Multiple sequence alignment - TraesCS7B01G373600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G373600 chr7B 100.000 2416 0 0 1 2416 639276925 639279340 0.000000e+00 4462.0
1 TraesCS7B01G373600 chr7B 80.690 927 162 10 1000 1925 639383233 639382323 0.000000e+00 704.0
2 TraesCS7B01G373600 chr7B 80.914 744 126 10 1196 1925 639393048 639393789 9.130000e-160 573.0
3 TraesCS7B01G373600 chr7B 87.131 474 50 7 1167 1631 639292666 639293137 7.210000e-146 527.0
4 TraesCS7B01G373600 chr7B 100.000 261 0 0 2676 2936 639279600 639279860 1.580000e-132 483.0
5 TraesCS7B01G373600 chr7B 84.983 293 40 4 1 292 412813572 412813861 7.960000e-76 294.0
6 TraesCS7B01G373600 chr7B 95.455 88 4 0 1925 2012 600094875 600094788 1.100000e-29 141.0
7 TraesCS7B01G373600 chr7B 92.708 96 5 2 1918 2012 250751166 250751072 1.420000e-28 137.0
8 TraesCS7B01G373600 chr7B 94.382 89 5 0 1918 2006 745433056 745433144 1.420000e-28 137.0
9 TraesCS7B01G373600 chr7A 91.563 1612 69 27 369 1925 668734952 668733353 0.000000e+00 2161.0
10 TraesCS7B01G373600 chr7A 80.583 927 163 10 1000 1925 668524272 668525182 0.000000e+00 699.0
11 TraesCS7B01G373600 chr7A 90.206 388 30 6 2011 2395 668732020 668731638 1.570000e-137 499.0
12 TraesCS7B01G373600 chr7A 98.917 277 3 0 1649 1925 668059903 668060179 2.030000e-136 496.0
13 TraesCS7B01G373600 chr7A 79.603 554 101 8 1376 1923 669027332 669027879 1.280000e-103 387.0
14 TraesCS7B01G373600 chr7A 84.158 404 44 11 1167 1561 668679227 668678835 9.940000e-100 374.0
15 TraesCS7B01G373600 chr7A 89.320 206 15 4 2725 2925 566993078 566993281 4.860000e-63 252.0
16 TraesCS7B01G373600 chr7A 96.296 54 2 0 2676 2729 233077701 233077648 4.030000e-14 89.8
17 TraesCS7B01G373600 chr7A 87.500 80 7 2 772 850 668524045 668524122 4.030000e-14 89.8
18 TraesCS7B01G373600 chr7A 82.558 86 15 0 999 1084 667229467 667229552 3.140000e-10 76.8
19 TraesCS7B01G373600 chr7A 78.049 123 25 2 1019 1140 668312318 668312197 3.140000e-10 76.8
20 TraesCS7B01G373600 chr7D 90.730 1370 82 23 594 1925 576655784 576657146 0.000000e+00 1784.0
21 TraesCS7B01G373600 chr7D 80.365 932 164 12 996 1925 576734783 576735697 0.000000e+00 689.0
22 TraesCS7B01G373600 chr7D 82.828 693 102 9 1247 1923 576704198 576703507 3.240000e-169 604.0
23 TraesCS7B01G373600 chr7D 88.294 299 32 3 1 299 542241270 542241565 3.600000e-94 355.0
24 TraesCS7B01G373600 chr7D 92.571 175 9 3 2728 2900 416024324 416024152 6.280000e-62 248.0
25 TraesCS7B01G373600 chr7D 88.670 203 12 8 2728 2925 391572946 391572750 1.360000e-58 237.0
26 TraesCS7B01G373600 chr7D 79.503 161 31 2 996 1155 576747191 576747350 2.390000e-21 113.0
27 TraesCS7B01G373600 chr7D 96.078 51 2 0 2676 2726 63565807 63565857 1.880000e-12 84.2
28 TraesCS7B01G373600 chr5B 88.396 293 33 1 2 293 311519827 311519535 4.660000e-93 351.0
29 TraesCS7B01G373600 chr5B 85.085 295 38 6 4 297 604230672 604230961 2.210000e-76 296.0
30 TraesCS7B01G373600 chr5B 84.899 298 39 6 4 300 604232465 604232757 2.210000e-76 296.0
31 TraesCS7B01G373600 chr2A 85.240 271 38 2 18 288 535215026 535214758 8.010000e-71 278.0
32 TraesCS7B01G373600 chr2A 96.552 87 3 0 1926 2012 18860610 18860524 8.480000e-31 145.0
33 TraesCS7B01G373600 chr6A 83.755 277 41 3 18 292 479226028 479226302 2.900000e-65 259.0
34 TraesCS7B01G373600 chr6A 90.816 98 8 1 1909 2006 597024265 597024361 2.370000e-26 130.0
35 TraesCS7B01G373600 chr2B 82.993 294 40 9 18 308 18603534 18603820 1.040000e-64 257.0
36 TraesCS7B01G373600 chr2B 98.750 80 1 0 1927 2006 686997 687076 3.050000e-30 143.0
37 TraesCS7B01G373600 chr2B 95.455 88 4 0 1925 2012 782126578 782126665 1.100000e-29 141.0
38 TraesCS7B01G373600 chr2B 95.402 87 4 0 1926 2012 47080140 47080054 3.950000e-29 139.0
39 TraesCS7B01G373600 chr4A 89.655 203 15 4 2728 2925 729303985 729303784 1.350000e-63 254.0
40 TraesCS7B01G373600 chr4A 89.604 202 15 4 2729 2925 20008305 20008105 4.860000e-63 252.0
41 TraesCS7B01G373600 chr4A 88.670 203 17 4 2728 2925 19959492 19959291 2.920000e-60 243.0
42 TraesCS7B01G373600 chr4A 96.296 54 2 0 2676 2729 667376934 667376987 4.030000e-14 89.8
43 TraesCS7B01G373600 chr4A 96.296 54 2 0 2676 2729 725921766 725921713 4.030000e-14 89.8
44 TraesCS7B01G373600 chr4A 94.444 54 3 0 2676 2729 729304087 729304034 1.880000e-12 84.2
45 TraesCS7B01G373600 chr3A 89.055 201 16 4 2730 2925 738715895 738715696 8.130000e-61 244.0
46 TraesCS7B01G373600 chr5A 88.670 203 17 4 2728 2925 513206657 513206456 2.920000e-60 243.0
47 TraesCS7B01G373600 chr5A 96.629 89 2 1 1918 2006 544035555 544035642 2.360000e-31 147.0
48 TraesCS7B01G373600 chr5A 94.444 54 3 0 2676 2729 428401766 428401713 1.880000e-12 84.2
49 TraesCS7B01G373600 chr2D 91.111 180 14 1 2728 2905 60772347 60772168 2.920000e-60 243.0
50 TraesCS7B01G373600 chr1B 83.058 242 35 6 63 301 1465227 1464989 6.370000e-52 215.0
51 TraesCS7B01G373600 chr1A 98.148 54 1 0 2676 2729 17255800 17255747 8.660000e-16 95.3
52 TraesCS7B01G373600 chr5D 96.296 54 2 0 2676 2729 333980834 333980887 4.030000e-14 89.8
53 TraesCS7B01G373600 chr6D 94.444 54 3 0 2676 2729 402963220 402963273 1.880000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G373600 chr7B 639276925 639279860 2935 False 2472.5 4462 100.0000 1 2936 2 chr7B.!!$F5 2935
1 TraesCS7B01G373600 chr7B 639382323 639383233 910 True 704.0 704 80.6900 1000 1925 1 chr7B.!!$R3 925
2 TraesCS7B01G373600 chr7B 639393048 639393789 741 False 573.0 573 80.9140 1196 1925 1 chr7B.!!$F3 729
3 TraesCS7B01G373600 chr7A 668731638 668734952 3314 True 1330.0 2161 90.8845 369 2395 2 chr7A.!!$R4 2026
4 TraesCS7B01G373600 chr7A 668524045 668525182 1137 False 394.4 699 84.0415 772 1925 2 chr7A.!!$F5 1153
5 TraesCS7B01G373600 chr7A 669027332 669027879 547 False 387.0 387 79.6030 1376 1923 1 chr7A.!!$F4 547
6 TraesCS7B01G373600 chr7D 576655784 576657146 1362 False 1784.0 1784 90.7300 594 1925 1 chr7D.!!$F3 1331
7 TraesCS7B01G373600 chr7D 576734783 576735697 914 False 689.0 689 80.3650 996 1925 1 chr7D.!!$F4 929
8 TraesCS7B01G373600 chr7D 576703507 576704198 691 True 604.0 604 82.8280 1247 1923 1 chr7D.!!$R3 676
9 TraesCS7B01G373600 chr5B 604230672 604232757 2085 False 296.0 296 84.9920 4 300 2 chr5B.!!$F1 296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 812 0.037590 TAATCACACCCCACCTGCAC 59.962 55.0 0.00 0.00 0.0 4.57 F
357 829 0.109689 CACTGTCTCCTTCGGTCGAC 60.110 60.0 7.13 7.13 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 2937 1.092345 GCGAGCACTTCCCCTTCATC 61.092 60.000 0.0 0.0 0.0 2.92 R
2243 4845 1.205820 GACTTAAACACGCACCGGC 59.794 57.895 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.466167 CTGGTTCTCGCAACAATCAGG 59.534 52.381 0.31 0.00 0.00 3.86
22 23 0.804989 GGTTCTCGCAACAATCAGGG 59.195 55.000 0.31 0.00 0.00 4.45
29 30 0.109132 GCAACAATCAGGGGCTTTCG 60.109 55.000 0.00 0.00 0.00 3.46
50 51 5.457140 TCGCGTGCAAAGAAATAAAATTCT 58.543 33.333 5.77 0.00 41.34 2.40
53 54 6.033831 CGCGTGCAAAGAAATAAAATTCTGAT 59.966 34.615 0.00 0.00 39.54 2.90
54 55 7.168796 GCGTGCAAAGAAATAAAATTCTGATG 58.831 34.615 0.00 0.00 39.54 3.07
55 56 7.148755 GCGTGCAAAGAAATAAAATTCTGATGT 60.149 33.333 0.00 0.00 39.54 3.06
56 57 8.702438 CGTGCAAAGAAATAAAATTCTGATGTT 58.298 29.630 0.00 0.00 39.54 2.71
84 85 1.474478 TGCAAAACCAACACGTCACAT 59.526 42.857 0.00 0.00 0.00 3.21
90 91 1.003118 ACCAACACGTCACATGCCTAT 59.997 47.619 0.00 0.00 0.00 2.57
99 100 3.488553 CGTCACATGCCTATTCTACACGA 60.489 47.826 0.00 0.00 0.00 4.35
148 149 0.249615 TGCTATCACGCCTCATCAGC 60.250 55.000 0.00 0.00 0.00 4.26
178 179 3.117346 GCGTATTCAAACGAGTTTTGCAC 59.883 43.478 0.00 0.00 45.68 4.57
194 195 1.063972 CACCGTATTTGCATGCCCG 59.936 57.895 16.68 9.30 0.00 6.13
196 197 0.678366 ACCGTATTTGCATGCCCGAA 60.678 50.000 16.68 7.97 0.00 4.30
203 204 1.112315 TTGCATGCCCGAACCAAGTT 61.112 50.000 16.68 0.00 0.00 2.66
204 205 0.250945 TGCATGCCCGAACCAAGTTA 60.251 50.000 16.68 0.00 0.00 2.24
217 218 2.795329 CCAAGTTATGGCACCAGTTCT 58.205 47.619 0.00 0.00 43.80 3.01
235 236 8.742777 ACCAGTTCTATGTATGTCGTAAGTTTA 58.257 33.333 0.00 0.00 39.48 2.01
258 259 6.715347 AGGCACTAAAATGACTTTTCTTGT 57.285 33.333 0.00 0.00 32.30 3.16
272 744 9.444600 TGACTTTTCTTGTCAAGTTTAAGTACT 57.555 29.630 19.75 0.00 40.89 2.73
277 749 6.053005 TCTTGTCAAGTTTAAGTACTGGTGG 58.947 40.000 12.30 0.00 0.00 4.61
290 762 4.838986 AGTACTGGTGGTGTAATTGACTCT 59.161 41.667 0.00 0.00 0.00 3.24
293 765 5.445964 ACTGGTGGTGTAATTGACTCTTTT 58.554 37.500 0.00 0.00 0.00 2.27
294 766 5.531287 ACTGGTGGTGTAATTGACTCTTTTC 59.469 40.000 0.00 0.00 0.00 2.29
295 767 5.690865 TGGTGGTGTAATTGACTCTTTTCT 58.309 37.500 0.00 0.00 0.00 2.52
296 768 6.126409 TGGTGGTGTAATTGACTCTTTTCTT 58.874 36.000 0.00 0.00 0.00 2.52
297 769 6.605594 TGGTGGTGTAATTGACTCTTTTCTTT 59.394 34.615 0.00 0.00 0.00 2.52
300 772 8.807581 GTGGTGTAATTGACTCTTTTCTTTTTG 58.192 33.333 0.00 0.00 0.00 2.44
301 773 8.744652 TGGTGTAATTGACTCTTTTCTTTTTGA 58.255 29.630 0.00 0.00 0.00 2.69
302 774 9.020813 GGTGTAATTGACTCTTTTCTTTTTGAC 57.979 33.333 0.00 0.00 0.00 3.18
303 775 9.788960 GTGTAATTGACTCTTTTCTTTTTGACT 57.211 29.630 0.00 0.00 0.00 3.41
305 777 9.452065 GTAATTGACTCTTTTCTTTTTGACTCC 57.548 33.333 0.00 0.00 0.00 3.85
306 778 7.645058 ATTGACTCTTTTCTTTTTGACTCCA 57.355 32.000 0.00 0.00 0.00 3.86
307 779 7.645058 TTGACTCTTTTCTTTTTGACTCCAT 57.355 32.000 0.00 0.00 0.00 3.41
308 780 7.645058 TGACTCTTTTCTTTTTGACTCCATT 57.355 32.000 0.00 0.00 0.00 3.16
309 781 7.483307 TGACTCTTTTCTTTTTGACTCCATTG 58.517 34.615 0.00 0.00 0.00 2.82
311 783 8.242729 ACTCTTTTCTTTTTGACTCCATTGAT 57.757 30.769 0.00 0.00 0.00 2.57
312 784 8.139989 ACTCTTTTCTTTTTGACTCCATTGATG 58.860 33.333 0.00 0.00 0.00 3.07
313 785 6.925165 TCTTTTCTTTTTGACTCCATTGATGC 59.075 34.615 0.00 0.00 0.00 3.91
314 786 6.409524 TTTCTTTTTGACTCCATTGATGCT 57.590 33.333 0.00 0.00 0.00 3.79
315 787 6.409524 TTCTTTTTGACTCCATTGATGCTT 57.590 33.333 0.00 0.00 0.00 3.91
316 788 6.409524 TCTTTTTGACTCCATTGATGCTTT 57.590 33.333 0.00 0.00 0.00 3.51
317 789 6.449698 TCTTTTTGACTCCATTGATGCTTTC 58.550 36.000 0.00 0.00 0.00 2.62
318 790 5.787953 TTTTGACTCCATTGATGCTTTCA 57.212 34.783 0.00 0.00 0.00 2.69
319 791 4.771590 TTGACTCCATTGATGCTTTCAC 57.228 40.909 0.00 0.00 32.84 3.18
320 792 3.084039 TGACTCCATTGATGCTTTCACC 58.916 45.455 0.00 0.00 32.84 4.02
321 793 3.245016 TGACTCCATTGATGCTTTCACCT 60.245 43.478 0.00 0.00 32.84 4.00
323 795 4.922206 ACTCCATTGATGCTTTCACCTAA 58.078 39.130 0.00 0.00 32.84 2.69
326 798 5.508567 TCCATTGATGCTTTCACCTAATCA 58.491 37.500 0.00 0.00 32.84 2.57
328 800 5.125900 CCATTGATGCTTTCACCTAATCACA 59.874 40.000 0.00 0.00 32.84 3.58
329 801 5.627499 TTGATGCTTTCACCTAATCACAC 57.373 39.130 0.00 0.00 32.84 3.82
330 802 4.009675 TGATGCTTTCACCTAATCACACC 58.990 43.478 0.00 0.00 0.00 4.16
331 803 2.790433 TGCTTTCACCTAATCACACCC 58.210 47.619 0.00 0.00 0.00 4.61
335 807 0.988832 TCACCTAATCACACCCCACC 59.011 55.000 0.00 0.00 0.00 4.61
336 808 0.991920 CACCTAATCACACCCCACCT 59.008 55.000 0.00 0.00 0.00 4.00
337 809 0.991920 ACCTAATCACACCCCACCTG 59.008 55.000 0.00 0.00 0.00 4.00
339 811 0.327924 CTAATCACACCCCACCTGCA 59.672 55.000 0.00 0.00 0.00 4.41
340 812 0.037590 TAATCACACCCCACCTGCAC 59.962 55.000 0.00 0.00 0.00 4.57
341 813 1.719063 AATCACACCCCACCTGCACT 61.719 55.000 0.00 0.00 0.00 4.40
342 814 2.416107 ATCACACCCCACCTGCACTG 62.416 60.000 0.00 0.00 0.00 3.66
343 815 3.096495 ACACCCCACCTGCACTGT 61.096 61.111 0.00 0.00 0.00 3.55
344 816 2.281761 CACCCCACCTGCACTGTC 60.282 66.667 0.00 0.00 0.00 3.51
345 817 2.448542 ACCCCACCTGCACTGTCT 60.449 61.111 0.00 0.00 0.00 3.41
347 819 2.348998 CCCACCTGCACTGTCTCC 59.651 66.667 0.00 0.00 0.00 3.71
348 820 2.219875 CCCACCTGCACTGTCTCCT 61.220 63.158 0.00 0.00 0.00 3.69
349 821 1.757306 CCACCTGCACTGTCTCCTT 59.243 57.895 0.00 0.00 0.00 3.36
350 822 0.321122 CCACCTGCACTGTCTCCTTC 60.321 60.000 0.00 0.00 0.00 3.46
351 823 0.668706 CACCTGCACTGTCTCCTTCG 60.669 60.000 0.00 0.00 0.00 3.79
352 824 1.079543 CCTGCACTGTCTCCTTCGG 60.080 63.158 0.00 0.00 0.00 4.30
353 825 1.668294 CTGCACTGTCTCCTTCGGT 59.332 57.895 0.00 0.00 0.00 4.69
354 826 0.389166 CTGCACTGTCTCCTTCGGTC 60.389 60.000 0.00 0.00 0.00 4.79
355 827 1.444553 GCACTGTCTCCTTCGGTCG 60.445 63.158 0.00 0.00 0.00 4.79
356 828 1.863662 GCACTGTCTCCTTCGGTCGA 61.864 60.000 0.00 0.00 0.00 4.20
357 829 0.109689 CACTGTCTCCTTCGGTCGAC 60.110 60.000 7.13 7.13 0.00 4.20
358 830 0.250814 ACTGTCTCCTTCGGTCGACT 60.251 55.000 16.46 0.00 0.00 4.18
359 831 0.448593 CTGTCTCCTTCGGTCGACTC 59.551 60.000 16.46 4.72 0.00 3.36
360 832 1.296755 TGTCTCCTTCGGTCGACTCG 61.297 60.000 16.46 16.79 0.00 4.18
361 833 1.004080 TCTCCTTCGGTCGACTCGT 60.004 57.895 16.46 0.00 0.00 4.18
362 834 1.018226 TCTCCTTCGGTCGACTCGTC 61.018 60.000 16.46 0.00 0.00 4.20
363 835 1.004080 TCCTTCGGTCGACTCGTCT 60.004 57.895 16.46 0.00 0.00 4.18
364 836 1.018226 TCCTTCGGTCGACTCGTCTC 61.018 60.000 16.46 0.00 0.00 3.36
365 837 1.020333 CCTTCGGTCGACTCGTCTCT 61.020 60.000 16.46 0.00 0.00 3.10
366 838 1.638133 CTTCGGTCGACTCGTCTCTA 58.362 55.000 16.46 0.00 0.00 2.43
367 839 1.324134 CTTCGGTCGACTCGTCTCTAC 59.676 57.143 16.46 0.00 0.00 2.59
389 861 1.966451 CCGCCGGCAGTCTTCTTTT 60.966 57.895 28.98 0.00 0.00 2.27
516 994 2.750237 AAATCCGGCCGCAACCTC 60.750 61.111 22.85 0.00 0.00 3.85
533 1011 2.324541 CCTCTCCGGATTGATCCTCTT 58.675 52.381 3.57 0.00 44.93 2.85
535 1013 3.257127 CCTCTCCGGATTGATCCTCTTAC 59.743 52.174 3.57 0.00 44.93 2.34
564 1047 0.179097 GGAGATCAGCCGTTGTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
567 1050 0.802607 GATCAGCCGTTGTCCTCGTC 60.803 60.000 0.00 0.00 0.00 4.20
568 1051 1.532604 ATCAGCCGTTGTCCTCGTCA 61.533 55.000 0.00 0.00 0.00 4.35
582 1065 4.593864 GTCATCTCCTCCGCCGGC 62.594 72.222 19.07 19.07 0.00 6.13
618 1101 1.446272 CGTCCTTTGCCTCCTCGAC 60.446 63.158 0.00 0.00 0.00 4.20
670 1165 3.142174 GGCTAACCCTGTAATCATCAGC 58.858 50.000 0.00 0.00 0.00 4.26
671 1166 3.181450 GGCTAACCCTGTAATCATCAGCT 60.181 47.826 0.00 0.00 0.00 4.24
683 1178 9.926158 CTGTAATCATCAGCTCTACTAATTCAT 57.074 33.333 0.00 0.00 0.00 2.57
686 1181 8.830201 AATCATCAGCTCTACTAATTCATGAC 57.170 34.615 0.00 0.00 0.00 3.06
702 1197 4.373116 ACCGTCCACGCGCAGAAT 62.373 61.111 5.73 0.00 38.18 2.40
703 1198 3.118454 CCGTCCACGCGCAGAATT 61.118 61.111 5.73 0.00 38.18 2.17
704 1199 1.807981 CCGTCCACGCGCAGAATTA 60.808 57.895 5.73 0.00 38.18 1.40
705 1200 1.631072 CGTCCACGCGCAGAATTAG 59.369 57.895 5.73 0.00 0.00 1.73
706 1201 1.076533 CGTCCACGCGCAGAATTAGT 61.077 55.000 5.73 0.00 0.00 2.24
770 1323 1.026718 CAACCAATCGACCTCAGCCC 61.027 60.000 0.00 0.00 0.00 5.19
812 1365 3.659092 TGCCGGCAAAACTCGCAG 61.659 61.111 30.74 0.00 0.00 5.18
887 1449 0.680061 GGTACCTCCTCCATTAGGCG 59.320 60.000 4.06 0.00 46.10 5.52
891 1453 2.827715 CTCCTCCATTAGGCGGACT 58.172 57.895 0.00 0.00 43.85 3.85
892 1454 1.996798 CTCCTCCATTAGGCGGACTA 58.003 55.000 0.00 0.00 43.85 2.59
1278 2516 3.133946 GATCCGAGTGGGGAGCTC 58.866 66.667 4.71 4.71 39.40 4.09
1623 2937 0.695347 AGGCCCAGTTCTTTGGAGAG 59.305 55.000 0.00 0.00 40.87 3.20
1631 2945 4.260170 CAGTTCTTTGGAGAGATGAAGGG 58.740 47.826 0.00 0.00 32.44 3.95
1935 3288 4.383774 CGAGTTCATCGCACTGTTTTAA 57.616 40.909 0.00 0.00 45.98 1.52
1936 3289 4.768145 CGAGTTCATCGCACTGTTTTAAA 58.232 39.130 0.00 0.00 45.98 1.52
1937 3290 5.382303 CGAGTTCATCGCACTGTTTTAAAT 58.618 37.500 0.00 0.00 45.98 1.40
1940 3293 6.314784 AGTTCATCGCACTGTTTTAAATAGC 58.685 36.000 1.36 0.00 0.00 2.97
1941 3294 5.229921 TCATCGCACTGTTTTAAATAGCC 57.770 39.130 1.36 0.00 0.00 3.93
1943 3296 2.417239 TCGCACTGTTTTAAATAGCCCG 59.583 45.455 1.36 5.03 0.00 6.13
1944 3297 2.526077 GCACTGTTTTAAATAGCCCGC 58.474 47.619 1.36 0.00 0.00 6.13
1945 3298 2.163613 GCACTGTTTTAAATAGCCCGCT 59.836 45.455 1.36 0.00 0.00 5.52
1948 3301 5.237779 GCACTGTTTTAAATAGCCCGCTATA 59.762 40.000 9.56 0.00 38.20 1.31
1949 3302 6.565999 GCACTGTTTTAAATAGCCCGCTATAG 60.566 42.308 9.56 4.62 38.20 1.31
1950 3303 5.469084 ACTGTTTTAAATAGCCCGCTATAGC 59.531 40.000 15.09 15.09 38.20 2.97
1951 3304 5.617252 TGTTTTAAATAGCCCGCTATAGCT 58.383 37.500 21.98 6.31 43.20 3.32
1953 3306 6.204108 TGTTTTAAATAGCCCGCTATAGCTTC 59.796 38.462 21.98 10.71 40.56 3.86
1954 3307 2.656560 AATAGCCCGCTATAGCTTCG 57.343 50.000 21.98 10.15 40.56 3.79
1955 3308 0.173708 ATAGCCCGCTATAGCTTCGC 59.826 55.000 21.98 18.46 40.56 4.70
1956 3309 0.894184 TAGCCCGCTATAGCTTCGCT 60.894 55.000 24.41 24.41 43.41 4.93
1957 3310 0.894184 AGCCCGCTATAGCTTCGCTA 60.894 55.000 21.98 0.00 45.55 4.26
1965 3318 3.474007 TAGCTTCGCTATAGCACGC 57.526 52.632 23.99 20.26 41.11 5.34
1966 3319 0.952280 TAGCTTCGCTATAGCACGCT 59.048 50.000 25.78 25.78 41.11 5.07
1967 3320 0.952280 AGCTTCGCTATAGCACGCTA 59.048 50.000 23.99 0.39 41.11 4.26
1968 3321 1.542030 AGCTTCGCTATAGCACGCTAT 59.458 47.619 23.99 15.45 41.11 2.97
1969 3322 2.747989 AGCTTCGCTATAGCACGCTATA 59.252 45.455 23.99 15.99 41.11 1.31
1979 3332 7.812309 CTATAGCACGCTATAGCATTTACAA 57.188 36.000 25.42 3.88 46.26 2.41
1980 3333 8.239681 CTATAGCACGCTATAGCATTTACAAA 57.760 34.615 25.42 2.45 46.26 2.83
1981 3334 5.811399 AGCACGCTATAGCATTTACAAAA 57.189 34.783 23.99 0.00 42.21 2.44
1982 3335 5.810525 AGCACGCTATAGCATTTACAAAAG 58.189 37.500 23.99 6.48 42.21 2.27
1984 3337 5.448632 GCACGCTATAGCATTTACAAAAGGT 60.449 40.000 23.99 6.60 42.21 3.50
1986 3339 6.037172 CACGCTATAGCATTTACAAAAGGTCT 59.963 38.462 23.99 0.00 42.21 3.85
1987 3340 6.598064 ACGCTATAGCATTTACAAAAGGTCTT 59.402 34.615 23.99 0.00 42.21 3.01
1990 3343 3.900941 AGCATTTACAAAAGGTCTTGCG 58.099 40.909 0.00 0.00 35.26 4.85
1991 3344 2.408368 GCATTTACAAAAGGTCTTGCGC 59.592 45.455 0.00 0.00 0.00 6.09
1992 3345 3.857010 GCATTTACAAAAGGTCTTGCGCT 60.857 43.478 9.73 0.00 0.00 5.92
1993 3346 4.614993 GCATTTACAAAAGGTCTTGCGCTA 60.615 41.667 9.73 0.00 0.00 4.26
1994 3347 5.457140 CATTTACAAAAGGTCTTGCGCTAA 58.543 37.500 9.73 0.00 0.00 3.09
1995 3348 4.742438 TTACAAAAGGTCTTGCGCTAAG 57.258 40.909 9.73 11.02 37.76 2.18
1996 3349 2.846193 ACAAAAGGTCTTGCGCTAAGA 58.154 42.857 9.73 13.31 43.01 2.10
1997 3350 2.808543 ACAAAAGGTCTTGCGCTAAGAG 59.191 45.455 18.44 10.73 45.71 2.85
1998 3351 3.067106 CAAAAGGTCTTGCGCTAAGAGA 58.933 45.455 18.44 9.99 45.71 3.10
1999 3352 2.371910 AAGGTCTTGCGCTAAGAGAC 57.628 50.000 18.44 18.59 45.71 3.36
2001 3354 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
2002 3355 2.300437 AGGTCTTGCGCTAAGAGACTTT 59.700 45.455 22.91 14.31 45.71 2.66
2003 3356 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
2005 3358 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
2006 3359 2.543777 TGCGCTAAGAGACTTTGGTT 57.456 45.000 9.73 0.00 0.00 3.67
2008 3361 3.997762 TGCGCTAAGAGACTTTGGTTTA 58.002 40.909 9.73 0.00 0.00 2.01
2021 4621 8.232913 AGACTTTGGTTTAAACTGCTAAATGA 57.767 30.769 17.50 0.00 0.00 2.57
2103 4703 9.334947 CAGCTCAGGAAATCTATTTCATTCTTA 57.665 33.333 15.36 0.00 46.03 2.10
2128 4728 8.592105 ACAAAATGTCTAAAAATCCACACATG 57.408 30.769 0.00 0.00 0.00 3.21
2158 4760 6.867816 TGATGGTGTATTTCATGCAAAGTTTC 59.132 34.615 0.00 0.00 0.00 2.78
2174 4776 7.148573 TGCAAAGTTTCGCATTCTTGTTTAAAA 60.149 29.630 8.15 0.00 31.95 1.52
2214 4816 7.962441 TGCTTGTCTCCTTGTATATGCTTATA 58.038 34.615 0.00 0.00 0.00 0.98
2215 4817 8.597167 TGCTTGTCTCCTTGTATATGCTTATAT 58.403 33.333 2.92 0.00 0.00 0.86
2216 4818 9.092876 GCTTGTCTCCTTGTATATGCTTATATC 57.907 37.037 2.92 0.00 0.00 1.63
2242 4844 4.487714 TTCCTACCTTCAGCCACATAAG 57.512 45.455 0.00 0.00 0.00 1.73
2243 4845 2.771943 TCCTACCTTCAGCCACATAAGG 59.228 50.000 0.00 0.00 44.45 2.69
2258 4860 0.250209 TAAGGCCGGTGCGTGTTTAA 60.250 50.000 1.90 0.00 38.85 1.52
2270 4872 5.195379 GTGCGTGTTTAAGTCTTTGTACTG 58.805 41.667 0.00 0.00 0.00 2.74
2320 4922 8.603242 TCTAATTTAGGAATAACATTCGGCTC 57.397 34.615 3.66 0.00 0.00 4.70
2395 4997 4.513318 CCTTTCTCCTCACACTTTCACTTC 59.487 45.833 0.00 0.00 0.00 3.01
2396 4998 4.753516 TTCTCCTCACACTTTCACTTCA 57.246 40.909 0.00 0.00 0.00 3.02
2397 4999 4.060038 TCTCCTCACACTTTCACTTCAC 57.940 45.455 0.00 0.00 0.00 3.18
2398 5000 3.134458 CTCCTCACACTTTCACTTCACC 58.866 50.000 0.00 0.00 0.00 4.02
2399 5001 2.771943 TCCTCACACTTTCACTTCACCT 59.228 45.455 0.00 0.00 0.00 4.00
2400 5002 3.199946 TCCTCACACTTTCACTTCACCTT 59.800 43.478 0.00 0.00 0.00 3.50
2401 5003 3.947834 CCTCACACTTTCACTTCACCTTT 59.052 43.478 0.00 0.00 0.00 3.11
2402 5004 4.399303 CCTCACACTTTCACTTCACCTTTT 59.601 41.667 0.00 0.00 0.00 2.27
2403 5005 5.449177 CCTCACACTTTCACTTCACCTTTTC 60.449 44.000 0.00 0.00 0.00 2.29
2404 5006 5.253330 TCACACTTTCACTTCACCTTTTCT 58.747 37.500 0.00 0.00 0.00 2.52
2405 5007 5.123820 TCACACTTTCACTTCACCTTTTCTG 59.876 40.000 0.00 0.00 0.00 3.02
2406 5008 4.399303 ACACTTTCACTTCACCTTTTCTGG 59.601 41.667 0.00 0.00 0.00 3.86
2407 5009 4.399303 CACTTTCACTTCACCTTTTCTGGT 59.601 41.667 0.00 0.00 41.77 4.00
2408 5010 5.016831 ACTTTCACTTCACCTTTTCTGGTT 58.983 37.500 0.00 0.00 38.45 3.67
2409 5011 5.125578 ACTTTCACTTCACCTTTTCTGGTTC 59.874 40.000 0.00 0.00 38.45 3.62
2410 5012 4.229304 TCACTTCACCTTTTCTGGTTCA 57.771 40.909 0.00 0.00 38.45 3.18
2411 5013 4.792068 TCACTTCACCTTTTCTGGTTCAT 58.208 39.130 0.00 0.00 38.45 2.57
2412 5014 4.821805 TCACTTCACCTTTTCTGGTTCATC 59.178 41.667 0.00 0.00 38.45 2.92
2413 5015 4.580167 CACTTCACCTTTTCTGGTTCATCA 59.420 41.667 0.00 0.00 38.45 3.07
2414 5016 5.242393 CACTTCACCTTTTCTGGTTCATCAT 59.758 40.000 0.00 0.00 38.45 2.45
2415 5017 5.474876 ACTTCACCTTTTCTGGTTCATCATC 59.525 40.000 0.00 0.00 38.45 2.92
2692 5294 2.187163 GGCTCCAACCCTAGTCGC 59.813 66.667 0.00 0.00 0.00 5.19
2693 5295 2.187163 GCTCCAACCCTAGTCGCC 59.813 66.667 0.00 0.00 0.00 5.54
2694 5296 2.494918 CTCCAACCCTAGTCGCCG 59.505 66.667 0.00 0.00 0.00 6.46
2695 5297 3.072468 TCCAACCCTAGTCGCCGG 61.072 66.667 0.00 0.00 0.00 6.13
2696 5298 4.157120 CCAACCCTAGTCGCCGGG 62.157 72.222 2.18 0.00 46.26 5.73
2700 5302 3.834799 CCCTAGTCGCCGGGTCAC 61.835 72.222 2.18 0.00 35.65 3.67
2701 5303 3.834799 CCTAGTCGCCGGGTCACC 61.835 72.222 2.18 0.00 0.00 4.02
2711 5313 3.003763 GGGTCACCGCTCCTTCCT 61.004 66.667 0.00 0.00 0.00 3.36
2712 5314 2.579738 GGTCACCGCTCCTTCCTC 59.420 66.667 0.00 0.00 0.00 3.71
2713 5315 1.985116 GGTCACCGCTCCTTCCTCT 60.985 63.158 0.00 0.00 0.00 3.69
2714 5316 1.513622 GTCACCGCTCCTTCCTCTC 59.486 63.158 0.00 0.00 0.00 3.20
2715 5317 1.682684 TCACCGCTCCTTCCTCTCC 60.683 63.158 0.00 0.00 0.00 3.71
2716 5318 2.364448 ACCGCTCCTTCCTCTCCC 60.364 66.667 0.00 0.00 0.00 4.30
2717 5319 2.042435 CCGCTCCTTCCTCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
2718 5320 2.131067 CCGCTCCTTCCTCTCCCTC 61.131 68.421 0.00 0.00 0.00 4.30
2719 5321 2.131067 CGCTCCTTCCTCTCCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
2720 5322 1.764454 GCTCCTTCCTCTCCCTCCC 60.764 68.421 0.00 0.00 0.00 4.30
2721 5323 1.074850 CTCCTTCCTCTCCCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
2722 5324 1.550374 TCCTTCCTCTCCCTCCCCT 60.550 63.158 0.00 0.00 0.00 4.79
2723 5325 1.074850 CCTTCCTCTCCCTCCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
2724 5326 1.074850 CTTCCTCTCCCTCCCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
2725 5327 2.937959 CTTCCTCTCCCTCCCCTCCG 62.938 70.000 0.00 0.00 0.00 4.63
2726 5328 3.756783 CCTCTCCCTCCCCTCCGT 61.757 72.222 0.00 0.00 0.00 4.69
2727 5329 2.123640 CTCTCCCTCCCCTCCGTC 60.124 72.222 0.00 0.00 0.00 4.79
2728 5330 4.124943 TCTCCCTCCCCTCCGTCG 62.125 72.222 0.00 0.00 0.00 5.12
2747 5349 3.947173 AGGCACTCATCCCTCTCG 58.053 61.111 0.00 0.00 0.00 4.04
2748 5350 2.107953 GGCACTCATCCCTCTCGC 59.892 66.667 0.00 0.00 0.00 5.03
2749 5351 2.279120 GCACTCATCCCTCTCGCG 60.279 66.667 0.00 0.00 0.00 5.87
2750 5352 2.415010 CACTCATCCCTCTCGCGG 59.585 66.667 6.13 0.00 0.00 6.46
2751 5353 2.835431 ACTCATCCCTCTCGCGGG 60.835 66.667 6.13 1.01 46.13 6.13
2752 5354 2.835431 CTCATCCCTCTCGCGGGT 60.835 66.667 5.57 0.00 44.95 5.28
2753 5355 2.833582 TCATCCCTCTCGCGGGTC 60.834 66.667 5.57 0.00 44.95 4.46
2754 5356 3.147595 CATCCCTCTCGCGGGTCA 61.148 66.667 5.57 0.00 44.95 4.02
2755 5357 2.123251 ATCCCTCTCGCGGGTCAT 60.123 61.111 5.57 0.00 44.95 3.06
2756 5358 1.153061 ATCCCTCTCGCGGGTCATA 59.847 57.895 5.57 0.00 44.95 2.15
2757 5359 0.896019 ATCCCTCTCGCGGGTCATAG 60.896 60.000 5.57 0.00 44.95 2.23
2758 5360 2.565645 CCCTCTCGCGGGTCATAGG 61.566 68.421 5.57 4.93 39.51 2.57
2759 5361 2.565645 CCTCTCGCGGGTCATAGGG 61.566 68.421 5.57 0.00 0.00 3.53
2760 5362 1.828660 CTCTCGCGGGTCATAGGGT 60.829 63.158 5.57 0.00 0.00 4.34
2761 5363 2.076622 CTCTCGCGGGTCATAGGGTG 62.077 65.000 5.57 0.00 0.00 4.61
2762 5364 2.043752 TCGCGGGTCATAGGGTGA 60.044 61.111 6.13 0.00 0.00 4.02
2769 5371 1.520666 GTCATAGGGTGACGTGGGG 59.479 63.158 0.00 0.00 46.99 4.96
2770 5372 2.189521 CATAGGGTGACGTGGGGC 59.810 66.667 0.00 0.00 0.00 5.80
2790 5392 2.997315 CCTGGCTCGAGGGTGTGA 60.997 66.667 15.58 0.00 0.00 3.58
2791 5393 2.262915 CTGGCTCGAGGGTGTGAC 59.737 66.667 15.58 0.00 0.00 3.67
2792 5394 3.302347 CTGGCTCGAGGGTGTGACC 62.302 68.421 15.58 5.28 37.60 4.02
2802 5404 3.202548 GGTGTGACCCCGATCTAGA 57.797 57.895 0.00 0.00 30.04 2.43
2803 5405 0.745468 GGTGTGACCCCGATCTAGAC 59.255 60.000 0.00 0.00 30.04 2.59
2804 5406 1.685491 GGTGTGACCCCGATCTAGACT 60.685 57.143 0.00 0.00 30.04 3.24
2805 5407 1.405821 GTGTGACCCCGATCTAGACTG 59.594 57.143 0.00 0.00 0.00 3.51
2806 5408 0.386113 GTGACCCCGATCTAGACTGC 59.614 60.000 0.00 0.00 0.00 4.40
2807 5409 1.101635 TGACCCCGATCTAGACTGCG 61.102 60.000 0.00 0.00 0.00 5.18
2808 5410 1.797211 GACCCCGATCTAGACTGCGG 61.797 65.000 18.61 18.61 43.20 5.69
2809 5411 2.336809 CCCGATCTAGACTGCGGC 59.663 66.667 19.63 0.00 42.29 6.53
2810 5412 2.050895 CCGATCTAGACTGCGGCG 60.051 66.667 15.02 0.51 37.08 6.46
2811 5413 2.050895 CGATCTAGACTGCGGCGG 60.051 66.667 9.78 7.39 0.00 6.13
2812 5414 2.355244 GATCTAGACTGCGGCGGC 60.355 66.667 9.78 9.68 40.52 6.53
2813 5415 4.271816 ATCTAGACTGCGGCGGCG 62.272 66.667 28.70 28.70 44.10 6.46
2825 5427 3.567797 GCGGCGCAGATCTGGTTC 61.568 66.667 29.21 6.79 0.00 3.62
2826 5428 2.125552 CGGCGCAGATCTGGTTCA 60.126 61.111 23.89 0.00 0.00 3.18
2827 5429 1.522355 CGGCGCAGATCTGGTTCAT 60.522 57.895 23.89 0.00 0.00 2.57
2828 5430 1.769098 CGGCGCAGATCTGGTTCATG 61.769 60.000 23.89 0.00 0.00 3.07
2829 5431 0.462581 GGCGCAGATCTGGTTCATGA 60.463 55.000 23.89 0.00 0.00 3.07
2830 5432 0.654683 GCGCAGATCTGGTTCATGAC 59.345 55.000 23.89 3.89 0.00 3.06
2831 5433 0.926155 CGCAGATCTGGTTCATGACG 59.074 55.000 23.89 12.11 0.00 4.35
2832 5434 1.293924 GCAGATCTGGTTCATGACGG 58.706 55.000 23.89 0.00 0.00 4.79
2833 5435 1.293924 CAGATCTGGTTCATGACGGC 58.706 55.000 15.38 0.00 0.00 5.68
2834 5436 0.179000 AGATCTGGTTCATGACGGCC 59.821 55.000 0.00 0.00 0.00 6.13
2835 5437 0.815615 GATCTGGTTCATGACGGCCC 60.816 60.000 0.00 0.00 0.00 5.80
2836 5438 1.561769 ATCTGGTTCATGACGGCCCA 61.562 55.000 0.00 0.00 0.00 5.36
2837 5439 1.746615 CTGGTTCATGACGGCCCAG 60.747 63.158 12.82 12.82 37.00 4.45
2838 5440 2.184020 CTGGTTCATGACGGCCCAGA 62.184 60.000 18.51 0.00 44.39 3.86
2839 5441 1.224592 GGTTCATGACGGCCCAGAT 59.775 57.895 0.00 0.00 0.00 2.90
2840 5442 1.097547 GGTTCATGACGGCCCAGATG 61.098 60.000 0.00 0.00 0.00 2.90
2841 5443 1.097547 GTTCATGACGGCCCAGATGG 61.098 60.000 0.00 0.00 37.09 3.51
2842 5444 1.271127 TTCATGACGGCCCAGATGGA 61.271 55.000 0.00 0.00 37.39 3.41
2843 5445 1.524621 CATGACGGCCCAGATGGAC 60.525 63.158 0.00 0.00 39.70 4.02
2844 5446 1.690633 ATGACGGCCCAGATGGACT 60.691 57.895 0.00 0.00 41.74 3.85
2845 5447 0.398522 ATGACGGCCCAGATGGACTA 60.399 55.000 0.00 0.00 41.74 2.59
2846 5448 1.327690 TGACGGCCCAGATGGACTAC 61.328 60.000 0.00 0.00 41.74 2.73
2847 5449 2.351336 GACGGCCCAGATGGACTACG 62.351 65.000 0.00 2.08 41.74 3.51
2848 5450 2.423898 CGGCCCAGATGGACTACGT 61.424 63.158 0.00 0.00 41.74 3.57
2849 5451 1.442148 GGCCCAGATGGACTACGTC 59.558 63.158 0.00 0.00 40.11 4.34
2850 5452 1.065928 GCCCAGATGGACTACGTCG 59.934 63.158 0.00 0.00 40.15 5.12
2851 5453 1.734137 CCCAGATGGACTACGTCGG 59.266 63.158 0.00 0.00 40.15 4.79
2852 5454 1.035932 CCCAGATGGACTACGTCGGT 61.036 60.000 0.00 0.00 40.15 4.69
2853 5455 0.100682 CCAGATGGACTACGTCGGTG 59.899 60.000 0.00 0.00 40.15 4.94
2854 5456 0.809385 CAGATGGACTACGTCGGTGT 59.191 55.000 0.00 0.00 40.15 4.16
2855 5457 0.809385 AGATGGACTACGTCGGTGTG 59.191 55.000 0.00 0.00 40.15 3.82
2856 5458 0.179145 GATGGACTACGTCGGTGTGG 60.179 60.000 0.00 0.00 32.65 4.17
2857 5459 2.126189 GGACTACGTCGGTGTGGC 60.126 66.667 0.00 0.00 32.65 5.01
2858 5460 2.503375 GACTACGTCGGTGTGGCG 60.503 66.667 0.00 0.00 0.00 5.69
2859 5461 3.958822 GACTACGTCGGTGTGGCGG 62.959 68.421 0.00 0.00 0.00 6.13
2878 5480 4.215742 CGGCCGGCGTCCTAATGA 62.216 66.667 22.54 0.00 0.00 2.57
2879 5481 2.588034 GGCCGGCGTCCTAATGAC 60.588 66.667 22.54 0.00 40.81 3.06
2887 5489 3.065575 GTCCTAATGACGGCTGTGG 57.934 57.895 0.80 0.00 33.49 4.17
2888 5490 0.249398 GTCCTAATGACGGCTGTGGT 59.751 55.000 0.80 0.00 33.49 4.16
2889 5491 0.249120 TCCTAATGACGGCTGTGGTG 59.751 55.000 0.80 0.00 0.00 4.17
2890 5492 0.249120 CCTAATGACGGCTGTGGTGA 59.751 55.000 0.80 0.00 0.00 4.02
2891 5493 1.359848 CTAATGACGGCTGTGGTGAC 58.640 55.000 0.80 0.00 0.00 3.67
2892 5494 0.682292 TAATGACGGCTGTGGTGACA 59.318 50.000 0.80 0.00 38.70 3.58
2900 5502 3.476740 CTGTGGTGACAGTGTTGGT 57.523 52.632 0.00 0.00 44.15 3.67
2901 5503 1.016627 CTGTGGTGACAGTGTTGGTG 58.983 55.000 0.00 0.00 44.15 4.17
2902 5504 0.615850 TGTGGTGACAGTGTTGGTGA 59.384 50.000 0.00 0.00 44.46 4.02
2903 5505 1.014352 GTGGTGACAGTGTTGGTGAC 58.986 55.000 0.00 0.00 44.46 3.67
2904 5506 0.461163 TGGTGACAGTGTTGGTGACG 60.461 55.000 0.00 0.00 35.01 4.35
2905 5507 1.641677 GTGACAGTGTTGGTGACGC 59.358 57.895 0.00 0.00 39.09 5.19
2906 5508 1.880796 TGACAGTGTTGGTGACGCG 60.881 57.895 3.53 3.53 43.57 6.01
2907 5509 2.587753 ACAGTGTTGGTGACGCGG 60.588 61.111 12.47 0.00 43.57 6.46
2908 5510 3.345808 CAGTGTTGGTGACGCGGG 61.346 66.667 12.47 0.00 43.57 6.13
2934 5536 4.660938 GTGGCGGCCTTCCCTGTT 62.661 66.667 21.46 0.00 0.00 3.16
2935 5537 3.897122 TGGCGGCCTTCCCTGTTT 61.897 61.111 21.46 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.466167 CCTGATTGTTGCGAGAACCAG 59.534 52.381 0.00 0.00 0.00 4.00
3 4 0.804989 CCCTGATTGTTGCGAGAACC 59.195 55.000 0.00 0.00 0.00 3.62
4 5 0.804989 CCCCTGATTGTTGCGAGAAC 59.195 55.000 0.00 0.00 0.00 3.01
5 6 0.960364 GCCCCTGATTGTTGCGAGAA 60.960 55.000 0.00 0.00 0.00 2.87
6 7 1.377202 GCCCCTGATTGTTGCGAGA 60.377 57.895 0.00 0.00 0.00 4.04
8 9 0.539438 AAAGCCCCTGATTGTTGCGA 60.539 50.000 0.00 0.00 0.00 5.10
10 11 0.109132 CGAAAGCCCCTGATTGTTGC 60.109 55.000 0.00 0.00 0.00 4.17
29 30 6.689178 TCAGAATTTTATTTCTTTGCACGC 57.311 33.333 0.00 0.00 33.69 5.34
71 72 1.737838 ATAGGCATGTGACGTGTTGG 58.262 50.000 6.66 0.00 0.00 3.77
77 78 2.789339 CGTGTAGAATAGGCATGTGACG 59.211 50.000 0.00 0.00 0.00 4.35
79 80 3.068165 CCTCGTGTAGAATAGGCATGTGA 59.932 47.826 0.00 0.00 0.00 3.58
84 85 2.307768 CCTCCTCGTGTAGAATAGGCA 58.692 52.381 0.00 0.00 0.00 4.75
90 91 2.160205 CAGTGACCTCCTCGTGTAGAA 58.840 52.381 0.00 0.00 0.00 2.10
99 100 0.987294 CCCATTGTCAGTGACCTCCT 59.013 55.000 20.43 0.00 0.00 3.69
131 132 2.806577 CGCTGATGAGGCGTGATAG 58.193 57.895 0.00 0.00 46.37 2.08
151 152 5.849357 AAACTCGTTTGAATACGCATGTA 57.151 34.783 0.00 0.00 41.16 2.29
152 153 4.742438 AAACTCGTTTGAATACGCATGT 57.258 36.364 0.00 0.00 41.16 3.21
178 179 0.248458 GTTCGGGCATGCAAATACGG 60.248 55.000 21.36 6.08 0.00 4.02
189 190 3.257935 CCATAACTTGGTTCGGGCA 57.742 52.632 0.00 0.00 40.99 5.36
203 204 5.508994 CGACATACATAGAACTGGTGCCATA 60.509 44.000 0.00 0.00 0.00 2.74
204 205 4.708177 GACATACATAGAACTGGTGCCAT 58.292 43.478 0.00 0.00 0.00 4.40
212 213 7.919621 GCCTAAACTTACGACATACATAGAACT 59.080 37.037 0.00 0.00 0.00 3.01
213 214 7.703621 TGCCTAAACTTACGACATACATAGAAC 59.296 37.037 0.00 0.00 0.00 3.01
216 217 7.201145 AGTGCCTAAACTTACGACATACATAG 58.799 38.462 0.00 0.00 0.00 2.23
217 218 7.104043 AGTGCCTAAACTTACGACATACATA 57.896 36.000 0.00 0.00 0.00 2.29
235 236 6.321181 TGACAAGAAAAGTCATTTTAGTGCCT 59.679 34.615 0.00 0.00 40.80 4.75
258 259 5.362105 ACACCACCAGTACTTAAACTTGA 57.638 39.130 0.00 0.00 0.00 3.02
269 741 5.818678 AAGAGTCAATTACACCACCAGTA 57.181 39.130 0.00 0.00 0.00 2.74
272 744 5.690865 AGAAAAGAGTCAATTACACCACCA 58.309 37.500 0.00 0.00 0.00 4.17
277 749 9.788960 AGTCAAAAAGAAAAGAGTCAATTACAC 57.211 29.630 0.00 0.00 0.00 2.90
290 762 6.819284 AGCATCAATGGAGTCAAAAAGAAAA 58.181 32.000 0.00 0.00 0.00 2.29
293 765 6.040729 TGAAAGCATCAATGGAGTCAAAAAGA 59.959 34.615 0.00 0.00 34.30 2.52
294 766 6.145048 GTGAAAGCATCAATGGAGTCAAAAAG 59.855 38.462 0.00 0.00 40.50 2.27
295 767 5.984926 GTGAAAGCATCAATGGAGTCAAAAA 59.015 36.000 0.00 0.00 40.50 1.94
296 768 5.509501 GGTGAAAGCATCAATGGAGTCAAAA 60.510 40.000 0.00 0.00 40.50 2.44
297 769 4.022068 GGTGAAAGCATCAATGGAGTCAAA 60.022 41.667 0.00 0.00 40.50 2.69
300 772 3.350833 AGGTGAAAGCATCAATGGAGTC 58.649 45.455 0.00 0.00 40.50 3.36
301 773 3.446442 AGGTGAAAGCATCAATGGAGT 57.554 42.857 0.00 0.00 40.50 3.85
302 774 5.591472 TGATTAGGTGAAAGCATCAATGGAG 59.409 40.000 0.00 0.00 40.50 3.86
303 775 5.357878 GTGATTAGGTGAAAGCATCAATGGA 59.642 40.000 0.00 0.00 40.50 3.41
304 776 5.125900 TGTGATTAGGTGAAAGCATCAATGG 59.874 40.000 0.00 0.00 40.50 3.16
305 777 6.032094 GTGTGATTAGGTGAAAGCATCAATG 58.968 40.000 0.00 0.00 40.50 2.82
306 778 5.126061 GGTGTGATTAGGTGAAAGCATCAAT 59.874 40.000 0.00 0.00 40.50 2.57
307 779 4.458989 GGTGTGATTAGGTGAAAGCATCAA 59.541 41.667 0.00 0.00 40.50 2.57
308 780 4.009675 GGTGTGATTAGGTGAAAGCATCA 58.990 43.478 0.00 0.00 36.26 3.07
309 781 3.378427 GGGTGTGATTAGGTGAAAGCATC 59.622 47.826 0.00 0.00 36.26 3.91
311 783 2.554344 GGGGTGTGATTAGGTGAAAGCA 60.554 50.000 0.00 0.00 36.26 3.91
312 784 2.092323 GGGGTGTGATTAGGTGAAAGC 58.908 52.381 0.00 0.00 0.00 3.51
313 785 3.081804 GTGGGGTGTGATTAGGTGAAAG 58.918 50.000 0.00 0.00 0.00 2.62
314 786 2.224917 GGTGGGGTGTGATTAGGTGAAA 60.225 50.000 0.00 0.00 0.00 2.69
315 787 1.353022 GGTGGGGTGTGATTAGGTGAA 59.647 52.381 0.00 0.00 0.00 3.18
316 788 0.988832 GGTGGGGTGTGATTAGGTGA 59.011 55.000 0.00 0.00 0.00 4.02
317 789 0.991920 AGGTGGGGTGTGATTAGGTG 59.008 55.000 0.00 0.00 0.00 4.00
318 790 0.991920 CAGGTGGGGTGTGATTAGGT 59.008 55.000 0.00 0.00 0.00 3.08
319 791 0.394352 GCAGGTGGGGTGTGATTAGG 60.394 60.000 0.00 0.00 0.00 2.69
320 792 0.327924 TGCAGGTGGGGTGTGATTAG 59.672 55.000 0.00 0.00 0.00 1.73
321 793 0.037590 GTGCAGGTGGGGTGTGATTA 59.962 55.000 0.00 0.00 0.00 1.75
323 795 2.156098 AGTGCAGGTGGGGTGTGAT 61.156 57.895 0.00 0.00 0.00 3.06
326 798 3.096495 ACAGTGCAGGTGGGGTGT 61.096 61.111 0.00 0.00 0.00 4.16
328 800 2.448542 AGACAGTGCAGGTGGGGT 60.449 61.111 0.00 0.00 0.00 4.95
329 801 2.348998 GAGACAGTGCAGGTGGGG 59.651 66.667 0.00 0.00 0.00 4.96
330 802 1.772819 AAGGAGACAGTGCAGGTGGG 61.773 60.000 0.00 0.00 0.00 4.61
331 803 0.321122 GAAGGAGACAGTGCAGGTGG 60.321 60.000 0.00 0.00 0.00 4.61
343 815 3.372905 AGACGAGTCGACCGAAGGAGA 62.373 57.143 26.02 0.00 43.03 3.71
344 816 1.020333 AGACGAGTCGACCGAAGGAG 61.020 60.000 26.02 8.61 43.03 3.69
345 817 1.004080 AGACGAGTCGACCGAAGGA 60.004 57.895 26.02 0.00 43.03 3.36
347 819 1.324134 GTAGAGACGAGTCGACCGAAG 59.676 57.143 26.02 12.86 34.09 3.79
348 820 1.067283 AGTAGAGACGAGTCGACCGAA 60.067 52.381 26.02 0.00 34.09 4.30
349 821 0.529833 AGTAGAGACGAGTCGACCGA 59.470 55.000 26.02 6.96 34.09 4.69
350 822 0.922717 GAGTAGAGACGAGTCGACCG 59.077 60.000 21.50 20.16 34.09 4.79
351 823 0.922717 CGAGTAGAGACGAGTCGACC 59.077 60.000 21.50 10.46 41.32 4.79
352 824 0.298411 GCGAGTAGAGACGAGTCGAC 59.702 60.000 21.50 13.89 41.32 4.20
353 825 0.805322 GGCGAGTAGAGACGAGTCGA 60.805 60.000 21.50 0.00 41.32 4.20
354 826 1.637402 GGCGAGTAGAGACGAGTCG 59.363 63.158 11.85 11.85 41.64 4.18
355 827 1.637402 CGGCGAGTAGAGACGAGTC 59.363 63.158 0.00 0.00 0.00 3.36
356 828 2.462782 GCGGCGAGTAGAGACGAGT 61.463 63.158 12.98 0.00 0.00 4.18
357 829 2.325166 GCGGCGAGTAGAGACGAG 59.675 66.667 12.98 0.00 0.00 4.18
358 830 3.200593 GGCGGCGAGTAGAGACGA 61.201 66.667 12.98 0.00 0.00 4.20
359 831 4.592936 CGGCGGCGAGTAGAGACG 62.593 72.222 29.19 0.00 0.00 4.18
360 832 4.253257 CCGGCGGCGAGTAGAGAC 62.253 72.222 34.49 0.00 0.00 3.36
378 850 2.155924 GCGACGAGGAAAAAGAAGACTG 59.844 50.000 0.00 0.00 0.00 3.51
407 879 1.045911 AGAGGGAGCGAGGGTGAATC 61.046 60.000 0.00 0.00 0.00 2.52
415 887 2.498726 GCAAGGAGAGGGAGCGAG 59.501 66.667 0.00 0.00 0.00 5.03
557 1040 1.475403 GGAGGAGATGACGAGGACAA 58.525 55.000 0.00 0.00 0.00 3.18
564 1047 4.271816 CCGGCGGAGGAGATGACG 62.272 72.222 24.41 0.00 0.00 4.35
567 1050 4.899239 GTGCCGGCGGAGGAGATG 62.899 72.222 33.44 0.00 0.00 2.90
582 1065 4.363990 ACTCACCTGCGAGCCGTG 62.364 66.667 6.18 6.18 36.42 4.94
586 1069 2.505118 GACGACTCACCTGCGAGC 60.505 66.667 0.00 0.00 36.42 5.03
587 1070 1.867919 AAGGACGACTCACCTGCGAG 61.868 60.000 0.00 0.00 36.56 5.03
666 1161 4.645136 ACGGTCATGAATTAGTAGAGCTGA 59.355 41.667 0.00 0.00 0.00 4.26
668 1163 4.038162 GGACGGTCATGAATTAGTAGAGCT 59.962 45.833 10.76 0.00 0.00 4.09
670 1165 5.282510 GTGGACGGTCATGAATTAGTAGAG 58.717 45.833 10.76 0.00 0.00 2.43
671 1166 4.201980 CGTGGACGGTCATGAATTAGTAGA 60.202 45.833 10.76 0.00 35.37 2.59
686 1181 1.752501 CTAATTCTGCGCGTGGACGG 61.753 60.000 8.43 0.00 40.23 4.79
702 1197 6.433404 CCCAGACTAGTACAGTTGAAGACTAA 59.567 42.308 0.00 0.00 37.72 2.24
703 1198 5.944599 CCCAGACTAGTACAGTTGAAGACTA 59.055 44.000 0.00 0.00 37.72 2.59
704 1199 4.767928 CCCAGACTAGTACAGTTGAAGACT 59.232 45.833 0.00 0.00 37.72 3.24
705 1200 4.618693 GCCCAGACTAGTACAGTTGAAGAC 60.619 50.000 0.00 0.00 37.72 3.01
706 1201 3.510360 GCCCAGACTAGTACAGTTGAAGA 59.490 47.826 0.00 0.00 37.72 2.87
802 1355 1.363807 GGCTTTGCCTGCGAGTTTT 59.636 52.632 0.73 0.00 46.69 2.43
857 1410 2.754658 AGGTACCTGACGGCTCCG 60.755 66.667 15.42 6.79 46.03 4.63
858 1411 2.424733 GGAGGTACCTGACGGCTCC 61.425 68.421 22.10 8.90 32.30 4.70
891 1453 0.931468 TACAGGGGCTAGGCTGACTA 59.069 55.000 16.80 0.00 0.00 2.59
892 1454 0.266152 ATACAGGGGCTAGGCTGACT 59.734 55.000 16.80 9.33 0.00 3.41
1233 2471 1.965754 GACAGGCTAGGCTCACTGGG 61.966 65.000 17.30 6.68 35.34 4.45
1278 2516 4.755123 ACACTGTCCTCTTTAAATGGTTCG 59.245 41.667 7.11 0.00 0.00 3.95
1623 2937 1.092345 GCGAGCACTTCCCCTTCATC 61.092 60.000 0.00 0.00 0.00 2.92
1631 2945 2.244651 ACACGTTGCGAGCACTTCC 61.245 57.895 0.00 0.00 0.00 3.46
1925 3278 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
1926 3279 5.469084 GCTATAGCGGGCTATTTAAAACAGT 59.531 40.000 17.49 0.00 39.65 3.55
1928 3281 5.934935 GCTATAGCGGGCTATTTAAAACA 57.065 39.130 17.49 0.00 39.65 2.83
1949 3302 1.983972 ATAGCGTGCTATAGCGAAGC 58.016 50.000 22.98 22.98 45.83 3.86
1956 3309 8.596271 TTTTGTAAATGCTATAGCGTGCTATA 57.404 30.769 20.02 17.96 45.83 1.31
1957 3310 7.307989 CCTTTTGTAAATGCTATAGCGTGCTAT 60.308 37.037 20.02 17.65 45.83 2.97
1958 3311 6.018262 CCTTTTGTAAATGCTATAGCGTGCTA 60.018 38.462 20.02 11.68 45.83 3.49
1959 3312 5.220854 CCTTTTGTAAATGCTATAGCGTGCT 60.221 40.000 20.02 12.62 45.83 4.40
1960 3313 4.970003 CCTTTTGTAAATGCTATAGCGTGC 59.030 41.667 20.02 13.30 45.83 5.34
1962 3315 6.113411 AGACCTTTTGTAAATGCTATAGCGT 58.887 36.000 19.55 16.84 45.83 5.07
1963 3316 6.604735 AGACCTTTTGTAAATGCTATAGCG 57.395 37.500 19.55 3.54 45.83 4.26
1964 3317 6.693113 GCAAGACCTTTTGTAAATGCTATAGC 59.307 38.462 18.18 18.18 42.50 2.97
1965 3318 6.907212 CGCAAGACCTTTTGTAAATGCTATAG 59.093 38.462 0.00 0.00 43.02 1.31
1966 3319 6.676943 GCGCAAGACCTTTTGTAAATGCTATA 60.677 38.462 0.30 0.00 43.02 1.31
1967 3320 5.640732 CGCAAGACCTTTTGTAAATGCTAT 58.359 37.500 0.00 0.00 43.02 2.97
1968 3321 4.614993 GCGCAAGACCTTTTGTAAATGCTA 60.615 41.667 0.30 0.00 43.02 3.49
1969 3322 3.857010 GCGCAAGACCTTTTGTAAATGCT 60.857 43.478 0.30 0.00 43.02 3.79
1970 3323 2.408368 GCGCAAGACCTTTTGTAAATGC 59.592 45.455 0.30 0.00 43.02 3.56
1971 3324 3.900941 AGCGCAAGACCTTTTGTAAATG 58.099 40.909 11.47 0.00 43.02 2.32
1973 3326 4.817464 TCTTAGCGCAAGACCTTTTGTAAA 59.183 37.500 11.47 0.00 38.39 2.01
1974 3327 4.382291 TCTTAGCGCAAGACCTTTTGTAA 58.618 39.130 11.47 0.00 38.39 2.41
1975 3328 3.994392 CTCTTAGCGCAAGACCTTTTGTA 59.006 43.478 11.47 0.00 38.39 2.41
1978 3331 3.067833 GTCTCTTAGCGCAAGACCTTTT 58.932 45.455 11.47 0.00 38.39 2.27
1979 3332 2.300437 AGTCTCTTAGCGCAAGACCTTT 59.700 45.455 21.13 7.34 40.21 3.11
1980 3333 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
1981 3334 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
1982 3335 2.371910 AAGTCTCTTAGCGCAAGACC 57.628 50.000 21.13 13.52 40.21 3.85
1984 3337 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
1986 3339 2.543777 ACCAAAGTCTCTTAGCGCAA 57.456 45.000 11.47 0.50 0.00 4.85
1987 3340 2.543777 AACCAAAGTCTCTTAGCGCA 57.456 45.000 11.47 0.00 0.00 6.09
1990 3343 6.017026 AGCAGTTTAAACCAAAGTCTCTTAGC 60.017 38.462 14.72 1.73 0.00 3.09
1991 3344 7.497925 AGCAGTTTAAACCAAAGTCTCTTAG 57.502 36.000 14.72 0.00 0.00 2.18
1992 3345 8.967664 TTAGCAGTTTAAACCAAAGTCTCTTA 57.032 30.769 14.72 0.00 0.00 2.10
1993 3346 7.875327 TTAGCAGTTTAAACCAAAGTCTCTT 57.125 32.000 14.72 0.00 0.00 2.85
1994 3347 7.875327 TTTAGCAGTTTAAACCAAAGTCTCT 57.125 32.000 14.72 3.81 0.00 3.10
1995 3348 8.349983 TCATTTAGCAGTTTAAACCAAAGTCTC 58.650 33.333 14.72 0.00 0.00 3.36
1996 3349 8.232913 TCATTTAGCAGTTTAAACCAAAGTCT 57.767 30.769 14.72 5.94 0.00 3.24
1997 3350 8.349983 TCTCATTTAGCAGTTTAAACCAAAGTC 58.650 33.333 14.72 0.00 0.00 3.01
1998 3351 8.232913 TCTCATTTAGCAGTTTAAACCAAAGT 57.767 30.769 14.72 0.00 0.00 2.66
1999 3352 9.696917 AATCTCATTTAGCAGTTTAAACCAAAG 57.303 29.630 14.72 4.32 0.00 2.77
2002 3355 8.447833 CGTAATCTCATTTAGCAGTTTAAACCA 58.552 33.333 14.72 0.00 0.00 3.67
2003 3356 7.908601 CCGTAATCTCATTTAGCAGTTTAAACC 59.091 37.037 14.72 0.68 0.00 3.27
2005 3358 8.780846 TCCGTAATCTCATTTAGCAGTTTAAA 57.219 30.769 0.00 0.00 0.00 1.52
2006 3359 8.038944 ACTCCGTAATCTCATTTAGCAGTTTAA 58.961 33.333 0.00 0.00 0.00 1.52
2008 3361 6.407202 ACTCCGTAATCTCATTTAGCAGTTT 58.593 36.000 0.00 0.00 0.00 2.66
2049 4649 8.681138 CGCATATCGTACTACAAATTTACGTTA 58.319 33.333 9.54 6.90 39.64 3.18
2050 4650 7.549649 CGCATATCGTACTACAAATTTACGTT 58.450 34.615 9.54 5.21 39.64 3.99
2068 4668 2.515926 TTCCTGAGCTGACGCATATC 57.484 50.000 0.00 0.00 39.10 1.63
2076 4676 7.571919 AGAATGAAATAGATTTCCTGAGCTGA 58.428 34.615 11.51 0.00 44.16 4.26
2103 4703 8.203485 ACATGTGTGGATTTTTAGACATTTTGT 58.797 29.630 0.00 0.00 29.49 2.83
2127 4727 4.082300 GCATGAAATACACCATCAACCACA 60.082 41.667 0.00 0.00 0.00 4.17
2128 4728 4.082300 TGCATGAAATACACCATCAACCAC 60.082 41.667 0.00 0.00 0.00 4.16
2131 4731 6.158598 ACTTTGCATGAAATACACCATCAAC 58.841 36.000 0.00 0.00 0.00 3.18
2132 4732 6.343716 ACTTTGCATGAAATACACCATCAA 57.656 33.333 0.00 0.00 0.00 2.57
2133 4733 5.981088 ACTTTGCATGAAATACACCATCA 57.019 34.783 0.00 0.00 0.00 3.07
2134 4734 6.033831 CGAAACTTTGCATGAAATACACCATC 59.966 38.462 0.00 0.00 0.00 3.51
2135 4735 5.863397 CGAAACTTTGCATGAAATACACCAT 59.137 36.000 0.00 0.00 0.00 3.55
2183 4785 7.592938 CATATACAAGGAGACAAGCAACAAAA 58.407 34.615 0.00 0.00 0.00 2.44
2185 4787 5.123820 GCATATACAAGGAGACAAGCAACAA 59.876 40.000 0.00 0.00 0.00 2.83
2190 4792 9.092876 GATATAAGCATATACAAGGAGACAAGC 57.907 37.037 0.00 0.00 0.00 4.01
2214 4816 4.706962 GTGGCTGAAGGTAGGAAAATTGAT 59.293 41.667 0.00 0.00 0.00 2.57
2215 4817 4.079253 GTGGCTGAAGGTAGGAAAATTGA 58.921 43.478 0.00 0.00 0.00 2.57
2216 4818 3.826157 TGTGGCTGAAGGTAGGAAAATTG 59.174 43.478 0.00 0.00 0.00 2.32
2217 4819 4.112634 TGTGGCTGAAGGTAGGAAAATT 57.887 40.909 0.00 0.00 0.00 1.82
2218 4820 3.806949 TGTGGCTGAAGGTAGGAAAAT 57.193 42.857 0.00 0.00 0.00 1.82
2242 4844 2.178892 GACTTAAACACGCACCGGCC 62.179 60.000 0.00 0.00 36.38 6.13
2243 4845 1.205820 GACTTAAACACGCACCGGC 59.794 57.895 0.00 0.00 0.00 6.13
2246 4848 3.685836 ACAAAGACTTAAACACGCACC 57.314 42.857 0.00 0.00 0.00 5.01
2258 4860 7.217200 TCATCAAAGCTTACAGTACAAAGACT 58.783 34.615 0.00 0.00 0.00 3.24
2270 4872 6.094719 TGACAATGCATTCATCAAAGCTTAC 58.905 36.000 16.92 0.00 31.27 2.34
2308 4910 7.225931 GGATAATTACTGTTGAGCCGAATGTTA 59.774 37.037 0.00 0.00 0.00 2.41
2316 4918 6.122964 AGAAAGGGATAATTACTGTTGAGCC 58.877 40.000 0.00 0.00 0.00 4.70
2374 4976 4.876107 GTGAAGTGAAAGTGTGAGGAGAAA 59.124 41.667 0.00 0.00 0.00 2.52
2675 5277 2.187163 GCGACTAGGGTTGGAGCC 59.813 66.667 0.00 0.00 35.59 4.70
2676 5278 2.187163 GGCGACTAGGGTTGGAGC 59.813 66.667 0.00 0.00 0.00 4.70
2677 5279 2.494918 CGGCGACTAGGGTTGGAG 59.505 66.667 0.00 0.00 0.00 3.86
2678 5280 3.072468 CCGGCGACTAGGGTTGGA 61.072 66.667 9.30 0.00 0.00 3.53
2679 5281 4.157120 CCCGGCGACTAGGGTTGG 62.157 72.222 9.30 0.00 42.67 3.77
2684 5286 3.834799 GGTGACCCGGCGACTAGG 61.835 72.222 9.30 2.75 0.00 3.02
2694 5296 3.003763 AGGAAGGAGCGGTGACCC 61.004 66.667 0.00 0.00 0.00 4.46
2695 5297 1.950973 GAGAGGAAGGAGCGGTGACC 61.951 65.000 0.00 0.00 0.00 4.02
2696 5298 1.513622 GAGAGGAAGGAGCGGTGAC 59.486 63.158 0.00 0.00 0.00 3.67
2697 5299 1.682684 GGAGAGGAAGGAGCGGTGA 60.683 63.158 0.00 0.00 0.00 4.02
2698 5300 2.726351 GGGAGAGGAAGGAGCGGTG 61.726 68.421 0.00 0.00 0.00 4.94
2699 5301 2.364448 GGGAGAGGAAGGAGCGGT 60.364 66.667 0.00 0.00 0.00 5.68
2700 5302 2.042435 AGGGAGAGGAAGGAGCGG 60.042 66.667 0.00 0.00 0.00 5.52
2701 5303 2.131067 GGAGGGAGAGGAAGGAGCG 61.131 68.421 0.00 0.00 0.00 5.03
2702 5304 1.764454 GGGAGGGAGAGGAAGGAGC 60.764 68.421 0.00 0.00 0.00 4.70
2703 5305 1.074850 GGGGAGGGAGAGGAAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
2704 5306 1.550374 AGGGGAGGGAGAGGAAGGA 60.550 63.158 0.00 0.00 0.00 3.36
2705 5307 1.074850 GAGGGGAGGGAGAGGAAGG 60.075 68.421 0.00 0.00 0.00 3.46
2706 5308 1.074850 GGAGGGGAGGGAGAGGAAG 60.075 68.421 0.00 0.00 0.00 3.46
2707 5309 3.010226 CGGAGGGGAGGGAGAGGAA 62.010 68.421 0.00 0.00 0.00 3.36
2708 5310 3.430497 CGGAGGGGAGGGAGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
2709 5311 3.742248 GACGGAGGGGAGGGAGAGG 62.742 73.684 0.00 0.00 0.00 3.69
2710 5312 2.123640 GACGGAGGGGAGGGAGAG 60.124 72.222 0.00 0.00 0.00 3.20
2711 5313 4.124943 CGACGGAGGGGAGGGAGA 62.125 72.222 0.00 0.00 0.00 3.71
2722 5324 2.362503 ATGAGTGCCTCCGACGGA 60.363 61.111 17.28 17.28 0.00 4.69
2723 5325 2.105128 GATGAGTGCCTCCGACGG 59.895 66.667 7.84 7.84 0.00 4.79
2724 5326 2.105128 GGATGAGTGCCTCCGACG 59.895 66.667 0.00 0.00 0.00 5.12
2725 5327 2.060980 AGGGATGAGTGCCTCCGAC 61.061 63.158 0.50 0.00 43.65 4.79
2726 5328 2.364560 AGGGATGAGTGCCTCCGA 59.635 61.111 0.50 0.00 43.65 4.55
2731 5333 2.107953 GCGAGAGGGATGAGTGCC 59.892 66.667 0.00 0.00 35.78 5.01
2741 5343 2.565645 CCCTATGACCCGCGAGAGG 61.566 68.421 8.23 2.89 0.00 3.69
2742 5344 1.828660 ACCCTATGACCCGCGAGAG 60.829 63.158 8.23 0.00 0.00 3.20
2743 5345 2.125326 CACCCTATGACCCGCGAGA 61.125 63.158 8.23 0.00 0.00 4.04
2744 5346 2.125326 TCACCCTATGACCCGCGAG 61.125 63.158 8.23 0.00 29.99 5.03
2745 5347 2.043752 TCACCCTATGACCCGCGA 60.044 61.111 8.23 0.00 29.99 5.87
2752 5354 2.363975 GCCCCACGTCACCCTATGA 61.364 63.158 0.00 0.00 33.79 2.15
2753 5355 2.189521 GCCCCACGTCACCCTATG 59.810 66.667 0.00 0.00 0.00 2.23
2754 5356 3.467226 CGCCCCACGTCACCCTAT 61.467 66.667 0.00 0.00 36.87 2.57
2773 5375 2.997315 TCACACCCTCGAGCCAGG 60.997 66.667 6.99 5.72 0.00 4.45
2774 5376 2.262915 GTCACACCCTCGAGCCAG 59.737 66.667 6.99 0.00 0.00 4.85
2775 5377 3.311110 GGTCACACCCTCGAGCCA 61.311 66.667 6.99 0.00 30.04 4.75
2784 5386 0.745468 GTCTAGATCGGGGTCACACC 59.255 60.000 0.00 0.00 37.60 4.16
2785 5387 1.405821 CAGTCTAGATCGGGGTCACAC 59.594 57.143 0.00 0.00 0.00 3.82
2786 5388 1.763968 CAGTCTAGATCGGGGTCACA 58.236 55.000 0.00 0.00 0.00 3.58
2787 5389 0.386113 GCAGTCTAGATCGGGGTCAC 59.614 60.000 0.00 0.00 0.00 3.67
2788 5390 1.101635 CGCAGTCTAGATCGGGGTCA 61.102 60.000 0.00 0.00 0.00 4.02
2789 5391 1.655329 CGCAGTCTAGATCGGGGTC 59.345 63.158 0.00 0.00 0.00 4.46
2790 5392 1.828660 CCGCAGTCTAGATCGGGGT 60.829 63.158 17.88 0.00 38.35 4.95
2791 5393 3.043419 CCGCAGTCTAGATCGGGG 58.957 66.667 17.88 14.85 38.35 5.73
2792 5394 2.336809 GCCGCAGTCTAGATCGGG 59.663 66.667 23.36 14.14 41.96 5.14
2793 5395 2.050895 CGCCGCAGTCTAGATCGG 60.051 66.667 20.07 20.07 44.29 4.18
2794 5396 2.050895 CCGCCGCAGTCTAGATCG 60.051 66.667 0.00 0.29 0.00 3.69
2795 5397 2.355244 GCCGCCGCAGTCTAGATC 60.355 66.667 0.00 0.00 34.03 2.75
2796 5398 4.271816 CGCCGCCGCAGTCTAGAT 62.272 66.667 0.00 0.00 34.03 1.98
2808 5410 3.567797 GAACCAGATCTGCGCCGC 61.568 66.667 17.76 0.00 0.00 6.53
2809 5411 1.522355 ATGAACCAGATCTGCGCCG 60.522 57.895 17.76 6.18 0.00 6.46
2810 5412 0.462581 TCATGAACCAGATCTGCGCC 60.463 55.000 17.76 8.17 0.00 6.53
2811 5413 0.654683 GTCATGAACCAGATCTGCGC 59.345 55.000 17.76 0.00 0.00 6.09
2812 5414 0.926155 CGTCATGAACCAGATCTGCG 59.074 55.000 17.76 12.75 0.00 5.18
2813 5415 1.293924 CCGTCATGAACCAGATCTGC 58.706 55.000 17.76 4.54 0.00 4.26
2814 5416 1.293924 GCCGTCATGAACCAGATCTG 58.706 55.000 16.24 16.24 0.00 2.90
2815 5417 0.179000 GGCCGTCATGAACCAGATCT 59.821 55.000 0.00 0.00 0.00 2.75
2816 5418 0.815615 GGGCCGTCATGAACCAGATC 60.816 60.000 0.00 0.00 0.00 2.75
2817 5419 1.224592 GGGCCGTCATGAACCAGAT 59.775 57.895 0.00 0.00 0.00 2.90
2818 5420 2.220586 TGGGCCGTCATGAACCAGA 61.221 57.895 0.00 0.00 0.00 3.86
2819 5421 1.746615 CTGGGCCGTCATGAACCAG 60.747 63.158 17.37 17.37 42.28 4.00
2820 5422 1.561769 ATCTGGGCCGTCATGAACCA 61.562 55.000 0.00 3.23 0.00 3.67
2821 5423 1.097547 CATCTGGGCCGTCATGAACC 61.098 60.000 0.00 0.00 0.00 3.62
2822 5424 1.097547 CCATCTGGGCCGTCATGAAC 61.098 60.000 0.00 0.00 0.00 3.18
2823 5425 1.224315 CCATCTGGGCCGTCATGAA 59.776 57.895 0.00 0.00 0.00 2.57
2824 5426 1.688884 TCCATCTGGGCCGTCATGA 60.689 57.895 10.01 0.00 36.21 3.07
2825 5427 1.524621 GTCCATCTGGGCCGTCATG 60.525 63.158 0.00 0.22 36.21 3.07
2826 5428 0.398522 TAGTCCATCTGGGCCGTCAT 60.399 55.000 0.00 0.00 41.83 3.06
2827 5429 1.001120 TAGTCCATCTGGGCCGTCA 59.999 57.895 0.00 0.00 41.83 4.35
2828 5430 1.442148 GTAGTCCATCTGGGCCGTC 59.558 63.158 0.00 0.00 41.83 4.79
2829 5431 2.423898 CGTAGTCCATCTGGGCCGT 61.424 63.158 0.00 0.00 41.83 5.68
2830 5432 2.417516 CGTAGTCCATCTGGGCCG 59.582 66.667 0.00 0.00 41.83 6.13
2831 5433 3.630289 ACGTAGTCCATCTGGGCC 58.370 61.111 0.00 0.00 41.83 5.80
2861 5463 4.215742 TCATTAGGACGCCGGCCG 62.216 66.667 23.46 21.04 44.21 6.13
2862 5464 2.588034 GTCATTAGGACGCCGGCC 60.588 66.667 23.46 0.00 36.65 6.13
2869 5471 0.249398 ACCACAGCCGTCATTAGGAC 59.751 55.000 0.00 0.00 43.36 3.85
2870 5472 0.249120 CACCACAGCCGTCATTAGGA 59.751 55.000 0.00 0.00 0.00 2.94
2871 5473 0.249120 TCACCACAGCCGTCATTAGG 59.751 55.000 0.00 0.00 0.00 2.69
2872 5474 1.337728 TGTCACCACAGCCGTCATTAG 60.338 52.381 0.00 0.00 0.00 1.73
2873 5475 0.682292 TGTCACCACAGCCGTCATTA 59.318 50.000 0.00 0.00 0.00 1.90
2874 5476 0.603707 CTGTCACCACAGCCGTCATT 60.604 55.000 0.00 0.00 43.77 2.57
2875 5477 1.004560 CTGTCACCACAGCCGTCAT 60.005 57.895 0.00 0.00 43.77 3.06
2876 5478 2.421314 CTGTCACCACAGCCGTCA 59.579 61.111 0.00 0.00 43.77 4.35
2883 5485 0.615850 TCACCAACACTGTCACCACA 59.384 50.000 0.00 0.00 0.00 4.17
2884 5486 1.014352 GTCACCAACACTGTCACCAC 58.986 55.000 0.00 0.00 0.00 4.16
2885 5487 0.461163 CGTCACCAACACTGTCACCA 60.461 55.000 0.00 0.00 0.00 4.17
2886 5488 1.772063 GCGTCACCAACACTGTCACC 61.772 60.000 0.00 0.00 0.00 4.02
2887 5489 1.641677 GCGTCACCAACACTGTCAC 59.358 57.895 0.00 0.00 0.00 3.67
2888 5490 1.880796 CGCGTCACCAACACTGTCA 60.881 57.895 0.00 0.00 0.00 3.58
2889 5491 2.594962 CCGCGTCACCAACACTGTC 61.595 63.158 4.92 0.00 0.00 3.51
2890 5492 2.587753 CCGCGTCACCAACACTGT 60.588 61.111 4.92 0.00 0.00 3.55
2891 5493 3.345808 CCCGCGTCACCAACACTG 61.346 66.667 4.92 0.00 0.00 3.66
2917 5519 4.660938 AACAGGGAAGGCCGCCAC 62.661 66.667 13.15 5.09 33.83 5.01
2918 5520 3.897122 AAACAGGGAAGGCCGCCA 61.897 61.111 13.15 0.00 33.83 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.