21 3.46
3461 3966 7.807977 TTTCTAGCTTCTTGTGACAAGAATT 57.192 32.000 33.18 26.43 35.90 2.17
3463 3968 7.807977 AATTTCTAGCTTCTTGTGACAAGAA 57.192 32.000 31.60 31.60 35.25 2.52
3495 4008 4.984161 ACATAAGCATATGGAATTTTGCGC 59.016 37.500 13.16 0.00 42.71 6.09
3496 4009 6.476380 ACAACATAAGCATATGGAATTTTGCG 59.524 34.615 13.16 0.00 42.71 4.85
3497 4010 7.775397 ACAACATAAGCATATGGAATTTTGC 57.225 32.000 13.16 0.00 42.71 3.68
3512 4025 9.161684 GTACCGAAAAGTAAACAACAACATAAG 57.838 33.333 0.00 0.00 0.00 1.73
3523 4036 6.104665 AGCATAGAGGTACCGAAAAGTAAAC 58.895 40.000 6.18 0.00 0.00 2.01
3524 4037 6.290294 AGCATAGAGGTACCGAAAAGTAAA 57.710 37.500 6.18 0.00 0.00 2.01
3525 4038 5.927281 AGCATAGAGGTACCGAAAAGTAA 57.073 39.130 6.18 0.00 0.00 2.24
3527 4040 6.294620 GCTATAGCATAGAGGTACCGAAAAGT 60.295 42.308 20.01 0.00 41.59 2.66
3529 4042 5.773680 AGCTATAGCATAGAGGTACCGAAAA 59.226 40.000 26.07 0.00 39.07 2.29
3530 4043 5.322754 AGCTATAGCATAGAGGTACCGAAA 58.677 41.667 26.07 0.00 39.07 3.46
3537 4050 4.464597 GGCTACAAGCTATAGCATAGAGGT 59.535 45.833 26.07 15.35 43.22 3.85
3552 5085 4.567318 GGCATCCCTGGCTACAAG 57.433 61.111 0.00 0.00 44.27 3.16
3601 5200 9.589461 ACCTAGCACATATAGTCTACTTTACAT 57.411 33.333 0.00 0.00 0.00 2.29
3602 5201 8.991783 ACCTAGCACATATAGTCTACTTTACA 57.008 34.615 0.00 0.00 0.00 2.41
3603 5202 9.896263 GAACCTAGCACATATAGTCTACTTTAC 57.104 37.037 0.00 0.00 0.00 2.01
3615 5214 5.435686 TTCCACTTGAACCTAGCACATAT 57.564 39.130 0.00 0.00 0.00 1.78
3619 5218 5.453567 AATTTTCCACTTGAACCTAGCAC 57.546 39.130 0.00 0.00 31.05 4.40
3621 5220 6.206829 ACTGTAATTTTCCACTTGAACCTAGC 59.793 38.462 0.00 0.00 31.05 3.42
3622 5221 7.745620 ACTGTAATTTTCCACTTGAACCTAG 57.254 36.000 0.00 0.00 31.05 3.02
3642 5241 4.156556 CACAAAGCCTGCACAATATACTGT 59.843 41.667 0.00 0.00 0.00 3.55
3674 5273 0.854062 CACACACAAAAATGCAGGCG 59.146 50.000 0.00 0.00 0.00 5.52
3687 5286 2.277084 AGAAAAGGTCGTGACACACAC 58.723 47.619 6.37 1.27 45.11 3.82
3699 5599 1.879796 CGGCAGCTCTCAAGAAAAGGT 60.880 52.381 0.00 0.00 0.00 3.50
3717 5623 2.533266 ATCGGGATCAAAGATCACGG 57.467 50.000 25.73 11.65 44.37 4.94
3721 5627 8.145122 AGTAGTAAAGAATCGGGATCAAAGATC 58.855 37.037 0.00 0.00 0.00 2.75
3722 5628 8.024145 AGTAGTAAAGAATCGGGATCAAAGAT 57.976 34.615 0.00 0.00 0.00 2.40
3734 5660 6.481434 TCCAGCCCTTAGTAGTAAAGAATC 57.519 41.667 0.00 0.00 0.00 2.52
3763 5689 2.436646 GCCATGGGACCTGACGTG 60.437 66.667 15.13 0.00 0.00 4.49
3765 5691 3.391665 GAGGCCATGGGACCTGACG 62.392 68.421 15.08 0.00 36.05 4.35
3771 5697 0.613012 AAGCTTTGAGGCCATGGGAC 60.613 55.000 15.13 0.00 0.00 4.46
3772 5698 0.612732 CAAGCTTTGAGGCCATGGGA 60.613 55.000 15.13 0.00 0.00 4.37
3773 5699 1.610554 CCAAGCTTTGAGGCCATGGG 61.611 60.000 15.13 0.00 36.60 4.00
3774 5700 1.610554 CCCAAGCTTTGAGGCCATGG 61.611 60.000 7.63 7.63 38.57 3.66
3775 5701 0.901580 ACCCAAGCTTTGAGGCCATG 60.902 55.000 5.01 0.00 0.00 3.66
3776 5702 0.704076 TACCCAAGCTTTGAGGCCAT 59.296 50.000 5.01 0.00 0.00 4.40
3777 5703 0.704076 ATACCCAAGCTTTGAGGCCA 59.296 50.000 5.01 0.00 0.00 5.36
3778 5704 1.478105 CAATACCCAAGCTTTGAGGCC 59.522 52.381 0.00 0.00 0.00 5.19
3779 5705 2.171003 ACAATACCCAAGCTTTGAGGC 58.829 47.619 0.00 0.00 0.00 4.70
3780 5706 4.871933 AAACAATACCCAAGCTTTGAGG 57.128 40.909 0.00 0.07 0.00 3.86
3781 5707 5.841810 TCAAAACAATACCCAAGCTTTGAG 58.158 37.500 0.00 0.00 30.23 3.02
3782 5708 5.860941 TCAAAACAATACCCAAGCTTTGA 57.139 34.783 0.00 0.00 0.00 2.69
3783 5709 5.345741 CGATCAAAACAATACCCAAGCTTTG 59.654 40.000 0.00 0.00 0.00 2.77
3784 5710 5.242838 TCGATCAAAACAATACCCAAGCTTT 59.757 36.000 0.00 0.00 0.00 3.51
3785 5711 4.764823 TCGATCAAAACAATACCCAAGCTT 59.235 37.500 0.00 0.00 0.00 3.74
3786 5712 4.331968 TCGATCAAAACAATACCCAAGCT 58.668 39.130 0.00 0.00 0.00 3.74
3787 5713 4.695217 TCGATCAAAACAATACCCAAGC 57.305 40.909 0.00 0.00 0.00 4.01
3788 5714 6.034898 GCAAATCGATCAAAACAATACCCAAG 59.965 38.462 0.00 0.00 0.00 3.61
3789 5715 5.866633 GCAAATCGATCAAAACAATACCCAA 59.133 36.000 0.00 0.00 0.00 4.12
3790 5716 5.047731 TGCAAATCGATCAAAACAATACCCA 60.048 36.000 0.00 0.00 0.00 4.51
3791 5717 5.406649 TGCAAATCGATCAAAACAATACCC 58.593 37.500 0.00 0.00 0.00 3.69
3792 5718 6.942886 TTGCAAATCGATCAAAACAATACC 57.057 33.333 0.00 0.00 0.00 2.73
3793 5719 6.942224 CGTTTGCAAATCGATCAAAACAATAC 59.058 34.615 16.21 0.00 41.26 1.89
3794 5720 6.088749 CCGTTTGCAAATCGATCAAAACAATA 59.911 34.615 25.40 0.00 41.26 1.90
3797 5723 3.733224 CCGTTTGCAAATCGATCAAAACA 59.267 39.130 25.40 0.00 41.26 2.83
3871 5797 2.157834 ATACGAACGGTCAACTGCAA 57.842 45.000 0.00 0.00 0.00 4.08
3874 5800 2.066262 AGCAATACGAACGGTCAACTG 58.934 47.619 0.00 0.00 0.00 3.16
3882 6252 4.092821 TCATCAAGGAAAGCAATACGAACG 59.907 41.667 0.00 0.00 0.00 3.95
3948 6319 6.115446 TGACCATTTATTCTGCCTAACTCTG 58.885 40.000 0.00 0.00 0.00 3.35
3987 6369 7.813087 AATTCCCCACCAGAAATAGAAAATT 57.187 32.000 0.00 0.00 0.00 1.82
3988 6370 7.813087 AAATTCCCCACCAGAAATAGAAAAT 57.187 32.000 0.00 0.00 0.00 1.82
3989 6371 7.625498 AAAATTCCCCACCAGAAATAGAAAA 57.375 32.000 0.00 0.00 0.00 2.29
3990 6372 7.512402 AGAAAAATTCCCCACCAGAAATAGAAA 59.488 33.333 0.00 0.00 0.00 2.52
3991 6373 7.016296 AGAAAAATTCCCCACCAGAAATAGAA 58.984 34.615 0.00 0.00 0.00 2.10
3992 6374 6.561294 AGAAAAATTCCCCACCAGAAATAGA 58.439 36.000 0.00 0.00 0.00 1.98
3993 6375 6.857437 AGAAAAATTCCCCACCAGAAATAG 57.143 37.500 0.00 0.00 0.00 1.73
3994 6376 6.013812 CCAAGAAAAATTCCCCACCAGAAATA 60.014 38.462 0.00 0.00 0.00 1.40
3995 6377 5.221904 CCAAGAAAAATTCCCCACCAGAAAT 60.222 40.000 0.00 0.00 0.00 2.17
3996 6378 4.102367 CCAAGAAAAATTCCCCACCAGAAA 59.898 41.667 0.00 0.00 0.00 2.52
3997 6379 3.645687 CCAAGAAAAATTCCCCACCAGAA 59.354 43.478 0.00 0.00 0.00 3.02
3998 6380 3.238597 CCAAGAAAAATTCCCCACCAGA 58.761 45.455 0.00 0.00 0.00 3.86
3999 6381 2.972021 ACCAAGAAAAATTCCCCACCAG 59.028 45.455 0.00 0.00 0.00 4.00
4000 6382 3.053359 ACCAAGAAAAATTCCCCACCA 57.947 42.857 0.00 0.00 0.00 4.17
4001 6383 5.554437 TTAACCAAGAAAAATTCCCCACC 57.446 39.130 0.00 0.00 0.00 4.61
4002 6384 6.995686 ACATTTAACCAAGAAAAATTCCCCAC 59.004 34.615 0.00 0.00 0.00 4.61
4003 6385 7.142995 ACATTTAACCAAGAAAAATTCCCCA 57.857 32.000 0.00 0.00 0.00 4.96
4004 6386 6.653320 GGACATTTAACCAAGAAAAATTCCCC 59.347 38.462 0.00 0.00 0.00 4.81
4005 6387 6.653320 GGGACATTTAACCAAGAAAAATTCCC 59.347 38.462 0.00 0.00 35.39 3.97
4006 6388 7.450074 AGGGACATTTAACCAAGAAAAATTCC 58.550 34.615 0.00 0.00 0.00 3.01
4018 6400 6.605471 ATGGAAAGAAAGGGACATTTAACC 57.395 37.500 0.00 0.00 0.00 2.85
4182 6580 3.268034 AAAGAGGAGAGGGAGAACAGT 57.732 47.619 0.00 0.00 0.00 3.55
4185 6583 2.767394 GGGTAAAGAGGAGAGGGAGAAC 59.233 54.545 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.