AutoCloner

Multiple sequence alignment - TraesCS7B01G370300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G370300	chr7B	100.000	2420	0	0	1	2420	635300105	635302524	0.000000e+00	4470
1	TraesCS7B01G370300	chr7B	87.584	1482	110	33	7	1476	635064159	635065578	0.000000e+00	1650
2	TraesCS7B01G370300	chr7B	86.268	1238	95	38	753	1952	636433344	636432144	0.000000e+00	1275
3	TraesCS7B01G370300	chr7B	89.387	1027	86	11	969	1983	635749106	635748091	0.000000e+00	1271
4	TraesCS7B01G370300	chr7B	83.853	737	44	28	207	893	635169476	635170187	1.220000e-177	632
5	TraesCS7B01G370300	chr7B	87.805	410	37	6	1577	1984	635935525	635935127	3.640000e-128	468
6	TraesCS7B01G370300	chr7B	84.561	285	20	12	1535	1798	635065582	635065863	6.640000e-66	261
7	TraesCS7B01G370300	chr7B	92.254	142	7	3	1	139	635169340	635169480	5.280000e-47	198
8	TraesCS7B01G370300	chr7B	83.111	225	21	6	123	347	635100428	635100635	3.180000e-44	189
9	TraesCS7B01G370300	chr7D	86.845	1718	150	36	753	2420	574925522	574923831	0.000000e+00	1851
10	TraesCS7B01G370300	chr7D	89.821	1061	80	13	753	1809	575149722	575148686	0.000000e+00	1336
11	TraesCS7B01G370300	chr7D	86.328	1258	99	38	753	1998	575074492	575073296	0.000000e+00	1303
12	TraesCS7B01G370300	chr7D	85.874	1253	119	23	753	1984	574874727	574875942	0.000000e+00	1280
13	TraesCS7B01G370300	chr7D	86.809	887	79	20	753	1620	575218184	575217317	0.000000e+00	955
14	TraesCS7B01G370300	chr7D	91.698	265	12	2	1	265	574926778	574926524	2.290000e-95	359
15	TraesCS7B01G370300	chr7D	85.993	307	35	5	1681	1986	575217312	575217013	3.000000e-84	322
16	TraesCS7B01G370300	chr7D	86.147	231	17	10	1	222	575076358	575076134	4.020000e-58	235
17	TraesCS7B01G370300	chr7D	82.960	223	23	9	3	223	575151247	575151038	1.140000e-43	187
18	TraesCS7B01G370300	chr7D	94.898	98	5	0	1	98	574873290	574873387	1.160000e-33	154
19	TraesCS7B01G370300	chr7A	92.316	950	42	12	748	1693	664699184	664700106	0.000000e+00	1321
20	TraesCS7B01G370300	chr7A	87.283	1038	83	20	965	1986	664781109	664780105	0.000000e+00	1140
21	TraesCS7B01G370300	chr7A	84.238	1142	108	36	747	1846	664602982	664604093	0.000000e+00	1046
22	TraesCS7B01G370300	chr7A	89.788	754	60	13	1678	2420	664700136	664700883	0.000000e+00	950
23	TraesCS7B01G370300	chr7A	85.851	417	28	14	1	414	664698113	664698501	4.810000e-112	414
24	TraesCS7B01G370300	chr7A	91.760	267	15	2	1	267	664601749	664602008	4.920000e-97	364
25	TraesCS7B01G370300	chr7A	84.536	291	36	4	1681	1963	664872947	664872658	1.830000e-71	279
26	TraesCS7B01G370300	chr7A	86.286	175	17	4	123	297	664631470	664631637	1.480000e-42	183
27	TraesCS7B01G370300	chr7A	92.126	127	10	0	582	708	664698865	664698991	1.910000e-41	180

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G370300	chr7B	635300105	635302524	2419	False	4470.00	4470	100.00000	1	2420	1	chr7B.!!$F2	2419
1	TraesCS7B01G370300	chr7B	636432144	636433344	1200	True	1275.00	1275	86.26800	753	1952	1	chr7B.!!$R3	1199
2	TraesCS7B01G370300	chr7B	635748091	635749106	1015	True	1271.00	1271	89.38700	969	1983	1	chr7B.!!$R1	1014
3	TraesCS7B01G370300	chr7B	635064159	635065863	1704	False	955.50	1650	86.07250	7	1798	2	chr7B.!!$F3	1791
4	TraesCS7B01G370300	chr7B	635169340	635170187	847	False	415.00	632	88.05350	1	893	2	chr7B.!!$F4	892
5	TraesCS7B01G370300	chr7D	574923831	574926778	2947	True	1105.00	1851	89.27150	1	2420	2	chr7D.!!$R1	2419
6	TraesCS7B01G370300	chr7D	575073296	575076358	3062	True	769.00	1303	86.23750	1	1998	2	chr7D.!!$R2	1997
7	TraesCS7B01G370300	chr7D	575148686	575151247	2561	True	761.50	1336	86.39050	3	1809	2	chr7D.!!$R3	1806
8	TraesCS7B01G370300	chr7D	574873290	574875942	2652	False	717.00	1280	90.38600	1	1984	2	chr7D.!!$F1	1983
9	TraesCS7B01G370300	chr7D	575217013	575218184	1171	True	638.50	955	86.40100	753	1986	2	chr7D.!!$R4	1233
10	TraesCS7B01G370300	chr7A	664780105	664781109	1004	True	1140.00	1140	87.28300	965	1986	1	chr7A.!!$R1	1021
11	TraesCS7B01G370300	chr7A	664698113	664700883	2770	False	716.25	1321	90.02025	1	2420	4	chr7A.!!$F3	2419
12	TraesCS7B01G370300	chr7A	664601749	664604093	2344	False	705.00	1046	87.99900	1	1846	2	chr7A.!!$F2	1845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
487	2167	0.400594	GGCAAGTTCAGTAGTGGGGT	59.599	55.0	0.0	0.0	0.0	4.95	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2167	5200	0.467844	TGCATTTGGCCGGAGCATAT	60.468	50.0	5.05	0.0	43.89	1.78	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
225	235	3.117963	CCAGCCCATTCAATTCTCTCTCT	60.118	47.826	0.00	0.00	0.00	3.10
226	236	3.878103	CAGCCCATTCAATTCTCTCTCTG	59.122	47.826	0.00	0.00	0.00	3.35
227	237	3.117963	AGCCCATTCAATTCTCTCTCTGG	60.118	47.826	0.00	0.00	0.00	3.86
228	238	3.371380	GCCCATTCAATTCTCTCTCTGGT	60.371	47.826	0.00	0.00	0.00	4.00
229	239	4.853007	CCCATTCAATTCTCTCTCTGGTT	58.147	43.478	0.00	0.00	0.00	3.67
230	240	4.639310	CCCATTCAATTCTCTCTCTGGTTG	59.361	45.833	0.00	0.00	0.00	3.77
231	241	4.639310	CCATTCAATTCTCTCTCTGGTTGG	59.361	45.833	0.00	0.00	0.00	3.77
298	392	2.804986	ATGCACACACACATATGGGA	57.195	45.000	13.12	0.00	31.57	4.37
299	393	2.804986	TGCACACACACATATGGGAT	57.195	45.000	13.12	0.00	31.57	3.85
300	394	3.922171	TGCACACACACATATGGGATA	57.078	42.857	13.12	0.00	31.57	2.59
301	395	4.436113	TGCACACACACATATGGGATAT	57.564	40.909	13.12	0.00	31.57	1.63
302	396	4.136051	TGCACACACACATATGGGATATG	58.864	43.478	13.12	8.96	46.26	1.78
304	398	3.503363	CACACACACATATGGGATATGGC	59.497	47.826	13.12	0.00	45.36	4.40
305	399	3.395607	ACACACACATATGGGATATGGCT	59.604	43.478	13.12	0.00	45.36	4.75
306	400	4.597075	ACACACACATATGGGATATGGCTA	59.403	41.667	13.12	0.00	45.36	3.93
307	401	5.251468	ACACACACATATGGGATATGGCTAT	59.749	40.000	13.12	0.00	45.36	2.97
308	402	6.443527	ACACACACATATGGGATATGGCTATA	59.556	38.462	13.12	0.00	45.36	1.31
309	403	7.127801	ACACACACATATGGGATATGGCTATAT	59.872	37.037	13.12	1.63	45.36	0.86
468	1905	7.167468	GCACAACTTTGTTGTTCCTACTAAATG	59.833	37.037	12.64	0.56	39.91	2.32
476	2151	6.016610	TGTTGTTCCTACTAAATGGCAAGTTC	60.017	38.462	0.00	0.00	0.00	3.01
484	2164	5.003804	ACTAAATGGCAAGTTCAGTAGTGG	58.996	41.667	0.00	0.00	0.00	4.00
487	2167	0.400594	GGCAAGTTCAGTAGTGGGGT	59.599	55.000	0.00	0.00	0.00	4.95
490	2170	1.420138	CAAGTTCAGTAGTGGGGTGGT	59.580	52.381	0.00	0.00	0.00	4.16
564	2639	7.502561	ACTGCTACTGTTTGAAAATACTCCTTT	59.497	33.333	0.00	0.00	0.00	3.11
566	2641	9.515226	TGCTACTGTTTGAAAATACTCCTTTAT	57.485	29.630	0.00	0.00	0.00	1.40
648	2723	2.161855	TCATGGCGCATTTTCTTGTCT	58.838	42.857	10.83	0.00	0.00	3.41
673	2855	7.193377	ACTTTAACCAATGTAACCAGTTACG	57.807	36.000	14.25	4.55	46.19	3.18
674	2856	6.767423	ACTTTAACCAATGTAACCAGTTACGT	59.233	34.615	14.25	11.80	46.19	3.57
692	2874	3.748107	CGTATTCGTATTCGCCAAGTC	57.252	47.619	0.00	0.00	36.96	3.01
699	2881	2.000447	GTATTCGCCAAGTCTGTGTCC	59.000	52.381	0.00	0.00	0.00	4.02
899	3699	3.244422	ACAAACGCCTTGTATCCTCTCAA	60.244	43.478	1.82	0.00	46.75	3.02
904	3711	3.118956	CGCCTTGTATCCTCTCAACTCTT	60.119	47.826	0.00	0.00	0.00	2.85
926	3733	1.906824	TCGTCCCTCGCCAAGAACT	60.907	57.895	0.00	0.00	39.67	3.01
1426	4271	2.095466	GCGCTCTACTACTAGCCATCTG	60.095	54.545	0.00	0.00	35.22	2.90
1483	4333	4.776322	TGGCGGGCGTGATGGAAG	62.776	66.667	0.00	0.00	0.00	3.46
1487	4337	0.531974	GCGGGCGTGATGGAAGATTA	60.532	55.000	0.00	0.00	0.00	1.75
1659	4537	2.185004	TTTAGGACCTGCTGTCTTGC	57.815	50.000	3.53	0.00	43.89	4.01
1667	4625	0.883833	CTGCTGTCTTGCGGGAATTT	59.116	50.000	0.00	0.00	35.80	1.82
1711	4700	6.242396	TCTTCTGAGTGTTCTTCTAGCTAGT	58.758	40.000	20.10	0.00	0.00	2.57
1771	4765	6.031751	TCTTCCTCTTCTTTTGCTAGAGAC	57.968	41.667	0.00	0.00	38.09	3.36
1772	4766	5.540337	TCTTCCTCTTCTTTTGCTAGAGACA	59.460	40.000	0.00	0.00	38.09	3.41
1774	4768	5.971763	TCCTCTTCTTTTGCTAGAGACATC	58.028	41.667	0.00	0.00	38.09	3.06
1830	4831	3.885724	TCGCCTCATGTGAGTGAAATA	57.114	42.857	9.03	0.00	40.48	1.40
1832	4833	2.868583	CGCCTCATGTGAGTGAAATAGG	59.131	50.000	9.03	0.00	40.48	2.57
1882	4888	4.323792	CCAAGATCTGGTGGTGTAGAATGT	60.324	45.833	5.40	0.00	40.78	2.71
1927	4938	3.306780	GCTACCTCTAACAGTTCAGGCAA	60.307	47.826	10.15	0.83	0.00	4.52
1952	4963	5.243060	CCTGTCATGGAATGCAATGATGTAT	59.757	40.000	0.00	0.00	46.21	2.29
2026	5049	1.597742	TCAGAACTGCTTGCCAGAAC	58.402	50.000	0.00	0.00	44.64	3.01
2080	5103	3.736720	CTGACTGCATACACAGCCATAT	58.263	45.455	0.00	0.00	41.60	1.78
2084	5107	4.887748	ACTGCATACACAGCCATATAGTC	58.112	43.478	0.00	0.00	41.60	2.59
2096	5120	4.655649	AGCCATATAGTCTGTGTCCATCAA	59.344	41.667	0.00	0.00	0.00	2.57
2126	5150	6.382570	TGGATTTTCCAGGACTTTGAAGAAAA	59.617	34.615	0.00	0.00	42.67	2.29
2187	5220	0.682532	TATGCTCCGGCCAAATGCAA	60.683	50.000	2.24	0.00	43.89	4.08
2188	5221	2.125952	GCTCCGGCCAAATGCAAC	60.126	61.111	2.24	0.00	43.89	4.17
2213	5249	3.632333	AGGGACGAGATGACAATGTAGA	58.368	45.455	0.00	0.00	0.00	2.59
2247	5283	3.686726	AGAAATCGGACAGAACAATGCTC	59.313	43.478	0.00	0.00	0.00	4.26
2269	5305	9.386010	TGCTCTTTCTTTTTGTTACTGTTACTA	57.614	29.630	0.00	0.00	0.00	1.82
2299	5340	3.181517	CCTTGCATCACACATACGACTTG	60.182	47.826	0.00	0.00	0.00	3.16
2320	5361	4.717877	TGTGAGAACCAGTCATCACATTT	58.282	39.130	11.78	0.00	45.18	2.32
2329	5370	5.977129	ACCAGTCATCACATTTTTCGAAAAC	59.023	36.000	22.41	8.93	0.00	2.43
2379	5422	5.752036	ACATTCCAGAGAGTCAATCAAGA	57.248	39.130	0.00	0.00	0.00	3.02
2397	5440	2.073056	AGATTTCGTTATGTGCACGCA	58.927	42.857	13.13	0.00	37.57	5.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	0.179127	GTAGTCCCTTTCGTACGGCC	60.179	60.000	16.52	0.00	0.00	6.13
176	186	2.939261	AAGTGCGGGTACAGTCGGG	61.939	63.158	0.00	0.00	0.00	5.14
179	189	1.670967	GGTACAAGTGCGGGTACAGTC	60.671	57.143	0.00	0.00	41.21	3.51
225	235	1.781786	TTTAAGGCAAGCACCAACCA	58.218	45.000	0.00	0.00	0.00	3.67
226	236	2.364002	TCTTTTAAGGCAAGCACCAACC	59.636	45.455	0.00	0.00	0.00	3.77
227	237	3.726291	TCTTTTAAGGCAAGCACCAAC	57.274	42.857	0.00	0.00	0.00	3.77
228	238	4.744795	TTTCTTTTAAGGCAAGCACCAA	57.255	36.364	0.00	0.00	0.00	3.67
229	239	4.744795	TTTTCTTTTAAGGCAAGCACCA	57.255	36.364	0.00	0.00	0.00	4.17
298	392	6.843333	AGAGCATGGTGAGTATATAGCCATAT	59.157	38.462	0.00	0.00	37.80	1.78
299	393	6.197903	AGAGCATGGTGAGTATATAGCCATA	58.802	40.000	0.00	0.00	37.80	2.74
300	394	5.028802	AGAGCATGGTGAGTATATAGCCAT	58.971	41.667	0.00	0.00	40.22	4.40
301	395	4.420206	AGAGCATGGTGAGTATATAGCCA	58.580	43.478	0.00	0.00	0.00	4.75
302	396	5.413309	AAGAGCATGGTGAGTATATAGCC	57.587	43.478	0.00	0.00	0.00	3.93
304	398	8.402472	GCTAGTAAGAGCATGGTGAGTATATAG	58.598	40.741	0.00	0.00	42.36	1.31
305	399	8.110271	AGCTAGTAAGAGCATGGTGAGTATATA	58.890	37.037	0.00	0.00	45.43	0.86
306	400	6.951198	AGCTAGTAAGAGCATGGTGAGTATAT	59.049	38.462	0.00	0.00	45.43	0.86
307	401	6.307776	AGCTAGTAAGAGCATGGTGAGTATA	58.692	40.000	0.00	0.00	45.43	1.47
308	402	5.144100	AGCTAGTAAGAGCATGGTGAGTAT	58.856	41.667	0.00	0.00	45.43	2.12
309	403	4.537751	AGCTAGTAAGAGCATGGTGAGTA	58.462	43.478	0.00	0.00	45.43	2.59
373	1093	7.699391	CACATAAAAATGTCTTAGCCTCATGTG	59.301	37.037	0.00	0.00	34.40	3.21
468	1905	0.400594	ACCCCACTACTGAACTTGCC	59.599	55.000	0.00	0.00	0.00	4.52
476	2151	1.895238	CGGTACCACCCCACTACTG	59.105	63.158	13.54	0.00	33.75	2.74
484	2164	2.125552	GTTACCGCGGTACCACCC	60.126	66.667	36.56	17.96	33.75	4.61
487	2167	0.610509	TACCAGTTACCGCGGTACCA	60.611	55.000	36.56	21.43	34.12	3.25
490	2170	2.166829	TCTTTACCAGTTACCGCGGTA	58.833	47.619	33.45	33.45	34.12	4.02
495	2176	3.937079	GGTGGATTCTTTACCAGTTACCG	59.063	47.826	0.00	0.00	36.82	4.02
519	2200	9.922305	GTAGCAGTATTCTATGTTTCATGTTTC	57.078	33.333	0.00	0.00	0.00	2.78
566	2641	9.305555	GGTTGTATTATACTCCCTCTGTACATA	57.694	37.037	0.00	0.00	0.00	2.29
648	2723	7.930865	ACGTAACTGGTTACATTGGTTAAAGTA	59.069	33.333	19.35	0.00	44.12	2.24
673	2855	4.026804	CACAGACTTGGCGAATACGAATAC	60.027	45.833	0.00	0.00	42.66	1.89
674	2856	4.109766	CACAGACTTGGCGAATACGAATA	58.890	43.478	0.00	0.00	42.66	1.75
699	2881	6.713762	TTCTGCCCCATTTCATACTAAATG	57.286	37.500	0.00	0.00	43.45	2.32
719	3192	7.256190	GGGTTACTTGCCTCCTTTTAAAATTCT	60.256	37.037	0.09	0.00	0.00	2.40
783	3562	6.207810	TGCCATTATTTTTCTCGGTTTGTAGT	59.792	34.615	0.00	0.00	0.00	2.73
784	3563	6.616947	TGCCATTATTTTTCTCGGTTTGTAG	58.383	36.000	0.00	0.00	0.00	2.74
899	3699	1.957562	CGAGGGACGACACAAGAGT	59.042	57.895	0.00	0.00	45.77	3.24
975	3796	2.975799	TTGCTTCGGTTGACGCCC	60.976	61.111	0.00	0.00	43.86	6.13
1431	4276	1.605971	GAGGGTGAGACGGGGAAGAC	61.606	65.000	0.00	0.00	0.00	3.01
1435	4280	3.273654	AGGAGGGTGAGACGGGGA	61.274	66.667	0.00	0.00	0.00	4.81
1572	4438	2.045326	TCCACCAACCTCCCTATGTACT	59.955	50.000	0.00	0.00	0.00	2.73
1617	4494	2.420642	TGCTGAGCTGCAGTAGAAAAG	58.579	47.619	16.64	6.15	46.62	2.27
1659	4537	3.885724	AAATTACAGCCCAAATTCCCG	57.114	42.857	0.00	0.00	0.00	5.14
1667	4625	6.777580	AGAAGAAGAAGAAAAATTACAGCCCA	59.222	34.615	0.00	0.00	0.00	5.36
1711	4700	5.533154	GCAGCTACCAGAACTAGATCTAGAA	59.467	44.000	31.91	10.05	36.97	2.10
1771	4765	3.801114	TGTGGTATCAAGACCTCGATG	57.199	47.619	0.00	0.00	40.46	3.84
1772	4766	3.960755	TGATGTGGTATCAAGACCTCGAT	59.039	43.478	0.00	0.00	40.46	3.59
1774	4768	3.801114	TGATGTGGTATCAAGACCTCG	57.199	47.619	0.00	0.00	40.46	4.63
1787	4782	1.064505	CTTGCGGCTTACATGATGTGG	59.935	52.381	8.61	2.28	0.00	4.17
1882	4888	3.459227	TGGAGATCCATGGAAGTGCATTA	59.541	43.478	20.67	0.00	42.01	1.90
1909	4920	2.039084	AGGTTGCCTGAACTGTTAGAGG	59.961	50.000	11.90	11.90	34.66	3.69
1927	4938	3.090210	TCATTGCATTCCATGACAGGT	57.910	42.857	0.00	0.00	0.00	4.00
2026	5049	2.958355	ACCTGAACACAAAACCCAGATG	59.042	45.455	0.00	0.00	0.00	2.90
2039	5062	5.016831	TCAGCTATCTACTGAACCTGAACA	58.983	41.667	0.00	0.00	41.10	3.18
2080	5103	4.141642	CCATGGATTGATGGACACAGACTA	60.142	45.833	5.56	0.00	45.24	2.59
2084	5107	3.286329	TCCATGGATTGATGGACACAG	57.714	47.619	11.44	0.00	45.85	3.66
2126	5150	6.622896	GCAGTTATCGGTTCAAGCAATAAACT	60.623	38.462	0.00	0.00	0.00	2.66
2130	5154	3.625764	GGCAGTTATCGGTTCAAGCAATA	59.374	43.478	0.00	0.00	0.00	1.90
2136	5160	1.546923	TCGAGGCAGTTATCGGTTCAA	59.453	47.619	0.00	0.00	39.38	2.69
2167	5200	0.467844	TGCATTTGGCCGGAGCATAT	60.468	50.000	5.05	0.00	43.89	1.78
2172	5205	1.861542	TTCGTTGCATTTGGCCGGAG	61.862	55.000	5.05	0.00	43.89	4.63
2173	5206	1.456196	TTTCGTTGCATTTGGCCGGA	61.456	50.000	5.05	0.00	43.89	5.14
2187	5220	1.254026	TGTCATCTCGTCCCTTTCGT	58.746	50.000	0.00	0.00	0.00	3.85
2188	5221	2.363788	TTGTCATCTCGTCCCTTTCG	57.636	50.000	0.00	0.00	0.00	3.46
2213	5249	2.239654	TCCGATTTCTCCAATTCCTGCT	59.760	45.455	0.00	0.00	0.00	4.24
2269	5305	2.158769	TGTGTGATGCAAGGAGAACTGT	60.159	45.455	0.00	0.00	0.00	3.55
2299	5340	5.695851	AAAATGTGATGACTGGTTCTCAC	57.304	39.130	8.61	8.61	38.74	3.51
2320	5361	3.733224	CGTGATGCCATTTGTTTTCGAAA	59.267	39.130	6.47	6.47	0.00	3.46
2329	5370	4.164822	ACTTTTCTCGTGATGCCATTTG	57.835	40.909	0.00	0.00	0.00	2.32
2379	5422	2.482336	TCTTGCGTGCACATAACGAAAT	59.518	40.909	18.64	0.00	43.68	2.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.