Multiple sequence alignment - TraesCS7B01G373700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G373700 chr7B 100.000 3189 0 0 1 3189 639365320 639362132 0.000000e+00 5890.0
1 TraesCS7B01G373700 chr7B 81.671 1544 247 22 1020 2541 639515672 639514143 0.000000e+00 1251.0
2 TraesCS7B01G373700 chr7B 80.548 365 43 11 2803 3162 639488079 639488420 4.080000e-64 255.0
3 TraesCS7B01G373700 chr7D 94.562 1600 75 8 1234 2827 576674548 576672955 0.000000e+00 2462.0
4 TraesCS7B01G373700 chr7D 85.187 2491 230 69 463 2882 576749572 576751994 0.000000e+00 2427.0
5 TraesCS7B01G373700 chr7D 87.903 372 20 12 2823 3189 576663450 576663099 6.360000e-112 414.0
6 TraesCS7B01G373700 chr7D 83.621 348 38 7 1 342 62679340 62679006 3.090000e-80 309.0
7 TraesCS7B01G373700 chr7D 89.888 178 10 4 360 537 576674920 576674751 4.140000e-54 222.0
8 TraesCS7B01G373700 chr7D 100.000 29 0 0 394 422 576749529 576749557 2.000000e-03 54.7
9 TraesCS7B01G373700 chr7A 92.308 1404 81 12 854 2251 668099638 668098256 0.000000e+00 1969.0
10 TraesCS7B01G373700 chr7A 88.719 1569 132 20 855 2416 668257468 668255938 0.000000e+00 1875.0
11 TraesCS7B01G373700 chr7A 90.785 955 57 7 2244 3189 668098090 668097158 0.000000e+00 1247.0
12 TraesCS7B01G373700 chr7A 85.688 1090 126 18 1472 2542 668770258 668769180 0.000000e+00 1122.0
13 TraesCS7B01G373700 chr7A 78.440 436 88 3 1750 2182 668250767 668251199 2.420000e-71 279.0
14 TraesCS7B01G373700 chr2B 95.614 342 15 0 1 342 43639403 43639062 1.670000e-152 549.0
15 TraesCS7B01G373700 chr3D 93.860 342 21 0 1 342 287336728 287337069 1.700000e-142 516.0
16 TraesCS7B01G373700 chr2D 83.673 343 54 2 1 342 288685193 288685534 3.970000e-84 322.0
17 TraesCS7B01G373700 chr3A 85.932 263 31 5 1 260 449119467 449119726 3.130000e-70 276.0
18 TraesCS7B01G373700 chr4B 86.111 216 20 2 1 210 338433084 338433295 1.150000e-54 224.0
19 TraesCS7B01G373700 chr1B 95.327 107 5 0 89 195 628309872 628309978 1.520000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G373700 chr7B 639362132 639365320 3188 True 5890.00 5890 100.0000 1 3189 1 chr7B.!!$R1 3188
1 TraesCS7B01G373700 chr7B 639514143 639515672 1529 True 1251.00 1251 81.6710 1020 2541 1 chr7B.!!$R2 1521
2 TraesCS7B01G373700 chr7D 576672955 576674920 1965 True 1342.00 2462 92.2250 360 2827 2 chr7D.!!$R3 2467
3 TraesCS7B01G373700 chr7D 576749529 576751994 2465 False 1240.85 2427 92.5935 394 2882 2 chr7D.!!$F1 2488
4 TraesCS7B01G373700 chr7A 668255938 668257468 1530 True 1875.00 1875 88.7190 855 2416 1 chr7A.!!$R1 1561
5 TraesCS7B01G373700 chr7A 668097158 668099638 2480 True 1608.00 1969 91.5465 854 3189 2 chr7A.!!$R3 2335
6 TraesCS7B01G373700 chr7A 668769180 668770258 1078 True 1122.00 1122 85.6880 1472 2542 1 chr7A.!!$R2 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.037326 TTAGCTGCACCCTTCGAGTG 60.037 55.0 1.02 0.00 38.30 3.51 F
347 348 0.179006 GAGTGGATCCCCTGCAATCC 60.179 60.0 9.90 8.02 41.60 3.01 F
559 560 0.250234 CCAGAGTTCATCTTGCCGGA 59.750 55.0 5.05 0.00 35.47 5.14 F
561 562 0.250513 AGAGTTCATCTTGCCGGACC 59.749 55.0 5.05 0.00 32.99 4.46 F
562 563 0.744771 GAGTTCATCTTGCCGGACCC 60.745 60.0 5.05 0.00 0.00 4.46 F
995 1038 0.788391 CCCACGCAGAAACGTTAGAC 59.212 55.0 0.00 0.00 45.75 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1579 0.392193 CTCGTGCTGGCAAATCCTCT 60.392 55.000 0.00 0.0 35.26 3.69 R
1648 1711 1.446907 CAGCGAAAGACTTGCCAGAT 58.553 50.000 0.00 0.0 0.00 2.90 R
1651 1714 1.525765 TGCAGCGAAAGACTTGCCA 60.526 52.632 0.00 0.0 0.00 4.92 R
1833 1898 3.709633 TGACCGCCTCATGCTGCT 61.710 61.111 0.00 0.0 38.05 4.24 R
1852 1917 4.142403 GCAAGTAAATGCTGAGCCAACATA 60.142 41.667 0.23 0.0 43.06 2.29 R
2573 2855 1.202651 ACTTTCCTGACACTGTTCCGG 60.203 52.381 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.841915 TCAAAAGAAAATTTTTGGTCACTCC 57.158 32.000 4.63 0.00 44.34 3.85
26 27 6.821160 TCAAAAGAAAATTTTTGGTCACTCCC 59.179 34.615 4.63 0.00 44.34 4.30
27 28 6.560003 AAAGAAAATTTTTGGTCACTCCCT 57.440 33.333 4.63 0.00 34.77 4.20
28 29 5.535753 AGAAAATTTTTGGTCACTCCCTG 57.464 39.130 4.63 0.00 34.77 4.45
29 30 4.962362 AGAAAATTTTTGGTCACTCCCTGT 59.038 37.500 4.63 0.00 34.77 4.00
30 31 5.425217 AGAAAATTTTTGGTCACTCCCTGTT 59.575 36.000 4.63 0.00 34.77 3.16
31 32 4.670896 AATTTTTGGTCACTCCCTGTTG 57.329 40.909 0.00 0.00 34.77 3.33
32 33 2.065899 TTTTGGTCACTCCCTGTTGG 57.934 50.000 0.00 0.00 34.77 3.77
33 34 0.923358 TTTGGTCACTCCCTGTTGGT 59.077 50.000 0.00 0.00 34.77 3.67
34 35 0.182537 TTGGTCACTCCCTGTTGGTG 59.817 55.000 0.00 0.00 34.77 4.17
35 36 1.073199 GGTCACTCCCTGTTGGTGG 59.927 63.158 0.00 0.00 34.77 4.61
36 37 1.415672 GGTCACTCCCTGTTGGTGGA 61.416 60.000 0.00 0.00 34.77 4.02
39 40 2.352805 CTCCCTGTTGGTGGAGCC 59.647 66.667 0.00 0.00 41.59 4.70
40 41 3.256960 TCCCTGTTGGTGGAGCCC 61.257 66.667 0.00 0.00 36.04 5.19
41 42 4.366684 CCCTGTTGGTGGAGCCCC 62.367 72.222 0.00 0.00 36.04 5.80
42 43 3.579302 CCTGTTGGTGGAGCCCCA 61.579 66.667 0.00 0.00 40.95 4.96
43 44 2.520458 CTGTTGGTGGAGCCCCAA 59.480 61.111 0.00 5.65 45.59 4.12
44 45 1.152567 CTGTTGGTGGAGCCCCAAA 60.153 57.895 9.95 0.00 45.59 3.28
45 46 0.758685 CTGTTGGTGGAGCCCCAAAA 60.759 55.000 9.95 5.60 45.59 2.44
46 47 0.758685 TGTTGGTGGAGCCCCAAAAG 60.759 55.000 9.95 0.00 45.59 2.27
47 48 1.152355 TTGGTGGAGCCCCAAAAGG 60.152 57.895 0.00 0.00 45.59 3.11
48 49 1.660019 TTGGTGGAGCCCCAAAAGGA 61.660 55.000 0.00 0.00 45.59 3.36
49 50 1.388133 GGTGGAGCCCCAAAAGGAT 59.612 57.895 0.00 0.00 45.59 3.24
50 51 0.252239 GGTGGAGCCCCAAAAGGATT 60.252 55.000 0.00 0.00 45.59 3.01
51 52 1.006639 GGTGGAGCCCCAAAAGGATTA 59.993 52.381 0.00 0.00 45.59 1.75
52 53 2.100197 GTGGAGCCCCAAAAGGATTAC 58.900 52.381 0.00 0.00 45.59 1.89
53 54 1.006639 TGGAGCCCCAAAAGGATTACC 59.993 52.381 0.00 0.00 40.09 2.85
54 55 1.688311 GGAGCCCCAAAAGGATTACCC 60.688 57.143 0.00 0.00 38.24 3.69
55 56 0.338467 AGCCCCAAAAGGATTACCCC 59.662 55.000 0.00 0.00 38.24 4.95
56 57 0.338467 GCCCCAAAAGGATTACCCCT 59.662 55.000 0.00 0.00 38.24 4.79
57 58 1.688311 GCCCCAAAAGGATTACCCCTC 60.688 57.143 0.00 0.00 38.24 4.30
58 59 1.930204 CCCCAAAAGGATTACCCCTCT 59.070 52.381 0.00 0.00 38.24 3.69
59 60 2.314852 CCCCAAAAGGATTACCCCTCTT 59.685 50.000 0.00 0.00 38.24 2.85
60 61 3.245984 CCCCAAAAGGATTACCCCTCTTT 60.246 47.826 0.00 0.00 38.24 2.52
61 62 4.425772 CCCAAAAGGATTACCCCTCTTTT 58.574 43.478 0.00 0.00 39.22 2.27
62 63 4.844085 CCCAAAAGGATTACCCCTCTTTTT 59.156 41.667 0.00 0.00 37.34 1.94
83 84 3.802948 TCCTATGACCTCTTTTCGAGC 57.197 47.619 0.00 0.00 38.49 5.03
84 85 3.096852 TCCTATGACCTCTTTTCGAGCA 58.903 45.455 0.00 0.00 38.49 4.26
85 86 3.119101 TCCTATGACCTCTTTTCGAGCAC 60.119 47.826 0.00 0.00 38.49 4.40
86 87 3.118956 CCTATGACCTCTTTTCGAGCACT 60.119 47.826 0.00 0.00 38.49 4.40
87 88 2.440539 TGACCTCTTTTCGAGCACTC 57.559 50.000 0.00 0.00 38.49 3.51
88 89 1.964223 TGACCTCTTTTCGAGCACTCT 59.036 47.619 0.00 0.00 38.49 3.24
89 90 2.029828 TGACCTCTTTTCGAGCACTCTC 60.030 50.000 0.00 0.00 38.49 3.20
90 91 1.964223 ACCTCTTTTCGAGCACTCTCA 59.036 47.619 0.00 0.00 39.30 3.27
91 92 2.365617 ACCTCTTTTCGAGCACTCTCAA 59.634 45.455 0.00 0.00 39.30 3.02
92 93 2.734079 CCTCTTTTCGAGCACTCTCAAC 59.266 50.000 0.00 0.00 39.30 3.18
93 94 3.553922 CCTCTTTTCGAGCACTCTCAACT 60.554 47.826 0.00 0.00 39.30 3.16
94 95 4.054671 CTCTTTTCGAGCACTCTCAACTT 58.945 43.478 0.00 0.00 39.30 2.66
95 96 4.442706 TCTTTTCGAGCACTCTCAACTTT 58.557 39.130 0.00 0.00 39.30 2.66
96 97 4.508124 TCTTTTCGAGCACTCTCAACTTTC 59.492 41.667 0.00 0.00 39.30 2.62
97 98 3.735237 TTCGAGCACTCTCAACTTTCT 57.265 42.857 0.00 0.00 39.30 2.52
98 99 3.290308 TCGAGCACTCTCAACTTTCTC 57.710 47.619 0.00 0.00 39.30 2.87
99 100 2.623416 TCGAGCACTCTCAACTTTCTCA 59.377 45.455 0.00 0.00 39.30 3.27
100 101 3.256879 TCGAGCACTCTCAACTTTCTCAT 59.743 43.478 0.00 0.00 39.30 2.90
101 102 3.611986 CGAGCACTCTCAACTTTCTCATC 59.388 47.826 0.00 0.00 39.30 2.92
102 103 3.932089 GAGCACTCTCAACTTTCTCATCC 59.068 47.826 0.00 0.00 39.16 3.51
103 104 3.006247 GCACTCTCAACTTTCTCATCCC 58.994 50.000 0.00 0.00 0.00 3.85
104 105 3.604582 CACTCTCAACTTTCTCATCCCC 58.395 50.000 0.00 0.00 0.00 4.81
105 106 3.262915 CACTCTCAACTTTCTCATCCCCT 59.737 47.826 0.00 0.00 0.00 4.79
106 107 3.517500 ACTCTCAACTTTCTCATCCCCTC 59.482 47.826 0.00 0.00 0.00 4.30
107 108 2.840651 TCTCAACTTTCTCATCCCCTCC 59.159 50.000 0.00 0.00 0.00 4.30
108 109 1.916181 TCAACTTTCTCATCCCCTCCC 59.084 52.381 0.00 0.00 0.00 4.30
109 110 1.918957 CAACTTTCTCATCCCCTCCCT 59.081 52.381 0.00 0.00 0.00 4.20
110 111 2.310052 CAACTTTCTCATCCCCTCCCTT 59.690 50.000 0.00 0.00 0.00 3.95
111 112 2.200955 ACTTTCTCATCCCCTCCCTTC 58.799 52.381 0.00 0.00 0.00 3.46
112 113 2.226013 ACTTTCTCATCCCCTCCCTTCT 60.226 50.000 0.00 0.00 0.00 2.85
113 114 2.668850 TTCTCATCCCCTCCCTTCTT 57.331 50.000 0.00 0.00 0.00 2.52
114 115 2.668850 TCTCATCCCCTCCCTTCTTT 57.331 50.000 0.00 0.00 0.00 2.52
115 116 2.934722 TCTCATCCCCTCCCTTCTTTT 58.065 47.619 0.00 0.00 0.00 2.27
116 117 3.269034 TCTCATCCCCTCCCTTCTTTTT 58.731 45.455 0.00 0.00 0.00 1.94
117 118 4.444611 TCTCATCCCCTCCCTTCTTTTTA 58.555 43.478 0.00 0.00 0.00 1.52
118 119 4.227527 TCTCATCCCCTCCCTTCTTTTTAC 59.772 45.833 0.00 0.00 0.00 2.01
119 120 3.268595 TCATCCCCTCCCTTCTTTTTACC 59.731 47.826 0.00 0.00 0.00 2.85
120 121 3.013984 TCCCCTCCCTTCTTTTTACCT 57.986 47.619 0.00 0.00 0.00 3.08
121 122 3.342273 TCCCCTCCCTTCTTTTTACCTT 58.658 45.455 0.00 0.00 0.00 3.50
122 123 3.730594 TCCCCTCCCTTCTTTTTACCTTT 59.269 43.478 0.00 0.00 0.00 3.11
123 124 4.171243 TCCCCTCCCTTCTTTTTACCTTTT 59.829 41.667 0.00 0.00 0.00 2.27
124 125 4.527038 CCCCTCCCTTCTTTTTACCTTTTC 59.473 45.833 0.00 0.00 0.00 2.29
125 126 5.394738 CCCTCCCTTCTTTTTACCTTTTCT 58.605 41.667 0.00 0.00 0.00 2.52
126 127 5.477291 CCCTCCCTTCTTTTTACCTTTTCTC 59.523 44.000 0.00 0.00 0.00 2.87
127 128 6.307776 CCTCCCTTCTTTTTACCTTTTCTCT 58.692 40.000 0.00 0.00 0.00 3.10
128 129 6.431543 CCTCCCTTCTTTTTACCTTTTCTCTC 59.568 42.308 0.00 0.00 0.00 3.20
129 130 6.304624 TCCCTTCTTTTTACCTTTTCTCTCC 58.695 40.000 0.00 0.00 0.00 3.71
130 131 6.102762 TCCCTTCTTTTTACCTTTTCTCTCCT 59.897 38.462 0.00 0.00 0.00 3.69
131 132 6.778069 CCCTTCTTTTTACCTTTTCTCTCCTT 59.222 38.462 0.00 0.00 0.00 3.36
132 133 7.287927 CCCTTCTTTTTACCTTTTCTCTCCTTT 59.712 37.037 0.00 0.00 0.00 3.11
133 134 8.696374 CCTTCTTTTTACCTTTTCTCTCCTTTT 58.304 33.333 0.00 0.00 0.00 2.27
151 152 4.040645 TTTTTGTGTGGCCCTGCA 57.959 50.000 0.00 0.00 0.00 4.41
152 153 2.525784 TTTTTGTGTGGCCCTGCAT 58.474 47.368 0.00 0.00 0.00 3.96
153 154 1.709578 TTTTTGTGTGGCCCTGCATA 58.290 45.000 0.00 0.00 0.00 3.14
154 155 1.255882 TTTTGTGTGGCCCTGCATAG 58.744 50.000 0.00 0.00 0.00 2.23
155 156 0.611618 TTTGTGTGGCCCTGCATAGG 60.612 55.000 0.00 0.00 44.18 2.57
170 171 6.690194 CTGCATAGGATTCTTTTTAGCAGT 57.310 37.500 0.00 0.00 41.31 4.40
171 172 7.792374 CTGCATAGGATTCTTTTTAGCAGTA 57.208 36.000 0.00 0.00 41.31 2.74
172 173 8.213518 CTGCATAGGATTCTTTTTAGCAGTAA 57.786 34.615 0.00 0.00 41.31 2.24
173 174 8.574251 TGCATAGGATTCTTTTTAGCAGTAAA 57.426 30.769 0.00 0.00 0.00 2.01
174 175 9.019656 TGCATAGGATTCTTTTTAGCAGTAAAA 57.980 29.630 0.00 0.00 36.52 1.52
175 176 9.508567 GCATAGGATTCTTTTTAGCAGTAAAAG 57.491 33.333 10.11 10.11 38.93 2.27
185 186 9.447040 CTTTTTAGCAGTAAAAGTAAACACTCC 57.553 33.333 8.80 0.00 38.93 3.85
186 187 8.508883 TTTTAGCAGTAAAAGTAAACACTCCA 57.491 30.769 0.00 0.00 33.93 3.86
187 188 7.724305 TTAGCAGTAAAAGTAAACACTCCAG 57.276 36.000 0.00 0.00 0.00 3.86
188 189 5.925509 AGCAGTAAAAGTAAACACTCCAGA 58.074 37.500 0.00 0.00 0.00 3.86
189 190 5.758784 AGCAGTAAAAGTAAACACTCCAGAC 59.241 40.000 0.00 0.00 0.00 3.51
190 191 5.758784 GCAGTAAAAGTAAACACTCCAGACT 59.241 40.000 0.00 0.00 0.00 3.24
191 192 6.073711 GCAGTAAAAGTAAACACTCCAGACTC 60.074 42.308 0.00 0.00 0.00 3.36
192 193 6.424207 CAGTAAAAGTAAACACTCCAGACTCC 59.576 42.308 0.00 0.00 0.00 3.85
193 194 5.367945 AAAAGTAAACACTCCAGACTCCA 57.632 39.130 0.00 0.00 0.00 3.86
194 195 5.568620 AAAGTAAACACTCCAGACTCCAT 57.431 39.130 0.00 0.00 0.00 3.41
195 196 4.543590 AGTAAACACTCCAGACTCCATG 57.456 45.455 0.00 0.00 0.00 3.66
196 197 2.867109 AAACACTCCAGACTCCATGG 57.133 50.000 4.97 4.97 39.33 3.66
197 198 0.326264 AACACTCCAGACTCCATGGC 59.674 55.000 6.96 0.00 37.76 4.40
198 199 1.222936 CACTCCAGACTCCATGGCC 59.777 63.158 6.96 0.00 37.76 5.36
199 200 2.362369 ACTCCAGACTCCATGGCCG 61.362 63.158 6.96 2.80 37.76 6.13
200 201 2.284625 TCCAGACTCCATGGCCGT 60.285 61.111 6.96 6.54 37.76 5.68
201 202 1.001120 TCCAGACTCCATGGCCGTA 59.999 57.895 6.96 0.00 37.76 4.02
202 203 1.043116 TCCAGACTCCATGGCCGTAG 61.043 60.000 6.96 1.07 37.76 3.51
203 204 1.227380 CAGACTCCATGGCCGTAGC 60.227 63.158 6.96 0.00 38.76 3.58
204 205 1.381872 AGACTCCATGGCCGTAGCT 60.382 57.895 6.96 0.00 39.73 3.32
205 206 1.227380 GACTCCATGGCCGTAGCTG 60.227 63.158 6.96 0.00 39.73 4.24
206 207 2.109799 CTCCATGGCCGTAGCTGG 59.890 66.667 6.96 0.00 39.73 4.85
207 208 3.466791 CTCCATGGCCGTAGCTGGG 62.467 68.421 6.96 0.00 35.51 4.45
224 225 2.355718 GCTAGCTAGCCTCGCAGC 60.356 66.667 31.67 9.83 43.39 5.25
225 226 2.338257 CTAGCTAGCCTCGCAGCC 59.662 66.667 12.13 0.00 34.83 4.85
226 227 2.442087 TAGCTAGCCTCGCAGCCA 60.442 61.111 12.13 0.00 34.83 4.75
227 228 2.691674 CTAGCTAGCCTCGCAGCCAC 62.692 65.000 12.13 0.00 34.83 5.01
228 229 4.457496 GCTAGCCTCGCAGCCACA 62.457 66.667 2.29 0.00 30.64 4.17
229 230 2.202851 CTAGCCTCGCAGCCACAG 60.203 66.667 0.00 0.00 0.00 3.66
230 231 4.457496 TAGCCTCGCAGCCACAGC 62.457 66.667 0.00 0.00 40.32 4.40
259 260 3.655211 CCTCAAGCACCCCAGGCT 61.655 66.667 0.00 0.00 45.15 4.58
260 261 2.045536 CTCAAGCACCCCAGGCTC 60.046 66.667 0.00 0.00 41.66 4.70
261 262 2.853542 TCAAGCACCCCAGGCTCA 60.854 61.111 0.00 0.00 41.66 4.26
262 263 2.115910 CAAGCACCCCAGGCTCAA 59.884 61.111 0.00 0.00 41.66 3.02
263 264 1.531365 CAAGCACCCCAGGCTCAAA 60.531 57.895 0.00 0.00 41.66 2.69
264 265 0.901580 CAAGCACCCCAGGCTCAAAT 60.902 55.000 0.00 0.00 41.66 2.32
265 266 0.704076 AAGCACCCCAGGCTCAAATA 59.296 50.000 0.00 0.00 41.66 1.40
266 267 0.704076 AGCACCCCAGGCTCAAATAA 59.296 50.000 0.00 0.00 36.81 1.40
267 268 1.077005 AGCACCCCAGGCTCAAATAAA 59.923 47.619 0.00 0.00 36.81 1.40
268 269 1.899142 GCACCCCAGGCTCAAATAAAA 59.101 47.619 0.00 0.00 0.00 1.52
269 270 2.353704 GCACCCCAGGCTCAAATAAAAC 60.354 50.000 0.00 0.00 0.00 2.43
270 271 2.233676 CACCCCAGGCTCAAATAAAACC 59.766 50.000 0.00 0.00 0.00 3.27
271 272 2.111792 ACCCCAGGCTCAAATAAAACCT 59.888 45.455 0.00 0.00 0.00 3.50
272 273 2.497273 CCCCAGGCTCAAATAAAACCTG 59.503 50.000 0.00 0.00 46.10 4.00
279 280 6.809869 AGGCTCAAATAAAACCTGATTATGC 58.190 36.000 0.00 0.00 0.00 3.14
280 281 5.687285 GGCTCAAATAAAACCTGATTATGCG 59.313 40.000 0.00 0.00 0.00 4.73
281 282 6.265577 GCTCAAATAAAACCTGATTATGCGT 58.734 36.000 0.00 0.00 0.00 5.24
282 283 6.197096 GCTCAAATAAAACCTGATTATGCGTG 59.803 38.462 0.00 0.00 0.00 5.34
283 284 7.151999 TCAAATAAAACCTGATTATGCGTGT 57.848 32.000 0.00 0.00 0.00 4.49
284 285 7.598278 TCAAATAAAACCTGATTATGCGTGTT 58.402 30.769 0.00 0.00 0.00 3.32
285 286 8.731605 TCAAATAAAACCTGATTATGCGTGTTA 58.268 29.630 0.00 0.00 0.00 2.41
286 287 9.347934 CAAATAAAACCTGATTATGCGTGTTAA 57.652 29.630 0.00 0.00 0.00 2.01
287 288 9.915629 AAATAAAACCTGATTATGCGTGTTAAA 57.084 25.926 0.00 0.00 0.00 1.52
289 290 7.810766 AAAACCTGATTATGCGTGTTAAATG 57.189 32.000 0.00 0.00 0.00 2.32
290 291 6.509418 AACCTGATTATGCGTGTTAAATGT 57.491 33.333 0.00 0.00 0.00 2.71
291 292 5.879237 ACCTGATTATGCGTGTTAAATGTG 58.121 37.500 0.00 0.00 0.00 3.21
292 293 5.163663 ACCTGATTATGCGTGTTAAATGTGG 60.164 40.000 0.00 0.00 0.00 4.17
293 294 4.667262 TGATTATGCGTGTTAAATGTGGC 58.333 39.130 0.00 0.00 0.00 5.01
294 295 4.156739 TGATTATGCGTGTTAAATGTGGCA 59.843 37.500 0.00 0.00 34.60 4.92
295 296 2.634982 ATGCGTGTTAAATGTGGCAG 57.365 45.000 0.00 0.00 33.48 4.85
296 297 0.039617 TGCGTGTTAAATGTGGCAGC 60.040 50.000 0.00 0.00 0.00 5.25
297 298 0.732538 GCGTGTTAAATGTGGCAGCC 60.733 55.000 3.66 3.66 0.00 4.85
298 299 0.454285 CGTGTTAAATGTGGCAGCCG 60.454 55.000 7.03 0.00 0.00 5.52
299 300 0.732538 GTGTTAAATGTGGCAGCCGC 60.733 55.000 18.93 18.93 37.44 6.53
305 306 4.019312 TGTGGCAGCCGCATCAGA 62.019 61.111 24.46 0.00 39.28 3.27
306 307 2.747460 GTGGCAGCCGCATCAGAA 60.747 61.111 20.81 0.00 41.24 3.02
307 308 2.033911 TGGCAGCCGCATCAGAAA 59.966 55.556 7.03 0.00 41.24 2.52
308 309 2.334946 TGGCAGCCGCATCAGAAAC 61.335 57.895 7.03 0.00 41.24 2.78
309 310 2.099062 GCAGCCGCATCAGAAACG 59.901 61.111 0.00 0.00 38.36 3.60
313 314 3.501396 CCGCATCAGAAACGGCAT 58.499 55.556 1.79 0.00 40.55 4.40
314 315 1.802636 CCGCATCAGAAACGGCATT 59.197 52.632 1.79 0.00 40.55 3.56
315 316 1.013596 CCGCATCAGAAACGGCATTA 58.986 50.000 1.79 0.00 40.55 1.90
316 317 1.003545 CCGCATCAGAAACGGCATTAG 60.004 52.381 1.79 0.00 40.55 1.73
317 318 1.595489 CGCATCAGAAACGGCATTAGC 60.595 52.381 0.00 0.00 41.10 3.09
318 319 1.672881 GCATCAGAAACGGCATTAGCT 59.327 47.619 0.00 0.00 41.70 3.32
329 330 3.458872 CATTAGCTGCACCCTTCGA 57.541 52.632 1.02 0.00 0.00 3.71
330 331 1.293924 CATTAGCTGCACCCTTCGAG 58.706 55.000 1.02 0.00 0.00 4.04
331 332 0.905357 ATTAGCTGCACCCTTCGAGT 59.095 50.000 1.02 0.00 0.00 4.18
332 333 0.037326 TTAGCTGCACCCTTCGAGTG 60.037 55.000 1.02 0.00 38.30 3.51
333 334 1.888436 TAGCTGCACCCTTCGAGTGG 61.888 60.000 1.02 3.38 35.71 4.00
334 335 3.059982 CTGCACCCTTCGAGTGGA 58.940 61.111 9.09 3.56 35.71 4.02
335 336 1.599047 CTGCACCCTTCGAGTGGAT 59.401 57.895 9.09 0.00 34.89 3.41
336 337 0.460987 CTGCACCCTTCGAGTGGATC 60.461 60.000 9.09 0.00 34.89 3.36
337 338 1.153349 GCACCCTTCGAGTGGATCC 60.153 63.158 4.20 4.20 35.71 3.36
338 339 1.522569 CACCCTTCGAGTGGATCCC 59.477 63.158 9.90 0.11 0.00 3.85
339 340 1.689582 ACCCTTCGAGTGGATCCCC 60.690 63.158 9.90 0.00 0.00 4.81
340 341 1.383248 CCCTTCGAGTGGATCCCCT 60.383 63.158 9.90 1.68 0.00 4.79
341 342 1.690219 CCCTTCGAGTGGATCCCCTG 61.690 65.000 9.90 0.00 0.00 4.45
342 343 1.144936 CTTCGAGTGGATCCCCTGC 59.855 63.158 9.90 0.00 0.00 4.85
343 344 1.612146 TTCGAGTGGATCCCCTGCA 60.612 57.895 9.90 0.00 0.00 4.41
344 345 1.198094 TTCGAGTGGATCCCCTGCAA 61.198 55.000 9.90 0.00 0.00 4.08
345 346 0.982852 TCGAGTGGATCCCCTGCAAT 60.983 55.000 9.90 0.00 0.00 3.56
346 347 0.533755 CGAGTGGATCCCCTGCAATC 60.534 60.000 9.90 0.00 37.00 2.67
347 348 0.179006 GAGTGGATCCCCTGCAATCC 60.179 60.000 9.90 8.02 41.60 3.01
348 349 1.152673 GTGGATCCCCTGCAATCCC 60.153 63.158 9.90 1.48 40.70 3.85
349 350 2.394506 TGGATCCCCTGCAATCCCC 61.395 63.158 9.90 0.00 40.70 4.81
350 351 2.087461 GGATCCCCTGCAATCCCCT 61.087 63.158 0.00 0.00 36.26 4.79
351 352 1.152368 GATCCCCTGCAATCCCCTG 59.848 63.158 0.00 0.00 0.00 4.45
352 353 2.363292 GATCCCCTGCAATCCCCTGG 62.363 65.000 0.00 0.00 0.00 4.45
353 354 4.847367 CCCCTGCAATCCCCTGGC 62.847 72.222 0.00 0.00 0.00 4.85
354 355 4.847367 CCCTGCAATCCCCTGGCC 62.847 72.222 0.00 0.00 0.00 5.36
355 356 4.847367 CCTGCAATCCCCTGGCCC 62.847 72.222 0.00 0.00 0.00 5.80
356 357 3.747579 CTGCAATCCCCTGGCCCT 61.748 66.667 0.00 0.00 0.00 5.19
357 358 3.728292 CTGCAATCCCCTGGCCCTC 62.728 68.421 0.00 0.00 0.00 4.30
358 359 4.529731 GCAATCCCCTGGCCCTCC 62.530 72.222 0.00 0.00 0.00 4.30
380 381 3.419793 CCTGGTGTGGCTTTGAAGA 57.580 52.632 0.00 0.00 0.00 2.87
381 382 0.954452 CCTGGTGTGGCTTTGAAGAC 59.046 55.000 0.00 0.00 33.51 3.01
422 423 4.274459 TCCGACTAGAATAAGGTTACTCGC 59.726 45.833 0.00 0.00 0.00 5.03
423 424 4.275443 CCGACTAGAATAAGGTTACTCGCT 59.725 45.833 0.00 0.00 0.00 4.93
424 425 5.442402 CGACTAGAATAAGGTTACTCGCTC 58.558 45.833 0.00 0.00 0.00 5.03
425 426 5.421212 ACTAGAATAAGGTTACTCGCTCG 57.579 43.478 0.00 0.00 0.00 5.03
447 448 1.125566 GCGCTGCAGAATTTTCTTTGC 59.874 47.619 20.43 0.00 34.74 3.68
450 451 3.645884 GCTGCAGAATTTTCTTTGCTGA 58.354 40.909 20.43 0.00 34.74 4.26
459 460 8.433126 CAGAATTTTCTTTGCTGATGATGAAAC 58.567 33.333 0.00 0.00 34.74 2.78
504 505 5.223449 TCCTTAGTCATTTTTCCACTCGT 57.777 39.130 0.00 0.00 0.00 4.18
551 552 2.892425 CCGCGGCCAGAGTTCATC 60.892 66.667 14.67 0.00 0.00 2.92
552 553 2.185350 CGCGGCCAGAGTTCATCT 59.815 61.111 2.24 0.00 39.56 2.90
553 554 1.448540 CGCGGCCAGAGTTCATCTT 60.449 57.895 2.24 0.00 35.47 2.40
554 555 1.699656 CGCGGCCAGAGTTCATCTTG 61.700 60.000 2.24 0.00 35.47 3.02
555 556 1.986575 GCGGCCAGAGTTCATCTTGC 61.987 60.000 2.24 0.00 44.19 4.01
557 558 2.093216 GCCAGAGTTCATCTTGCCG 58.907 57.895 0.00 0.00 40.11 5.69
558 559 1.372087 GCCAGAGTTCATCTTGCCGG 61.372 60.000 0.00 0.00 40.11 6.13
559 560 0.250234 CCAGAGTTCATCTTGCCGGA 59.750 55.000 5.05 0.00 35.47 5.14
560 561 1.363744 CAGAGTTCATCTTGCCGGAC 58.636 55.000 5.05 0.00 35.47 4.79
561 562 0.250513 AGAGTTCATCTTGCCGGACC 59.749 55.000 5.05 0.00 32.99 4.46
562 563 0.744771 GAGTTCATCTTGCCGGACCC 60.745 60.000 5.05 0.00 0.00 4.46
596 608 1.990060 CTTCTCCCTCCCTCGCCAA 60.990 63.158 0.00 0.00 0.00 4.52
602 614 1.450312 CCTCCCTCGCCAACATCAC 60.450 63.158 0.00 0.00 0.00 3.06
611 623 0.890683 GCCAACATCACCTTTCCCTG 59.109 55.000 0.00 0.00 0.00 4.45
752 790 2.469516 CCAAATCAGGCCGCCGTAC 61.470 63.158 3.05 0.00 0.00 3.67
833 871 1.671379 GTTGTCTTCACCGCCTCCC 60.671 63.158 0.00 0.00 0.00 4.30
873 916 1.615165 GGGACCCTTCTTCTCCGGTC 61.615 65.000 2.09 0.00 43.42 4.79
942 985 6.428083 TCTGGATCTTGTAAGTTGTAACCA 57.572 37.500 0.00 0.00 0.00 3.67
995 1038 0.788391 CCCACGCAGAAACGTTAGAC 59.212 55.000 0.00 0.00 45.75 2.59
1035 1079 1.277580 ACATTCCCCTCTGCTCCCTG 61.278 60.000 0.00 0.00 0.00 4.45
1037 1081 1.277580 ATTCCCCTCTGCTCCCTGTG 61.278 60.000 0.00 0.00 0.00 3.66
1081 1125 3.243234 CCAGCAAAAACGTCACCAATGTA 60.243 43.478 0.00 0.00 0.00 2.29
1132 1176 1.318576 GCTACTGTGCCACCAAAACT 58.681 50.000 0.00 0.00 0.00 2.66
1387 1438 3.992943 TTCAACCGTTCATGGGTATCT 57.007 42.857 0.00 0.00 36.57 1.98
1396 1447 4.113354 GTTCATGGGTATCTCGTTGTCTC 58.887 47.826 0.00 0.00 0.00 3.36
1417 1468 1.016130 AGATGTGCTCGCCTTTCGTG 61.016 55.000 0.00 0.00 39.67 4.35
1520 1571 1.629013 CGTGCTATGTGTCATCACGT 58.371 50.000 12.49 0.00 46.49 4.49
1528 1579 2.284190 TGTGTCATCACGTTGCTGAAA 58.716 42.857 0.00 0.00 46.49 2.69
1643 1706 1.811965 TGGAAGCGGATGTCACATTTG 59.188 47.619 0.00 0.00 0.00 2.32
1648 1711 3.407698 AGCGGATGTCACATTTGTTGTA 58.592 40.909 0.00 0.00 36.57 2.41
1651 1714 4.094887 GCGGATGTCACATTTGTTGTATCT 59.905 41.667 0.00 0.00 36.57 1.98
1833 1898 4.005650 GACTCTGTGCTGGAATTTGATCA 58.994 43.478 0.00 0.00 0.00 2.92
2134 2199 1.537814 TTCTTAAGTCTGCGCGGGGA 61.538 55.000 17.88 4.79 0.00 4.81
2188 2257 8.682710 GTGCTAATGGTCCAAGTTTTTATCATA 58.317 33.333 0.00 0.00 0.00 2.15
2257 2500 2.567615 ACCCTGTGTCTGTATTCACCTC 59.432 50.000 0.00 0.00 34.14 3.85
2260 2503 4.504864 CCCTGTGTCTGTATTCACCTCAAA 60.505 45.833 0.00 0.00 34.14 2.69
2269 2512 6.208599 TCTGTATTCACCTCAAATGGAAAACC 59.791 38.462 0.00 0.00 0.00 3.27
2289 2532 9.331282 GAAAACCTTATGCTCATCTACTTATGT 57.669 33.333 0.00 0.00 0.00 2.29
2319 2562 5.472148 TCAACTTATTGCTTGCATTTCCTG 58.528 37.500 0.00 0.00 35.63 3.86
2538 2802 9.360093 CAATTCTTGTGTTTGTTTTACCTTGTA 57.640 29.630 0.00 0.00 0.00 2.41
2539 2803 8.920509 ATTCTTGTGTTTGTTTTACCTTGTAC 57.079 30.769 0.00 0.00 0.00 2.90
2540 2804 7.690952 TCTTGTGTTTGTTTTACCTTGTACT 57.309 32.000 0.00 0.00 0.00 2.73
2573 2855 5.820131 TGAACACATTGTCACATCAACTTC 58.180 37.500 0.00 0.00 0.00 3.01
2582 2864 2.104111 TCACATCAACTTCCGGAACAGT 59.896 45.455 14.35 8.07 0.00 3.55
2592 2874 1.070134 TCCGGAACAGTGTCAGGAAAG 59.930 52.381 0.00 0.00 38.71 2.62
2607 2889 6.071334 TGTCAGGAAAGTAAGTACCATCTCAG 60.071 42.308 0.00 0.00 0.00 3.35
2669 2951 1.680338 AGAGCCAACAACTGAACCAC 58.320 50.000 0.00 0.00 0.00 4.16
2674 2956 2.938838 CCAACAACTGAACCACCCTAA 58.061 47.619 0.00 0.00 0.00 2.69
2686 2968 4.657814 ACCACCCTAATGTTCTTGATGT 57.342 40.909 0.00 0.00 0.00 3.06
2828 3134 7.915397 GTCTCTGTTTATGTTTGTCATGTTTGT 59.085 33.333 0.00 0.00 37.91 2.83
2835 3141 9.676195 TTTATGTTTGTCATGTTTGTATGTCTG 57.324 29.630 0.00 0.00 37.91 3.51
2839 3145 7.283354 TGTTTGTCATGTTTGTATGTCTGGTTA 59.717 33.333 0.00 0.00 0.00 2.85
2840 3146 7.994425 TTGTCATGTTTGTATGTCTGGTTAT 57.006 32.000 0.00 0.00 0.00 1.89
2841 3147 7.994425 TGTCATGTTTGTATGTCTGGTTATT 57.006 32.000 0.00 0.00 0.00 1.40
2866 3173 6.619801 ACTTGTGTTTTGTATCCTGTCTTC 57.380 37.500 0.00 0.00 0.00 2.87
2918 3225 5.171476 TCTCTGTTTCTGCTTACTATGCAC 58.829 41.667 0.00 0.00 36.37 4.57
2935 3242 8.207350 ACTATGCACCCATCTACAGTAATAAT 57.793 34.615 0.00 0.00 32.85 1.28
2951 3258 8.154856 ACAGTAATAATGTGTGTTTACCTCACT 58.845 33.333 0.00 0.00 36.83 3.41
2984 3291 1.266178 ATTTTACTGCCCTTGGTGCC 58.734 50.000 0.00 0.00 0.00 5.01
3000 3307 2.226330 GTGCCCAAACAGTGTGATGTA 58.774 47.619 0.00 0.00 31.70 2.29
3033 3340 8.296713 TGCTAAATGGTTCAAGATTTTGTCTAC 58.703 33.333 0.00 0.00 35.67 2.59
3040 3347 7.041167 TGGTTCAAGATTTTGTCTACTCATGTG 60.041 37.037 0.00 0.00 35.67 3.21
3044 3351 4.697352 AGATTTTGTCTACTCATGTGTGCC 59.303 41.667 10.62 0.00 34.69 5.01
3053 3360 0.250424 TCATGTGTGCCTGTCAGTGG 60.250 55.000 0.00 0.00 0.00 4.00
3077 3384 2.239654 CAAGGTGATACATGACCAGGGT 59.760 50.000 0.00 0.00 36.44 4.34
3084 3391 1.676635 CATGACCAGGGTGTGCAGG 60.677 63.158 0.00 0.00 0.00 4.85
3102 3409 3.869481 GCAGGGGTTGGCAAGAAA 58.131 55.556 0.00 0.00 0.00 2.52
3114 3421 5.279456 GGTTGGCAAGAAATAACACCTGAAT 60.279 40.000 0.00 0.00 0.00 2.57
3133 3440 1.959710 TGGTACTGGGGTCTGCATAA 58.040 50.000 0.00 0.00 0.00 1.90
3136 3443 2.158943 GGTACTGGGGTCTGCATAACTC 60.159 54.545 0.00 0.00 0.00 3.01
3138 3445 0.824109 CTGGGGTCTGCATAACTCGA 59.176 55.000 0.00 0.00 0.00 4.04
3147 3454 5.050091 GGTCTGCATAACTCGAATTGTATGG 60.050 44.000 0.00 0.00 0.00 2.74
3162 3469 1.093972 TATGGTTTGTGCAGCATCCG 58.906 50.000 0.00 0.00 36.32 4.18
3176 3483 1.888215 CATCCGGATTCATGGACTGG 58.112 55.000 16.19 0.00 37.02 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.821160 GGGAGTGACCAAAAATTTTCTTTTGA 59.179 34.615 3.41 0.00 45.25 2.69
2 3 6.823182 AGGGAGTGACCAAAAATTTTCTTTTG 59.177 34.615 3.41 0.00 43.11 2.44
3 4 6.823182 CAGGGAGTGACCAAAAATTTTCTTTT 59.177 34.615 3.41 0.00 41.20 2.27
4 5 6.070251 ACAGGGAGTGACCAAAAATTTTCTTT 60.070 34.615 3.41 0.00 41.20 2.52
5 6 5.425217 ACAGGGAGTGACCAAAAATTTTCTT 59.575 36.000 3.41 0.00 41.20 2.52
6 7 4.962362 ACAGGGAGTGACCAAAAATTTTCT 59.038 37.500 3.41 0.00 41.20 2.52
7 8 5.276461 ACAGGGAGTGACCAAAAATTTTC 57.724 39.130 3.41 0.00 41.20 2.29
8 9 5.427378 CAACAGGGAGTGACCAAAAATTTT 58.573 37.500 0.00 0.00 41.20 1.82
9 10 4.141733 CCAACAGGGAGTGACCAAAAATTT 60.142 41.667 0.00 0.00 40.01 1.82
10 11 3.387699 CCAACAGGGAGTGACCAAAAATT 59.612 43.478 0.00 0.00 40.01 1.82
11 12 2.965147 CCAACAGGGAGTGACCAAAAAT 59.035 45.455 0.00 0.00 40.01 1.82
12 13 2.291930 ACCAACAGGGAGTGACCAAAAA 60.292 45.455 0.00 0.00 41.15 1.94
13 14 1.286553 ACCAACAGGGAGTGACCAAAA 59.713 47.619 0.00 0.00 41.15 2.44
14 15 0.923358 ACCAACAGGGAGTGACCAAA 59.077 50.000 0.00 0.00 41.15 3.28
15 16 0.182537 CACCAACAGGGAGTGACCAA 59.817 55.000 0.00 0.00 41.15 3.67
16 17 1.705002 CCACCAACAGGGAGTGACCA 61.705 60.000 0.00 0.00 41.15 4.02
17 18 1.073199 CCACCAACAGGGAGTGACC 59.927 63.158 0.00 0.00 41.15 4.02
18 19 0.035458 CTCCACCAACAGGGAGTGAC 59.965 60.000 0.00 0.00 44.59 3.67
19 20 2.452116 CTCCACCAACAGGGAGTGA 58.548 57.895 0.00 0.00 44.59 3.41
23 24 3.256960 GGGCTCCACCAACAGGGA 61.257 66.667 0.00 0.00 42.05 4.20
24 25 4.366684 GGGGCTCCACCAACAGGG 62.367 72.222 0.00 0.00 42.05 4.45
25 26 2.655077 TTTGGGGCTCCACCAACAGG 62.655 60.000 3.60 0.00 46.94 4.00
26 27 0.758685 TTTTGGGGCTCCACCAACAG 60.759 55.000 3.60 0.00 46.94 3.16
27 28 0.758685 CTTTTGGGGCTCCACCAACA 60.759 55.000 3.60 0.00 46.94 3.33
28 29 1.471829 CCTTTTGGGGCTCCACCAAC 61.472 60.000 3.60 0.00 46.94 3.77
29 30 1.152355 CCTTTTGGGGCTCCACCAA 60.152 57.895 3.60 0.00 45.73 3.67
30 31 1.442886 ATCCTTTTGGGGCTCCACCA 61.443 55.000 3.60 0.00 43.94 4.17
31 32 0.252239 AATCCTTTTGGGGCTCCACC 60.252 55.000 3.60 0.00 43.94 4.61
32 33 2.100197 GTAATCCTTTTGGGGCTCCAC 58.900 52.381 3.60 0.00 43.94 4.02
33 34 1.006639 GGTAATCCTTTTGGGGCTCCA 59.993 52.381 0.00 0.00 42.25 3.86
34 35 1.688311 GGGTAATCCTTTTGGGGCTCC 60.688 57.143 0.00 0.00 40.87 4.70
35 36 1.688311 GGGGTAATCCTTTTGGGGCTC 60.688 57.143 0.00 0.00 40.87 4.70
36 37 0.338467 GGGGTAATCCTTTTGGGGCT 59.662 55.000 0.00 0.00 40.87 5.19
37 38 0.338467 AGGGGTAATCCTTTTGGGGC 59.662 55.000 0.00 0.00 40.87 5.80
38 39 1.930204 AGAGGGGTAATCCTTTTGGGG 59.070 52.381 0.00 0.00 40.87 4.96
39 40 3.757947 AAGAGGGGTAATCCTTTTGGG 57.242 47.619 0.00 0.00 40.87 4.12
59 60 5.411669 GCTCGAAAAGAGGTCATAGGAAAAA 59.588 40.000 0.00 0.00 46.91 1.94
60 61 4.935808 GCTCGAAAAGAGGTCATAGGAAAA 59.064 41.667 0.00 0.00 46.91 2.29
61 62 4.020573 TGCTCGAAAAGAGGTCATAGGAAA 60.021 41.667 0.00 0.00 46.91 3.13
62 63 3.513912 TGCTCGAAAAGAGGTCATAGGAA 59.486 43.478 0.00 0.00 46.91 3.36
63 64 3.096852 TGCTCGAAAAGAGGTCATAGGA 58.903 45.455 0.00 0.00 46.91 2.94
64 65 3.118956 AGTGCTCGAAAAGAGGTCATAGG 60.119 47.826 0.00 0.00 46.91 2.57
65 66 4.109050 GAGTGCTCGAAAAGAGGTCATAG 58.891 47.826 0.00 0.00 46.91 2.23
66 67 3.764434 AGAGTGCTCGAAAAGAGGTCATA 59.236 43.478 0.00 0.00 46.91 2.15
67 68 2.564947 AGAGTGCTCGAAAAGAGGTCAT 59.435 45.455 0.00 0.00 46.91 3.06
68 69 1.964223 AGAGTGCTCGAAAAGAGGTCA 59.036 47.619 0.00 0.00 46.91 4.02
69 70 2.029828 TGAGAGTGCTCGAAAAGAGGTC 60.030 50.000 0.00 0.00 46.91 3.85
70 71 1.964223 TGAGAGTGCTCGAAAAGAGGT 59.036 47.619 0.00 0.00 46.91 3.85
71 72 2.732412 TGAGAGTGCTCGAAAAGAGG 57.268 50.000 0.00 0.00 46.91 3.69
73 74 3.735237 AGTTGAGAGTGCTCGAAAAGA 57.265 42.857 0.00 0.00 44.33 2.52
74 75 4.509600 AGAAAGTTGAGAGTGCTCGAAAAG 59.490 41.667 0.00 0.00 44.33 2.27
75 76 4.442706 AGAAAGTTGAGAGTGCTCGAAAA 58.557 39.130 0.00 0.00 44.33 2.29
76 77 4.051922 GAGAAAGTTGAGAGTGCTCGAAA 58.948 43.478 0.00 0.00 44.33 3.46
77 78 3.068165 TGAGAAAGTTGAGAGTGCTCGAA 59.932 43.478 0.00 0.00 44.33 3.71
78 79 2.623416 TGAGAAAGTTGAGAGTGCTCGA 59.377 45.455 0.00 0.00 44.33 4.04
79 80 3.018598 TGAGAAAGTTGAGAGTGCTCG 57.981 47.619 0.00 0.00 44.33 5.03
80 81 3.932089 GGATGAGAAAGTTGAGAGTGCTC 59.068 47.826 0.00 0.00 41.67 4.26
81 82 3.307339 GGGATGAGAAAGTTGAGAGTGCT 60.307 47.826 0.00 0.00 0.00 4.40
82 83 3.006247 GGGATGAGAAAGTTGAGAGTGC 58.994 50.000 0.00 0.00 0.00 4.40
83 84 3.262915 AGGGGATGAGAAAGTTGAGAGTG 59.737 47.826 0.00 0.00 0.00 3.51
84 85 3.517500 GAGGGGATGAGAAAGTTGAGAGT 59.482 47.826 0.00 0.00 0.00 3.24
85 86 3.118445 GGAGGGGATGAGAAAGTTGAGAG 60.118 52.174 0.00 0.00 0.00 3.20
86 87 2.840651 GGAGGGGATGAGAAAGTTGAGA 59.159 50.000 0.00 0.00 0.00 3.27
87 88 2.092699 GGGAGGGGATGAGAAAGTTGAG 60.093 54.545 0.00 0.00 0.00 3.02
88 89 1.916181 GGGAGGGGATGAGAAAGTTGA 59.084 52.381 0.00 0.00 0.00 3.18
89 90 1.918957 AGGGAGGGGATGAGAAAGTTG 59.081 52.381 0.00 0.00 0.00 3.16
90 91 2.367947 AGGGAGGGGATGAGAAAGTT 57.632 50.000 0.00 0.00 0.00 2.66
91 92 2.200955 GAAGGGAGGGGATGAGAAAGT 58.799 52.381 0.00 0.00 0.00 2.66
92 93 2.486716 AGAAGGGAGGGGATGAGAAAG 58.513 52.381 0.00 0.00 0.00 2.62
93 94 2.668850 AGAAGGGAGGGGATGAGAAA 57.331 50.000 0.00 0.00 0.00 2.52
94 95 2.668850 AAGAAGGGAGGGGATGAGAA 57.331 50.000 0.00 0.00 0.00 2.87
95 96 2.668850 AAAGAAGGGAGGGGATGAGA 57.331 50.000 0.00 0.00 0.00 3.27
96 97 3.746792 AAAAAGAAGGGAGGGGATGAG 57.253 47.619 0.00 0.00 0.00 2.90
97 98 3.268595 GGTAAAAAGAAGGGAGGGGATGA 59.731 47.826 0.00 0.00 0.00 2.92
98 99 3.269643 AGGTAAAAAGAAGGGAGGGGATG 59.730 47.826 0.00 0.00 0.00 3.51
99 100 3.553235 AGGTAAAAAGAAGGGAGGGGAT 58.447 45.455 0.00 0.00 0.00 3.85
100 101 3.013984 AGGTAAAAAGAAGGGAGGGGA 57.986 47.619 0.00 0.00 0.00 4.81
101 102 3.827817 AAGGTAAAAAGAAGGGAGGGG 57.172 47.619 0.00 0.00 0.00 4.79
102 103 5.394738 AGAAAAGGTAAAAAGAAGGGAGGG 58.605 41.667 0.00 0.00 0.00 4.30
103 104 6.307776 AGAGAAAAGGTAAAAAGAAGGGAGG 58.692 40.000 0.00 0.00 0.00 4.30
104 105 6.431543 GGAGAGAAAAGGTAAAAAGAAGGGAG 59.568 42.308 0.00 0.00 0.00 4.30
105 106 6.102762 AGGAGAGAAAAGGTAAAAAGAAGGGA 59.897 38.462 0.00 0.00 0.00 4.20
106 107 6.307776 AGGAGAGAAAAGGTAAAAAGAAGGG 58.692 40.000 0.00 0.00 0.00 3.95
107 108 7.825331 AAGGAGAGAAAAGGTAAAAAGAAGG 57.175 36.000 0.00 0.00 0.00 3.46
134 135 1.617850 CTATGCAGGGCCACACAAAAA 59.382 47.619 6.18 0.00 0.00 1.94
135 136 1.255882 CTATGCAGGGCCACACAAAA 58.744 50.000 6.18 0.00 0.00 2.44
136 137 0.611618 CCTATGCAGGGCCACACAAA 60.612 55.000 6.18 0.00 38.41 2.83
137 138 1.001020 CCTATGCAGGGCCACACAA 60.001 57.895 6.18 0.00 38.41 3.33
138 139 1.281199 ATCCTATGCAGGGCCACACA 61.281 55.000 6.18 0.00 42.87 3.72
139 140 0.106519 AATCCTATGCAGGGCCACAC 60.107 55.000 6.18 0.00 42.87 3.82
140 141 0.183492 GAATCCTATGCAGGGCCACA 59.817 55.000 6.18 3.48 42.87 4.17
141 142 0.475906 AGAATCCTATGCAGGGCCAC 59.524 55.000 6.18 0.00 42.87 5.01
142 143 1.225373 AAGAATCCTATGCAGGGCCA 58.775 50.000 6.18 0.00 42.87 5.36
143 144 2.371658 AAAGAATCCTATGCAGGGCC 57.628 50.000 0.00 0.00 42.87 5.80
144 145 4.261783 GCTAAAAAGAATCCTATGCAGGGC 60.262 45.833 0.00 0.00 42.87 5.19
145 146 4.889409 TGCTAAAAAGAATCCTATGCAGGG 59.111 41.667 0.00 0.00 42.87 4.45
146 147 5.591877 ACTGCTAAAAAGAATCCTATGCAGG 59.408 40.000 14.21 0.00 46.39 4.85
148 149 8.574251 TTTACTGCTAAAAAGAATCCTATGCA 57.426 30.769 0.00 0.00 0.00 3.96
149 150 9.508567 CTTTTACTGCTAAAAAGAATCCTATGC 57.491 33.333 11.10 0.00 43.51 3.14
159 160 9.447040 GGAGTGTTTACTTTTACTGCTAAAAAG 57.553 33.333 13.61 13.61 45.33 2.27
160 161 8.958506 TGGAGTGTTTACTTTTACTGCTAAAAA 58.041 29.630 0.00 0.00 37.25 1.94
161 162 8.508883 TGGAGTGTTTACTTTTACTGCTAAAA 57.491 30.769 0.00 0.00 37.25 1.52
162 163 7.988599 TCTGGAGTGTTTACTTTTACTGCTAAA 59.011 33.333 0.00 0.00 37.25 1.85
163 164 7.440255 GTCTGGAGTGTTTACTTTTACTGCTAA 59.560 37.037 0.00 0.00 37.25 3.09
164 165 6.927381 GTCTGGAGTGTTTACTTTTACTGCTA 59.073 38.462 0.00 0.00 37.25 3.49
165 166 5.758784 GTCTGGAGTGTTTACTTTTACTGCT 59.241 40.000 0.00 0.00 37.25 4.24
166 167 5.758784 AGTCTGGAGTGTTTACTTTTACTGC 59.241 40.000 0.00 0.00 37.25 4.40
167 168 6.424207 GGAGTCTGGAGTGTTTACTTTTACTG 59.576 42.308 0.00 0.00 37.25 2.74
168 169 6.099269 TGGAGTCTGGAGTGTTTACTTTTACT 59.901 38.462 0.00 0.00 37.25 2.24
169 170 6.285990 TGGAGTCTGGAGTGTTTACTTTTAC 58.714 40.000 0.00 0.00 37.25 2.01
170 171 6.488769 TGGAGTCTGGAGTGTTTACTTTTA 57.511 37.500 0.00 0.00 37.25 1.52
171 172 5.367945 TGGAGTCTGGAGTGTTTACTTTT 57.632 39.130 0.00 0.00 37.25 2.27
172 173 5.308825 CATGGAGTCTGGAGTGTTTACTTT 58.691 41.667 0.00 0.00 37.25 2.66
173 174 4.263068 CCATGGAGTCTGGAGTGTTTACTT 60.263 45.833 5.56 0.00 37.25 2.24
174 175 3.261897 CCATGGAGTCTGGAGTGTTTACT 59.738 47.826 5.56 0.00 40.66 2.24
175 176 3.600388 CCATGGAGTCTGGAGTGTTTAC 58.400 50.000 5.56 0.00 35.70 2.01
176 177 2.027192 GCCATGGAGTCTGGAGTGTTTA 60.027 50.000 18.40 0.00 35.70 2.01
177 178 1.271597 GCCATGGAGTCTGGAGTGTTT 60.272 52.381 18.40 0.00 35.70 2.83
178 179 0.326264 GCCATGGAGTCTGGAGTGTT 59.674 55.000 18.40 0.00 35.70 3.32
179 180 1.557269 GGCCATGGAGTCTGGAGTGT 61.557 60.000 18.40 0.00 35.70 3.55
180 181 1.222936 GGCCATGGAGTCTGGAGTG 59.777 63.158 18.40 0.00 35.70 3.51
181 182 2.362369 CGGCCATGGAGTCTGGAGT 61.362 63.158 18.40 0.00 35.70 3.85
182 183 1.043116 TACGGCCATGGAGTCTGGAG 61.043 60.000 18.40 0.00 35.70 3.86
183 184 1.001120 TACGGCCATGGAGTCTGGA 59.999 57.895 18.40 0.00 35.70 3.86
184 185 1.443407 CTACGGCCATGGAGTCTGG 59.557 63.158 18.40 5.14 36.81 3.86
185 186 1.227380 GCTACGGCCATGGAGTCTG 60.227 63.158 18.40 5.43 0.00 3.51
186 187 1.381872 AGCTACGGCCATGGAGTCT 60.382 57.895 18.40 6.08 39.73 3.24
187 188 1.227380 CAGCTACGGCCATGGAGTC 60.227 63.158 18.40 2.79 39.73 3.36
188 189 2.735772 CCAGCTACGGCCATGGAGT 61.736 63.158 18.40 16.91 36.31 3.85
189 190 2.109799 CCAGCTACGGCCATGGAG 59.890 66.667 18.40 11.25 36.31 3.86
190 191 3.479203 CCCAGCTACGGCCATGGA 61.479 66.667 18.40 0.00 36.31 3.41
208 209 2.338257 GGCTGCGAGGCTAGCTAG 59.662 66.667 20.26 16.84 39.80 3.42
209 210 2.442087 TGGCTGCGAGGCTAGCTA 60.442 61.111 20.26 5.42 41.96 3.32
210 211 4.154347 GTGGCTGCGAGGCTAGCT 62.154 66.667 20.26 0.00 41.96 3.32
211 212 4.457496 TGTGGCTGCGAGGCTAGC 62.457 66.667 13.05 13.05 41.96 3.42
212 213 2.202851 CTGTGGCTGCGAGGCTAG 60.203 66.667 10.22 0.00 41.96 3.42
213 214 4.457496 GCTGTGGCTGCGAGGCTA 62.457 66.667 10.22 0.00 41.96 3.93
223 224 1.079503 GCACTTACAGTAGCTGTGGC 58.920 55.000 11.57 6.66 45.01 5.01
224 225 1.276421 AGGCACTTACAGTAGCTGTGG 59.724 52.381 11.57 7.14 45.01 4.17
225 226 2.029020 TGAGGCACTTACAGTAGCTGTG 60.029 50.000 11.57 0.00 42.25 3.66
226 227 2.248248 TGAGGCACTTACAGTAGCTGT 58.752 47.619 6.99 6.99 44.03 4.40
227 228 3.257393 CTTGAGGCACTTACAGTAGCTG 58.743 50.000 0.00 0.00 41.55 4.24
228 229 2.354203 GCTTGAGGCACTTACAGTAGCT 60.354 50.000 0.00 0.00 41.55 3.32
229 230 2.003301 GCTTGAGGCACTTACAGTAGC 58.997 52.381 0.00 0.00 41.55 3.58
242 243 3.635268 GAGCCTGGGGTGCTTGAGG 62.635 68.421 0.00 0.00 39.69 3.86
243 244 2.045536 GAGCCTGGGGTGCTTGAG 60.046 66.667 0.00 0.00 39.69 3.02
244 245 2.005606 TTTGAGCCTGGGGTGCTTGA 62.006 55.000 0.00 0.00 39.69 3.02
245 246 0.901580 ATTTGAGCCTGGGGTGCTTG 60.902 55.000 0.00 0.00 39.69 4.01
246 247 0.704076 TATTTGAGCCTGGGGTGCTT 59.296 50.000 0.00 0.00 39.69 3.91
247 248 0.704076 TTATTTGAGCCTGGGGTGCT 59.296 50.000 0.00 0.00 43.03 4.40
248 249 1.555967 TTTATTTGAGCCTGGGGTGC 58.444 50.000 0.00 0.00 0.00 5.01
249 250 2.233676 GGTTTTATTTGAGCCTGGGGTG 59.766 50.000 0.00 0.00 0.00 4.61
250 251 2.111792 AGGTTTTATTTGAGCCTGGGGT 59.888 45.455 0.00 0.00 0.00 4.95
251 252 2.497273 CAGGTTTTATTTGAGCCTGGGG 59.503 50.000 0.00 0.00 42.05 4.96
252 253 3.430453 TCAGGTTTTATTTGAGCCTGGG 58.570 45.455 8.75 0.00 44.87 4.45
253 254 5.665916 AATCAGGTTTTATTTGAGCCTGG 57.334 39.130 8.75 0.00 44.87 4.45
254 255 6.698766 GCATAATCAGGTTTTATTTGAGCCTG 59.301 38.462 0.00 0.00 45.82 4.85
255 256 6.460123 CGCATAATCAGGTTTTATTTGAGCCT 60.460 38.462 0.00 0.00 0.00 4.58
256 257 5.687285 CGCATAATCAGGTTTTATTTGAGCC 59.313 40.000 0.00 0.00 0.00 4.70
257 258 6.197096 CACGCATAATCAGGTTTTATTTGAGC 59.803 38.462 0.00 0.00 0.00 4.26
258 259 7.250569 ACACGCATAATCAGGTTTTATTTGAG 58.749 34.615 0.00 0.00 0.00 3.02
259 260 7.151999 ACACGCATAATCAGGTTTTATTTGA 57.848 32.000 0.00 0.00 0.00 2.69
260 261 7.810766 AACACGCATAATCAGGTTTTATTTG 57.189 32.000 0.00 0.00 0.00 2.32
261 262 9.915629 TTTAACACGCATAATCAGGTTTTATTT 57.084 25.926 0.00 0.00 0.00 1.40
263 264 9.515020 CATTTAACACGCATAATCAGGTTTTAT 57.485 29.630 0.00 0.00 0.00 1.40
264 265 8.516234 ACATTTAACACGCATAATCAGGTTTTA 58.484 29.630 0.00 0.00 0.00 1.52
265 266 7.328249 CACATTTAACACGCATAATCAGGTTTT 59.672 33.333 0.00 0.00 0.00 2.43
266 267 6.806249 CACATTTAACACGCATAATCAGGTTT 59.194 34.615 0.00 0.00 0.00 3.27
267 268 6.321717 CACATTTAACACGCATAATCAGGTT 58.678 36.000 0.00 0.00 0.00 3.50
268 269 5.163663 CCACATTTAACACGCATAATCAGGT 60.164 40.000 0.00 0.00 0.00 4.00
269 270 5.273170 CCACATTTAACACGCATAATCAGG 58.727 41.667 0.00 0.00 0.00 3.86
270 271 4.734854 GCCACATTTAACACGCATAATCAG 59.265 41.667 0.00 0.00 0.00 2.90
271 272 4.156739 TGCCACATTTAACACGCATAATCA 59.843 37.500 0.00 0.00 0.00 2.57
272 273 4.667262 TGCCACATTTAACACGCATAATC 58.333 39.130 0.00 0.00 0.00 1.75
273 274 4.671377 CTGCCACATTTAACACGCATAAT 58.329 39.130 0.00 0.00 0.00 1.28
274 275 3.671971 GCTGCCACATTTAACACGCATAA 60.672 43.478 0.00 0.00 0.00 1.90
275 276 2.159448 GCTGCCACATTTAACACGCATA 60.159 45.455 0.00 0.00 0.00 3.14
276 277 1.402720 GCTGCCACATTTAACACGCAT 60.403 47.619 0.00 0.00 0.00 4.73
277 278 0.039617 GCTGCCACATTTAACACGCA 60.040 50.000 0.00 0.00 0.00 5.24
278 279 0.732538 GGCTGCCACATTTAACACGC 60.733 55.000 15.17 0.00 0.00 5.34
279 280 0.454285 CGGCTGCCACATTTAACACG 60.454 55.000 20.29 0.00 0.00 4.49
280 281 0.732538 GCGGCTGCCACATTTAACAC 60.733 55.000 20.29 0.00 33.98 3.32
281 282 1.175347 TGCGGCTGCCACATTTAACA 61.175 50.000 20.29 0.30 41.78 2.41
282 283 0.173255 ATGCGGCTGCCACATTTAAC 59.827 50.000 20.29 0.00 41.78 2.01
283 284 0.455410 GATGCGGCTGCCACATTTAA 59.545 50.000 21.97 0.00 41.78 1.52
284 285 0.679321 TGATGCGGCTGCCACATTTA 60.679 50.000 21.97 12.39 41.78 1.40
285 286 1.940883 CTGATGCGGCTGCCACATTT 61.941 55.000 21.97 2.96 41.78 2.32
286 287 2.361483 TGATGCGGCTGCCACATT 60.361 55.556 21.97 7.39 41.78 2.71
287 288 2.825075 TTCTGATGCGGCTGCCACAT 62.825 55.000 21.32 21.32 41.78 3.21
288 289 3.549900 TTCTGATGCGGCTGCCACA 62.550 57.895 20.29 16.39 41.78 4.17
289 290 2.334946 TTTCTGATGCGGCTGCCAC 61.335 57.895 20.29 10.02 41.78 5.01
290 291 2.033911 TTTCTGATGCGGCTGCCA 59.966 55.556 20.29 5.60 41.78 4.92
291 292 2.486966 GTTTCTGATGCGGCTGCC 59.513 61.111 16.57 9.11 41.78 4.85
292 293 2.099062 CGTTTCTGATGCGGCTGC 59.901 61.111 11.65 11.65 43.20 5.25
293 294 2.787249 CCGTTTCTGATGCGGCTG 59.213 61.111 0.00 0.00 38.99 4.85
297 298 1.595489 GCTAATGCCGTTTCTGATGCG 60.595 52.381 0.00 0.00 0.00 4.73
298 299 1.672881 AGCTAATGCCGTTTCTGATGC 59.327 47.619 0.00 0.00 40.80 3.91
299 300 3.329743 CAGCTAATGCCGTTTCTGATG 57.670 47.619 0.00 0.00 40.80 3.07
311 312 1.293924 CTCGAAGGGTGCAGCTAATG 58.706 55.000 16.65 4.24 0.00 1.90
312 313 0.905357 ACTCGAAGGGTGCAGCTAAT 59.095 50.000 16.65 1.92 0.00 1.73
313 314 0.037326 CACTCGAAGGGTGCAGCTAA 60.037 55.000 16.65 0.00 0.00 3.09
314 315 1.591703 CACTCGAAGGGTGCAGCTA 59.408 57.895 16.65 0.00 0.00 3.32
315 316 2.345244 CACTCGAAGGGTGCAGCT 59.655 61.111 16.65 0.00 0.00 4.24
316 317 2.527951 ATCCACTCGAAGGGTGCAGC 62.528 60.000 7.55 7.55 33.78 5.25
317 318 0.460987 GATCCACTCGAAGGGTGCAG 60.461 60.000 3.93 0.00 33.78 4.41
318 319 1.596934 GATCCACTCGAAGGGTGCA 59.403 57.895 3.93 0.00 33.78 4.57
319 320 1.153349 GGATCCACTCGAAGGGTGC 60.153 63.158 6.95 0.00 33.78 5.01
320 321 1.522569 GGGATCCACTCGAAGGGTG 59.477 63.158 15.23 0.32 34.78 4.61
321 322 1.689582 GGGGATCCACTCGAAGGGT 60.690 63.158 15.23 0.00 0.00 4.34
322 323 1.383248 AGGGGATCCACTCGAAGGG 60.383 63.158 12.00 0.00 34.83 3.95
323 324 1.826024 CAGGGGATCCACTCGAAGG 59.174 63.158 15.63 0.00 34.83 3.46
324 325 1.144936 GCAGGGGATCCACTCGAAG 59.855 63.158 15.63 3.75 34.83 3.79
325 326 1.198094 TTGCAGGGGATCCACTCGAA 61.198 55.000 15.63 6.85 34.83 3.71
326 327 0.982852 ATTGCAGGGGATCCACTCGA 60.983 55.000 15.63 9.63 34.83 4.04
327 328 0.533755 GATTGCAGGGGATCCACTCG 60.534 60.000 15.63 11.29 34.83 4.18
328 329 0.179006 GGATTGCAGGGGATCCACTC 60.179 60.000 15.63 10.02 41.21 3.51
329 330 1.649271 GGGATTGCAGGGGATCCACT 61.649 60.000 12.00 12.00 42.94 4.00
330 331 1.152673 GGGATTGCAGGGGATCCAC 60.153 63.158 15.23 10.87 42.94 4.02
331 332 2.394506 GGGGATTGCAGGGGATCCA 61.395 63.158 15.23 0.00 42.94 3.41
332 333 2.087461 AGGGGATTGCAGGGGATCC 61.087 63.158 1.92 1.92 40.90 3.36
333 334 1.152368 CAGGGGATTGCAGGGGATC 59.848 63.158 0.00 0.00 0.00 3.36
334 335 2.397902 CCAGGGGATTGCAGGGGAT 61.398 63.158 0.00 0.00 0.00 3.85
335 336 3.023116 CCAGGGGATTGCAGGGGA 61.023 66.667 0.00 0.00 0.00 4.81
336 337 4.847367 GCCAGGGGATTGCAGGGG 62.847 72.222 0.00 0.00 0.00 4.79
337 338 4.847367 GGCCAGGGGATTGCAGGG 62.847 72.222 0.00 0.00 0.00 4.45
338 339 4.847367 GGGCCAGGGGATTGCAGG 62.847 72.222 4.39 0.00 0.00 4.85
339 340 3.728292 GAGGGCCAGGGGATTGCAG 62.728 68.421 6.18 0.00 0.00 4.41
340 341 3.743017 GAGGGCCAGGGGATTGCA 61.743 66.667 6.18 0.00 0.00 4.08
341 342 4.529731 GGAGGGCCAGGGGATTGC 62.530 72.222 6.18 0.00 0.00 3.56
342 343 2.697644 AGGAGGGCCAGGGGATTG 60.698 66.667 6.18 0.00 36.29 2.67
343 344 2.697644 CAGGAGGGCCAGGGGATT 60.698 66.667 6.18 0.00 36.29 3.01
344 345 4.851252 CCAGGAGGGCCAGGGGAT 62.851 72.222 6.18 0.00 37.20 3.85
353 354 4.039092 CACACCAGGCCAGGAGGG 62.039 72.222 23.04 10.94 40.85 4.30
354 355 4.039092 CCACACCAGGCCAGGAGG 62.039 72.222 23.04 15.20 38.23 4.30
381 382 3.934391 AAAAGGAGACGCGCCCTCG 62.934 63.158 18.72 0.00 39.07 4.63
422 423 1.926511 AAAATTCTGCAGCGCCCGAG 61.927 55.000 9.47 0.00 0.00 4.63
423 424 1.922135 GAAAATTCTGCAGCGCCCGA 61.922 55.000 9.47 0.00 0.00 5.14
424 425 1.514873 GAAAATTCTGCAGCGCCCG 60.515 57.895 9.47 0.00 0.00 6.13
425 426 0.244721 AAGAAAATTCTGCAGCGCCC 59.755 50.000 9.47 0.00 37.65 6.13
447 448 6.401903 CGTTGGAAAGAGAGTTTCATCATCAG 60.402 42.308 0.31 0.00 0.00 2.90
450 451 4.697352 CCGTTGGAAAGAGAGTTTCATCAT 59.303 41.667 0.31 0.00 0.00 2.45
459 460 1.377333 GGCCCCGTTGGAAAGAGAG 60.377 63.158 0.00 0.00 35.39 3.20
504 505 1.005867 GTTGACGGCGGGTGACTTA 60.006 57.895 13.24 0.00 0.00 2.24
543 544 0.744771 GGGTCCGGCAAGATGAACTC 60.745 60.000 0.00 0.00 0.00 3.01
544 545 1.299976 GGGTCCGGCAAGATGAACT 59.700 57.895 0.00 0.00 0.00 3.01
545 546 2.106683 CGGGTCCGGCAAGATGAAC 61.107 63.158 0.00 0.00 35.56 3.18
572 573 0.973496 GAGGGAGGGAGAAGCGTTCT 60.973 60.000 0.71 0.71 44.21 3.01
573 574 1.518302 GAGGGAGGGAGAAGCGTTC 59.482 63.158 0.00 0.00 0.00 3.95
574 575 2.352032 CGAGGGAGGGAGAAGCGTT 61.352 63.158 0.00 0.00 0.00 4.84
577 578 3.855853 GGCGAGGGAGGGAGAAGC 61.856 72.222 0.00 0.00 0.00 3.86
596 608 0.698818 GGGACAGGGAAAGGTGATGT 59.301 55.000 0.00 0.00 0.00 3.06
602 614 0.034089 GATGGTGGGACAGGGAAAGG 60.034 60.000 0.00 0.00 41.80 3.11
611 623 0.394352 GGTGATGGTGATGGTGGGAC 60.394 60.000 0.00 0.00 0.00 4.46
752 790 3.274393 GATCCGAACAGATCCGTGG 57.726 57.895 0.00 0.00 37.31 4.94
785 823 1.983119 TTAATCGGCTGGCCTCCCTG 61.983 60.000 3.32 0.00 0.00 4.45
786 824 1.692749 TTAATCGGCTGGCCTCCCT 60.693 57.895 3.32 0.00 0.00 4.20
791 829 1.526225 GAGGGTTAATCGGCTGGCC 60.526 63.158 0.00 0.00 0.00 5.36
796 834 0.595825 CGTACGGAGGGTTAATCGGC 60.596 60.000 7.57 0.00 0.00 5.54
842 880 3.851128 GGTCCCGAGCTACCTGGC 61.851 72.222 0.00 0.00 32.72 4.85
844 882 1.677637 GAAGGGTCCCGAGCTACCTG 61.678 65.000 0.99 0.00 35.97 4.00
845 883 1.381463 GAAGGGTCCCGAGCTACCT 60.381 63.158 0.99 0.00 35.97 3.08
848 891 0.335361 AGAAGAAGGGTCCCGAGCTA 59.665 55.000 0.99 0.00 0.00 3.32
942 985 1.002868 GTGCAGGTGAGACAGGCAT 60.003 57.895 0.00 0.00 36.79 4.40
995 1038 0.540365 TCCTCTTTGCTTGCTTGGGG 60.540 55.000 0.00 0.00 0.00 4.96
1029 1073 0.321122 GGTGAAGACTGCACAGGGAG 60.321 60.000 15.69 0.00 37.99 4.30
1035 1079 1.896220 TTCCATGGTGAAGACTGCAC 58.104 50.000 12.58 4.82 35.56 4.57
1037 1081 1.541588 GGTTTCCATGGTGAAGACTGC 59.458 52.381 12.58 0.00 0.00 4.40
1132 1176 1.447140 GCAGTCGTCGTTGCCCATA 60.447 57.895 11.64 0.00 34.28 2.74
1387 1438 0.969149 AGCACATCTGGAGACAACGA 59.031 50.000 0.00 0.00 42.06 3.85
1396 1447 1.699656 CGAAAGGCGAGCACATCTGG 61.700 60.000 0.00 0.00 44.57 3.86
1520 1571 2.559668 CTGGCAAATCCTCTTTCAGCAA 59.440 45.455 0.00 0.00 35.26 3.91
1528 1579 0.392193 CTCGTGCTGGCAAATCCTCT 60.392 55.000 0.00 0.00 35.26 3.69
1643 1706 3.424962 GCGAAAGACTTGCCAGATACAAC 60.425 47.826 0.00 0.00 0.00 3.32
1648 1711 1.446907 CAGCGAAAGACTTGCCAGAT 58.553 50.000 0.00 0.00 0.00 2.90
1651 1714 1.525765 TGCAGCGAAAGACTTGCCA 60.526 52.632 0.00 0.00 0.00 4.92
1833 1898 3.709633 TGACCGCCTCATGCTGCT 61.710 61.111 0.00 0.00 38.05 4.24
1852 1917 4.142403 GCAAGTAAATGCTGAGCCAACATA 60.142 41.667 0.23 0.00 43.06 2.29
2134 2199 5.382664 TGGTTACCCTTCAACTCTTTCTT 57.617 39.130 0.00 0.00 0.00 2.52
2188 2257 5.794894 CAACCATAAACAGAGACTACAGGT 58.205 41.667 0.00 0.00 0.00 4.00
2257 2500 6.870769 AGATGAGCATAAGGTTTTCCATTTG 58.129 36.000 0.00 0.00 43.73 2.32
2260 2503 6.904626 AGTAGATGAGCATAAGGTTTTCCAT 58.095 36.000 0.00 0.00 43.73 3.41
2289 2532 9.656040 AAATGCAAGCAATAAGTTGATCATAAA 57.344 25.926 0.00 0.00 37.53 1.40
2296 2539 5.010922 ACAGGAAATGCAAGCAATAAGTTGA 59.989 36.000 0.00 0.00 37.53 3.18
2448 2697 5.069251 ACTCTGAATCATCCTACCCTTAACG 59.931 44.000 0.00 0.00 0.00 3.18
2538 2802 8.774586 GTGACAATGTGTTCAAAAGATACTAGT 58.225 33.333 0.00 0.00 0.00 2.57
2539 2803 8.773645 TGTGACAATGTGTTCAAAAGATACTAG 58.226 33.333 0.00 0.00 0.00 2.57
2540 2804 8.669946 TGTGACAATGTGTTCAAAAGATACTA 57.330 30.769 0.00 0.00 0.00 1.82
2573 2855 1.202651 ACTTTCCTGACACTGTTCCGG 60.203 52.381 0.00 0.00 0.00 5.14
2582 2864 5.778241 TGAGATGGTACTTACTTTCCTGACA 59.222 40.000 0.00 0.00 0.00 3.58
2592 2874 7.393841 ACTAAGACACTGAGATGGTACTTAC 57.606 40.000 0.00 0.00 0.00 2.34
2607 2889 4.925646 CCCCTTACGTTGTAACTAAGACAC 59.074 45.833 0.00 0.00 0.00 3.67
2660 2942 4.104102 TCAAGAACATTAGGGTGGTTCAGT 59.896 41.667 0.00 0.00 42.50 3.41
2669 2951 6.349611 CCAAGACAACATCAAGAACATTAGGG 60.350 42.308 0.00 0.00 0.00 3.53
2674 2956 3.058016 CGCCAAGACAACATCAAGAACAT 60.058 43.478 0.00 0.00 0.00 2.71
2703 2985 1.811266 CACCCAGCATCGAAGGACG 60.811 63.158 0.00 0.00 44.09 4.79
2835 3141 9.620660 CAGGATACAAAACACAAGTTAATAACC 57.379 33.333 0.00 0.00 36.26 2.85
2839 3145 8.691661 AGACAGGATACAAAACACAAGTTAAT 57.308 30.769 0.00 0.00 36.26 1.40
2840 3146 8.514330 AAGACAGGATACAAAACACAAGTTAA 57.486 30.769 0.00 0.00 36.26 2.01
2841 3147 7.227910 GGAAGACAGGATACAAAACACAAGTTA 59.772 37.037 0.00 0.00 36.26 2.24
2866 3173 3.350833 AGCTGAGCTTTAGTTCATTGGG 58.649 45.455 0.00 0.00 33.89 4.12
2918 3225 8.506168 AAACACACATTATTACTGTAGATGGG 57.494 34.615 7.95 7.95 0.00 4.00
2935 3242 7.934665 ACATAACATAAGTGAGGTAAACACACA 59.065 33.333 0.00 0.00 40.25 3.72
2951 3258 7.038659 GGGCAGTAAAATTGCACATAACATAA 58.961 34.615 0.00 0.00 44.32 1.90
2984 3291 6.658831 CACTAAACTACATCACACTGTTTGG 58.341 40.000 0.00 0.00 35.96 3.28
3000 3307 8.409358 AATCTTGAACCATTTAGCACTAAACT 57.591 30.769 5.03 0.00 37.80 2.66
3033 3340 1.154197 CACTGACAGGCACACATGAG 58.846 55.000 7.51 0.00 0.00 2.90
3044 3351 0.179048 TCACCTTGTGCCACTGACAG 60.179 55.000 0.00 0.00 32.98 3.51
3053 3360 2.679837 CTGGTCATGTATCACCTTGTGC 59.320 50.000 3.24 0.00 33.36 4.57
3077 3384 4.601794 CAACCCCTGCCCTGCACA 62.602 66.667 0.00 0.00 33.79 4.57
3084 3391 1.194121 ATTTCTTGCCAACCCCTGCC 61.194 55.000 0.00 0.00 0.00 4.85
3091 3398 4.846779 TCAGGTGTTATTTCTTGCCAAC 57.153 40.909 0.00 0.00 0.00 3.77
3114 3421 1.557832 GTTATGCAGACCCCAGTACCA 59.442 52.381 0.00 0.00 0.00 3.25
3133 3440 3.818210 TGCACAAACCATACAATTCGAGT 59.182 39.130 0.00 0.00 0.00 4.18
3136 3443 2.916716 GCTGCACAAACCATACAATTCG 59.083 45.455 0.00 0.00 0.00 3.34
3138 3445 4.497300 GATGCTGCACAAACCATACAATT 58.503 39.130 3.57 0.00 0.00 2.32
3147 3454 0.527565 AATCCGGATGCTGCACAAAC 59.472 50.000 19.95 0.00 0.00 2.93
3162 3469 9.525826 AAATTTCTATATCCAGTCCATGAATCC 57.474 33.333 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.