Multiple sequence alignment - TraesCS7B01G372300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G372300 chr7B 100.000 5848 0 0 1 5848 638065170 638071017 0.000000e+00 10800.0
1 TraesCS7B01G372300 chr7B 86.592 537 59 7 2369 2893 638066923 638067458 1.090000e-161 580.0
2 TraesCS7B01G372300 chr7B 86.592 537 59 7 1754 2289 638067538 638068062 1.090000e-161 580.0
3 TraesCS7B01G372300 chr7B 92.537 67 4 1 2781 2846 638067484 638067550 1.730000e-15 95.3
4 TraesCS7B01G372300 chr7B 92.537 67 4 1 2315 2381 638067950 638068015 1.730000e-15 95.3
5 TraesCS7B01G372300 chr7B 100.000 28 0 0 2319 2346 638067458 638067485 1.100000e-02 52.8
6 TraesCS7B01G372300 chr7B 100.000 28 0 0 2785 2812 638067458 638067485 1.100000e-02 52.8
7 TraesCS7B01G372300 chr7B 100.000 28 0 0 2289 2316 638067488 638067515 1.100000e-02 52.8
8 TraesCS7B01G372300 chr7B 100.000 28 0 0 2289 2316 638067954 638067981 1.100000e-02 52.8
9 TraesCS7B01G372300 chr7D 89.609 3551 212 79 2369 5848 575862297 575865761 0.000000e+00 4368.0
10 TraesCS7B01G372300 chr7D 86.381 1028 69 34 716 1707 575861202 575862194 0.000000e+00 1057.0
11 TraesCS7B01G372300 chr7D 84.237 590 51 11 1708 2289 575862251 575862806 2.400000e-148 536.0
12 TraesCS7B01G372300 chr7D 82.923 609 66 19 1001 1596 577332509 577331926 1.120000e-141 514.0
13 TraesCS7B01G372300 chr7D 81.965 621 68 17 1001 1596 435180103 435180704 2.450000e-133 486.0
14 TraesCS7B01G372300 chr7D 86.473 414 37 7 326 732 575860783 575861184 2.500000e-118 436.0
15 TraesCS7B01G372300 chr7D 84.892 417 44 11 417 829 575859481 575859882 2.540000e-108 403.0
16 TraesCS7B01G372300 chr7D 83.830 235 30 3 1369 1596 65766525 65766292 3.550000e-52 217.0
17 TraesCS7B01G372300 chr7D 86.364 198 21 3 326 522 575860552 575860744 1.650000e-50 211.0
18 TraesCS7B01G372300 chr7A 93.883 1929 86 18 2965 4870 666604794 666606713 0.000000e+00 2880.0
19 TraesCS7B01G372300 chr7A 92.356 1282 67 8 1713 2985 666603355 666604614 0.000000e+00 1796.0
20 TraesCS7B01G372300 chr7A 87.777 1399 118 33 326 1707 666601937 666603299 0.000000e+00 1587.0
21 TraesCS7B01G372300 chr7A 87.013 539 55 8 2369 2893 666603396 666603933 1.400000e-165 593.0
22 TraesCS7B01G372300 chr7A 85.876 531 50 15 1760 2289 666604016 666604522 5.150000e-150 542.0
23 TraesCS7B01G372300 chr7A 82.315 622 58 21 1001 1596 69159984 69159389 5.270000e-135 492.0
24 TraesCS7B01G372300 chr7A 87.041 463 25 15 4859 5314 666606736 666607170 1.890000e-134 490.0
25 TraesCS7B01G372300 chr7A 93.210 324 20 2 5526 5848 666607462 666607784 5.300000e-130 475.0
26 TraesCS7B01G372300 chr7A 88.925 307 27 6 318 621 666598337 666598639 7.160000e-99 372.0
27 TraesCS7B01G372300 chr7A 78.179 637 91 28 1 621 666598939 666599543 4.310000e-96 363.0
28 TraesCS7B01G372300 chr7A 78.159 641 84 29 1 621 666599844 666600448 2.000000e-94 357.0
29 TraesCS7B01G372300 chr7A 90.667 225 17 3 5310 5531 666607204 666607427 4.430000e-76 296.0
30 TraesCS7B01G372300 chr7A 95.522 67 3 0 2176 2242 666603958 666604024 2.230000e-19 108.0
31 TraesCS7B01G372300 chr7A 95.455 66 3 0 2781 2846 666603959 666604024 8.010000e-19 106.0
32 TraesCS7B01G372300 chr7A 92.537 67 4 1 2315 2381 666604410 666604475 1.730000e-15 95.3
33 TraesCS7B01G372300 chr7A 92.424 66 4 1 2316 2381 666603822 666603886 6.240000e-15 93.5
34 TraesCS7B01G372300 chr7A 100.000 28 0 0 2785 2812 666603933 666603960 1.100000e-02 52.8
35 TraesCS7B01G372300 chr7A 100.000 28 0 0 2289 2316 666604414 666604441 1.100000e-02 52.8
36 TraesCS7B01G372300 chr4D 82.483 725 77 22 1001 1704 347174975 347174280 1.820000e-164 590.0
37 TraesCS7B01G372300 chr6A 83.119 622 65 20 1001 1596 385571966 385571359 1.120000e-146 531.0
38 TraesCS7B01G372300 chr1B 84.083 578 58 15 1001 1557 671831697 671832261 1.440000e-145 527.0
39 TraesCS7B01G372300 chr3D 82.955 616 72 14 1001 1596 584381754 584381152 5.190000e-145 525.0
40 TraesCS7B01G372300 chr3D 82.573 482 58 13 2619 3080 600091564 600092039 9.130000e-108 401.0
41 TraesCS7B01G372300 chr3D 80.921 456 51 18 1001 1444 539612890 539612459 1.570000e-85 327.0
42 TraesCS7B01G372300 chr1A 82.448 621 71 16 1001 1596 503677750 503677143 5.230000e-140 508.0
43 TraesCS7B01G372300 chr3B 89.274 317 27 2 1001 1310 801612140 801611824 1.980000e-104 390.0
44 TraesCS7B01G372300 chr5D 85.625 320 28 6 1001 1310 556289612 556289301 2.630000e-83 320.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G372300 chr7B 638065170 638071017 5847 False 10800.000000 10800 100.000000 1 5848 1 chr7B.!!$F1 5847
1 TraesCS7B01G372300 chr7D 575859481 575865761 6280 False 1168.500000 4368 86.326000 326 5848 6 chr7D.!!$F2 5522
2 TraesCS7B01G372300 chr7D 577331926 577332509 583 True 514.000000 514 82.923000 1001 1596 1 chr7D.!!$R2 595
3 TraesCS7B01G372300 chr7D 435180103 435180704 601 False 486.000000 486 81.965000 1001 1596 1 chr7D.!!$F1 595
4 TraesCS7B01G372300 chr7A 666598337 666607784 9447 False 603.494118 2880 90.530824 1 5848 17 chr7A.!!$F1 5847
5 TraesCS7B01G372300 chr7A 69159389 69159984 595 True 492.000000 492 82.315000 1001 1596 1 chr7A.!!$R1 595
6 TraesCS7B01G372300 chr4D 347174280 347174975 695 True 590.000000 590 82.483000 1001 1704 1 chr4D.!!$R1 703
7 TraesCS7B01G372300 chr6A 385571359 385571966 607 True 531.000000 531 83.119000 1001 1596 1 chr6A.!!$R1 595
8 TraesCS7B01G372300 chr1B 671831697 671832261 564 False 527.000000 527 84.083000 1001 1557 1 chr1B.!!$F1 556
9 TraesCS7B01G372300 chr3D 584381152 584381754 602 True 525.000000 525 82.955000 1001 1596 1 chr3D.!!$R2 595
10 TraesCS7B01G372300 chr1A 503677143 503677750 607 True 508.000000 508 82.448000 1001 1596 1 chr1A.!!$R1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 1847 0.033504 TGCACGAAGAGAACTGGTCC 59.966 55.000 0.00 0.00 0.00 4.46 F
333 1863 0.043310 GTCCGATACATGAAACGCGC 60.043 55.000 5.73 0.00 0.00 6.86 F
606 3925 0.240145 TGTACAGTGTTCCTCGCTCG 59.760 55.000 0.00 0.00 34.33 5.03 F
1379 4798 0.256177 TGGTGTGCTGTGGTTAACCA 59.744 50.000 23.69 23.69 45.30 3.67 F
2083 5573 0.113580 GGGGTTTAGGTTTGCCCAGA 59.886 55.000 0.00 0.00 42.79 3.86 F
2093 5583 0.961019 TTTGCCCAGAATCACACTGC 59.039 50.000 0.00 0.00 34.47 4.40 F
2488 5986 1.340248 TGTCCCTTCTTCGAGTCACAC 59.660 52.381 0.00 0.00 0.00 3.82 F
4073 7786 0.320247 AACTGCAGCAGACCTCTTCG 60.320 55.000 29.70 0.00 35.18 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1852 5341 0.036306 GACTCGAAAAAGGGGCCTCA 59.964 55.000 4.79 0.0 0.00 3.86 R
1853 5342 0.036306 TGACTCGAAAAAGGGGCCTC 59.964 55.000 0.84 0.0 0.00 4.70 R
1855 5344 0.536460 TGTGACTCGAAAAAGGGGCC 60.536 55.000 0.00 0.0 0.00 5.80 R
3364 7067 0.034337 GCCGTACAACTGGAGGTGAA 59.966 55.000 0.00 0.0 0.00 3.18 R
3551 7254 0.259938 ATCCAGTTCCTCCCATTGCC 59.740 55.000 0.00 0.0 0.00 4.52 R
3583 7295 1.142262 ACCGGGGCAGTTATTACCATC 59.858 52.381 6.32 0.0 0.00 3.51 R
4448 8161 0.387202 TGGTTGTGTTTGGAATGCCG 59.613 50.000 0.00 0.0 36.79 5.69 R
5163 8920 0.040067 GTGTGCTTGCTGTAAGGTGC 60.040 55.000 7.60 0.0 36.87 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 641 4.713792 AAAATATAGCCCCCTCTCACTG 57.286 45.455 0.00 0.00 0.00 3.66
39 642 3.352611 AATATAGCCCCCTCTCACTGT 57.647 47.619 0.00 0.00 0.00 3.55
48 651 2.222027 CCCTCTCACTGTCAAAACACC 58.778 52.381 0.00 0.00 0.00 4.16
49 652 2.421388 CCCTCTCACTGTCAAAACACCA 60.421 50.000 0.00 0.00 0.00 4.17
52 655 4.129380 CTCTCACTGTCAAAACACCATCA 58.871 43.478 0.00 0.00 0.00 3.07
79 683 1.561643 TGGTTAGCTCTGAGTGGAGG 58.438 55.000 6.53 0.00 34.21 4.30
81 685 0.176910 GTTAGCTCTGAGTGGAGGCC 59.823 60.000 6.53 0.00 34.21 5.19
82 686 0.252239 TTAGCTCTGAGTGGAGGCCA 60.252 55.000 5.01 0.00 34.21 5.36
83 687 0.685785 TAGCTCTGAGTGGAGGCCAG 60.686 60.000 5.01 0.00 32.34 4.85
84 688 1.986757 GCTCTGAGTGGAGGCCAGA 60.987 63.158 5.01 0.00 32.34 3.86
85 689 1.896694 CTCTGAGTGGAGGCCAGAC 59.103 63.158 5.01 0.00 32.34 3.51
88 692 1.077169 TCTGAGTGGAGGCCAGACTTA 59.923 52.381 5.01 0.00 32.34 2.24
90 694 1.267121 GAGTGGAGGCCAGACTTACA 58.733 55.000 5.01 0.00 32.34 2.41
92 696 1.556911 AGTGGAGGCCAGACTTACATG 59.443 52.381 5.01 0.00 32.34 3.21
95 699 1.771255 GGAGGCCAGACTTACATGGAT 59.229 52.381 5.01 0.00 39.02 3.41
96 700 2.224402 GGAGGCCAGACTTACATGGATC 60.224 54.545 5.01 0.00 39.02 3.36
97 701 2.703007 GAGGCCAGACTTACATGGATCT 59.297 50.000 5.01 0.00 39.02 2.75
98 702 2.437281 AGGCCAGACTTACATGGATCTG 59.563 50.000 5.01 1.97 39.02 2.90
103 707 3.070734 CAGACTTACATGGATCTGGGGAG 59.929 52.174 1.06 0.00 35.87 4.30
104 708 2.370189 GACTTACATGGATCTGGGGAGG 59.630 54.545 0.00 0.00 0.00 4.30
105 709 2.293856 ACTTACATGGATCTGGGGAGGT 60.294 50.000 0.00 0.00 0.00 3.85
112 1627 0.909610 GATCTGGGGAGGTGGACACA 60.910 60.000 4.69 0.00 0.00 3.72
126 1641 0.384309 GACACATGGCAGCATGATGG 59.616 55.000 13.73 0.00 39.69 3.51
129 1644 1.107538 ACATGGCAGCATGATGGCTC 61.108 55.000 33.36 8.70 43.68 4.70
132 1647 1.153025 GGCAGCATGATGGCTCTCA 60.153 57.895 28.18 0.00 43.68 3.27
140 1655 3.746751 GCATGATGGCTCTCAATGGTAGT 60.747 47.826 0.00 0.00 0.00 2.73
141 1656 3.548745 TGATGGCTCTCAATGGTAGTG 57.451 47.619 0.00 0.00 0.00 2.74
144 1659 2.256306 TGGCTCTCAATGGTAGTGTGA 58.744 47.619 0.00 0.00 0.00 3.58
145 1660 2.840038 TGGCTCTCAATGGTAGTGTGAT 59.160 45.455 0.00 0.00 0.00 3.06
147 1662 3.369892 GGCTCTCAATGGTAGTGTGATGT 60.370 47.826 0.00 0.00 0.00 3.06
148 1663 3.868077 GCTCTCAATGGTAGTGTGATGTC 59.132 47.826 0.00 0.00 0.00 3.06
149 1664 4.382470 GCTCTCAATGGTAGTGTGATGTCT 60.382 45.833 0.00 0.00 0.00 3.41
162 1678 4.060900 TGTGATGTCTCAAAGAAGCTGTC 58.939 43.478 0.00 0.00 31.85 3.51
164 1680 2.154854 TGTCTCAAAGAAGCTGTCGG 57.845 50.000 0.00 0.00 0.00 4.79
165 1681 1.412710 TGTCTCAAAGAAGCTGTCGGT 59.587 47.619 0.00 0.00 0.00 4.69
179 1695 0.316689 GTCGGTGACAAGCCAAAACG 60.317 55.000 0.00 0.00 32.09 3.60
184 1700 1.133407 GTGACAAGCCAAAACGTCCAA 59.867 47.619 0.00 0.00 0.00 3.53
189 1705 1.757682 AGCCAAAACGTCCAAAGACA 58.242 45.000 0.00 0.00 43.73 3.41
199 1729 4.942090 CAAAGACATTTGGCGCGT 57.058 50.000 8.43 0.00 41.80 6.01
201 1731 1.059657 CAAAGACATTTGGCGCGTCG 61.060 55.000 6.09 0.00 41.80 5.12
202 1732 2.182614 AAAGACATTTGGCGCGTCGG 62.183 55.000 6.09 0.00 34.80 4.79
209 1739 1.559149 TTTGGCGCGTCGGACTAAAC 61.559 55.000 6.09 0.00 0.00 2.01
213 1743 1.515736 CGCGTCGGACTAAACCCTC 60.516 63.158 6.57 0.00 0.00 4.30
216 1746 1.589716 CGTCGGACTAAACCCTCGGT 61.590 60.000 6.57 0.00 37.65 4.69
219 1749 0.108945 CGGACTAAACCCTCGGTGAC 60.109 60.000 0.00 0.00 35.34 3.67
221 1751 1.264295 GACTAAACCCTCGGTGACCT 58.736 55.000 0.00 0.00 35.34 3.85
226 1756 0.964358 AACCCTCGGTGACCTAGTCG 60.964 60.000 0.00 0.00 35.34 4.18
231 1761 0.678684 TCGGTGACCTAGTCGATGCA 60.679 55.000 0.00 0.00 34.95 3.96
232 1762 0.525668 CGGTGACCTAGTCGATGCAC 60.526 60.000 0.00 0.00 34.95 4.57
233 1763 0.818296 GGTGACCTAGTCGATGCACT 59.182 55.000 0.00 0.00 34.95 4.40
234 1764 1.469940 GGTGACCTAGTCGATGCACTG 60.470 57.143 0.00 0.00 34.95 3.66
235 1765 1.472878 GTGACCTAGTCGATGCACTGA 59.527 52.381 0.00 0.00 34.95 3.41
236 1766 2.094700 GTGACCTAGTCGATGCACTGAA 60.095 50.000 0.00 0.00 34.95 3.02
237 1767 2.760650 TGACCTAGTCGATGCACTGAAT 59.239 45.455 0.00 0.00 34.95 2.57
238 1768 3.181486 TGACCTAGTCGATGCACTGAATC 60.181 47.826 0.00 0.00 34.95 2.52
239 1769 2.760650 ACCTAGTCGATGCACTGAATCA 59.239 45.455 0.00 0.00 0.00 2.57
240 1770 3.119291 CCTAGTCGATGCACTGAATCAC 58.881 50.000 0.00 0.00 0.00 3.06
241 1771 2.749280 AGTCGATGCACTGAATCACA 57.251 45.000 0.00 0.00 0.00 3.58
242 1772 3.257469 AGTCGATGCACTGAATCACAT 57.743 42.857 0.00 0.00 0.00 3.21
257 1787 1.263484 TCACATACTACGCGCTAGAGC 59.737 52.381 18.36 8.60 37.78 4.09
287 1817 5.794687 TGATCGACGCATAAAACTCAAAT 57.205 34.783 0.00 0.00 0.00 2.32
290 1820 5.459110 TCGACGCATAAAACTCAAATACC 57.541 39.130 0.00 0.00 0.00 2.73
291 1821 4.031991 TCGACGCATAAAACTCAAATACCG 59.968 41.667 0.00 0.00 0.00 4.02
293 1823 3.437395 ACGCATAAAACTCAAATACCGCA 59.563 39.130 0.00 0.00 0.00 5.69
294 1824 4.028383 CGCATAAAACTCAAATACCGCAG 58.972 43.478 0.00 0.00 0.00 5.18
295 1825 4.436852 CGCATAAAACTCAAATACCGCAGT 60.437 41.667 0.00 0.00 0.00 4.40
298 1828 6.677920 GCATAAAACTCAAATACCGCAGTGAT 60.678 38.462 0.00 0.00 0.00 3.06
299 1829 4.685169 AAACTCAAATACCGCAGTGATG 57.315 40.909 0.00 0.00 0.00 3.07
300 1830 2.009774 ACTCAAATACCGCAGTGATGC 58.990 47.619 0.00 0.00 0.00 3.91
301 1831 2.009051 CTCAAATACCGCAGTGATGCA 58.991 47.619 0.00 0.00 34.41 3.96
302 1832 1.737236 TCAAATACCGCAGTGATGCAC 59.263 47.619 0.00 0.00 34.41 4.57
303 1833 0.726827 AAATACCGCAGTGATGCACG 59.273 50.000 0.00 0.00 39.64 5.34
304 1834 0.108377 AATACCGCAGTGATGCACGA 60.108 50.000 0.00 0.00 39.64 4.35
305 1835 0.108377 ATACCGCAGTGATGCACGAA 60.108 50.000 0.00 0.00 39.64 3.85
306 1836 0.735978 TACCGCAGTGATGCACGAAG 60.736 55.000 0.00 0.00 39.64 3.79
307 1837 1.737735 CCGCAGTGATGCACGAAGA 60.738 57.895 0.00 0.00 39.64 2.87
308 1838 1.690283 CCGCAGTGATGCACGAAGAG 61.690 60.000 0.00 0.00 39.64 2.85
309 1839 0.733909 CGCAGTGATGCACGAAGAGA 60.734 55.000 0.00 0.00 39.64 3.10
310 1840 1.432514 GCAGTGATGCACGAAGAGAA 58.567 50.000 0.00 0.00 39.64 2.87
311 1841 1.127582 GCAGTGATGCACGAAGAGAAC 59.872 52.381 0.00 0.00 39.64 3.01
312 1842 2.681706 CAGTGATGCACGAAGAGAACT 58.318 47.619 0.00 0.00 39.64 3.01
313 1843 2.411069 CAGTGATGCACGAAGAGAACTG 59.589 50.000 0.00 0.00 39.64 3.16
314 1844 1.728971 GTGATGCACGAAGAGAACTGG 59.271 52.381 0.00 0.00 0.00 4.00
315 1845 1.344438 TGATGCACGAAGAGAACTGGT 59.656 47.619 0.00 0.00 0.00 4.00
316 1846 1.996191 GATGCACGAAGAGAACTGGTC 59.004 52.381 0.00 0.00 0.00 4.02
317 1847 0.033504 TGCACGAAGAGAACTGGTCC 59.966 55.000 0.00 0.00 0.00 4.46
318 1848 1.009389 GCACGAAGAGAACTGGTCCG 61.009 60.000 0.00 0.00 0.00 4.79
320 1850 1.202582 CACGAAGAGAACTGGTCCGAT 59.797 52.381 0.00 0.00 0.00 4.18
323 1853 2.422479 CGAAGAGAACTGGTCCGATACA 59.578 50.000 0.00 0.00 0.00 2.29
324 1854 3.066900 CGAAGAGAACTGGTCCGATACAT 59.933 47.826 0.00 0.00 0.00 2.29
330 1860 2.888594 ACTGGTCCGATACATGAAACG 58.111 47.619 0.00 1.34 0.00 3.60
331 1861 1.593006 CTGGTCCGATACATGAAACGC 59.407 52.381 0.00 0.00 0.00 4.84
333 1863 0.043310 GTCCGATACATGAAACGCGC 60.043 55.000 5.73 0.00 0.00 6.86
339 1869 2.478547 TACATGAAACGCGCGATCTA 57.521 45.000 39.36 21.84 0.00 1.98
341 1871 1.996898 ACATGAAACGCGCGATCTAAA 59.003 42.857 39.36 17.66 0.00 1.85
346 1876 0.928229 AACGCGCGATCTAAACCATC 59.072 50.000 39.36 0.00 0.00 3.51
349 1879 1.714460 CGCGCGATCTAAACCATCTAC 59.286 52.381 28.94 0.00 0.00 2.59
390 1920 2.684499 GGAAGGCAGGGAGAAGGGG 61.684 68.421 0.00 0.00 0.00 4.79
391 1921 3.342477 AAGGCAGGGAGAAGGGGC 61.342 66.667 0.00 0.00 0.00 5.80
454 1985 3.512724 CCCACGTAACTTCTTTCCTCCTA 59.487 47.826 0.00 0.00 0.00 2.94
511 2957 0.597568 CAGCCACATCTTTTTCCGCA 59.402 50.000 0.00 0.00 0.00 5.69
528 2974 2.087009 CAGAGTTCGTCGCCGGAAC 61.087 63.158 5.05 0.00 33.95 3.62
588 3907 0.804989 GGAGCCATTTTCCTCGTGTG 59.195 55.000 0.00 0.00 0.00 3.82
606 3925 0.240145 TGTACAGTGTTCCTCGCTCG 59.760 55.000 0.00 0.00 34.33 5.03
623 3942 2.504244 GTTCTCGACGCCGACCTG 60.504 66.667 0.00 0.00 40.30 4.00
634 3956 3.391382 CGACCTGTCTCCCACCCC 61.391 72.222 0.00 0.00 0.00 4.95
644 3966 4.483243 CCCACCCCGAATCCACCG 62.483 72.222 0.00 0.00 0.00 4.94
666 3988 1.225368 CGGTCAAAATCACGTCGCG 60.225 57.895 0.00 0.00 0.00 5.87
707 4029 2.802414 CGACCCGTTCGTTCGTCC 60.802 66.667 5.65 0.00 43.24 4.79
708 4030 2.802414 GACCCGTTCGTTCGTCCG 60.802 66.667 0.00 0.00 0.00 4.79
709 4031 3.542629 GACCCGTTCGTTCGTCCGT 62.543 63.158 0.00 0.00 0.00 4.69
770 4129 1.374758 GCCCAGTGACGACAGAAGG 60.375 63.158 0.00 0.00 0.00 3.46
771 4130 1.374758 CCCAGTGACGACAGAAGGC 60.375 63.158 0.00 0.00 0.00 4.35
881 4246 2.955022 TACGGCTACCTCTCTCCGGC 62.955 65.000 0.00 0.00 45.58 6.13
885 4250 4.153330 TACCTCTCTCCGGCCCCC 62.153 72.222 0.00 0.00 0.00 5.40
898 4269 3.756783 CCCCCTCCTCCTCCTCGT 61.757 72.222 0.00 0.00 0.00 4.18
920 4291 1.228306 TCCCATTTCAAACGGCCGT 60.228 52.632 28.70 28.70 0.00 5.68
922 4293 1.211709 CCATTTCAAACGGCCGTCC 59.788 57.895 34.29 0.00 0.00 4.79
923 4294 1.211709 CATTTCAAACGGCCGTCCC 59.788 57.895 34.29 0.00 0.00 4.46
924 4295 1.974875 ATTTCAAACGGCCGTCCCC 60.975 57.895 34.29 0.00 0.00 4.81
959 4330 2.887360 GTTCCCGTTCCGATCCGA 59.113 61.111 0.00 0.00 0.00 4.55
1153 4534 0.691413 CCAACCCTACCTCTCCCTCC 60.691 65.000 0.00 0.00 0.00 4.30
1163 4570 3.039526 CTCCCTCCCCCTCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
1166 4573 2.612251 CCTCCCCCTCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
1167 4574 2.612251 CTCCCCCTCTCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
1168 4575 3.036959 TCCCCCTCTCCCTCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
1169 4576 4.179599 CCCCCTCTCCCTCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1170 4577 4.179599 CCCCTCTCCCTCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
1171 4578 4.548513 CCCTCTCCCTCTCCCCCG 62.549 77.778 0.00 0.00 0.00 5.73
1223 4630 0.740737 CCCAGGCGGTGATGAATTTC 59.259 55.000 0.00 0.00 0.00 2.17
1325 4737 6.016777 GGAGAAAGGTACGTATCCTCGATTTA 60.017 42.308 14.49 0.00 33.76 1.40
1330 4742 4.083057 GGTACGTATCCTCGATTTACTCCC 60.083 50.000 0.00 0.00 34.70 4.30
1338 4750 4.585162 TCCTCGATTTACTCCCTCAGATTC 59.415 45.833 0.00 0.00 0.00 2.52
1345 4757 1.067821 ACTCCCTCAGATTCGCGATTC 59.932 52.381 20.40 20.40 0.00 2.52
1351 4763 3.702555 GATTCGCGATTCCGGCCG 61.703 66.667 21.04 21.04 36.06 6.13
1352 4764 4.524318 ATTCGCGATTCCGGCCGT 62.524 61.111 26.12 5.12 36.06 5.68
1356 4768 2.028484 GCGATTCCGGCCGTATGA 59.972 61.111 26.12 11.89 36.06 2.15
1379 4798 0.256177 TGGTGTGCTGTGGTTAACCA 59.744 50.000 23.69 23.69 45.30 3.67
1394 4813 0.379316 AACCACTTTGCCGTTCGTTC 59.621 50.000 0.00 0.00 0.00 3.95
1395 4815 1.281656 CCACTTTGCCGTTCGTTCC 59.718 57.895 0.00 0.00 0.00 3.62
1487 4908 1.342076 ACACCGATGAGGAGCTTAGGA 60.342 52.381 0.00 0.00 45.00 2.94
1499 4920 1.064611 AGCTTAGGAGAGAGGTACGCA 60.065 52.381 0.00 0.00 0.00 5.24
1547 4968 5.172934 TCTGTTACTTTTTCAGTCACACGT 58.827 37.500 0.00 0.00 35.13 4.49
1549 4970 4.093703 TGTTACTTTTTCAGTCACACGTGG 59.906 41.667 21.57 9.11 35.13 4.94
1557 4985 1.125093 AGTCACACGTGGGGAATGGA 61.125 55.000 19.60 0.00 0.00 3.41
1567 4995 1.384222 GGGGAATGGATGTGCGGTTC 61.384 60.000 0.00 0.00 0.00 3.62
1575 5003 1.467342 GGATGTGCGGTTCTTGTTACC 59.533 52.381 0.00 0.00 0.00 2.85
1596 5028 2.416972 CGTCAGGTTGTAGTTCCTAGGC 60.417 54.545 2.96 0.00 32.26 3.93
1707 5140 1.759445 CAGTGCCTGGTGATAGCTAGT 59.241 52.381 0.00 0.00 0.00 2.57
1708 5141 2.959030 CAGTGCCTGGTGATAGCTAGTA 59.041 50.000 0.00 0.00 0.00 1.82
1709 5142 2.959707 AGTGCCTGGTGATAGCTAGTAC 59.040 50.000 0.00 0.46 0.00 2.73
1711 5144 2.959030 TGCCTGGTGATAGCTAGTACAG 59.041 50.000 0.00 5.20 0.00 2.74
1762 5251 4.277672 AGGCTGATGTTGTGATTGCATATC 59.722 41.667 0.00 0.00 0.00 1.63
1779 5268 7.136822 TGCATATCTGTTACTGTATTTCCCT 57.863 36.000 0.00 0.00 0.00 4.20
1788 5277 2.016318 CTGTATTTCCCTGATGCGCAA 58.984 47.619 17.11 0.00 0.00 4.85
1791 5280 2.368655 ATTTCCCTGATGCGCAAAAC 57.631 45.000 17.11 10.06 0.00 2.43
1800 5289 0.455972 ATGCGCAAAACGTATGTGGC 60.456 50.000 17.11 12.23 45.93 5.01
1808 5297 5.084055 GCAAAACGTATGTGGCTAGTTTAC 58.916 41.667 0.00 0.00 34.42 2.01
1818 5307 4.081642 TGTGGCTAGTTTACATGGAGAGAC 60.082 45.833 0.00 0.00 0.00 3.36
1821 5310 6.041069 GTGGCTAGTTTACATGGAGAGACTAT 59.959 42.308 0.00 0.00 0.00 2.12
1830 5319 5.651530 ACATGGAGAGACTATGTTTACACG 58.348 41.667 0.00 0.00 45.94 4.49
1850 5339 6.570692 ACACGGTACCTAATAACTGAATGAG 58.429 40.000 10.90 0.00 0.00 2.90
1851 5340 5.462398 CACGGTACCTAATAACTGAATGAGC 59.538 44.000 10.90 0.00 0.00 4.26
1852 5341 5.363005 ACGGTACCTAATAACTGAATGAGCT 59.637 40.000 10.90 0.00 0.00 4.09
1853 5342 5.692204 CGGTACCTAATAACTGAATGAGCTG 59.308 44.000 10.90 0.00 0.00 4.24
1855 5344 6.926272 GGTACCTAATAACTGAATGAGCTGAG 59.074 42.308 4.06 0.00 0.00 3.35
1857 5346 4.754114 CCTAATAACTGAATGAGCTGAGGC 59.246 45.833 0.00 0.00 39.06 4.70
1862 5351 1.210204 TGAATGAGCTGAGGCCCCTT 61.210 55.000 0.00 0.00 39.73 3.95
1866 5355 0.251341 TGAGCTGAGGCCCCTTTTTC 60.251 55.000 0.00 0.00 39.73 2.29
1941 5430 2.097791 AGTTCGACGGATCTAGCTTCAC 59.902 50.000 0.00 0.00 0.00 3.18
1985 5475 4.338379 CCTTTAGGTACCCATCTGCTAC 57.662 50.000 8.74 0.00 0.00 3.58
1986 5476 3.709653 CCTTTAGGTACCCATCTGCTACA 59.290 47.826 8.74 0.00 0.00 2.74
1987 5477 4.202264 CCTTTAGGTACCCATCTGCTACAG 60.202 50.000 8.74 0.00 0.00 2.74
1988 5478 1.123928 AGGTACCCATCTGCTACAGC 58.876 55.000 8.74 0.00 42.50 4.40
2037 5527 3.261580 TGATCGTGCCTGTATTTCTGTG 58.738 45.455 0.00 0.00 0.00 3.66
2083 5573 0.113580 GGGGTTTAGGTTTGCCCAGA 59.886 55.000 0.00 0.00 42.79 3.86
2093 5583 0.961019 TTTGCCCAGAATCACACTGC 59.039 50.000 0.00 0.00 34.47 4.40
2135 5625 4.102996 ACAATTTTCCATGACAAGGGCTTT 59.897 37.500 0.00 0.00 0.00 3.51
2366 5864 4.778213 TCTGGAATTTCATAGACTGGGG 57.222 45.455 0.00 0.00 0.00 4.96
2367 5865 4.111577 TCTGGAATTTCATAGACTGGGGT 58.888 43.478 0.00 0.00 0.00 4.95
2368 5866 5.285401 TCTGGAATTTCATAGACTGGGGTA 58.715 41.667 0.00 0.00 0.00 3.69
2370 5868 6.389869 TCTGGAATTTCATAGACTGGGGTATT 59.610 38.462 0.00 0.00 0.00 1.89
2371 5869 6.364701 TGGAATTTCATAGACTGGGGTATTG 58.635 40.000 0.00 0.00 0.00 1.90
2372 5870 5.241728 GGAATTTCATAGACTGGGGTATTGC 59.758 44.000 0.00 0.00 0.00 3.56
2429 5927 8.183104 TGTATGTGGATAGTTTAGATGGAGAG 57.817 38.462 0.00 0.00 0.00 3.20
2488 5986 1.340248 TGTCCCTTCTTCGAGTCACAC 59.660 52.381 0.00 0.00 0.00 3.82
2493 5991 2.733552 CCTTCTTCGAGTCACACATGTG 59.266 50.000 24.25 24.25 46.91 3.21
2517 6015 4.337836 GGGAATGTTTGTGCAACCATTTTT 59.662 37.500 8.65 0.00 33.97 1.94
2519 6017 6.206438 GGGAATGTTTGTGCAACCATTTTTAT 59.794 34.615 8.65 0.00 33.97 1.40
2571 6069 9.528018 AGGTTCATTGTTTTATTGTAGTTTGTG 57.472 29.630 0.00 0.00 0.00 3.33
2572 6070 9.308318 GGTTCATTGTTTTATTGTAGTTTGTGT 57.692 29.630 0.00 0.00 0.00 3.72
2603 6101 6.636454 AGGTTTCCATCTGATACAAGGTAA 57.364 37.500 0.00 0.00 0.00 2.85
2637 6135 7.599998 GGTTGAATTTGATTGTGCTGTATTTCT 59.400 33.333 0.00 0.00 0.00 2.52
2692 6190 9.054580 AGAGGTTTAAGTATACCCAGTATTTGT 57.945 33.333 0.00 0.00 34.90 2.83
2708 6206 7.130917 CAGTATTTGTACTGTACCTACTAGCG 58.869 42.308 14.91 5.24 41.75 4.26
2836 6334 3.193479 GGAATTTCATGGACTGGGTGTTC 59.807 47.826 0.00 0.00 0.00 3.18
2959 6457 5.989168 GCCAATATACACACAGCTGTATGTA 59.011 40.000 33.46 33.46 41.47 2.29
3032 6730 7.868415 GTCCTGTAGCTGTATAAGTAAATCCAG 59.132 40.741 0.00 0.00 0.00 3.86
3109 6807 1.691196 ACGCATTGGAACATATGGGG 58.309 50.000 7.80 0.00 40.78 4.96
3122 6820 3.785887 ACATATGGGGCTTAGTCCAGAAA 59.214 43.478 4.86 0.00 36.38 2.52
3151 6849 9.803507 TTCATCGTTCCTAGTCCTATCTTATTA 57.196 33.333 0.00 0.00 0.00 0.98
3168 6866 5.248477 TCTTATTAGGAAAGCTCACTGGTGT 59.752 40.000 0.00 0.00 0.00 4.16
3208 6908 8.997323 CAAAATGTAGTCTGTTCTGATCTCTTT 58.003 33.333 0.00 0.00 0.00 2.52
3210 6910 9.566432 AAATGTAGTCTGTTCTGATCTCTTTTT 57.434 29.630 0.00 0.00 0.00 1.94
3211 6911 8.770438 ATGTAGTCTGTTCTGATCTCTTTTTC 57.230 34.615 0.00 0.00 0.00 2.29
3346 7049 7.039152 TCCTAATTTGAATTTTCATGTGGCTCA 60.039 33.333 0.00 0.00 37.00 4.26
3364 7067 1.922447 TCATAAATCCACCCAGGCAGT 59.078 47.619 0.00 0.00 37.29 4.40
3411 7114 1.744320 GCAAACCCCGGCTGAACTTT 61.744 55.000 0.00 0.00 0.00 2.66
3455 7158 5.808366 ATTCTGAATCCGCTAATGAGGTA 57.192 39.130 0.00 0.00 34.59 3.08
3551 7254 2.750712 TGACATGTCCATCAATGCACTG 59.249 45.455 22.85 0.00 0.00 3.66
3583 7295 6.264067 GGAGGAACTGGATTTAATTCATCTGG 59.736 42.308 0.20 0.00 41.55 3.86
3601 7313 1.142060 TGGATGGTAATAACTGCCCCG 59.858 52.381 0.00 0.00 0.00 5.73
3703 7416 2.609427 TGCGAGGAGGATTTGATGAG 57.391 50.000 0.00 0.00 0.00 2.90
3721 7434 4.857871 TGAGTGAACTTGAAGTTTCACG 57.142 40.909 22.51 0.00 38.80 4.35
3761 7474 0.456221 TTCCTCGATCAGTTCTCCGC 59.544 55.000 0.00 0.00 0.00 5.54
3762 7475 0.679960 TCCTCGATCAGTTCTCCGCA 60.680 55.000 0.00 0.00 0.00 5.69
3880 7593 4.012374 CCTGGAACAATGTATGCTTCACT 58.988 43.478 0.00 0.00 38.70 3.41
4040 7753 4.500716 CCAAAACGTACAAATTTGGGAGCT 60.501 41.667 21.74 3.45 45.94 4.09
4073 7786 0.320247 AACTGCAGCAGACCTCTTCG 60.320 55.000 29.70 0.00 35.18 3.79
4237 7950 7.067859 TGGAGCTCTATCAAAATCAAATTCAGG 59.932 37.037 14.64 0.00 0.00 3.86
4274 7987 1.294780 GAGTCTGACCCACTGGCTG 59.705 63.158 3.76 0.00 32.77 4.85
4336 8049 0.976641 TCATCTGCTTCCGACCAACT 59.023 50.000 0.00 0.00 0.00 3.16
4339 8052 1.597854 CTGCTTCCGACCAACTGCA 60.598 57.895 0.00 0.00 0.00 4.41
4348 8061 2.558378 CGACCAACTGCATGATGAGAT 58.442 47.619 0.00 0.00 0.00 2.75
4350 8063 2.543012 GACCAACTGCATGATGAGATCG 59.457 50.000 0.00 0.00 0.00 3.69
4370 8083 1.003233 GCTTTTCACGGAGAGCCCT 60.003 57.895 0.00 0.00 0.00 5.19
4448 8161 2.676471 AAGGCATGGGACGGCAAC 60.676 61.111 0.00 0.00 32.78 4.17
4463 8176 0.249238 GCAACGGCATTCCAAACACA 60.249 50.000 0.00 0.00 40.72 3.72
4498 8213 2.171448 AGGAGGTATGTGCTGATGGTTC 59.829 50.000 0.00 0.00 0.00 3.62
4501 8216 3.548770 AGGTATGTGCTGATGGTTCATG 58.451 45.455 0.00 0.00 0.00 3.07
4515 8230 5.160607 TGGTTCATGGGTTTGTCTAGTAG 57.839 43.478 0.00 0.00 0.00 2.57
4516 8231 3.939592 GGTTCATGGGTTTGTCTAGTAGC 59.060 47.826 0.00 0.00 0.00 3.58
4529 8244 2.124903 CTAGTAGCGCATACCCAAACG 58.875 52.381 11.47 0.00 34.67 3.60
4536 8251 2.011222 CGCATACCCAAACGTATGGTT 58.989 47.619 8.63 0.00 43.85 3.67
4542 8257 4.834357 ACCCAAACGTATGGTTTAACAC 57.166 40.909 0.00 0.00 46.90 3.32
4621 8336 2.202676 CGTTCGAGGAGAGGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
4630 8345 1.220477 GAGAGGCTGCTGAGGGTTC 59.780 63.158 0.00 0.00 0.00 3.62
4649 8364 0.031857 CTGTCGGATGAGCAGCCTAG 59.968 60.000 3.05 0.00 33.99 3.02
4698 8413 2.208431 TGAACGCAATTTTGGCCTTTG 58.792 42.857 3.32 4.13 0.00 2.77
4699 8414 2.209273 GAACGCAATTTTGGCCTTTGT 58.791 42.857 3.32 0.00 0.00 2.83
4704 8419 3.790288 CGCAATTTTGGCCTTTGTTTTTG 59.210 39.130 3.32 0.24 0.00 2.44
4705 8420 3.551082 GCAATTTTGGCCTTTGTTTTTGC 59.449 39.130 3.32 6.90 0.00 3.68
4706 8421 4.677514 GCAATTTTGGCCTTTGTTTTTGCT 60.678 37.500 3.32 0.00 35.34 3.91
4707 8422 5.409211 CAATTTTGGCCTTTGTTTTTGCTT 58.591 33.333 3.32 0.00 0.00 3.91
4708 8423 5.657826 ATTTTGGCCTTTGTTTTTGCTTT 57.342 30.435 3.32 0.00 0.00 3.51
4736 8451 2.094182 AGCTCTTTTGCCATGCATCAAG 60.094 45.455 0.00 0.00 38.76 3.02
4749 8464 1.098050 CATCAAGCTACTTGCCACCC 58.902 55.000 2.41 0.00 44.23 4.61
4755 8470 1.767692 CTACTTGCCACCCAACCCT 59.232 57.895 0.00 0.00 0.00 4.34
4774 8493 2.523015 CTTTGCGCATTTCACTGATCC 58.477 47.619 12.75 0.00 0.00 3.36
4805 8524 5.248640 ACATCATGGTTCTAACACAGGAAG 58.751 41.667 0.00 0.00 0.00 3.46
4826 8545 5.337578 AGCTTATCAGAGGAGACTTGTTC 57.662 43.478 0.00 0.00 44.43 3.18
4857 8576 0.543749 GGAGACTTGATGGTGGAGGG 59.456 60.000 0.00 0.00 0.00 4.30
4903 8660 1.475682 CCTTTGAAGCTCCTGAATGCC 59.524 52.381 0.00 0.00 0.00 4.40
4935 8692 5.772393 TTTGTCACTCCACCATATACCTT 57.228 39.130 0.00 0.00 0.00 3.50
4937 8694 5.097742 TGTCACTCCACCATATACCTTTG 57.902 43.478 0.00 0.00 0.00 2.77
4938 8695 4.780554 TGTCACTCCACCATATACCTTTGA 59.219 41.667 0.00 0.00 0.00 2.69
4939 8696 5.249622 TGTCACTCCACCATATACCTTTGAA 59.750 40.000 0.00 0.00 0.00 2.69
4940 8697 5.585047 GTCACTCCACCATATACCTTTGAAC 59.415 44.000 0.00 0.00 0.00 3.18
4941 8698 4.881850 CACTCCACCATATACCTTTGAACC 59.118 45.833 0.00 0.00 0.00 3.62
4942 8699 4.788617 ACTCCACCATATACCTTTGAACCT 59.211 41.667 0.00 0.00 0.00 3.50
4943 8700 5.110814 TCCACCATATACCTTTGAACCTG 57.889 43.478 0.00 0.00 0.00 4.00
4944 8701 3.632145 CCACCATATACCTTTGAACCTGC 59.368 47.826 0.00 0.00 0.00 4.85
5020 8777 5.360591 AGGTGTTATACTGCTGCTATGAAC 58.639 41.667 0.00 0.07 0.00 3.18
5081 8838 4.785511 TGTTACTTAGCTGTCCTGTCTC 57.214 45.455 0.00 0.00 0.00 3.36
5089 8846 2.823154 AGCTGTCCTGTCTCTCTGTAAC 59.177 50.000 0.00 0.00 0.00 2.50
5135 8892 2.212652 TGTTGTAGCTTGTGACTGCTG 58.787 47.619 12.37 0.00 40.08 4.41
5163 8920 1.135046 CAGTGAGTGAGCTGACGTTG 58.865 55.000 0.00 0.00 33.97 4.10
5230 8988 4.278419 GCCTTGTCCTGAACAGTTGTTATT 59.722 41.667 0.00 0.00 39.58 1.40
5236 8994 7.001674 TGTCCTGAACAGTTGTTATTACCAAT 58.998 34.615 0.00 0.00 38.56 3.16
5245 9003 9.744468 ACAGTTGTTATTACCAATTTCAGTTTC 57.256 29.630 0.00 0.00 0.00 2.78
5301 9087 6.072728 TGTTACCAAATTCAGTTCTGGAATCG 60.073 38.462 0.00 0.00 34.02 3.34
5302 9088 3.758554 ACCAAATTCAGTTCTGGAATCGG 59.241 43.478 0.00 0.00 34.02 4.18
5304 9090 3.356529 AATTCAGTTCTGGAATCGGCT 57.643 42.857 0.00 0.00 34.02 5.52
5305 9091 2.099141 TTCAGTTCTGGAATCGGCTG 57.901 50.000 0.00 0.00 0.00 4.85
5306 9092 0.976641 TCAGTTCTGGAATCGGCTGT 59.023 50.000 0.00 0.00 0.00 4.40
5307 9093 1.081892 CAGTTCTGGAATCGGCTGTG 58.918 55.000 0.00 0.00 0.00 3.66
5308 9094 0.687354 AGTTCTGGAATCGGCTGTGT 59.313 50.000 0.00 0.00 0.00 3.72
5330 9127 6.921307 GTGTTCATGTTCCTCGGTTTTAAAAT 59.079 34.615 3.52 0.00 0.00 1.82
5331 9128 8.077386 GTGTTCATGTTCCTCGGTTTTAAAATA 58.923 33.333 3.52 0.00 0.00 1.40
5346 9144 2.851263 AAATACTCGGCTGTGTTCCA 57.149 45.000 5.42 0.00 0.00 3.53
5383 9181 4.701956 AACTGGCATGCTGTTATACAAC 57.298 40.909 18.92 0.00 35.06 3.32
5431 9231 1.375908 GCGACTGGCATCTGAACCA 60.376 57.895 3.16 3.16 42.87 3.67
5478 9278 6.834168 TGTTTCAACTTCTTTTTCCTGTCT 57.166 33.333 0.00 0.00 0.00 3.41
5479 9279 6.620678 TGTTTCAACTTCTTTTTCCTGTCTG 58.379 36.000 0.00 0.00 0.00 3.51
5551 9390 4.486125 ACTCATTGCCAAACACCTTTTT 57.514 36.364 0.00 0.00 0.00 1.94
5552 9391 4.441792 ACTCATTGCCAAACACCTTTTTC 58.558 39.130 0.00 0.00 0.00 2.29
5553 9392 4.162131 ACTCATTGCCAAACACCTTTTTCT 59.838 37.500 0.00 0.00 0.00 2.52
5555 9394 2.977772 TGCCAAACACCTTTTTCTGG 57.022 45.000 0.00 0.00 0.00 3.86
5556 9395 1.134551 TGCCAAACACCTTTTTCTGGC 60.135 47.619 3.94 3.94 41.18 4.85
5557 9396 1.851658 CCAAACACCTTTTTCTGGCG 58.148 50.000 0.00 0.00 0.00 5.69
5558 9397 1.208259 CAAACACCTTTTTCTGGCGC 58.792 50.000 0.00 0.00 0.00 6.53
5648 9487 1.098712 ATCTCTCTGCGACGGTCTCC 61.099 60.000 6.57 0.00 0.00 3.71
5652 9491 1.711060 CTCTGCGACGGTCTCCTCTC 61.711 65.000 6.57 0.00 0.00 3.20
5711 9550 4.060205 CAAACAAAATCTTGCCCTGGAAG 58.940 43.478 0.00 0.00 35.84 3.46
5713 9552 0.890683 AAAATCTTGCCCTGGAAGCG 59.109 50.000 0.00 0.00 0.00 4.68
5720 9559 0.107703 TGCCCTGGAAGCGTATGAAG 60.108 55.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 623 2.180086 TGACAGTGAGAGGGGGCTATAT 59.820 50.000 0.00 0.00 0.00 0.86
38 641 5.920273 CCATGTAAGTTGATGGTGTTTTGAC 59.080 40.000 7.34 0.00 35.33 3.18
39 642 6.083098 CCATGTAAGTTGATGGTGTTTTGA 57.917 37.500 7.34 0.00 35.33 2.69
48 651 6.108687 TCAGAGCTAACCATGTAAGTTGATG 58.891 40.000 0.00 0.00 0.00 3.07
49 652 6.070538 ACTCAGAGCTAACCATGTAAGTTGAT 60.071 38.462 0.00 0.00 0.00 2.57
52 655 5.482908 CACTCAGAGCTAACCATGTAAGTT 58.517 41.667 0.00 0.00 0.00 2.66
81 685 3.041211 TCCCCAGATCCATGTAAGTCTG 58.959 50.000 0.00 0.00 38.20 3.51
82 686 3.312890 CTCCCCAGATCCATGTAAGTCT 58.687 50.000 0.00 0.00 0.00 3.24
83 687 2.370189 CCTCCCCAGATCCATGTAAGTC 59.630 54.545 0.00 0.00 0.00 3.01
84 688 2.293856 ACCTCCCCAGATCCATGTAAGT 60.294 50.000 0.00 0.00 0.00 2.24
85 689 2.105477 CACCTCCCCAGATCCATGTAAG 59.895 54.545 0.00 0.00 0.00 2.34
88 692 0.990282 CCACCTCCCCAGATCCATGT 60.990 60.000 0.00 0.00 0.00 3.21
90 694 0.695803 GTCCACCTCCCCAGATCCAT 60.696 60.000 0.00 0.00 0.00 3.41
92 696 1.306997 TGTCCACCTCCCCAGATCC 60.307 63.158 0.00 0.00 0.00 3.36
95 699 1.160870 ATGTGTCCACCTCCCCAGA 59.839 57.895 0.00 0.00 0.00 3.86
96 700 1.300963 CATGTGTCCACCTCCCCAG 59.699 63.158 0.00 0.00 0.00 4.45
97 701 2.230653 CCATGTGTCCACCTCCCCA 61.231 63.158 0.00 0.00 0.00 4.96
98 702 2.677228 CCATGTGTCCACCTCCCC 59.323 66.667 0.00 0.00 0.00 4.81
99 703 2.044946 GCCATGTGTCCACCTCCC 60.045 66.667 0.00 0.00 0.00 4.30
100 704 1.377725 CTGCCATGTGTCCACCTCC 60.378 63.158 0.00 0.00 0.00 4.30
103 707 1.679977 ATGCTGCCATGTGTCCACC 60.680 57.895 0.00 0.00 0.00 4.61
104 708 1.509463 CATGCTGCCATGTGTCCAC 59.491 57.895 0.00 0.00 43.07 4.02
105 709 4.005902 CATGCTGCCATGTGTCCA 57.994 55.556 0.00 0.00 43.07 4.02
112 1627 0.537600 GAGAGCCATCATGCTGCCAT 60.538 55.000 0.00 0.00 42.95 4.40
126 1641 3.866651 ACATCACACTACCATTGAGAGC 58.133 45.455 0.00 0.00 0.00 4.09
129 1644 5.077134 TGAGACATCACACTACCATTGAG 57.923 43.478 0.00 0.00 0.00 3.02
132 1647 6.114187 TCTTTGAGACATCACACTACCATT 57.886 37.500 0.00 0.00 34.35 3.16
140 1655 4.060900 GACAGCTTCTTTGAGACATCACA 58.939 43.478 0.00 0.00 34.35 3.58
141 1656 3.122613 CGACAGCTTCTTTGAGACATCAC 59.877 47.826 0.00 0.00 34.35 3.06
144 1659 2.037772 ACCGACAGCTTCTTTGAGACAT 59.962 45.455 0.00 0.00 0.00 3.06
145 1660 1.412710 ACCGACAGCTTCTTTGAGACA 59.587 47.619 0.00 0.00 0.00 3.41
147 1662 1.686587 TCACCGACAGCTTCTTTGAGA 59.313 47.619 0.00 0.00 0.00 3.27
148 1663 1.795286 GTCACCGACAGCTTCTTTGAG 59.205 52.381 0.00 0.00 32.09 3.02
149 1664 1.138069 TGTCACCGACAGCTTCTTTGA 59.862 47.619 0.00 0.00 37.67 2.69
162 1678 0.316689 GACGTTTTGGCTTGTCACCG 60.317 55.000 0.00 0.00 0.00 4.94
164 1680 0.736053 TGGACGTTTTGGCTTGTCAC 59.264 50.000 0.00 0.00 33.04 3.67
165 1681 1.464734 TTGGACGTTTTGGCTTGTCA 58.535 45.000 0.00 0.00 33.04 3.58
184 1700 2.677003 CCGACGCGCCAAATGTCTT 61.677 57.895 5.73 0.00 0.00 3.01
189 1705 0.671163 TTTAGTCCGACGCGCCAAAT 60.671 50.000 5.73 0.00 0.00 2.32
198 1728 0.108945 CACCGAGGGTTTAGTCCGAC 60.109 60.000 0.00 0.00 31.02 4.79
199 1729 0.251297 TCACCGAGGGTTTAGTCCGA 60.251 55.000 0.00 0.00 31.02 4.55
201 1731 0.248565 GGTCACCGAGGGTTTAGTCC 59.751 60.000 0.00 0.00 31.02 3.85
202 1732 1.264295 AGGTCACCGAGGGTTTAGTC 58.736 55.000 0.00 0.00 31.02 2.59
209 1739 0.465824 ATCGACTAGGTCACCGAGGG 60.466 60.000 9.04 0.00 34.40 4.30
213 1743 0.525668 GTGCATCGACTAGGTCACCG 60.526 60.000 0.00 0.00 32.09 4.94
216 1746 1.834188 TCAGTGCATCGACTAGGTCA 58.166 50.000 0.00 0.00 32.09 4.02
219 1749 3.119291 GTGATTCAGTGCATCGACTAGG 58.881 50.000 0.00 0.00 0.00 3.02
221 1751 3.866883 TGTGATTCAGTGCATCGACTA 57.133 42.857 0.00 0.00 0.00 2.59
226 1756 4.084849 GCGTAGTATGTGATTCAGTGCATC 60.085 45.833 0.00 0.00 0.00 3.91
231 1761 2.099263 AGCGCGTAGTATGTGATTCAGT 59.901 45.455 8.43 0.00 0.00 3.41
232 1762 2.732366 AGCGCGTAGTATGTGATTCAG 58.268 47.619 8.43 0.00 0.00 3.02
233 1763 2.863401 AGCGCGTAGTATGTGATTCA 57.137 45.000 8.43 0.00 0.00 2.57
234 1764 4.143194 TCTAGCGCGTAGTATGTGATTC 57.857 45.455 8.43 0.00 0.00 2.52
235 1765 3.609644 GCTCTAGCGCGTAGTATGTGATT 60.610 47.826 8.43 0.00 0.00 2.57
236 1766 2.095668 GCTCTAGCGCGTAGTATGTGAT 60.096 50.000 8.43 2.94 0.00 3.06
237 1767 1.263484 GCTCTAGCGCGTAGTATGTGA 59.737 52.381 8.43 0.00 0.00 3.58
238 1768 1.002792 TGCTCTAGCGCGTAGTATGTG 60.003 52.381 8.43 0.00 45.83 3.21
239 1769 1.306148 TGCTCTAGCGCGTAGTATGT 58.694 50.000 8.43 0.00 45.83 2.29
240 1770 2.044860 GTTGCTCTAGCGCGTAGTATG 58.955 52.381 8.43 5.22 45.83 2.39
241 1771 1.948145 AGTTGCTCTAGCGCGTAGTAT 59.052 47.619 8.43 0.00 45.83 2.12
242 1772 1.376543 AGTTGCTCTAGCGCGTAGTA 58.623 50.000 8.43 0.00 45.83 1.82
257 1787 5.696260 TTTATGCGTCGATCAACTAGTTG 57.304 39.130 26.60 26.60 41.71 3.16
265 1795 5.794687 ATTTGAGTTTTATGCGTCGATCA 57.205 34.783 0.00 0.00 0.00 2.92
271 1801 3.437395 TGCGGTATTTGAGTTTTATGCGT 59.563 39.130 0.00 0.00 0.00 5.24
293 1823 2.611473 CCAGTTCTCTTCGTGCATCACT 60.611 50.000 0.00 0.00 31.34 3.41
294 1824 1.728971 CCAGTTCTCTTCGTGCATCAC 59.271 52.381 0.00 0.00 0.00 3.06
295 1825 1.344438 ACCAGTTCTCTTCGTGCATCA 59.656 47.619 0.00 0.00 0.00 3.07
298 1828 0.033504 GGACCAGTTCTCTTCGTGCA 59.966 55.000 0.00 0.00 0.00 4.57
299 1829 1.009389 CGGACCAGTTCTCTTCGTGC 61.009 60.000 0.00 0.00 0.00 5.34
300 1830 0.596577 TCGGACCAGTTCTCTTCGTG 59.403 55.000 0.00 0.00 0.00 4.35
301 1831 1.546961 ATCGGACCAGTTCTCTTCGT 58.453 50.000 0.00 0.00 0.00 3.85
302 1832 2.422479 TGTATCGGACCAGTTCTCTTCG 59.578 50.000 0.00 0.00 0.00 3.79
303 1833 4.098044 TCATGTATCGGACCAGTTCTCTTC 59.902 45.833 0.00 0.00 0.00 2.87
304 1834 4.023980 TCATGTATCGGACCAGTTCTCTT 58.976 43.478 0.00 0.00 0.00 2.85
305 1835 3.632333 TCATGTATCGGACCAGTTCTCT 58.368 45.455 0.00 0.00 0.00 3.10
306 1836 4.386867 TTCATGTATCGGACCAGTTCTC 57.613 45.455 0.00 0.00 0.00 2.87
307 1837 4.504858 GTTTCATGTATCGGACCAGTTCT 58.495 43.478 0.00 0.00 0.00 3.01
308 1838 3.306166 CGTTTCATGTATCGGACCAGTTC 59.694 47.826 0.00 0.00 0.00 3.01
309 1839 3.259064 CGTTTCATGTATCGGACCAGTT 58.741 45.455 0.00 0.00 0.00 3.16
310 1840 2.888594 CGTTTCATGTATCGGACCAGT 58.111 47.619 0.00 0.00 0.00 4.00
311 1841 1.593006 GCGTTTCATGTATCGGACCAG 59.407 52.381 5.18 0.00 0.00 4.00
312 1842 1.647346 GCGTTTCATGTATCGGACCA 58.353 50.000 5.18 0.00 0.00 4.02
313 1843 0.575390 CGCGTTTCATGTATCGGACC 59.425 55.000 0.00 0.00 0.00 4.46
314 1844 0.043310 GCGCGTTTCATGTATCGGAC 60.043 55.000 8.43 0.00 0.00 4.79
315 1845 1.476235 CGCGCGTTTCATGTATCGGA 61.476 55.000 24.19 0.00 0.00 4.55
316 1846 1.084290 CGCGCGTTTCATGTATCGG 60.084 57.895 24.19 0.00 0.00 4.18
317 1847 0.502695 ATCGCGCGTTTCATGTATCG 59.497 50.000 30.98 0.00 0.00 2.92
318 1848 1.787155 AGATCGCGCGTTTCATGTATC 59.213 47.619 30.98 21.24 0.00 2.24
320 1850 2.478547 TAGATCGCGCGTTTCATGTA 57.521 45.000 30.98 15.45 0.00 2.29
323 1853 1.326548 GGTTTAGATCGCGCGTTTCAT 59.673 47.619 30.98 16.23 0.00 2.57
324 1854 0.717224 GGTTTAGATCGCGCGTTTCA 59.283 50.000 30.98 11.14 0.00 2.69
330 1860 2.059541 GGTAGATGGTTTAGATCGCGC 58.940 52.381 0.00 0.00 0.00 6.86
331 1861 2.609737 GGGGTAGATGGTTTAGATCGCG 60.610 54.545 0.00 0.00 0.00 5.87
333 1863 2.609737 GCGGGGTAGATGGTTTAGATCG 60.610 54.545 0.00 0.00 0.00 3.69
339 1869 0.255033 GGAAGCGGGGTAGATGGTTT 59.745 55.000 0.00 0.00 0.00 3.27
341 1871 2.432300 CGGAAGCGGGGTAGATGGT 61.432 63.158 0.00 0.00 0.00 3.55
367 1897 2.685380 CTCCCTGCCTTCCCGAGT 60.685 66.667 0.00 0.00 0.00 4.18
392 1922 1.520787 AATTAACTCGCCGCCTCCG 60.521 57.895 0.00 0.00 0.00 4.63
393 1923 0.461339 TCAATTAACTCGCCGCCTCC 60.461 55.000 0.00 0.00 0.00 4.30
394 1924 0.651031 GTCAATTAACTCGCCGCCTC 59.349 55.000 0.00 0.00 0.00 4.70
454 1985 1.251251 GCCTCTTTGACATTGCACCT 58.749 50.000 0.00 0.00 0.00 4.00
588 3907 0.240411 ACGAGCGAGGAACACTGTAC 59.760 55.000 0.00 0.00 0.00 2.90
606 3925 2.504244 CAGGTCGGCGTCGAGAAC 60.504 66.667 14.75 6.46 46.91 3.01
621 3940 1.522569 GATTCGGGGTGGGAGACAG 59.477 63.158 0.00 0.00 0.00 3.51
623 3942 1.993391 TGGATTCGGGGTGGGAGAC 60.993 63.158 0.00 0.00 0.00 3.36
644 3966 0.452784 GACGTGATTTTGACCGCTGC 60.453 55.000 0.00 0.00 0.00 5.25
654 3976 2.731721 TGCGACGCGACGTGATTT 60.732 55.556 29.28 0.00 41.37 2.17
837 4198 1.883732 CTCGAAGAAGCTCGGGTCA 59.116 57.895 0.00 0.00 39.35 4.02
881 4246 3.756783 ACGAGGAGGAGGAGGGGG 61.757 72.222 0.00 0.00 0.00 5.40
885 4250 1.316706 GGACACACGAGGAGGAGGAG 61.317 65.000 0.00 0.00 0.00 3.69
886 4251 1.304217 GGACACACGAGGAGGAGGA 60.304 63.158 0.00 0.00 0.00 3.71
887 4252 2.352032 GGGACACACGAGGAGGAGG 61.352 68.421 0.00 0.00 0.00 4.30
1153 4534 4.179599 GGGGGAGAGGGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
1170 4577 4.554363 ATCGAAGAGCCGGACGCG 62.554 66.667 5.05 3.53 43.63 6.01
1171 4578 2.202756 AATCGAAGAGCCGGACGC 60.203 61.111 5.05 0.00 43.63 5.19
1172 4579 1.939785 CGAATCGAAGAGCCGGACG 60.940 63.158 5.05 2.05 43.63 4.79
1173 4580 0.458025 AACGAATCGAAGAGCCGGAC 60.458 55.000 10.55 0.00 43.63 4.79
1174 4581 0.179145 GAACGAATCGAAGAGCCGGA 60.179 55.000 10.55 0.00 43.63 5.14
1175 4582 2.288969 GAACGAATCGAAGAGCCGG 58.711 57.895 10.55 0.00 43.63 6.13
1219 4626 1.206578 CGCGAACGCACCAAGAAAT 59.793 52.632 18.69 0.00 42.06 2.17
1223 4630 3.036084 AGACGCGAACGCACCAAG 61.036 61.111 15.93 4.93 45.53 3.61
1325 4737 1.067821 GAATCGCGAATCTGAGGGAGT 59.932 52.381 15.24 0.00 32.91 3.85
1330 4742 1.552348 GCCGGAATCGCGAATCTGAG 61.552 60.000 29.98 21.10 34.56 3.35
1338 4750 3.403057 CATACGGCCGGAATCGCG 61.403 66.667 31.76 0.00 34.56 5.87
1345 4757 0.380378 CACCAAATTCATACGGCCGG 59.620 55.000 31.76 12.37 0.00 6.13
1351 4763 3.255642 ACCACAGCACACCAAATTCATAC 59.744 43.478 0.00 0.00 0.00 2.39
1352 4764 3.495331 ACCACAGCACACCAAATTCATA 58.505 40.909 0.00 0.00 0.00 2.15
1356 4768 3.181470 GGTTAACCACAGCACACCAAATT 60.181 43.478 20.12 0.00 35.64 1.82
1379 4798 0.591170 CATGGAACGAACGGCAAAGT 59.409 50.000 0.00 0.00 0.00 2.66
1382 4801 2.950673 GCATGGAACGAACGGCAA 59.049 55.556 0.00 0.00 0.00 4.52
1394 4813 3.659092 AACACCACGCACGCATGG 61.659 61.111 1.93 1.93 42.13 3.66
1395 4815 2.427245 CAACACCACGCACGCATG 60.427 61.111 0.00 0.00 0.00 4.06
1458 4879 1.148157 CTCATCGGTGTCATCGCCAC 61.148 60.000 0.00 0.00 43.79 5.01
1487 4908 0.182061 TCCGGTATGCGTACCTCTCT 59.818 55.000 28.30 0.00 46.84 3.10
1499 4920 2.434336 TCATTTAGCTGTGCTCCGGTAT 59.566 45.455 0.00 0.00 40.44 2.73
1547 4968 2.148723 AACCGCACATCCATTCCCCA 62.149 55.000 0.00 0.00 0.00 4.96
1549 4970 0.394352 AGAACCGCACATCCATTCCC 60.394 55.000 0.00 0.00 0.00 3.97
1567 4995 3.986277 ACTACAACCTGACGGTAACAAG 58.014 45.455 0.00 0.00 44.73 3.16
1575 5003 2.416972 GCCTAGGAACTACAACCTGACG 60.417 54.545 14.75 0.00 41.75 4.35
1709 5142 5.176406 CACAATCTGACAGTCACTGTAACTG 59.824 44.000 11.42 9.55 45.44 3.16
1711 5144 4.449068 CCACAATCTGACAGTCACTGTAAC 59.551 45.833 11.42 0.00 45.44 2.50
1762 5251 4.271049 CGCATCAGGGAAATACAGTAACAG 59.729 45.833 0.00 0.00 0.00 3.16
1779 5268 1.135831 CCACATACGTTTTGCGCATCA 60.136 47.619 12.75 0.00 46.11 3.07
1788 5277 5.353123 CCATGTAAACTAGCCACATACGTTT 59.647 40.000 0.00 0.00 31.81 3.60
1791 5280 4.689071 TCCATGTAAACTAGCCACATACG 58.311 43.478 4.63 0.00 31.81 3.06
1808 5297 5.043903 CCGTGTAAACATAGTCTCTCCATG 58.956 45.833 0.00 0.00 0.00 3.66
1818 5307 9.241317 CAGTTATTAGGTACCGTGTAAACATAG 57.759 37.037 6.18 0.94 0.00 2.23
1821 5310 7.225784 TCAGTTATTAGGTACCGTGTAAACA 57.774 36.000 6.18 0.00 0.00 2.83
1830 5319 6.817184 TCAGCTCATTCAGTTATTAGGTACC 58.183 40.000 2.73 2.73 0.00 3.34
1850 5339 1.303317 TCGAAAAAGGGGCCTCAGC 60.303 57.895 4.79 0.00 38.76 4.26
1851 5340 0.036875 ACTCGAAAAAGGGGCCTCAG 59.963 55.000 4.79 0.00 0.00 3.35
1852 5341 0.036306 GACTCGAAAAAGGGGCCTCA 59.964 55.000 4.79 0.00 0.00 3.86
1853 5342 0.036306 TGACTCGAAAAAGGGGCCTC 59.964 55.000 0.84 0.00 0.00 4.70
1855 5344 0.536460 TGTGACTCGAAAAAGGGGCC 60.536 55.000 0.00 0.00 0.00 5.80
1857 5346 1.961793 TGTGTGACTCGAAAAAGGGG 58.038 50.000 0.00 0.00 0.00 4.79
1881 5370 6.976934 AAATGGTCTTACACAAACATTCCT 57.023 33.333 0.00 0.00 0.00 3.36
1982 5472 5.599999 AAGTGATACCTTGTAGGCTGTAG 57.400 43.478 0.00 0.00 39.63 2.74
1983 5473 6.893554 TCTAAAGTGATACCTTGTAGGCTGTA 59.106 38.462 0.00 0.00 39.63 2.74
1984 5474 4.910458 AAAGTGATACCTTGTAGGCTGT 57.090 40.909 0.00 0.00 39.63 4.40
1985 5475 6.222038 TCTAAAGTGATACCTTGTAGGCTG 57.778 41.667 0.00 0.00 39.63 4.85
1986 5476 7.125811 TCAATCTAAAGTGATACCTTGTAGGCT 59.874 37.037 0.00 0.00 39.63 4.58
1987 5477 7.272978 TCAATCTAAAGTGATACCTTGTAGGC 58.727 38.462 0.00 0.00 39.63 3.93
1988 5478 9.838339 ATTCAATCTAAAGTGATACCTTGTAGG 57.162 33.333 0.00 0.00 33.41 3.18
2037 5527 9.555727 TTCCTATAAACTACCATAATGCTCAAC 57.444 33.333 0.00 0.00 0.00 3.18
2083 5573 2.834549 AGCTAGTAGGTGCAGTGTGATT 59.165 45.455 0.00 0.00 0.00 2.57
2135 5625 8.841300 TGTGCATTTGACAAAATACACTAACTA 58.159 29.630 21.75 7.82 44.93 2.24
2190 5688 5.269554 TCCAGGACCATCCTTTTATTTGT 57.730 39.130 0.00 0.00 46.91 2.83
2212 5710 9.342308 CATATACAACACCCAGTCTATGAAATT 57.658 33.333 0.00 0.00 0.00 1.82
2326 5824 5.714806 TCCAGAACCATCCTTTTATTTGGTC 59.285 40.000 0.00 0.00 41.53 4.02
2366 5864 7.883311 AGGGAAATACAGTACCATATGCAATAC 59.117 37.037 0.00 0.00 0.00 1.89
2367 5865 7.882791 CAGGGAAATACAGTACCATATGCAATA 59.117 37.037 0.00 0.00 0.00 1.90
2368 5866 6.716628 CAGGGAAATACAGTACCATATGCAAT 59.283 38.462 0.00 0.00 0.00 3.56
2370 5868 5.368230 TCAGGGAAATACAGTACCATATGCA 59.632 40.000 0.00 0.00 0.00 3.96
2371 5869 5.701290 GTCAGGGAAATACAGTACCATATGC 59.299 44.000 0.00 0.00 0.00 3.14
2372 5870 5.926542 CGTCAGGGAAATACAGTACCATATG 59.073 44.000 0.00 0.00 0.00 1.78
2488 5986 1.343789 TGCACAAACATTCCCCACATG 59.656 47.619 0.00 0.00 0.00 3.21
2493 5991 0.755686 TGGTTGCACAAACATTCCCC 59.244 50.000 0.00 0.00 40.86 4.81
2517 6015 2.756760 GTCGAACTACACTGGGACCATA 59.243 50.000 0.00 0.00 0.00 2.74
2519 6017 0.963962 GTCGAACTACACTGGGACCA 59.036 55.000 0.00 0.00 0.00 4.02
2575 6073 6.543831 CCTTGTATCAGATGGAAACCTAAAGG 59.456 42.308 0.00 0.00 42.17 3.11
2576 6074 7.112779 ACCTTGTATCAGATGGAAACCTAAAG 58.887 38.462 0.00 0.00 0.00 1.85
2577 6075 7.027874 ACCTTGTATCAGATGGAAACCTAAA 57.972 36.000 0.00 0.00 0.00 1.85
2578 6076 6.636454 ACCTTGTATCAGATGGAAACCTAA 57.364 37.500 0.00 0.00 0.00 2.69
2579 6077 7.402071 AGTTACCTTGTATCAGATGGAAACCTA 59.598 37.037 0.00 0.00 0.00 3.08
2580 6078 6.215636 AGTTACCTTGTATCAGATGGAAACCT 59.784 38.462 0.00 0.00 0.00 3.50
2581 6079 6.316390 CAGTTACCTTGTATCAGATGGAAACC 59.684 42.308 0.00 0.00 0.00 3.27
2582 6080 6.879458 ACAGTTACCTTGTATCAGATGGAAAC 59.121 38.462 0.00 0.00 0.00 2.78
2583 6081 7.016153 ACAGTTACCTTGTATCAGATGGAAA 57.984 36.000 0.00 0.00 0.00 3.13
2603 6101 5.816777 CACAATCAAATTCAACCCAAACAGT 59.183 36.000 0.00 0.00 0.00 3.55
2605 6103 4.574013 GCACAATCAAATTCAACCCAAACA 59.426 37.500 0.00 0.00 0.00 2.83
2610 6108 3.993920 ACAGCACAATCAAATTCAACCC 58.006 40.909 0.00 0.00 0.00 4.11
2637 6135 9.845740 ATATAAACTACCATAATGCTGAACACA 57.154 29.630 0.00 0.00 0.00 3.72
2692 6190 2.923121 CCACCGCTAGTAGGTACAGTA 58.077 52.381 10.92 0.00 40.59 2.74
2708 6206 3.795877 CCATGGAAAATTGTATGCCACC 58.204 45.455 5.56 0.00 0.00 4.61
2945 6443 4.071423 TGCAAATGTACATACAGCTGTGT 58.929 39.130 29.57 20.69 39.92 3.72
2990 6488 9.297037 AGCTACAGGACAATTAAAATGTAACTT 57.703 29.630 0.00 0.00 0.00 2.66
2991 6489 8.730680 CAGCTACAGGACAATTAAAATGTAACT 58.269 33.333 0.00 0.00 0.00 2.24
2992 6490 8.512138 ACAGCTACAGGACAATTAAAATGTAAC 58.488 33.333 0.00 0.00 0.00 2.50
3042 6740 4.400845 CAATGAATCAAGCTCGTGAACTG 58.599 43.478 0.00 0.00 0.00 3.16
3091 6789 0.314935 GCCCCATATGTTCCAATGCG 59.685 55.000 1.24 0.00 0.00 4.73
3109 6807 6.183309 ACGATGAAAATTTCTGGACTAAGC 57.817 37.500 7.29 0.00 0.00 3.09
3122 6820 7.604657 AGATAGGACTAGGAACGATGAAAAT 57.395 36.000 0.00 0.00 0.00 1.82
3151 6849 1.477558 CCAACACCAGTGAGCTTTCCT 60.478 52.381 4.48 0.00 0.00 3.36
3208 6908 9.651913 AAGTAAACAAATGCAGAAGAAAAGAAA 57.348 25.926 0.00 0.00 0.00 2.52
3210 6910 9.651913 AAAAGTAAACAAATGCAGAAGAAAAGA 57.348 25.926 0.00 0.00 0.00 2.52
3346 7049 2.311542 TGAACTGCCTGGGTGGATTTAT 59.688 45.455 0.00 0.00 38.35 1.40
3364 7067 0.034337 GCCGTACAACTGGAGGTGAA 59.966 55.000 0.00 0.00 0.00 3.18
3411 7114 9.685276 AGAATTACTTTCATATGACACATTCCA 57.315 29.630 4.48 0.00 36.75 3.53
3455 7158 9.799106 CAAAATTATTCCATAGATACTGTCCCT 57.201 33.333 0.00 0.00 0.00 4.20
3485 7188 9.941325 AAGAAGGCATCAGATATATGAAACTAG 57.059 33.333 3.78 0.00 31.76 2.57
3497 7200 6.239232 GCATATCCAAAAAGAAGGCATCAGAT 60.239 38.462 0.00 0.00 0.00 2.90
3551 7254 0.259938 ATCCAGTTCCTCCCATTGCC 59.740 55.000 0.00 0.00 0.00 4.52
3583 7295 1.142262 ACCGGGGCAGTTATTACCATC 59.858 52.381 6.32 0.00 0.00 3.51
3601 7313 5.784578 AAGTCCAAACACATAGGAAAACC 57.215 39.130 0.00 0.00 32.30 3.27
3703 7416 5.659048 ATCTCGTGAAACTTCAAGTTCAC 57.341 39.130 16.69 16.69 37.47 3.18
3721 7434 8.729805 AGGAACAGAATCAAGTGATTTATCTC 57.270 34.615 7.91 4.08 44.14 2.75
3788 7501 4.574013 CCATTGCAGTCAGAGAACCTATTC 59.426 45.833 0.00 0.00 34.78 1.75
3880 7593 4.725304 TCCTAGACATAGTAGACCCTGTGA 59.275 45.833 0.00 0.00 0.00 3.58
4040 7753 5.187687 TGCTGCAGTTTCTTGATATGATCA 58.812 37.500 16.64 0.00 37.55 2.92
4237 7950 0.780002 CATTGCAGCACGCTTTTCAC 59.220 50.000 0.00 0.00 43.06 3.18
4274 7987 4.761739 TCATTGTCTGTGGATGAAGGTTTC 59.238 41.667 0.00 0.00 0.00 2.78
4307 8020 2.158449 GGAAGCAGATGAAGTGACAACG 59.842 50.000 0.00 0.00 0.00 4.10
4336 8049 0.531311 AAGCGCGATCTCATCATGCA 60.531 50.000 12.10 0.00 33.11 3.96
4339 8052 2.286294 GTGAAAAGCGCGATCTCATCAT 59.714 45.455 12.10 0.00 0.00 2.45
4350 8063 2.476499 GCTCTCCGTGAAAAGCGC 59.524 61.111 0.00 0.00 0.00 5.92
4370 8083 0.601046 CAGAAGCTGCCGTGAAGACA 60.601 55.000 0.00 0.00 0.00 3.41
4442 8155 1.732683 GTTTGGAATGCCGTTGCCG 60.733 57.895 0.00 0.00 36.79 5.69
4448 8161 0.387202 TGGTTGTGTTTGGAATGCCG 59.613 50.000 0.00 0.00 36.79 5.69
4463 8176 2.132686 ACCTCCTTGTACTTGGTGGTT 58.867 47.619 18.87 8.94 44.83 3.67
4498 8213 1.933853 GCGCTACTAGACAAACCCATG 59.066 52.381 0.00 0.00 0.00 3.66
4501 8216 2.311124 ATGCGCTACTAGACAAACCC 57.689 50.000 9.73 0.00 0.00 4.11
4515 8230 0.306533 CCATACGTTTGGGTATGCGC 59.693 55.000 16.47 0.00 45.34 6.09
4516 8231 1.658994 ACCATACGTTTGGGTATGCG 58.341 50.000 25.89 5.58 45.34 4.73
4529 8244 4.931002 TGGTTAGCTCGTGTTAAACCATAC 59.069 41.667 10.31 0.00 0.00 2.39
4536 8251 6.927416 TCTTAGAATGGTTAGCTCGTGTTAA 58.073 36.000 0.00 0.00 0.00 2.01
4542 8257 5.460419 GTGACATCTTAGAATGGTTAGCTCG 59.540 44.000 0.00 0.00 0.00 5.03
4621 8336 1.135915 CTCATCCGACAGAACCCTCAG 59.864 57.143 0.00 0.00 0.00 3.35
4630 8345 0.031857 CTAGGCTGCTCATCCGACAG 59.968 60.000 0.00 0.00 34.48 3.51
4649 8364 2.677979 GGAACAAACCTCGGAGCGC 61.678 63.158 0.00 0.00 0.00 5.92
4736 8451 1.977009 GGGTTGGGTGGCAAGTAGC 60.977 63.158 0.00 0.00 44.65 3.58
4749 8464 1.139163 GTGAAATGCGCAAAGGGTTG 58.861 50.000 17.11 0.00 37.83 3.77
4755 8470 1.135717 CGGATCAGTGAAATGCGCAAA 60.136 47.619 17.11 0.00 31.33 3.68
4774 8493 2.632377 AGAACCATGATGTTAGCACCG 58.368 47.619 0.00 0.00 0.00 4.94
4805 8524 4.161377 AGGAACAAGTCTCCTCTGATAAGC 59.839 45.833 0.00 0.00 39.16 3.09
4844 8563 2.378208 TCAACATTCCCTCCACCATCAA 59.622 45.455 0.00 0.00 0.00 2.57
4857 8576 8.768955 GTTGAGGACTGACATATATCAACATTC 58.231 37.037 14.16 0.00 42.73 2.67
4935 8692 1.859302 AAGTTTGGTGGCAGGTTCAA 58.141 45.000 0.00 0.00 0.00 2.69
4937 8694 1.269051 CGAAAGTTTGGTGGCAGGTTC 60.269 52.381 0.00 0.00 0.00 3.62
4938 8695 0.744281 CGAAAGTTTGGTGGCAGGTT 59.256 50.000 0.00 0.00 0.00 3.50
4939 8696 1.734388 GCGAAAGTTTGGTGGCAGGT 61.734 55.000 0.00 0.00 0.00 4.00
4940 8697 1.007387 GCGAAAGTTTGGTGGCAGG 60.007 57.895 0.00 0.00 0.00 4.85
4941 8698 1.007387 GGCGAAAGTTTGGTGGCAG 60.007 57.895 0.00 0.00 0.00 4.85
4942 8699 2.840066 CGGCGAAAGTTTGGTGGCA 61.840 57.895 0.00 0.00 0.00 4.92
4943 8700 2.050442 CGGCGAAAGTTTGGTGGC 60.050 61.111 0.00 0.00 0.00 5.01
4944 8701 2.050442 GCGGCGAAAGTTTGGTGG 60.050 61.111 12.98 0.00 0.00 4.61
5081 8838 3.070018 CAGCAGAAAGGGTGTTACAGAG 58.930 50.000 0.00 0.00 0.00 3.35
5089 8846 1.470098 GTGTATGCAGCAGAAAGGGTG 59.530 52.381 0.00 0.00 39.22 4.61
5163 8920 0.040067 GTGTGCTTGCTGTAAGGTGC 60.040 55.000 7.60 0.00 36.87 5.01
5195 8952 1.760029 GGACAAGGCAAAAAGGGACAA 59.240 47.619 0.00 0.00 0.00 3.18
5230 8988 6.715718 TGGTAATTCCGAAACTGAAATTGGTA 59.284 34.615 0.00 0.00 39.52 3.25
5236 8994 6.001460 ACTCATGGTAATTCCGAAACTGAAA 58.999 36.000 0.00 0.00 39.52 2.69
5301 9087 0.798776 CGAGGAACATGAACACAGCC 59.201 55.000 0.00 0.00 0.00 4.85
5302 9088 0.798776 CCGAGGAACATGAACACAGC 59.201 55.000 0.00 0.00 0.00 4.40
5304 9090 2.631160 AACCGAGGAACATGAACACA 57.369 45.000 0.00 0.00 0.00 3.72
5305 9091 3.982576 AAAACCGAGGAACATGAACAC 57.017 42.857 0.00 0.00 0.00 3.32
5306 9092 6.452494 TTTTAAAACCGAGGAACATGAACA 57.548 33.333 0.00 0.00 0.00 3.18
5307 9093 8.294577 AGTATTTTAAAACCGAGGAACATGAAC 58.705 33.333 1.97 0.00 0.00 3.18
5308 9094 8.398878 AGTATTTTAAAACCGAGGAACATGAA 57.601 30.769 1.97 0.00 0.00 2.57
5346 9144 6.412362 TGCCAGTTTTGTATTTGTAACCAT 57.588 33.333 0.00 0.00 0.00 3.55
5414 9212 1.742761 AATGGTTCAGATGCCAGTCG 58.257 50.000 1.38 0.00 38.27 4.18
5415 9213 4.009675 TGTAAATGGTTCAGATGCCAGTC 58.990 43.478 1.38 0.00 38.27 3.51
5478 9278 4.403113 TGTATACGTACATCCTGCCTTTCA 59.597 41.667 0.00 0.00 35.94 2.69
5479 9279 4.940463 TGTATACGTACATCCTGCCTTTC 58.060 43.478 0.00 0.00 35.94 2.62
5494 9294 8.710551 TGCCCGTATGTAATATTTTTGTATACG 58.289 33.333 0.00 0.00 40.63 3.06
5542 9381 2.551912 CCGCGCCAGAAAAAGGTGT 61.552 57.895 0.00 0.00 38.87 4.16
5557 9396 3.391665 ATACAGAGGCAGCACCCGC 62.392 63.158 0.00 0.00 40.58 6.13
5558 9397 1.227380 GATACAGAGGCAGCACCCG 60.227 63.158 0.00 0.00 40.58 5.28
5567 9406 5.744345 GTGATTTCGTGTACAGATACAGAGG 59.256 44.000 0.00 0.00 42.06 3.69
5648 9487 1.153745 CGGTTTGAGCGGAGGAGAG 60.154 63.158 0.00 0.00 35.16 3.20
5652 9491 1.004918 AAGACGGTTTGAGCGGAGG 60.005 57.895 4.52 0.00 44.33 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.