Multiple sequence alignment - TraesCS7B01G373400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G373400 chr7B 100.000 6360 0 0 1 6360 639092157 639085798 0.000000e+00 11745.0
1 TraesCS7B01G373400 chr7B 78.659 2357 362 82 1836 4111 704152878 704155174 0.000000e+00 1435.0
2 TraesCS7B01G373400 chr7B 78.623 2353 364 79 1836 4111 704088038 704090328 0.000000e+00 1430.0
3 TraesCS7B01G373400 chr7B 80.313 1021 104 45 5405 6360 704091699 704092687 0.000000e+00 682.0
4 TraesCS7B01G373400 chr7B 80.176 1024 103 48 5405 6360 704156537 704157528 0.000000e+00 675.0
5 TraesCS7B01G373400 chr7B 84.389 679 83 15 4266 4925 704090315 704090989 0.000000e+00 645.0
6 TraesCS7B01G373400 chr7B 82.941 680 85 21 4266 4925 704155161 704155829 9.190000e-163 584.0
7 TraesCS7B01G373400 chr7B 82.000 400 42 12 5008 5394 704155980 704156362 4.790000e-81 313.0
8 TraesCS7B01G373400 chr7B 83.143 350 42 11 5008 5345 704091140 704091484 2.880000e-78 303.0
9 TraesCS7B01G373400 chr7B 73.096 788 137 47 1092 1826 704152067 704152832 1.800000e-50 211.0
10 TraesCS7B01G373400 chr7B 72.691 758 134 45 1121 1826 704087256 704087992 1.090000e-42 185.0
11 TraesCS7B01G373400 chr7D 92.471 3068 191 19 1066 4118 576340892 576337850 0.000000e+00 4349.0
12 TraesCS7B01G373400 chr7D 94.536 1153 46 9 4266 5405 576337870 576336722 0.000000e+00 1764.0
13 TraesCS7B01G373400 chr7D 94.375 960 51 2 5403 6360 576336666 576335708 0.000000e+00 1471.0
14 TraesCS7B01G373400 chr7D 84.793 434 33 15 120 535 576342139 576341721 7.680000e-109 405.0
15 TraesCS7B01G373400 chr7D 92.308 247 14 3 863 1109 576341135 576340894 4.720000e-91 346.0
16 TraesCS7B01G373400 chr7D 98.052 154 3 0 4118 4271 567733403 567733250 1.050000e-67 268.0
17 TraesCS7B01G373400 chr7D 92.857 84 2 2 784 863 576341552 576341469 1.120000e-22 119.0
18 TraesCS7B01G373400 chr7A 93.554 2141 122 11 1986 4118 667481050 667478918 0.000000e+00 3175.0
19 TraesCS7B01G373400 chr7A 78.602 2346 364 71 1836 4108 705135855 705138135 0.000000e+00 1424.0
20 TraesCS7B01G373400 chr7A 91.934 967 62 10 1021 1985 667483185 667482233 0.000000e+00 1339.0
21 TraesCS7B01G373400 chr7A 95.366 669 23 5 4266 4927 667478938 667478271 0.000000e+00 1057.0
22 TraesCS7B01G373400 chr7A 93.206 574 34 3 5789 6360 667478254 667477684 0.000000e+00 839.0
23 TraesCS7B01G373400 chr7A 85.084 657 78 15 4284 4925 705138136 705138787 0.000000e+00 652.0
24 TraesCS7B01G373400 chr7A 92.011 363 22 4 784 1142 667483480 667483121 2.650000e-138 503.0
25 TraesCS7B01G373400 chr7A 82.038 579 53 23 5405 5939 705139498 705140069 4.520000e-121 446.0
26 TraesCS7B01G373400 chr7A 83.621 348 38 12 5011 5345 705138942 705139283 6.190000e-80 309.0
27 TraesCS7B01G373400 chr7A 93.720 207 8 2 558 764 667483665 667483464 8.010000e-79 305.0
28 TraesCS7B01G373400 chr7A 99.342 152 1 0 4118 4269 83784986 83784835 6.280000e-70 276.0
29 TraesCS7B01G373400 chr7A 82.323 198 17 13 1 191 667484184 667483998 8.540000e-34 156.0
30 TraesCS7B01G373400 chr7A 92.308 65 5 0 1021 1085 667483128 667483064 6.790000e-15 93.5
31 TraesCS7B01G373400 chr3D 87.265 1170 100 30 4266 5396 181109353 181108194 0.000000e+00 1290.0
32 TraesCS7B01G373400 chr3D 84.189 740 78 15 5628 6360 181107829 181107122 0.000000e+00 682.0
33 TraesCS7B01G373400 chr3D 98.693 153 2 0 4118 4270 422517642 422517794 8.120000e-69 272.0
34 TraesCS7B01G373400 chr3A 86.667 915 90 23 4498 5396 227918108 227919006 0.000000e+00 985.0
35 TraesCS7B01G373400 chr3A 84.906 742 83 12 5625 6360 227919284 227920002 0.000000e+00 723.0
36 TraesCS7B01G373400 chr3A 96.795 156 5 0 4117 4272 602021494 602021339 1.760000e-65 261.0
37 TraesCS7B01G373400 chr3A 87.013 154 17 2 5609 5762 14856268 14856418 3.050000e-38 171.0
38 TraesCS7B01G373400 chr3A 83.616 177 28 1 3943 4119 227917557 227917732 1.420000e-36 165.0
39 TraesCS7B01G373400 chr3A 83.929 112 17 1 5640 5750 227916222 227916333 8.720000e-19 106.0
40 TraesCS7B01G373400 chr5B 99.342 152 1 0 4118 4269 574956597 574956446 6.280000e-70 276.0
41 TraesCS7B01G373400 chr2B 99.342 152 1 0 4118 4269 660461574 660461423 6.280000e-70 276.0
42 TraesCS7B01G373400 chr4D 98.684 152 2 0 4118 4269 482703473 482703624 2.920000e-68 270.0
43 TraesCS7B01G373400 chr4A 98.684 152 2 0 4118 4269 475420676 475420525 2.920000e-68 270.0
44 TraesCS7B01G373400 chr2A 98.065 155 3 0 4117 4271 642914049 642913895 2.920000e-68 270.0
45 TraesCS7B01G373400 chr1D 96.875 32 0 1 5640 5670 480403723 480403754 1.200000e-02 52.8
46 TraesCS7B01G373400 chr1A 96.875 32 0 1 5640 5670 576667197 576667228 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G373400 chr7B 639085798 639092157 6359 True 11745.0000 11745 100.00000 1 6360 1 chr7B.!!$R1 6359
1 TraesCS7B01G373400 chr7B 704087256 704092687 5431 False 649.0000 1430 79.83180 1121 6360 5 chr7B.!!$F1 5239
2 TraesCS7B01G373400 chr7B 704152067 704157528 5461 False 643.6000 1435 79.37440 1092 6360 5 chr7B.!!$F2 5268
3 TraesCS7B01G373400 chr7D 576335708 576342139 6431 True 1409.0000 4349 91.89000 120 6360 6 chr7D.!!$R2 6240
4 TraesCS7B01G373400 chr7A 667477684 667484184 6500 True 933.4375 3175 91.80275 1 6360 8 chr7A.!!$R2 6359
5 TraesCS7B01G373400 chr7A 705135855 705140069 4214 False 707.7500 1424 82.33625 1836 5939 4 chr7A.!!$F1 4103
6 TraesCS7B01G373400 chr3D 181107122 181109353 2231 True 986.0000 1290 85.72700 4266 6360 2 chr3D.!!$R1 2094
7 TraesCS7B01G373400 chr3A 227916222 227920002 3780 False 494.7500 985 84.77950 3943 6360 4 chr3A.!!$F2 2417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 488 0.179100 CAGATCAGGAACGGCGACAT 60.179 55.000 16.62 1.38 0.00 3.06 F
493 551 0.329596 CCTCTTGTTTCCTCCCCTGG 59.670 60.000 0.00 0.00 0.00 4.45 F
494 552 0.329596 CTCTTGTTTCCTCCCCTGGG 59.670 60.000 5.50 5.50 0.00 4.45 F
495 553 0.402861 TCTTGTTTCCTCCCCTGGGT 60.403 55.000 12.71 0.00 36.47 4.51 F
1291 1743 0.535335 TCACGTACAGCAATCCCTCC 59.465 55.000 0.00 0.00 0.00 4.30 F
2083 3819 0.822164 CCGTGGAGATTCCCGTTACT 59.178 55.000 0.00 0.00 35.03 2.24 F
2804 4569 1.064017 TCTAATTGCGGGGAAGCCAAT 60.064 47.619 0.00 0.00 36.02 3.16 F
3610 5413 0.392193 AGATCTTGTCAGCCGCCTTG 60.392 55.000 0.00 0.00 0.00 3.61 F
4536 6547 0.322648 TCAGGTGTCAGCTGATGGTG 59.677 55.000 26.87 14.75 46.53 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 2377 0.250513 GAACCCGAAGAGCATCCTGT 59.749 55.000 0.00 0.00 33.66 4.00 R
2145 3881 1.002888 ACATTGAGTGAGAGCCCACTG 59.997 52.381 8.49 0.00 46.45 3.66 R
2184 3924 2.743553 AGCTCATGCAAATTAGGCCTT 58.256 42.857 12.58 0.00 42.74 4.35 R
2273 4017 4.208253 CGTGGTGGTTAAATCTGCAAAAAC 59.792 41.667 0.00 0.00 0.00 2.43 R
2804 4569 2.270850 GGAGGTATGTTGGGCGCA 59.729 61.111 10.83 0.00 0.00 6.09 R
3490 5284 0.390603 CTGGGAACGTTACCGCATCA 60.391 55.000 24.41 5.69 37.70 3.07 R
4145 5964 0.034896 GGCTGTTTCCAGGACTCGAA 59.965 55.000 0.00 0.00 39.22 3.71 R
5334 7450 0.108615 AGGTCTCTGTCCATTTCGCG 60.109 55.000 0.00 0.00 0.00 5.87 R
5503 7953 1.297968 TCCTTGGATGGCAGATTCCA 58.702 50.000 4.20 4.20 40.24 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 2.712057 CGCTGCATTTCTTCTTGGTT 57.288 45.000 0.00 0.00 0.00 3.67
21 23 3.383761 CGCTGCATTTCTTCTTGGTTTT 58.616 40.909 0.00 0.00 0.00 2.43
22 24 3.426525 CGCTGCATTTCTTCTTGGTTTTC 59.573 43.478 0.00 0.00 0.00 2.29
24 26 4.683320 GCTGCATTTCTTCTTGGTTTTCTC 59.317 41.667 0.00 0.00 0.00 2.87
27 29 5.149977 GCATTTCTTCTTGGTTTTCTCTCG 58.850 41.667 0.00 0.00 0.00 4.04
28 30 5.278022 GCATTTCTTCTTGGTTTTCTCTCGT 60.278 40.000 0.00 0.00 0.00 4.18
30 32 4.939052 TCTTCTTGGTTTTCTCTCGTCT 57.061 40.909 0.00 0.00 0.00 4.18
33 35 4.244425 TCTTGGTTTTCTCTCGTCTCTG 57.756 45.455 0.00 0.00 0.00 3.35
35 37 1.335964 TGGTTTTCTCTCGTCTCTGCG 60.336 52.381 0.00 0.00 0.00 5.18
41 47 4.127040 CTCGTCTCTGCGCCTGCT 62.127 66.667 4.18 0.00 43.34 4.24
45 51 1.449246 GTCTCTGCGCCTGCTTGAT 60.449 57.895 4.18 0.00 43.34 2.57
56 62 2.816087 GCCTGCTTGATTCTGTTTCTGA 59.184 45.455 0.00 0.00 0.00 3.27
71 77 6.096987 TCTGTTTCTGAGCTAGTTTCGGATAT 59.903 38.462 8.23 0.00 30.48 1.63
76 82 6.640518 TCTGAGCTAGTTTCGGATATTGTTT 58.359 36.000 0.00 0.00 0.00 2.83
77 83 6.757010 TCTGAGCTAGTTTCGGATATTGTTTC 59.243 38.462 0.00 0.00 0.00 2.78
78 84 6.403049 TGAGCTAGTTTCGGATATTGTTTCA 58.597 36.000 0.00 0.00 0.00 2.69
79 85 6.312918 TGAGCTAGTTTCGGATATTGTTTCAC 59.687 38.462 0.00 0.00 0.00 3.18
80 86 5.291128 AGCTAGTTTCGGATATTGTTTCACG 59.709 40.000 0.00 0.00 0.00 4.35
81 87 4.939509 AGTTTCGGATATTGTTTCACGG 57.060 40.909 0.00 0.00 0.00 4.94
83 89 4.153475 AGTTTCGGATATTGTTTCACGGTG 59.847 41.667 0.56 0.56 0.00 4.94
85 91 4.453177 TCGGATATTGTTTCACGGTGTA 57.547 40.909 8.17 0.00 0.00 2.90
86 92 5.013568 TCGGATATTGTTTCACGGTGTAT 57.986 39.130 8.17 0.00 0.00 2.29
87 93 5.421277 TCGGATATTGTTTCACGGTGTATT 58.579 37.500 8.17 0.00 0.00 1.89
88 94 5.875910 TCGGATATTGTTTCACGGTGTATTT 59.124 36.000 8.17 0.00 0.00 1.40
89 95 7.040494 TCGGATATTGTTTCACGGTGTATTTA 58.960 34.615 8.17 0.00 0.00 1.40
90 96 7.010367 TCGGATATTGTTTCACGGTGTATTTAC 59.990 37.037 8.17 1.77 0.00 2.01
91 97 7.010738 CGGATATTGTTTCACGGTGTATTTACT 59.989 37.037 8.17 0.00 0.00 2.24
92 98 8.671028 GGATATTGTTTCACGGTGTATTTACTT 58.329 33.333 8.17 0.00 0.00 2.24
95 101 7.556733 TTGTTTCACGGTGTATTTACTTTCT 57.443 32.000 8.17 0.00 0.00 2.52
96 102 7.181143 TGTTTCACGGTGTATTTACTTTCTC 57.819 36.000 8.17 0.00 0.00 2.87
113 119 2.127383 CGCCGTTTTCTTGCCGAC 60.127 61.111 0.00 0.00 0.00 4.79
217 223 1.361993 GCTCGATCCATCTGTCGCT 59.638 57.895 0.00 0.00 37.74 4.93
218 224 0.938637 GCTCGATCCATCTGTCGCTG 60.939 60.000 0.00 0.00 37.74 5.18
219 225 0.938637 CTCGATCCATCTGTCGCTGC 60.939 60.000 0.00 0.00 37.74 5.25
221 227 0.599466 CGATCCATCTGTCGCTGCAT 60.599 55.000 0.00 0.00 0.00 3.96
248 254 1.130749 AGTTCGTCTTCTCGATGGTCG 59.869 52.381 0.00 0.00 42.10 4.79
268 274 1.000506 GGCCGTGCGAATCTAGGATTA 59.999 52.381 0.00 0.00 0.00 1.75
291 300 6.655078 ATGGCTTTTAACTTTGTGAGTGAT 57.345 33.333 0.00 0.00 39.00 3.06
313 325 3.987868 TGAGTGAGTCACTAATGTTTCGC 59.012 43.478 25.53 10.41 45.44 4.70
315 327 3.006967 AGTGAGTCACTAATGTTTCGCCT 59.993 43.478 24.36 0.00 43.46 5.52
316 328 4.219944 AGTGAGTCACTAATGTTTCGCCTA 59.780 41.667 24.36 0.00 43.46 3.93
318 330 5.581085 GTGAGTCACTAATGTTTCGCCTATT 59.419 40.000 16.26 0.00 0.00 1.73
319 331 5.810587 TGAGTCACTAATGTTTCGCCTATTC 59.189 40.000 0.00 0.00 0.00 1.75
320 332 5.730550 AGTCACTAATGTTTCGCCTATTCA 58.269 37.500 0.00 0.00 0.00 2.57
357 414 2.098117 GGTGCAGAAAGTATGGTGATGC 59.902 50.000 0.00 0.00 0.00 3.91
396 454 2.091541 GGGATGTATGGTGGTGTTGTG 58.908 52.381 0.00 0.00 0.00 3.33
397 455 2.554344 GGGATGTATGGTGGTGTTGTGT 60.554 50.000 0.00 0.00 0.00 3.72
398 456 3.153919 GGATGTATGGTGGTGTTGTGTT 58.846 45.455 0.00 0.00 0.00 3.32
430 488 0.179100 CAGATCAGGAACGGCGACAT 60.179 55.000 16.62 1.38 0.00 3.06
471 529 8.487313 TTGTATGCAAATTACTACGAAGTGAT 57.513 30.769 0.00 0.00 45.73 3.06
479 537 8.936864 CAAATTACTACGAAGTGATTTCCTCTT 58.063 33.333 5.57 0.00 44.31 2.85
493 551 0.329596 CCTCTTGTTTCCTCCCCTGG 59.670 60.000 0.00 0.00 0.00 4.45
494 552 0.329596 CTCTTGTTTCCTCCCCTGGG 59.670 60.000 5.50 5.50 0.00 4.45
495 553 0.402861 TCTTGTTTCCTCCCCTGGGT 60.403 55.000 12.71 0.00 36.47 4.51
522 581 2.320805 CACCGAATGCTGTCAACTTG 57.679 50.000 0.00 0.00 0.00 3.16
525 584 1.069022 CCGAATGCTGTCAACTTGTGG 60.069 52.381 0.00 0.00 0.00 4.17
526 585 1.603802 CGAATGCTGTCAACTTGTGGT 59.396 47.619 0.00 0.00 0.00 4.16
530 589 1.340502 TGCTGTCAACTTGTGGTTCCA 60.341 47.619 0.00 0.00 35.74 3.53
531 590 1.956477 GCTGTCAACTTGTGGTTCCAT 59.044 47.619 0.00 0.00 35.74 3.41
532 591 3.146066 GCTGTCAACTTGTGGTTCCATA 58.854 45.455 0.00 0.00 35.74 2.74
533 592 3.758554 GCTGTCAACTTGTGGTTCCATAT 59.241 43.478 0.00 0.00 35.74 1.78
534 593 4.142600 GCTGTCAACTTGTGGTTCCATATC 60.143 45.833 0.00 0.00 35.74 1.63
535 594 5.241403 TGTCAACTTGTGGTTCCATATCT 57.759 39.130 0.00 0.00 35.74 1.98
536 595 5.630121 TGTCAACTTGTGGTTCCATATCTT 58.370 37.500 0.00 0.00 35.74 2.40
537 596 5.705441 TGTCAACTTGTGGTTCCATATCTTC 59.295 40.000 0.00 0.00 35.74 2.87
539 598 6.431234 GTCAACTTGTGGTTCCATATCTTCTT 59.569 38.462 0.00 0.00 35.74 2.52
540 599 7.004086 TCAACTTGTGGTTCCATATCTTCTTT 58.996 34.615 0.00 0.00 35.74 2.52
542 601 7.839680 ACTTGTGGTTCCATATCTTCTTTTT 57.160 32.000 0.00 0.00 0.00 1.94
571 630 4.602995 TGCGAAATAACTTGTGGTTTCAC 58.397 39.130 0.00 0.00 43.87 3.18
589 648 3.459828 TCACATCAATAGAACTGGGGGA 58.540 45.455 0.00 0.00 0.00 4.81
765 825 7.202093 CCCTAACTTCATTTCCCCTTTCTTTTT 60.202 37.037 0.00 0.00 0.00 1.94
816 876 6.095440 CCTTTCTTGGGAAACATACCATGTAG 59.905 42.308 0.00 0.00 44.07 2.74
874 1269 7.982761 TGCATCCTTTTTATCAATTTGCTTT 57.017 28.000 0.00 0.00 0.00 3.51
875 1270 8.393671 TGCATCCTTTTTATCAATTTGCTTTT 57.606 26.923 0.00 0.00 0.00 2.27
913 1308 1.290203 ATTAATCGTGGAGCAGTGCG 58.710 50.000 10.00 0.00 0.00 5.34
1077 1472 4.162690 GGCGAGGGCGATGAACCT 62.163 66.667 0.00 0.00 41.24 3.50
1078 1473 2.892425 GCGAGGGCGATGAACCTG 60.892 66.667 0.00 0.00 40.82 4.00
1101 1553 2.322355 AGGATGATTCCAGCAAGTCG 57.678 50.000 0.00 0.00 45.30 4.18
1114 1566 2.629656 AAGTCGCCAATGCTGCACC 61.630 57.895 3.57 0.00 34.43 5.01
1291 1743 0.535335 TCACGTACAGCAATCCCTCC 59.465 55.000 0.00 0.00 0.00 4.30
1401 1881 3.489398 CCACAGGTAGATCTCAAGTACGC 60.489 52.174 0.00 0.00 0.00 4.42
1456 1936 1.353694 AGGAAAGTGATGAGGCAGCTT 59.646 47.619 0.00 0.00 0.00 3.74
1561 2041 5.068460 TCCTTTTACCACCAATGTGTTTGAG 59.932 40.000 0.00 0.00 41.09 3.02
1565 2045 3.904717 ACCACCAATGTGTTTGAGGTTA 58.095 40.909 0.00 0.00 39.19 2.85
1568 2048 4.082245 CCACCAATGTGTTTGAGGTTATCC 60.082 45.833 0.00 0.00 41.09 2.59
1573 2056 4.447138 TGTGTTTGAGGTTATCCTGGTT 57.553 40.909 0.00 0.00 45.24 3.67
1586 2069 1.064463 TCCTGGTTGATGCTTCATCCC 60.064 52.381 21.05 15.70 39.90 3.85
1652 2155 8.712103 TCATCTATTCTTGGAACTCATCATCTT 58.288 33.333 0.00 0.00 0.00 2.40
1661 2164 5.721480 TGGAACTCATCATCTTCTCTTGGTA 59.279 40.000 0.00 0.00 0.00 3.25
1671 2174 4.425772 TCTTCTCTTGGTAGTGGGAATCA 58.574 43.478 0.00 0.00 0.00 2.57
1769 2272 6.757897 AGTGACAACAAGAGAATGAAAACA 57.242 33.333 0.00 0.00 0.00 2.83
1771 2274 6.599244 AGTGACAACAAGAGAATGAAAACAGA 59.401 34.615 0.00 0.00 0.00 3.41
1774 2277 6.268566 ACAACAAGAGAATGAAAACAGAAGC 58.731 36.000 0.00 0.00 0.00 3.86
1828 2331 1.582610 GCGGCAAAGGTTCGGATGAA 61.583 55.000 0.00 0.00 0.00 2.57
1931 2471 5.437289 TGTAGCACAACCTTTTTGATCTG 57.563 39.130 0.00 0.00 0.00 2.90
2083 3819 0.822164 CCGTGGAGATTCCCGTTACT 59.178 55.000 0.00 0.00 35.03 2.24
2144 3880 2.217510 TCTAGCTTTCGACCCACTCT 57.782 50.000 0.00 0.00 0.00 3.24
2145 3881 2.093106 TCTAGCTTTCGACCCACTCTC 58.907 52.381 0.00 0.00 0.00 3.20
2211 3951 2.519771 ATTTGCATGAGCTTCCTGGA 57.480 45.000 0.00 0.00 42.74 3.86
2273 4017 8.400186 TGCACTACATATGATTGATTGTTGAAG 58.600 33.333 10.38 0.00 0.00 3.02
2390 4134 3.000727 GACTGGCGCAAAGTATGTTACT 58.999 45.455 10.83 0.00 41.73 2.24
2393 4137 3.927854 TGGCGCAAAGTATGTTACTACA 58.072 40.909 10.83 0.00 38.26 2.74
2395 4139 4.569162 TGGCGCAAAGTATGTTACTACATC 59.431 41.667 10.83 0.00 43.81 3.06
2549 4300 5.163622 CCATTCACACGAAGGCAGAATTTAT 60.164 40.000 0.00 0.00 33.74 1.40
2563 4314 8.000709 AGGCAGAATTTATGATTACTGGATTGA 58.999 33.333 0.00 0.00 0.00 2.57
2804 4569 1.064017 TCTAATTGCGGGGAAGCCAAT 60.064 47.619 0.00 0.00 36.02 3.16
3031 4798 4.191544 CGGATCAAAGGATGTTGAGCTTA 58.808 43.478 3.53 0.00 42.29 3.09
3050 4817 7.045126 AGCTTATCTGGTGTATGTTACTCTC 57.955 40.000 0.00 0.00 0.00 3.20
3067 4834 5.426689 ACTCTCATAACCTGAATTCAGCA 57.573 39.130 27.01 15.53 42.47 4.41
3379 5168 3.129462 TCTGCAGATGGTAGAGAACTTCG 59.871 47.826 13.74 0.00 32.90 3.79
3393 5182 2.685850 ACTTCGTACACCTAATGGGC 57.314 50.000 0.00 0.00 39.10 5.36
3416 5205 4.865925 CGGTGGAACTTCAATAATGACGTA 59.134 41.667 0.00 0.00 37.08 3.57
3480 5274 6.183360 TGCACTGTAAACTCTTTATTGTTGCA 60.183 34.615 0.00 0.00 0.00 4.08
3581 5384 7.302524 GGAGTTGTTAATTTTTCTGCACGATA 58.697 34.615 0.00 0.00 0.00 2.92
3603 5406 8.219769 CGATATAATGTTGAAGATCTTGTCAGC 58.780 37.037 14.00 8.46 0.00 4.26
3610 5413 0.392193 AGATCTTGTCAGCCGCCTTG 60.392 55.000 0.00 0.00 0.00 3.61
3653 5457 4.979815 GGGAATTGTAAGTTCACCGTTTTG 59.020 41.667 0.00 0.00 0.00 2.44
3655 5460 4.640789 ATTGTAAGTTCACCGTTTTGCA 57.359 36.364 0.00 0.00 0.00 4.08
3666 5471 3.056891 CACCGTTTTGCATAATCTTGGGT 60.057 43.478 0.00 0.00 0.00 4.51
3779 5587 1.002773 GAGCCTCCGACAAAAAGGGTA 59.997 52.381 0.00 0.00 40.84 3.69
3792 5600 5.476945 ACAAAAAGGGTAGAGGCTATGTTTG 59.523 40.000 0.00 0.00 0.00 2.93
3810 5618 4.984161 TGTTTGAGCAGATAAAAGCAAAGC 59.016 37.500 0.00 0.00 0.00 3.51
3814 5622 6.573664 TGAGCAGATAAAAGCAAAGCTAAA 57.426 33.333 0.00 0.00 38.25 1.85
3816 5624 7.432869 TGAGCAGATAAAAGCAAAGCTAAAAA 58.567 30.769 0.00 0.00 38.25 1.94
3818 5626 6.870439 AGCAGATAAAAGCAAAGCTAAAAAGG 59.130 34.615 0.00 0.00 38.25 3.11
3860 5668 3.454447 TCCTGTGTGTTCTTCCTGAGAAA 59.546 43.478 0.00 0.00 45.59 2.52
3895 5709 1.419762 TGGTTTGCTCTGCTACCTCAA 59.580 47.619 12.73 0.00 35.87 3.02
3908 5722 6.264292 TCTGCTACCTCAACTTTGCAAATAAA 59.736 34.615 13.23 0.00 0.00 1.40
3981 5800 0.874390 GAAGCGTGAATGCCTTGTGA 59.126 50.000 0.00 0.00 34.65 3.58
4067 5886 5.840243 ATGTGCTGCTAAAGATAAATGCA 57.160 34.783 0.00 0.00 0.00 3.96
4076 5895 7.441017 TGCTAAAGATAAATGCAAAGGTTTGT 58.559 30.769 4.45 0.00 40.24 2.83
4077 5896 7.384660 TGCTAAAGATAAATGCAAAGGTTTGTG 59.615 33.333 4.45 0.00 40.24 3.33
4109 5928 9.797642 ATCTATATTTGCATCTTCAATGTACCA 57.202 29.630 0.00 0.00 0.00 3.25
4110 5929 9.056005 TCTATATTTGCATCTTCAATGTACCAC 57.944 33.333 0.00 0.00 0.00 4.16
4111 5930 4.418013 TTTGCATCTTCAATGTACCACG 57.582 40.909 0.00 0.00 0.00 4.94
4112 5931 1.737236 TGCATCTTCAATGTACCACGC 59.263 47.619 0.00 0.00 0.00 5.34
4113 5932 1.737236 GCATCTTCAATGTACCACGCA 59.263 47.619 0.00 0.00 0.00 5.24
4114 5933 2.161410 GCATCTTCAATGTACCACGCAA 59.839 45.455 0.00 0.00 0.00 4.85
4115 5934 3.181497 GCATCTTCAATGTACCACGCAAT 60.181 43.478 0.00 0.00 0.00 3.56
4116 5935 4.675146 GCATCTTCAATGTACCACGCAATT 60.675 41.667 0.00 0.00 0.00 2.32
4117 5936 5.401550 CATCTTCAATGTACCACGCAATTT 58.598 37.500 0.00 0.00 0.00 1.82
4118 5937 4.793071 TCTTCAATGTACCACGCAATTTG 58.207 39.130 0.00 0.00 0.00 2.32
4119 5938 4.277174 TCTTCAATGTACCACGCAATTTGT 59.723 37.500 0.00 0.00 0.00 2.83
4120 5939 4.576216 TCAATGTACCACGCAATTTGTT 57.424 36.364 0.00 0.00 0.00 2.83
4121 5940 4.294232 TCAATGTACCACGCAATTTGTTG 58.706 39.130 0.00 0.00 0.00 3.33
4122 5941 2.126914 TGTACCACGCAATTTGTTGC 57.873 45.000 3.18 3.18 44.09 4.17
4123 5942 1.269309 TGTACCACGCAATTTGTTGCC 60.269 47.619 7.48 0.00 44.66 4.52
4124 5943 1.000717 GTACCACGCAATTTGTTGCCT 60.001 47.619 7.48 0.00 44.66 4.75
4125 5944 0.463620 ACCACGCAATTTGTTGCCTT 59.536 45.000 7.48 0.00 44.66 4.35
4126 5945 0.860533 CCACGCAATTTGTTGCCTTG 59.139 50.000 7.48 5.31 44.66 3.61
4127 5946 1.569708 CACGCAATTTGTTGCCTTGT 58.430 45.000 7.48 0.00 44.66 3.16
4128 5947 1.258458 CACGCAATTTGTTGCCTTGTG 59.742 47.619 7.48 6.45 44.66 3.33
4129 5948 1.135915 ACGCAATTTGTTGCCTTGTGA 59.864 42.857 7.48 0.00 44.66 3.58
4130 5949 1.522258 CGCAATTTGTTGCCTTGTGAC 59.478 47.619 7.48 0.00 44.66 3.67
4131 5950 1.866601 GCAATTTGTTGCCTTGTGACC 59.133 47.619 1.84 0.00 41.85 4.02
4132 5951 2.741228 GCAATTTGTTGCCTTGTGACCA 60.741 45.455 1.84 0.00 41.85 4.02
4133 5952 3.731089 CAATTTGTTGCCTTGTGACCAT 58.269 40.909 0.00 0.00 0.00 3.55
4134 5953 2.886862 TTTGTTGCCTTGTGACCATG 57.113 45.000 0.00 0.00 0.00 3.66
4135 5954 2.064434 TTGTTGCCTTGTGACCATGA 57.936 45.000 0.00 0.00 0.00 3.07
4136 5955 1.608055 TGTTGCCTTGTGACCATGAG 58.392 50.000 0.00 0.00 0.00 2.90
4137 5956 0.883833 GTTGCCTTGTGACCATGAGG 59.116 55.000 0.00 0.00 42.21 3.86
4147 5966 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
4148 5967 1.447838 CCATGAGGTCACGGGTTCG 60.448 63.158 0.00 0.00 43.02 3.95
4149 5968 1.589630 CATGAGGTCACGGGTTCGA 59.410 57.895 0.00 0.00 40.11 3.71
4150 5969 0.458543 CATGAGGTCACGGGTTCGAG 60.459 60.000 0.00 0.00 40.11 4.04
4151 5970 0.898789 ATGAGGTCACGGGTTCGAGT 60.899 55.000 0.00 0.00 40.11 4.18
4152 5971 1.212229 GAGGTCACGGGTTCGAGTC 59.788 63.158 0.00 0.00 40.11 3.36
4153 5972 2.210341 GAGGTCACGGGTTCGAGTCC 62.210 65.000 0.82 0.82 40.11 3.85
4154 5973 2.273912 GGTCACGGGTTCGAGTCCT 61.274 63.158 8.28 0.00 40.11 3.85
4155 5974 1.080705 GTCACGGGTTCGAGTCCTG 60.081 63.158 13.65 13.65 40.11 3.86
4156 5975 2.261671 CACGGGTTCGAGTCCTGG 59.738 66.667 17.72 9.36 40.11 4.45
4157 5976 2.116772 ACGGGTTCGAGTCCTGGA 59.883 61.111 17.72 0.00 40.11 3.86
4158 5977 1.532316 ACGGGTTCGAGTCCTGGAA 60.532 57.895 17.72 0.00 40.11 3.53
4159 5978 1.117142 ACGGGTTCGAGTCCTGGAAA 61.117 55.000 17.72 0.00 40.11 3.13
4160 5979 0.669625 CGGGTTCGAGTCCTGGAAAC 60.670 60.000 0.00 0.00 39.00 2.78
4161 5980 0.395312 GGGTTCGAGTCCTGGAAACA 59.605 55.000 8.95 0.00 36.84 2.83
4172 5991 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
4173 5992 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
4174 5993 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
4175 5994 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
4176 5995 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
4177 5996 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
4178 5997 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
4179 5998 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
4180 5999 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
4181 6000 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
4182 6001 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
4183 6002 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
4184 6003 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
4185 6004 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
4186 6005 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
4187 6006 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
4188 6007 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
4189 6008 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
4190 6009 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
4191 6010 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
4192 6011 2.041620 AGAAATGTAGGGAAAGGCTGCA 59.958 45.455 0.50 0.00 0.00 4.41
4193 6012 2.834638 AATGTAGGGAAAGGCTGCAT 57.165 45.000 0.50 0.00 0.00 3.96
4194 6013 3.951563 AATGTAGGGAAAGGCTGCATA 57.048 42.857 0.50 0.00 0.00 3.14
4195 6014 2.710096 TGTAGGGAAAGGCTGCATAC 57.290 50.000 0.50 0.00 33.66 2.39
4196 6015 2.196595 TGTAGGGAAAGGCTGCATACT 58.803 47.619 0.50 0.00 34.13 2.12
4197 6016 3.380393 TGTAGGGAAAGGCTGCATACTA 58.620 45.455 0.50 0.00 34.13 1.82
4198 6017 3.973973 TGTAGGGAAAGGCTGCATACTAT 59.026 43.478 0.50 0.00 34.13 2.12
4199 6018 5.152193 TGTAGGGAAAGGCTGCATACTATA 58.848 41.667 0.50 0.00 34.13 1.31
4200 6019 4.899352 AGGGAAAGGCTGCATACTATAG 57.101 45.455 0.50 0.00 0.00 1.31
4201 6020 4.493618 AGGGAAAGGCTGCATACTATAGA 58.506 43.478 6.78 0.00 0.00 1.98
4202 6021 4.284746 AGGGAAAGGCTGCATACTATAGAC 59.715 45.833 6.78 0.00 0.00 2.59
4203 6022 4.563786 GGGAAAGGCTGCATACTATAGACC 60.564 50.000 6.78 0.00 0.00 3.85
4204 6023 4.563786 GGAAAGGCTGCATACTATAGACCC 60.564 50.000 6.78 0.00 0.00 4.46
4205 6024 3.260269 AGGCTGCATACTATAGACCCA 57.740 47.619 6.78 0.00 0.00 4.51
4206 6025 3.587498 AGGCTGCATACTATAGACCCAA 58.413 45.455 6.78 0.00 0.00 4.12
4207 6026 3.973973 AGGCTGCATACTATAGACCCAAA 59.026 43.478 6.78 0.00 0.00 3.28
4208 6027 4.040952 AGGCTGCATACTATAGACCCAAAG 59.959 45.833 6.78 0.00 0.00 2.77
4209 6028 4.202367 GGCTGCATACTATAGACCCAAAGT 60.202 45.833 6.78 0.00 0.00 2.66
4210 6029 4.752101 GCTGCATACTATAGACCCAAAGTG 59.248 45.833 6.78 0.00 0.00 3.16
4211 6030 5.290493 TGCATACTATAGACCCAAAGTGG 57.710 43.478 6.78 0.00 37.25 4.00
4212 6031 4.719773 TGCATACTATAGACCCAAAGTGGT 59.280 41.667 6.78 0.00 42.79 4.16
4217 6036 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4218 6037 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4219 6038 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4220 6039 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4221 6040 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4222 6041 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4223 6042 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4224 6043 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4225 6044 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
4232 6051 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
4259 6078 4.814294 GGAGCTACGTGCACCGGG 62.814 72.222 12.15 0.00 42.21 5.73
4316 6141 6.697019 TGTTAGCTGAAAAACTGAATGCTTTC 59.303 34.615 0.00 5.41 0.00 2.62
4327 6157 5.406649 ACTGAATGCTTTCGTTTTGTTTCA 58.593 33.333 7.73 0.00 34.39 2.69
4461 6302 4.171878 TGGTTCACCAGGACAAAATGTA 57.828 40.909 0.00 0.00 42.01 2.29
4467 6308 4.078537 CACCAGGACAAAATGTACCATCA 58.921 43.478 0.00 0.00 29.22 3.07
4536 6547 0.322648 TCAGGTGTCAGCTGATGGTG 59.677 55.000 26.87 14.75 46.53 4.17
4578 6589 3.157087 ACAATTTGCTTACTCACCTGGG 58.843 45.455 0.00 0.00 0.00 4.45
4579 6590 3.157087 CAATTTGCTTACTCACCTGGGT 58.843 45.455 0.00 0.00 0.00 4.51
4582 6593 1.136828 TGCTTACTCACCTGGGTGTT 58.863 50.000 17.87 9.91 45.55 3.32
4633 6645 1.452110 TGAAGTGGCCAATCATGTCG 58.548 50.000 7.24 0.00 0.00 4.35
4988 7065 7.595819 ATTTTTCTGTAGAAATTGGTGGACA 57.404 32.000 7.80 0.00 42.83 4.02
4999 7078 2.593346 TGGTGGACAATTTGTGTTGC 57.407 45.000 6.80 0.00 41.96 4.17
5047 7152 5.536538 TGACTCTAATACTCGATGCCATCTT 59.463 40.000 2.75 0.00 0.00 2.40
5048 7153 6.019779 ACTCTAATACTCGATGCCATCTTC 57.980 41.667 2.75 0.00 0.00 2.87
5084 7192 5.497474 GCACCCTGATTTCTAAGGAAACTA 58.503 41.667 0.00 0.00 43.16 2.24
5108 7216 3.281727 TGTCTTGATGTTAGGGATGGC 57.718 47.619 0.00 0.00 0.00 4.40
5169 7277 3.576118 GCTAGCTCAGATCATGGAGGTAA 59.424 47.826 7.70 6.45 41.83 2.85
5170 7278 4.039730 GCTAGCTCAGATCATGGAGGTAAA 59.960 45.833 7.70 4.17 41.83 2.01
5334 7450 7.301068 AGAATCATCACACGAGATTTTTCTC 57.699 36.000 0.00 0.00 32.51 2.87
5396 7531 8.881262 CCCAGGTAACCTACATCTTTTATCTAT 58.119 37.037 0.00 0.00 29.64 1.98
5423 7869 7.234577 ACACCTACAATTTTGTATGGACCAAAT 59.765 33.333 17.97 0.00 42.26 2.32
5503 7953 5.081728 TGTGTAGGTACTGTGGTTGATAGT 58.918 41.667 0.00 0.00 41.52 2.12
5518 7968 3.047857 TGATAGTGGAATCTGCCATCCA 58.952 45.455 0.00 0.00 43.32 3.41
5557 8007 0.035247 TGTGTGCTCATGCTGGCATA 60.035 50.000 7.79 5.98 40.66 3.14
5564 8014 3.316029 TGCTCATGCTGGCATAATTGTAC 59.684 43.478 7.79 0.00 40.48 2.90
5614 8068 3.988379 AACTCACATCGTTGCAAATGT 57.012 38.095 10.35 10.35 36.56 2.71
5681 8148 1.144913 AGGCCAACACACTACCATGTT 59.855 47.619 5.01 0.00 39.63 2.71
5746 8213 1.964223 CGTGCACTCCCTATCCTATGT 59.036 52.381 16.19 0.00 0.00 2.29
5944 8444 4.660789 ATATCAAAAAGGCATGGCTGAC 57.339 40.909 24.08 0.00 0.00 3.51
6021 8527 3.109847 GTGGCCAAGTTCACCAAGA 57.890 52.632 7.24 0.00 34.63 3.02
6029 8535 4.194640 CCAAGTTCACCAAGATCGATGAT 58.805 43.478 0.54 0.00 0.00 2.45
6105 8614 1.339535 TGCATCCCAATGTAGCGTCAA 60.340 47.619 0.00 0.00 35.18 3.18
6200 8714 0.521291 CGGAACCGGTCGTAGTGTTA 59.479 55.000 8.04 0.00 35.56 2.41
6210 8724 3.368116 GGTCGTAGTGTTAATGCCTGAGT 60.368 47.826 0.00 0.00 0.00 3.41
6240 8754 2.586425 TGCTTTTGGTCTTAGCTGCTT 58.414 42.857 7.79 0.00 35.93 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 1.213013 GGCGCAGAGACGAGAGAAA 59.787 57.895 10.83 0.00 34.06 2.52
21 23 2.045829 AGGCGCAGAGACGAGAGA 60.046 61.111 10.83 0.00 34.06 3.10
22 24 2.101965 CAGGCGCAGAGACGAGAG 59.898 66.667 10.83 0.00 34.06 3.20
24 26 3.639541 AAGCAGGCGCAGAGACGAG 62.640 63.158 10.83 0.00 42.27 4.18
27 29 1.023513 AATCAAGCAGGCGCAGAGAC 61.024 55.000 10.83 0.00 42.27 3.36
28 30 0.742281 GAATCAAGCAGGCGCAGAGA 60.742 55.000 10.83 0.00 42.27 3.10
30 32 1.022982 CAGAATCAAGCAGGCGCAGA 61.023 55.000 10.83 0.00 42.27 4.26
33 35 0.242017 AAACAGAATCAAGCAGGCGC 59.758 50.000 0.00 0.00 38.99 6.53
35 37 2.816087 TCAGAAACAGAATCAAGCAGGC 59.184 45.455 0.00 0.00 0.00 4.85
41 47 6.146184 CGAAACTAGCTCAGAAACAGAATCAA 59.854 38.462 0.00 0.00 0.00 2.57
45 51 4.038763 TCCGAAACTAGCTCAGAAACAGAA 59.961 41.667 0.00 0.00 0.00 3.02
56 62 5.291128 CGTGAAACAATATCCGAAACTAGCT 59.709 40.000 0.00 0.00 35.74 3.32
71 77 7.517101 CGAGAAAGTAAATACACCGTGAAACAA 60.517 37.037 5.28 0.00 35.74 2.83
76 82 3.922240 GCGAGAAAGTAAATACACCGTGA 59.078 43.478 5.28 0.00 0.00 4.35
77 83 3.061697 GGCGAGAAAGTAAATACACCGTG 59.938 47.826 0.00 0.00 0.00 4.94
78 84 3.256558 GGCGAGAAAGTAAATACACCGT 58.743 45.455 0.00 0.00 0.00 4.83
79 85 2.280708 CGGCGAGAAAGTAAATACACCG 59.719 50.000 0.00 0.00 0.00 4.94
80 86 3.256558 ACGGCGAGAAAGTAAATACACC 58.743 45.455 16.62 0.00 0.00 4.16
81 87 4.916099 AACGGCGAGAAAGTAAATACAC 57.084 40.909 16.62 0.00 0.00 2.90
83 89 6.161911 AGAAAACGGCGAGAAAGTAAATAC 57.838 37.500 16.62 0.00 0.00 1.89
85 91 5.449304 CAAGAAAACGGCGAGAAAGTAAAT 58.551 37.500 16.62 0.00 0.00 1.40
86 92 4.787245 GCAAGAAAACGGCGAGAAAGTAAA 60.787 41.667 16.62 0.00 0.00 2.01
87 93 3.303526 GCAAGAAAACGGCGAGAAAGTAA 60.304 43.478 16.62 0.00 0.00 2.24
88 94 2.222445 GCAAGAAAACGGCGAGAAAGTA 59.778 45.455 16.62 0.00 0.00 2.24
89 95 1.002792 GCAAGAAAACGGCGAGAAAGT 60.003 47.619 16.62 0.00 0.00 2.66
90 96 1.663161 GGCAAGAAAACGGCGAGAAAG 60.663 52.381 16.62 0.00 0.00 2.62
91 97 0.309612 GGCAAGAAAACGGCGAGAAA 59.690 50.000 16.62 0.00 0.00 2.52
92 98 1.946267 GGCAAGAAAACGGCGAGAA 59.054 52.632 16.62 0.00 0.00 2.87
93 99 3.650369 GGCAAGAAAACGGCGAGA 58.350 55.556 16.62 0.00 0.00 4.04
113 119 3.320541 GCCATGGATCTATCTATCCTCGG 59.679 52.174 18.40 5.82 44.98 4.63
143 149 1.580815 GACCTAGCTAGCGACTACGT 58.419 55.000 15.74 5.77 41.98 3.57
195 201 0.662970 GACAGATGGATCGAGCGAGC 60.663 60.000 0.00 0.00 0.00 5.03
196 202 0.385348 CGACAGATGGATCGAGCGAG 60.385 60.000 0.00 0.00 40.86 5.03
197 203 1.649267 CGACAGATGGATCGAGCGA 59.351 57.895 0.00 0.00 40.86 4.93
198 204 2.013483 GCGACAGATGGATCGAGCG 61.013 63.158 0.00 0.00 40.86 5.03
217 223 2.455674 AGACGAACTAGTGCAATGCA 57.544 45.000 2.72 2.72 35.60 3.96
218 224 2.996621 AGAAGACGAACTAGTGCAATGC 59.003 45.455 0.74 0.00 0.00 3.56
219 225 3.301906 CGAGAAGACGAACTAGTGCAATG 59.698 47.826 0.74 0.00 35.09 2.82
221 227 2.551032 TCGAGAAGACGAACTAGTGCAA 59.449 45.455 0.74 0.00 39.34 4.08
248 254 0.249911 AATCCTAGATTCGCACGGCC 60.250 55.000 0.00 0.00 0.00 6.13
268 274 6.265196 TCATCACTCACAAAGTTAAAAGCCAT 59.735 34.615 0.00 0.00 35.45 4.40
291 300 3.987868 GCGAAACATTAGTGACTCACTCA 59.012 43.478 15.20 5.22 41.21 3.41
308 320 3.713826 AAACCCTCTGAATAGGCGAAA 57.286 42.857 0.00 0.00 35.09 3.46
313 325 4.576330 ACCTGAAAACCCTCTGAATAGG 57.424 45.455 0.00 0.00 36.30 2.57
315 327 4.105697 ACCAACCTGAAAACCCTCTGAATA 59.894 41.667 0.00 0.00 0.00 1.75
316 328 3.117131 ACCAACCTGAAAACCCTCTGAAT 60.117 43.478 0.00 0.00 0.00 2.57
318 330 1.850345 ACCAACCTGAAAACCCTCTGA 59.150 47.619 0.00 0.00 0.00 3.27
319 331 1.956477 CACCAACCTGAAAACCCTCTG 59.044 52.381 0.00 0.00 0.00 3.35
320 332 1.754201 GCACCAACCTGAAAACCCTCT 60.754 52.381 0.00 0.00 0.00 3.69
396 454 2.487762 TGATCTGTCGCATCCCAAAAAC 59.512 45.455 0.00 0.00 0.00 2.43
397 455 2.749076 CTGATCTGTCGCATCCCAAAAA 59.251 45.455 0.00 0.00 0.00 1.94
398 456 2.358957 CTGATCTGTCGCATCCCAAAA 58.641 47.619 0.00 0.00 0.00 2.44
451 509 6.653320 AGGAAATCACTTCGTAGTAATTTGCA 59.347 34.615 19.52 0.00 40.77 4.08
468 526 3.245264 GGGGAGGAAACAAGAGGAAATCA 60.245 47.826 0.00 0.00 0.00 2.57
471 529 2.108250 CAGGGGAGGAAACAAGAGGAAA 59.892 50.000 0.00 0.00 0.00 3.13
479 537 1.132332 TCTAACCCAGGGGAGGAAACA 60.132 52.381 11.37 0.00 38.96 2.83
493 551 2.380081 CATTCGGTGCCGTCTAACC 58.620 57.895 10.60 0.00 40.74 2.85
516 575 6.824305 AAGAAGATATGGAACCACAAGTTG 57.176 37.500 0.00 0.00 39.40 3.16
545 604 6.590292 TGAAACCACAAGTTATTTCGCAAAAA 59.410 30.769 0.00 0.00 37.88 1.94
548 607 5.038033 GTGAAACCACAAGTTATTTCGCAA 58.962 37.500 11.64 0.00 39.95 4.85
549 608 4.096532 TGTGAAACCACAAGTTATTTCGCA 59.903 37.500 13.82 13.82 44.80 5.10
550 609 4.602995 TGTGAAACCACAAGTTATTTCGC 58.397 39.130 10.39 10.39 41.18 4.70
552 611 8.816640 ATTGATGTGAAACCACAAGTTATTTC 57.183 30.769 2.21 0.00 46.34 2.17
553 612 9.912634 CTATTGATGTGAAACCACAAGTTATTT 57.087 29.630 2.21 0.00 46.34 1.40
554 613 9.295825 TCTATTGATGTGAAACCACAAGTTATT 57.704 29.630 2.21 0.00 46.34 1.40
555 614 8.862325 TCTATTGATGTGAAACCACAAGTTAT 57.138 30.769 2.21 0.00 46.34 1.89
556 615 8.564574 GTTCTATTGATGTGAAACCACAAGTTA 58.435 33.333 2.21 0.00 46.34 2.24
571 630 4.402474 GGTTTTCCCCCAGTTCTATTGATG 59.598 45.833 0.00 0.00 0.00 3.07
578 637 2.394632 GTTTGGTTTTCCCCCAGTTCT 58.605 47.619 0.00 0.00 39.73 3.01
589 648 6.441088 TTTATGCAATAGGGGTTTGGTTTT 57.559 33.333 0.00 0.00 0.00 2.43
789 849 9.878106 TACATGGTATGTTTCCCAAGAAAGGGG 62.878 44.444 0.00 0.00 44.69 4.79
791 851 4.772100 ACATGGTATGTTTCCCAAGAAAGG 59.228 41.667 0.00 0.00 42.60 3.11
792 852 5.982890 ACATGGTATGTTTCCCAAGAAAG 57.017 39.130 0.00 0.00 42.60 2.62
795 855 5.772393 ACTACATGGTATGTTTCCCAAGA 57.228 39.130 0.00 0.00 41.63 3.02
796 856 7.279615 TGATACTACATGGTATGTTTCCCAAG 58.720 38.462 0.00 0.00 41.63 3.61
913 1308 3.763897 AGGGAATTAACCAGACATTGTGC 59.236 43.478 0.00 0.00 0.00 4.57
978 1373 4.997565 TCTTTTCTGCAAGGAAAACACAG 58.002 39.130 9.19 1.96 41.86 3.66
1077 1472 0.332293 TGCTGGAATCATCCTTGCCA 59.668 50.000 9.60 0.00 46.70 4.92
1078 1473 1.407979 CTTGCTGGAATCATCCTTGCC 59.592 52.381 9.60 0.00 46.70 4.52
1085 1537 0.035152 TGGCGACTTGCTGGAATCAT 60.035 50.000 0.00 0.00 45.43 2.45
1291 1743 5.221541 GGTGATGGATGGACTAGTTTAGGAG 60.222 48.000 0.00 0.00 0.00 3.69
1561 2041 3.620488 TGAAGCATCAACCAGGATAACC 58.380 45.455 0.00 0.00 30.99 2.85
1565 2045 2.941480 GGATGAAGCATCAACCAGGAT 58.059 47.619 12.80 0.00 45.36 3.24
1586 2069 3.997021 AGCAGATGAGTGTTTTACCTTCG 59.003 43.478 0.00 0.00 0.00 3.79
1652 2155 4.624913 AGATGATTCCCACTACCAAGAGA 58.375 43.478 0.00 0.00 0.00 3.10
1661 2164 9.872684 ATATTAAATGTCAAGATGATTCCCACT 57.127 29.630 0.00 0.00 0.00 4.00
1769 2272 5.596836 TGAAAATTTTGGAGTGTGCTTCT 57.403 34.783 8.47 0.00 0.00 2.85
1771 2274 5.118286 CCTTGAAAATTTTGGAGTGTGCTT 58.882 37.500 8.47 0.00 0.00 3.91
1774 2277 4.810491 CCACCTTGAAAATTTTGGAGTGTG 59.190 41.667 8.47 13.50 0.00 3.82
1838 2377 0.250513 GAACCCGAAGAGCATCCTGT 59.749 55.000 0.00 0.00 33.66 4.00
1931 2471 9.624697 TCATAGAGTTTGCAACATTTGATAAAC 57.375 29.630 0.00 9.42 38.45 2.01
1988 3716 7.770433 TGAGTGAGTATAAGAACATGGAATTGG 59.230 37.037 0.00 0.00 0.00 3.16
2068 3804 2.500504 ACTCCAAGTAACGGGAATCTCC 59.499 50.000 0.00 0.00 35.23 3.71
2083 3819 3.494254 ACCGCCACCCAACTCCAA 61.494 61.111 0.00 0.00 0.00 3.53
2144 3880 1.277273 CATTGAGTGAGAGCCCACTGA 59.723 52.381 8.49 0.00 46.45 3.41
2145 3881 1.002888 ACATTGAGTGAGAGCCCACTG 59.997 52.381 8.49 0.00 46.45 3.66
2184 3924 2.743553 AGCTCATGCAAATTAGGCCTT 58.256 42.857 12.58 0.00 42.74 4.35
2254 3995 9.749490 GCAAAAACTTCAACAATCAATCATATG 57.251 29.630 0.00 0.00 0.00 1.78
2273 4017 4.208253 CGTGGTGGTTAAATCTGCAAAAAC 59.792 41.667 0.00 0.00 0.00 2.43
2393 4137 9.823647 ACTGAACATCTATTAAGAAATCACGAT 57.176 29.630 0.00 0.00 34.73 3.73
2395 4139 8.543774 GGACTGAACATCTATTAAGAAATCACG 58.456 37.037 0.00 0.00 34.73 4.35
2424 4168 8.543774 ACATGTTAGTCTAGTGATGGATTCTTT 58.456 33.333 0.00 0.00 0.00 2.52
2549 4300 5.309638 TGTTTTCGGTCAATCCAGTAATCA 58.690 37.500 0.00 0.00 35.57 2.57
2563 4314 3.059166 GCTCATTGCAATTGTTTTCGGT 58.941 40.909 9.83 0.00 42.31 4.69
2804 4569 2.270850 GGAGGTATGTTGGGCGCA 59.729 61.111 10.83 0.00 0.00 6.09
2927 4694 9.914834 TTTATACCTTTGTAATGGCAGTAGAAT 57.085 29.630 5.36 0.00 0.00 2.40
3031 4798 7.565398 AGGTTATGAGAGTAACATACACCAGAT 59.435 37.037 3.27 0.00 36.51 2.90
3067 4834 7.712639 CCTGTGAACATTATCTACTGCAGTATT 59.287 37.037 26.22 18.45 0.00 1.89
3083 4850 8.877864 TCAATATTTTTAGACCCTGTGAACAT 57.122 30.769 0.00 0.00 0.00 2.71
3393 5182 3.682858 ACGTCATTATTGAAGTTCCACCG 59.317 43.478 0.00 0.00 41.01 4.94
3416 5205 4.973168 TCAAGAGGTATGTTCAGTTGCTT 58.027 39.130 0.00 0.00 0.00 3.91
3480 5274 6.854496 ACGTTACCGCATCAATAACAATAT 57.146 33.333 0.00 0.00 37.70 1.28
3490 5284 0.390603 CTGGGAACGTTACCGCATCA 60.391 55.000 24.41 5.69 37.70 3.07
3502 5296 0.687354 TGGAGAGCAGAACTGGGAAC 59.313 55.000 3.99 0.00 0.00 3.62
3581 5384 5.295292 CGGCTGACAAGATCTTCAACATTAT 59.705 40.000 4.57 0.00 0.00 1.28
3603 5406 1.002134 ACCAGATTGGACAAGGCGG 60.002 57.895 1.40 0.00 40.96 6.13
3610 5413 1.815003 CTTCTTGGCACCAGATTGGAC 59.185 52.381 1.40 0.00 40.96 4.02
3698 5506 4.840716 TTTGGCCATTTCCTGCAAATAT 57.159 36.364 6.09 0.00 32.48 1.28
3779 5587 5.620738 TTATCTGCTCAAACATAGCCTCT 57.379 39.130 0.00 0.00 39.30 3.69
3792 5600 7.062722 CCTTTTTAGCTTTGCTTTTATCTGCTC 59.937 37.037 0.00 0.00 40.44 4.26
3810 5618 7.809546 AGAGAAAGTCTGGTTTCCTTTTTAG 57.190 36.000 0.00 0.00 37.16 1.85
3814 5622 6.427441 AGAAAGAGAAAGTCTGGTTTCCTTT 58.573 36.000 10.17 10.17 38.38 3.11
3816 5624 5.455469 GGAGAAAGAGAAAGTCTGGTTTCCT 60.455 44.000 6.26 0.00 37.16 3.36
3818 5626 5.468409 CAGGAGAAAGAGAAAGTCTGGTTTC 59.532 44.000 0.00 0.00 34.84 2.78
3860 5668 5.564550 AGCAAACCATAGATGTCAGAGTTT 58.435 37.500 0.00 0.00 0.00 2.66
3935 5749 8.141909 CACGGTCCTGATAAGAACAATAGATTA 58.858 37.037 0.00 0.00 0.00 1.75
3938 5752 5.163447 CCACGGTCCTGATAAGAACAATAGA 60.163 44.000 0.00 0.00 0.00 1.98
3981 5800 4.447389 GCATTGCGTAAAGAAACCATGTTT 59.553 37.500 0.00 0.00 0.00 2.83
4067 5886 9.912634 CAAATATAGATCACAACACAAACCTTT 57.087 29.630 0.00 0.00 0.00 3.11
4076 5895 8.735692 TGAAGATGCAAATATAGATCACAACA 57.264 30.769 0.00 0.00 0.00 3.33
4112 5931 3.176552 TGGTCACAAGGCAACAAATTG 57.823 42.857 0.00 0.00 38.99 2.32
4113 5932 3.387374 TCATGGTCACAAGGCAACAAATT 59.613 39.130 0.00 0.00 41.41 1.82
4114 5933 2.964464 TCATGGTCACAAGGCAACAAAT 59.036 40.909 0.00 0.00 41.41 2.32
4115 5934 2.361757 CTCATGGTCACAAGGCAACAAA 59.638 45.455 0.00 0.00 41.41 2.83
4116 5935 1.955778 CTCATGGTCACAAGGCAACAA 59.044 47.619 0.00 0.00 41.41 2.83
4117 5936 1.608055 CTCATGGTCACAAGGCAACA 58.392 50.000 0.00 0.00 41.41 3.33
4118 5937 0.883833 CCTCATGGTCACAAGGCAAC 59.116 55.000 0.00 0.00 0.00 4.17
4119 5938 0.478072 ACCTCATGGTCACAAGGCAA 59.522 50.000 0.00 0.00 44.78 4.52
4120 5939 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
4131 5950 0.458543 CTCGAACCCGTGACCTCATG 60.459 60.000 0.00 0.00 37.05 3.07
4132 5951 0.898789 ACTCGAACCCGTGACCTCAT 60.899 55.000 0.00 0.00 37.05 2.90
4133 5952 1.521450 GACTCGAACCCGTGACCTCA 61.521 60.000 0.00 0.00 37.05 3.86
4134 5953 1.212229 GACTCGAACCCGTGACCTC 59.788 63.158 0.00 0.00 37.05 3.85
4135 5954 2.273912 GGACTCGAACCCGTGACCT 61.274 63.158 0.00 0.00 39.62 3.85
4136 5955 2.260743 GGACTCGAACCCGTGACC 59.739 66.667 0.00 0.00 37.08 4.02
4137 5956 1.080705 CAGGACTCGAACCCGTGAC 60.081 63.158 4.92 0.00 37.05 3.67
4138 5957 2.273179 CCAGGACTCGAACCCGTGA 61.273 63.158 4.92 0.00 37.05 4.35
4139 5958 1.812686 TTCCAGGACTCGAACCCGTG 61.813 60.000 0.00 0.64 37.05 4.94
4140 5959 1.117142 TTTCCAGGACTCGAACCCGT 61.117 55.000 0.00 0.00 37.05 5.28
4141 5960 0.669625 GTTTCCAGGACTCGAACCCG 60.670 60.000 0.00 0.00 37.07 5.28
4142 5961 0.395312 TGTTTCCAGGACTCGAACCC 59.605 55.000 0.00 0.12 0.00 4.11
4143 5962 1.797025 CTGTTTCCAGGACTCGAACC 58.203 55.000 0.00 0.64 34.90 3.62
4144 5963 1.149148 GCTGTTTCCAGGACTCGAAC 58.851 55.000 0.00 0.00 39.22 3.95
4145 5964 0.034896 GGCTGTTTCCAGGACTCGAA 59.965 55.000 0.00 0.00 39.22 3.71
4146 5965 0.832135 AGGCTGTTTCCAGGACTCGA 60.832 55.000 0.00 0.00 39.22 4.04
4147 5966 0.390472 GAGGCTGTTTCCAGGACTCG 60.390 60.000 0.00 0.00 39.22 4.18
4148 5967 0.980423 AGAGGCTGTTTCCAGGACTC 59.020 55.000 0.00 0.00 39.22 3.36
4149 5968 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
4150 5969 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
4151 5970 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
4152 5971 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
4153 5972 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
4154 5973 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
4155 5974 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
4165 5984 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
4166 5985 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
4167 5986 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
4168 5987 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
4169 5988 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
4170 5989 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
4171 5990 2.041620 TGCAGCCTTTCCCTACATTTCT 59.958 45.455 0.00 0.00 0.00 2.52
4172 5991 2.446435 TGCAGCCTTTCCCTACATTTC 58.554 47.619 0.00 0.00 0.00 2.17
4173 5992 2.603075 TGCAGCCTTTCCCTACATTT 57.397 45.000 0.00 0.00 0.00 2.32
4174 5993 2.834638 ATGCAGCCTTTCCCTACATT 57.165 45.000 0.00 0.00 0.00 2.71
4175 5994 2.780010 AGTATGCAGCCTTTCCCTACAT 59.220 45.455 0.00 0.00 0.00 2.29
4176 5995 2.196595 AGTATGCAGCCTTTCCCTACA 58.803 47.619 0.00 0.00 0.00 2.74
4177 5996 4.625607 ATAGTATGCAGCCTTTCCCTAC 57.374 45.455 0.00 0.00 0.00 3.18
4178 5997 5.480772 GTCTATAGTATGCAGCCTTTCCCTA 59.519 44.000 0.00 0.00 0.00 3.53
4179 5998 4.284746 GTCTATAGTATGCAGCCTTTCCCT 59.715 45.833 0.00 0.00 0.00 4.20
4180 5999 4.563786 GGTCTATAGTATGCAGCCTTTCCC 60.564 50.000 0.00 0.00 0.00 3.97
4181 6000 4.563786 GGGTCTATAGTATGCAGCCTTTCC 60.564 50.000 0.00 0.00 0.00 3.13
4182 6001 4.040461 TGGGTCTATAGTATGCAGCCTTTC 59.960 45.833 0.00 0.00 0.00 2.62
4183 6002 3.973973 TGGGTCTATAGTATGCAGCCTTT 59.026 43.478 0.00 0.00 0.00 3.11
4184 6003 3.587498 TGGGTCTATAGTATGCAGCCTT 58.413 45.455 0.00 0.00 0.00 4.35
4185 6004 3.260269 TGGGTCTATAGTATGCAGCCT 57.740 47.619 0.00 0.00 0.00 4.58
4186 6005 4.202367 ACTTTGGGTCTATAGTATGCAGCC 60.202 45.833 0.00 0.00 0.00 4.85
4187 6006 4.752101 CACTTTGGGTCTATAGTATGCAGC 59.248 45.833 0.00 0.00 0.00 5.25
4188 6007 5.163301 ACCACTTTGGGTCTATAGTATGCAG 60.163 44.000 0.00 0.00 43.37 4.41
4189 6008 4.719773 ACCACTTTGGGTCTATAGTATGCA 59.280 41.667 0.00 0.00 43.37 3.96
4190 6009 5.291905 ACCACTTTGGGTCTATAGTATGC 57.708 43.478 0.00 0.00 43.37 3.14
4201 6020 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4202 6021 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4203 6022 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4204 6023 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4205 6024 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4206 6025 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4207 6026 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4208 6027 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
4215 6034 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
4231 6050 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4234 6053 4.796231 ACGTAGCTCCCGCTTGCG 62.796 66.667 8.14 8.14 46.47 4.85
4235 6054 3.188786 CACGTAGCTCCCGCTTGC 61.189 66.667 5.69 0.00 46.47 4.01
4236 6055 3.188786 GCACGTAGCTCCCGCTTG 61.189 66.667 5.69 0.00 46.47 4.01
4237 6056 3.691342 TGCACGTAGCTCCCGCTT 61.691 61.111 10.54 0.00 46.47 4.68
4257 6076 1.341581 TGGTACATTAAAGGGCAGCCC 60.342 52.381 24.90 24.90 45.90 5.19
4258 6077 1.749063 GTGGTACATTAAAGGGCAGCC 59.251 52.381 1.26 1.26 44.52 4.85
4259 6078 2.163613 GTGTGGTACATTAAAGGGCAGC 59.836 50.000 0.00 0.00 44.52 5.25
4260 6079 3.417101 TGTGTGGTACATTAAAGGGCAG 58.583 45.455 0.00 0.00 44.52 4.85
4261 6080 3.510531 TGTGTGGTACATTAAAGGGCA 57.489 42.857 0.00 0.00 44.52 5.36
4262 6081 5.400066 AATTGTGTGGTACATTAAAGGGC 57.600 39.130 0.00 0.00 44.52 5.19
4263 6082 6.015010 TCCAAATTGTGTGGTACATTAAAGGG 60.015 38.462 0.00 0.00 44.52 3.95
4264 6083 6.987386 TCCAAATTGTGTGGTACATTAAAGG 58.013 36.000 0.00 0.00 44.52 3.11
4268 6087 7.957002 ACAAATCCAAATTGTGTGGTACATTA 58.043 30.769 0.00 0.00 39.43 1.90
4316 6141 5.233902 TGATTGGCAGAAATGAAACAAAACG 59.766 36.000 0.00 0.00 0.00 3.60
4454 6292 3.573538 TGCAGCAACTGATGGTACATTTT 59.426 39.130 0.00 0.00 37.77 1.82
4458 6299 1.072173 ACTGCAGCAACTGATGGTACA 59.928 47.619 15.27 0.00 37.77 2.90
4461 6302 2.224621 ACTTACTGCAGCAACTGATGGT 60.225 45.455 15.27 0.00 41.41 3.55
4467 6308 2.689983 AGCAAAACTTACTGCAGCAACT 59.310 40.909 15.27 0.00 41.17 3.16
4536 6547 1.740025 CGGTTGGAAAATCTCTCCAGC 59.260 52.381 0.00 0.00 43.79 4.85
4999 7078 4.730949 TTGTACTCTTAACATCGAGGGG 57.269 45.455 0.69 0.00 0.00 4.79
5047 7152 2.955660 CAGGGTGCCAAAGTAAACTTGA 59.044 45.455 0.00 0.00 36.12 3.02
5048 7153 2.955660 TCAGGGTGCCAAAGTAAACTTG 59.044 45.455 0.00 0.00 36.12 3.16
5084 7192 5.195940 CCATCCCTAACATCAAGACAACAT 58.804 41.667 0.00 0.00 0.00 2.71
5108 7216 2.724977 TGAACTGGCTCTCACTAACG 57.275 50.000 0.00 0.00 0.00 3.18
5185 7293 3.265221 AGAACTGGCTCATGAAGAATGGA 59.735 43.478 0.00 0.00 36.86 3.41
5334 7450 0.108615 AGGTCTCTGTCCATTTCGCG 60.109 55.000 0.00 0.00 0.00 5.87
5396 7531 6.780901 TGGTCCATACAAAATTGTAGGTGTA 58.219 36.000 14.58 0.00 45.80 2.90
5398 7533 6.582677 TTGGTCCATACAAAATTGTAGGTG 57.417 37.500 14.58 8.08 45.80 4.00
5423 7869 5.772672 TGTAAAAAGGCCTAAGAATTGCTCA 59.227 36.000 5.16 0.00 0.00 4.26
5503 7953 1.297968 TCCTTGGATGGCAGATTCCA 58.702 50.000 4.20 4.20 40.24 3.53
5518 7968 7.066284 GCACACATGTAGAAATCATAGTTCCTT 59.934 37.037 0.00 0.00 0.00 3.36
5557 8007 6.015688 TCACAAGGTAGAGAGAACGTACAATT 60.016 38.462 0.00 0.00 0.00 2.32
5564 8014 4.230657 CAACTCACAAGGTAGAGAGAACG 58.769 47.826 0.00 0.00 35.83 3.95
5601 8055 7.370383 AGACTCAAATAAACATTTGCAACGAT 58.630 30.769 0.00 0.00 40.36 3.73
5602 8056 6.734137 AGACTCAAATAAACATTTGCAACGA 58.266 32.000 0.00 0.00 40.36 3.85
5614 8068 9.507329 AAGCAGAATGACTTAGACTCAAATAAA 57.493 29.630 0.00 0.00 39.69 1.40
5623 8077 6.305693 ACACAAAAGCAGAATGACTTAGAC 57.694 37.500 0.00 0.00 39.69 2.59
5681 8148 7.448613 AGAGAAGCCTATCTCATCGTGGAGA 62.449 48.000 12.64 10.36 46.73 3.71
5771 8238 9.796120 CAAGGTAACAACTGAATCTTTTGTTAA 57.204 29.630 16.16 4.64 43.68 2.01
5944 8444 4.500499 ACTGAGAGGGAAAATCAGATGG 57.500 45.455 8.32 0.00 42.48 3.51
6019 8525 4.327680 TGTCTCCGACATATCATCGATCT 58.672 43.478 0.00 0.00 42.25 2.75
6041 8550 3.474570 GCCTCAGCCTGGGACGAT 61.475 66.667 0.00 0.00 0.00 3.73
6105 8614 2.669670 CGACTCAGCAGAAGAACATCGT 60.670 50.000 0.00 0.00 0.00 3.73
6200 8714 3.276857 CATACTTCAGCACTCAGGCATT 58.723 45.455 0.00 0.00 35.83 3.56
6210 8724 3.754965 AGACCAAAAGCATACTTCAGCA 58.245 40.909 0.00 0.00 34.05 4.41
6240 8754 5.657474 GTCGAGATAACACCCACTAAATCA 58.343 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.