AutoCloner

Multiple sequence alignment - TraesCS7B01G370900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G370900	chr7B	100.000	2291	0	0	1	2291	636939381	636941671	0.000000e+00	4231.0
1	TraesCS7B01G370900	chr7B	85.800	669	56	23	653	1295	636983581	636984236	0.000000e+00	673.0
2	TraesCS7B01G370900	chr7D	91.806	2148	111	29	1	2114	575407378	575409494	0.000000e+00	2931.0
3	TraesCS7B01G370900	chr7D	84.430	912	80	25	653	1518	575441257	575442152	0.000000e+00	841.0
4	TraesCS7B01G370900	chr7D	81.808	907	101	33	654	1516	574774505	574773619	0.000000e+00	702.0
5	TraesCS7B01G370900	chr7D	84.682	692	61	24	653	1314	574764524	574763848	0.000000e+00	649.0
6	TraesCS7B01G370900	chr7D	86.014	143	12	4	203	337	135249567	135249425	1.830000e-31	147.0
7	TraesCS7B01G370900	chr7D	96.970	33	1	0	185	217	7554593	7554561	3.180000e-04	56.5
8	TraesCS7B01G370900	chr7A	89.253	2075	134	42	244	2277	664999051	665001077	0.000000e+00	2514.0
9	TraesCS7B01G370900	chr7A	85.133	713	62	19	831	1518	665427555	665428248	0.000000e+00	689.0
10	TraesCS7B01G370900	chr7A	81.105	905	104	37	654	1516	664415335	664414456	0.000000e+00	662.0
11	TraesCS7B01G370900	chr7A	80.906	817	103	32	739	1516	664372197	664371395	1.520000e-166	595.0
12	TraesCS7B01G370900	chr7A	87.931	174	11	4	1	166	664998880	664999051	1.800000e-46	196.0
13	TraesCS7B01G370900	chr7A	79.866	149	22	6	192	337	134437848	134437705	4.030000e-18	102.0
14	TraesCS7B01G370900	chr7A	86.047	86	12	0	251	336	716234101	716234186	2.420000e-15	93.5
15	TraesCS7B01G370900	chr6D	78.462	130	21	6	440	563	352150239	352150367	6.790000e-11	78.7
16	TraesCS7B01G370900	chr6D	94.286	35	1	1	189	223	1562424	1562457	4.000000e-03	52.8
17	TraesCS7B01G370900	chr5B	90.909	44	2	2	189	231	533511977	533512019	8.840000e-05	58.4
18	TraesCS7B01G370900	chr4B	97.059	34	1	0	190	223	186238672	186238705	8.840000e-05	58.4
19	TraesCS7B01G370900	chr6B	88.000	50	3	3	189	236	283019002	283018954	3.180000e-04	56.5
20	TraesCS7B01G370900	chr6B	88.636	44	3	2	189	231	7146619	7146577	4.000000e-03	52.8
21	TraesCS7B01G370900	chr2B	100.000	30	0	0	195	224	11519041	11519070	3.180000e-04	56.5
22	TraesCS7B01G370900	chr3D	94.118	34	2	0	190	223	151428981	151428948	4.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G370900	chr7B	636939381	636941671	2290	False	4231	4231	100.000	1	2291	1	chr7B.!!$F1	2290
1	TraesCS7B01G370900	chr7B	636983581	636984236	655	False	673	673	85.800	653	1295	1	chr7B.!!$F2	642
2	TraesCS7B01G370900	chr7D	575407378	575409494	2116	False	2931	2931	91.806	1	2114	1	chr7D.!!$F1	2113
3	TraesCS7B01G370900	chr7D	575441257	575442152	895	False	841	841	84.430	653	1518	1	chr7D.!!$F2	865
4	TraesCS7B01G370900	chr7D	574773619	574774505	886	True	702	702	81.808	654	1516	1	chr7D.!!$R4	862
5	TraesCS7B01G370900	chr7D	574763848	574764524	676	True	649	649	84.682	653	1314	1	chr7D.!!$R3	661
6	TraesCS7B01G370900	chr7A	664998880	665001077	2197	False	1355	2514	88.592	1	2277	2	chr7A.!!$F3	2276
7	TraesCS7B01G370900	chr7A	665427555	665428248	693	False	689	689	85.133	831	1518	1	chr7A.!!$F1	687
8	TraesCS7B01G370900	chr7A	664414456	664415335	879	True	662	662	81.105	654	1516	1	chr7A.!!$R3	862
9	TraesCS7B01G370900	chr7A	664371395	664372197	802	True	595	595	80.906	739	1516	1	chr7A.!!$R2	777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
659	677	0.253327	GCTTGTAGGGGCAGCTAACT	59.747	55.0	0.0	0.0	0.0	2.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1886	2048	0.608035	ATTTTCTTTCTCCCGCGCCA	60.608	50.0	0.0	0.0	0.0	5.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	55	7.618502	AAAAGGGTTTTGGTCATTAAAACAC	57.381	32.000	13.31	10.50	46.55	3.32
53	58	6.838198	GGGTTTTGGTCATTAAAACACTTC	57.162	37.500	13.31	0.00	44.17	3.01
70	75	6.882610	ACACTTCATATTTGTTTGCAGAGA	57.117	33.333	0.00	0.00	0.00	3.10
168	181	3.264897	GCATGAGCTACACGCGGG	61.265	66.667	6.92	6.92	45.59	6.13
438	454	1.135024	GCACGTAGGGATGTAAACGGA	60.135	52.381	0.00	0.00	0.00	4.69
517	533	9.871238	AAAATTAACTATCGAGCTAACTGAAGA	57.129	29.630	0.00	0.00	0.00	2.87
603	619	9.528018	TGTTTCAACTTTTAAAATTCTAGCAGG	57.472	29.630	0.09	0.00	0.00	4.85
609	625	1.751437	AAAATTCTAGCAGGCCGACC	58.249	50.000	0.00	0.00	0.00	4.79
659	677	0.253327	GCTTGTAGGGGCAGCTAACT	59.747	55.000	0.00	0.00	0.00	2.24
693	719	8.690203	TGGTCATATTTTTCAAAGAGACTGAA	57.310	30.769	0.00	0.00	0.00	3.02
734	761	0.398318	GAAGCCAGTGGAGGTTGACT	59.602	55.000	15.20	0.00	0.00	3.41
737	767	1.451504	CCAGTGGAGGTTGACTGCA	59.548	57.895	1.68	0.00	46.04	4.41
795	882	5.960811	TCTCTCTCTTTCTCTCTCTCTCTCT	59.039	44.000	0.00	0.00	0.00	3.10
797	884	5.960811	TCTCTCTTTCTCTCTCTCTCTCTCT	59.039	44.000	0.00	0.00	0.00	3.10
800	887	8.324191	TCTCTTTCTCTCTCTCTCTCTCTAAT	57.676	38.462	0.00	0.00	0.00	1.73
803	890	8.206867	TCTTTCTCTCTCTCTCTCTCTAATCAG	58.793	40.741	0.00	0.00	0.00	2.90
914	1004	8.935844	ACATACTACACACATGTAAATTCACAG	58.064	33.333	0.00	0.00	40.84	3.66
1026	1133	3.842923	CTGATCCGGCGGCTGAGT	61.843	66.667	23.83	4.02	0.00	3.41
1169	1279	4.681978	GCACCCTTCGCTGACGGT	62.682	66.667	0.00	0.00	40.63	4.83
1340	1479	6.600882	TCGACTTCTTCAGGTAATTAAGGT	57.399	37.500	0.00	0.00	0.00	3.50
1384	1523	0.458716	GTTGACTCTCCTACGCCTGC	60.459	60.000	0.00	0.00	0.00	4.85
1581	1729	5.353123	GGTCATATGTAAGCGGAGTGAAAAA	59.647	40.000	1.90	0.00	0.00	1.94
1588	1736	6.801575	TGTAAGCGGAGTGAAAAATTTCTTT	58.198	32.000	7.36	0.00	38.02	2.52
1611	1759	2.087501	TAACTCGATTCAAGGCGCAA	57.912	45.000	10.83	0.00	0.00	4.85
1681	1837	1.620822	GCCATGACCAGGAACAAGTT	58.379	50.000	0.00	0.00	0.00	2.66
1682	1838	1.270550	GCCATGACCAGGAACAAGTTG	59.729	52.381	0.00	0.00	0.00	3.16
1750	1907	1.240256	CCGGAAAAATCGGTTGGTGA	58.760	50.000	0.00	0.00	42.33	4.02
1775	1932	1.633945	GTTTAGAGGGATGGTGGTGGT	59.366	52.381	0.00	0.00	0.00	4.16
1818	1978	4.097361	GTGAAGGAGGGCGGGGTC	62.097	72.222	0.00	0.00	0.00	4.46
1848	2010	2.045340	GGTAGCACCATTGGGCGT	60.045	61.111	7.78	1.58	38.42	5.68
1861	2023	2.594592	GGCGTGAGTGGCAAAGGT	60.595	61.111	0.00	0.00	0.00	3.50
1886	2048	1.972660	GATAGGGCAGGGAAGTGCGT	61.973	60.000	0.00	0.00	45.00	5.24
1922	2084	4.460382	AGAAAATGAACAATGGCACGATCT	59.540	37.500	0.00	0.00	0.00	2.75
1943	2105	3.981071	TGACCGTTGGATTGAGATCTT	57.019	42.857	0.00	0.00	32.66	2.40
1947	2109	3.007940	ACCGTTGGATTGAGATCTTGTGA	59.992	43.478	0.00	0.00	32.66	3.58
2007	2169	7.956420	CAACTTACACATAGTTGGTCACTTA	57.044	36.000	7.64	0.00	45.46	2.24
2018	2180	9.787532	CATAGTTGGTCACTTAAATATTTGGTG	57.212	33.333	20.48	20.48	36.88	4.17
2020	2182	7.882179	AGTTGGTCACTTAAATATTTGGTGTC	58.118	34.615	23.11	19.84	27.32	3.67
2027	2189	3.569250	AAATATTTGGTGTCCACGTGC	57.431	42.857	10.91	0.00	30.78	5.34
2033	2195	1.668151	GGTGTCCACGTGCTTCCTC	60.668	63.158	10.91	0.00	0.00	3.71
2034	2196	1.367840	GTGTCCACGTGCTTCCTCT	59.632	57.895	10.91	0.00	0.00	3.69
2035	2197	0.667792	GTGTCCACGTGCTTCCTCTC	60.668	60.000	10.91	0.00	0.00	3.20
2036	2198	0.827925	TGTCCACGTGCTTCCTCTCT	60.828	55.000	10.91	0.00	0.00	3.10
2037	2199	1.174783	GTCCACGTGCTTCCTCTCTA	58.825	55.000	10.91	0.00	0.00	2.43
2038	2200	1.544691	GTCCACGTGCTTCCTCTCTAA	59.455	52.381	10.91	0.00	0.00	2.10
2039	2201	2.166664	GTCCACGTGCTTCCTCTCTAAT	59.833	50.000	10.91	0.00	0.00	1.73
2040	2202	3.380637	GTCCACGTGCTTCCTCTCTAATA	59.619	47.826	10.91	0.00	0.00	0.98
2041	2203	4.038162	GTCCACGTGCTTCCTCTCTAATAT	59.962	45.833	10.91	0.00	0.00	1.28
2042	2204	4.649674	TCCACGTGCTTCCTCTCTAATATT	59.350	41.667	10.91	0.00	0.00	1.28
2043	2205	4.747108	CCACGTGCTTCCTCTCTAATATTG	59.253	45.833	10.91	0.00	0.00	1.90
2044	2206	4.747108	CACGTGCTTCCTCTCTAATATTGG	59.253	45.833	0.82	0.00	0.00	3.16
2045	2207	4.406003	ACGTGCTTCCTCTCTAATATTGGT	59.594	41.667	0.00	0.00	0.00	3.67
2046	2208	5.104900	ACGTGCTTCCTCTCTAATATTGGTT	60.105	40.000	0.00	0.00	0.00	3.67
2047	2209	5.463724	CGTGCTTCCTCTCTAATATTGGTTC	59.536	44.000	0.00	0.00	0.00	3.62
2048	2210	6.349300	GTGCTTCCTCTCTAATATTGGTTCA	58.651	40.000	0.00	0.00	0.00	3.18
2055	2217	9.434275	TCCTCTCTAATATTGGTTCACTCATTA	57.566	33.333	0.00	0.00	0.00	1.90
2058	2220	9.434275	TCTCTAATATTGGTTCACTCATTAGGA	57.566	33.333	0.00	0.00	30.48	2.94
2089	2264	1.001624	CGAATGAGAATGAGCGTGCA	58.998	50.000	0.00	0.00	0.00	4.57
2090	2265	1.596260	CGAATGAGAATGAGCGTGCAT	59.404	47.619	0.00	0.00	0.00	3.96
2091	2266	2.348311	CGAATGAGAATGAGCGTGCATC	60.348	50.000	0.00	0.00	0.00	3.91
2094	2269	1.216122	GAGAATGAGCGTGCATCCTC	58.784	55.000	9.02	9.02	0.00	3.71
2095	2270	0.829333	AGAATGAGCGTGCATCCTCT	59.171	50.000	14.98	1.35	0.00	3.69
2118	2298	4.892345	TGAGAGAGAGAGAGAGAGAGAGAG	59.108	50.000	0.00	0.00	0.00	3.20
2119	2299	5.136068	AGAGAGAGAGAGAGAGAGAGAGA	57.864	47.826	0.00	0.00	0.00	3.10
2121	2301	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
2123	2303	4.877773	AGAGAGAGAGAGAGAGAGAGAGT	58.122	47.826	0.00	0.00	0.00	3.24
2156	2336	2.806856	GCTCATGACGCAGAAGCCG	61.807	63.158	10.95	0.00	37.52	5.52
2158	2338	1.144565	CTCATGACGCAGAAGCCGAG	61.145	60.000	0.00	0.00	37.52	4.63
2161	2341	1.032794	ATGACGCAGAAGCCGAGATA	58.967	50.000	0.00	0.00	37.52	1.98
2173	2353	7.577046	GCAGAAGCCGAGATATAAACACCTATA	60.577	40.741	0.00	0.00	33.58	1.31
2237	2420	5.699001	GGATTTATTTTGCAAAACCTTCGGT	59.301	36.000	26.05	11.48	37.65	4.69
2254	2437	2.723322	GGTCCTTACCATAACACCCC	57.277	55.000	0.00	0.00	45.98	4.95
2257	2440	1.832998	TCCTTACCATAACACCCCGAC	59.167	52.381	0.00	0.00	0.00	4.79
2273	2456	3.568430	CCCCGACAAAAAGAAAAGTAGCT	59.432	43.478	0.00	0.00	0.00	3.32
2274	2457	4.537015	CCCGACAAAAAGAAAAGTAGCTG	58.463	43.478	0.00	0.00	0.00	4.24
2276	2459	5.220970	CCCGACAAAAAGAAAAGTAGCTGAA	60.221	40.000	0.00	0.00	0.00	3.02
2277	2460	5.909610	CCGACAAAAAGAAAAGTAGCTGAAG	59.090	40.000	0.00	0.00	0.00	3.02
2278	2461	6.238374	CCGACAAAAAGAAAAGTAGCTGAAGA	60.238	38.462	0.00	0.00	0.00	2.87
2279	2462	6.848296	CGACAAAAAGAAAAGTAGCTGAAGAG	59.152	38.462	0.00	0.00	0.00	2.85
2280	2463	7.466050	CGACAAAAAGAAAAGTAGCTGAAGAGT	60.466	37.037	0.00	0.00	0.00	3.24
2281	2464	8.732746	ACAAAAAGAAAAGTAGCTGAAGAGTA	57.267	30.769	0.00	0.00	0.00	2.59
2282	2465	9.343539	ACAAAAAGAAAAGTAGCTGAAGAGTAT	57.656	29.630	0.00	0.00	0.00	2.12
2285	2468	9.561069	AAAAGAAAAGTAGCTGAAGAGTATTGA	57.439	29.630	0.00	0.00	0.00	2.57
2286	2469	9.561069	AAAGAAAAGTAGCTGAAGAGTATTGAA	57.439	29.630	0.00	0.00	0.00	2.69
2287	2470	9.732130	AAGAAAAGTAGCTGAAGAGTATTGAAT	57.268	29.630	0.00	0.00	0.00	2.57
2288	2471	9.732130	AGAAAAGTAGCTGAAGAGTATTGAATT	57.268	29.630	0.00	0.00	0.00	2.17
2289	2472	9.980780	GAAAAGTAGCTGAAGAGTATTGAATTC	57.019	33.333	0.00	0.00	0.00	2.17
2290	2473	9.732130	AAAAGTAGCTGAAGAGTATTGAATTCT	57.268	29.630	7.05	0.00	0.00	2.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	52	6.712095	TCTCTCTGCAAACAAATATGAAGTGT	59.288	34.615	0.00	0.00	0.00	3.55
50	55	7.375106	ACTCTCTCTGCAAACAAATATGAAG	57.625	36.000	0.00	0.00	0.00	3.02
53	58	7.601073	TGTACTCTCTCTGCAAACAAATATG	57.399	36.000	0.00	0.00	0.00	1.78
235	249	8.342634	ACAAAGACACTAAAACATGTCACATAC	58.657	33.333	0.00	0.00	46.34	2.39
372	386	2.537529	CGAAATGAACATGTAGCAGCGG	60.538	50.000	0.00	0.00	0.00	5.52
438	454	2.306512	TGATAAGTGGGCTTAAACGGGT	59.693	45.455	0.00	0.00	40.22	5.28
517	533	4.412796	GGCGTAAGTCCCCTTTAGTTAT	57.587	45.455	0.00	0.00	41.68	1.89
603	619	2.017559	ATTAGACTCGGCTGGTCGGC	62.018	60.000	8.07	0.00	38.58	5.54
609	625	3.254657	AGCTAGCTAATTAGACTCGGCTG	59.745	47.826	17.69	2.86	0.00	4.85
642	660	4.855298	ATTTAGTTAGCTGCCCCTACAA	57.145	40.909	0.00	0.00	0.00	2.41
693	719	7.255381	GCTTCAAACATGTTGGCTATCATATCT	60.255	37.037	12.82	0.00	0.00	1.98
737	767	3.276846	GGTGGCGTTGCAGTCGTT	61.277	61.111	13.24	0.00	0.00	3.85
780	840	7.437713	ACTGATTAGAGAGAGAGAGAGAGAA	57.562	40.000	0.00	0.00	0.00	2.87
795	882	5.395657	CCAGAGCATGTGGTTACTGATTAGA	60.396	44.000	0.00	0.00	46.08	2.10
797	884	4.769688	CCAGAGCATGTGGTTACTGATTA	58.230	43.478	0.00	0.00	46.08	1.75
800	887	2.768253	CCAGAGCATGTGGTTACTGA	57.232	50.000	0.00	0.00	46.08	3.41
914	1004	5.636837	AGCTAGAGATTAGATTTCGATCGC	58.363	41.667	11.09	0.00	0.00	4.58
995	1102	1.035923	GATCAGCTCCCTCATCGTCA	58.964	55.000	0.00	0.00	0.00	4.35
1026	1133	2.939261	GCTCACCCGGTCCGAGAAA	61.939	63.158	14.39	0.00	0.00	2.52
1105	1215	1.435515	GCTCGCATTCCTCGTCTCT	59.564	57.895	0.00	0.00	0.00	3.10
1107	1217	2.103143	CGCTCGCATTCCTCGTCT	59.897	61.111	0.00	0.00	0.00	4.18
1165	1275	2.267006	CATCTCCAGCAGCACCGT	59.733	61.111	0.00	0.00	0.00	4.83
1169	1279	4.478371	CCGCCATCTCCAGCAGCA	62.478	66.667	0.00	0.00	0.00	4.41
1191	1301	0.608640	CCTGCTTGTACCCGAACTCT	59.391	55.000	0.00	0.00	0.00	3.24
1297	1407	9.583765	AAGTCGATAACTGGAGAATTAACTAAC	57.416	33.333	0.00	0.00	38.58	2.34
1384	1523	5.254339	ACAAAAGGCAAAAGAGAAGACAG	57.746	39.130	0.00	0.00	0.00	3.51
1555	1703	3.449377	TCACTCCGCTTACATATGACCAA	59.551	43.478	10.38	0.00	0.00	3.67
1560	1708	8.184192	AGAAATTTTTCACTCCGCTTACATATG	58.816	33.333	0.00	0.00	39.61	1.78
1570	1718	7.382218	AGTTATGCAAAGAAATTTTTCACTCCG	59.618	33.333	5.88	0.00	39.61	4.63
1581	1729	7.253422	CCTTGAATCGAGTTATGCAAAGAAAT	58.747	34.615	0.00	0.00	0.00	2.17
1588	1736	1.933181	CGCCTTGAATCGAGTTATGCA	59.067	47.619	0.00	0.00	0.00	3.96
1666	1822	2.021723	GCCACAACTTGTTCCTGGTCA	61.022	52.381	0.00	0.00	0.00	4.02
1750	1907	0.620700	ACCATCCCTCTAAACCGGCT	60.621	55.000	0.00	0.00	0.00	5.52
1790	1950	3.717294	CCTTCACCTCCCCCACCG	61.717	72.222	0.00	0.00	0.00	4.94
1818	1978	2.277120	CTACCGTTCGACCTCGCG	60.277	66.667	0.00	0.00	39.60	5.87
1848	2010	1.003839	CGCCTACCTTTGCCACTCA	60.004	57.895	0.00	0.00	0.00	3.41
1861	2023	2.203788	CCCTGCCCTATCCGCCTA	60.204	66.667	0.00	0.00	0.00	3.93
1886	2048	0.608035	ATTTTCTTTCTCCCGCGCCA	60.608	50.000	0.00	0.00	0.00	5.69
1922	2084	3.981071	AGATCTCAATCCAACGGTCAA	57.019	42.857	0.00	0.00	31.78	3.18
1943	2105	3.644966	AAGTCACTTTTCTGGGTCACA	57.355	42.857	0.00	0.00	0.00	3.58
1947	2109	4.654262	TCTCTGTAAGTCACTTTTCTGGGT	59.346	41.667	0.00	0.00	33.76	4.51
2007	2169	3.153919	AGCACGTGGACACCAAATATTT	58.846	40.909	18.88	0.00	34.18	1.40
2018	2180	1.174783	TAGAGAGGAAGCACGTGGAC	58.825	55.000	18.88	0.66	0.00	4.02
2020	2182	2.969628	ATTAGAGAGGAAGCACGTGG	57.030	50.000	18.88	0.00	0.00	4.94
2027	2189	7.786030	TGAGTGAACCAATATTAGAGAGGAAG	58.214	38.462	0.00	0.00	0.00	3.46
2035	2197	9.784531	ACATCCTAATGAGTGAACCAATATTAG	57.215	33.333	0.00	0.00	36.67	1.73
2037	2199	9.479549	AAACATCCTAATGAGTGAACCAATATT	57.520	29.630	0.00	0.00	36.67	1.28
2038	2200	9.479549	AAAACATCCTAATGAGTGAACCAATAT	57.520	29.630	0.00	0.00	36.67	1.28
2039	2201	8.877864	AAAACATCCTAATGAGTGAACCAATA	57.122	30.769	0.00	0.00	36.67	1.90
2040	2202	7.781324	AAAACATCCTAATGAGTGAACCAAT	57.219	32.000	0.00	0.00	36.67	3.16
2041	2203	7.595819	AAAAACATCCTAATGAGTGAACCAA	57.404	32.000	0.00	0.00	36.67	3.67
2067	2242	2.159653	GCACGCTCATTCTCATTCGTTT	60.160	45.455	0.00	0.00	0.00	3.60
2094	2269	4.892345	TCTCTCTCTCTCTCTCTCTCTCAG	59.108	50.000	0.00	0.00	0.00	3.35
2095	2270	4.871822	TCTCTCTCTCTCTCTCTCTCTCA	58.128	47.826	0.00	0.00	0.00	3.27
2114	2294	2.758736	AACATGCCACACTCTCTCTC	57.241	50.000	0.00	0.00	0.00	3.20
2118	2298	2.160417	GCAGTAAACATGCCACACTCTC	59.840	50.000	0.00	0.00	37.73	3.20
2119	2299	2.154462	GCAGTAAACATGCCACACTCT	58.846	47.619	0.00	0.00	37.73	3.24
2121	2301	2.154462	GAGCAGTAAACATGCCACACT	58.846	47.619	0.00	0.00	44.97	3.55
2123	2303	2.268762	TGAGCAGTAAACATGCCACA	57.731	45.000	0.00	0.00	44.97	4.17
2237	2420	1.832998	GTCGGGGTGTTATGGTAAGGA	59.167	52.381	0.00	0.00	0.00	3.36
2253	2436	5.418310	TCAGCTACTTTTCTTTTTGTCGG	57.582	39.130	0.00	0.00	0.00	4.79
2254	2437	6.715464	TCTTCAGCTACTTTTCTTTTTGTCG	58.285	36.000	0.00	0.00	0.00	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.