Multiple sequence alignment - TraesCS7B01G370100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G370100 chr7B 100.000 2420 0 0 1 2420 635064115 635066534 0.000000e+00 4470.0
1 TraesCS7B01G370100 chr7B 93.188 1380 48 16 889 2252 635170596 635171945 0.000000e+00 1986.0
2 TraesCS7B01G370100 chr7B 87.601 1484 106 35 45 1464 635300111 635301580 0.000000e+00 1650.0
3 TraesCS7B01G370100 chr7B 89.818 658 44 9 822 1464 636433281 636432632 0.000000e+00 822.0
4 TraesCS7B01G370100 chr7B 94.817 328 12 3 244 571 635169476 635169798 7.720000e-140 507.0
5 TraesCS7B01G370100 chr7B 95.926 270 9 2 550 819 635169805 635170072 1.030000e-118 436.0
6 TraesCS7B01G370100 chr7B 97.059 170 5 0 2251 2420 653924869 653925038 1.090000e-73 287.0
7 TraesCS7B01G370100 chr7B 96.429 168 6 0 2253 2420 347032218 347032385 6.590000e-71 278.0
8 TraesCS7B01G370100 chr7B 96.429 168 6 0 2253 2420 478808893 478808726 6.590000e-71 278.0
9 TraesCS7B01G370100 chr7B 84.561 285 20 12 1468 1749 635301639 635301902 6.640000e-66 261.0
10 TraesCS7B01G370100 chr7B 88.462 208 15 4 167 372 635100435 635100635 2.400000e-60 243.0
11 TraesCS7B01G370100 chr7B 83.333 294 15 9 1468 1752 635748541 635748273 8.650000e-60 241.0
12 TraesCS7B01G370100 chr7B 84.211 247 10 10 1510 1752 635935531 635935310 1.880000e-51 213.0
13 TraesCS7B01G370100 chr7B 89.933 149 10 1 1744 1892 636432288 636432145 1.140000e-43 187.0
14 TraesCS7B01G370100 chr7B 82.326 215 35 3 606 818 636433535 636433322 1.480000e-42 183.0
15 TraesCS7B01G370100 chr7B 83.871 186 21 8 1894 2075 636432113 636431933 4.140000e-38 169.0
16 TraesCS7B01G370100 chr7B 78.014 282 19 11 1477 1749 636432559 636432312 1.170000e-28 137.0
17 TraesCS7B01G370100 chr7B 93.023 86 4 2 812 897 635170104 635170187 9.080000e-25 124.0
18 TraesCS7B01G370100 chr7D 89.970 658 48 7 822 1464 575149659 575149005 0.000000e+00 833.0
19 TraesCS7B01G370100 chr7D 89.406 623 38 15 822 1425 574874790 574875403 0.000000e+00 760.0
20 TraesCS7B01G370100 chr7D 87.846 650 64 5 822 1462 575218119 575217476 0.000000e+00 749.0
21 TraesCS7B01G370100 chr7D 89.198 611 48 9 822 1420 574925459 574924855 0.000000e+00 747.0
22 TraesCS7B01G370100 chr7D 94.444 252 11 2 45 296 574926772 574926524 3.770000e-103 385.0
23 TraesCS7B01G370100 chr7D 85.666 293 20 10 1468 1749 574924737 574924456 3.040000e-74 289.0
24 TraesCS7B01G370100 chr7D 76.814 634 58 38 1468 2071 575073756 575073182 8.520000e-70 274.0
25 TraesCS7B01G370100 chr7D 85.774 239 18 10 45 274 575076352 575076121 3.110000e-59 239.0
26 TraesCS7B01G370100 chr7D 81.661 289 17 9 1468 1749 574875497 574875756 8.770000e-50 207.0
27 TraesCS7B01G370100 chr7D 80.178 338 15 17 1468 1790 575148946 575148646 3.150000e-49 206.0
28 TraesCS7B01G370100 chr7D 81.008 258 30 11 45 298 575219954 575219712 1.140000e-43 187.0
29 TraesCS7B01G370100 chr7D 83.028 218 23 8 45 260 575151243 575151038 4.110000e-43 185.0
30 TraesCS7B01G370100 chr7D 78.896 308 24 14 1625 1912 575217314 575217028 1.150000e-38 171.0
31 TraesCS7B01G370100 chr7D 96.739 92 3 0 45 136 574873296 574873387 1.160000e-33 154.0
32 TraesCS7B01G370100 chr7A 89.825 629 44 12 810 1425 664699239 664699860 0.000000e+00 789.0
33 TraesCS7B01G370100 chr7A 84.348 805 68 28 683 1462 664873886 664873115 0.000000e+00 736.0
34 TraesCS7B01G370100 chr7A 87.437 597 51 8 880 1464 664781182 664780598 0.000000e+00 665.0
35 TraesCS7B01G370100 chr7A 89.526 401 18 19 45 439 664698119 664698501 1.010000e-133 486.0
36 TraesCS7B01G370100 chr7A 95.294 255 10 2 45 298 664601755 664602008 1.040000e-108 403.0
37 TraesCS7B01G370100 chr7A 88.930 271 19 4 1770 2039 664614063 664614323 8.350000e-85 324.0
38 TraesCS7B01G370100 chr7A 85.714 294 24 7 1468 1749 664603758 664604045 6.540000e-76 294.0
39 TraesCS7B01G370100 chr7A 92.655 177 12 1 170 346 664631480 664631655 1.110000e-63 254.0
40 TraesCS7B01G370100 chr7A 77.490 502 47 28 1468 1955 664780532 664780083 8.650000e-60 241.0
41 TraesCS7B01G370100 chr7A 81.481 243 24 6 483 725 664698770 664698991 1.910000e-41 180.0
42 TraesCS7B01G370100 chr7A 77.477 333 34 10 1618 1926 664700130 664700445 6.920000e-36 161.0
43 TraesCS7B01G370100 chr7A 89.899 99 8 2 722 818 664699113 664699211 2.530000e-25 126.0
44 TraesCS7B01G370100 chr7A 100.000 31 0 0 1744 1774 664604063 664604093 9.350000e-05 58.4
45 TraesCS7B01G370100 chr4B 97.024 168 5 0 2253 2420 407769844 407769677 1.420000e-72 283.0
46 TraesCS7B01G370100 chr4B 97.024 168 5 0 2253 2420 579701242 579701409 1.420000e-72 283.0
47 TraesCS7B01G370100 chr3B 96.491 171 6 0 2250 2420 637257367 637257537 1.420000e-72 283.0
48 TraesCS7B01G370100 chr5B 96.429 168 6 0 2253 2420 106740452 106740285 6.590000e-71 278.0
49 TraesCS7B01G370100 chr5B 96.429 168 6 0 2253 2420 295341319 295341152 6.590000e-71 278.0
50 TraesCS7B01G370100 chr2B 96.429 168 6 0 2253 2420 52807949 52807782 6.590000e-71 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G370100 chr7B 635064115 635066534 2419 False 4470.000000 4470 100.000000 1 2420 1 chr7B.!!$F2 2419
1 TraesCS7B01G370100 chr7B 635300111 635301902 1791 False 955.500000 1650 86.081000 45 1749 2 chr7B.!!$F6 1704
2 TraesCS7B01G370100 chr7B 635169476 635171945 2469 False 763.250000 1986 94.238500 244 2252 4 chr7B.!!$F5 2008
3 TraesCS7B01G370100 chr7B 636431933 636433535 1602 True 299.600000 822 84.792400 606 2075 5 chr7B.!!$R4 1469
4 TraesCS7B01G370100 chr7D 574924456 574926772 2316 True 473.666667 747 89.769333 45 1749 3 chr7D.!!$R1 1704
5 TraesCS7B01G370100 chr7D 575148646 575151243 2597 True 408.000000 833 84.392000 45 1790 3 chr7D.!!$R3 1745
6 TraesCS7B01G370100 chr7D 574873296 574875756 2460 False 373.666667 760 89.268667 45 1749 3 chr7D.!!$F1 1704
7 TraesCS7B01G370100 chr7D 575217028 575219954 2926 True 369.000000 749 82.583333 45 1912 3 chr7D.!!$R4 1867
8 TraesCS7B01G370100 chr7D 575073182 575076352 3170 True 256.500000 274 81.294000 45 2071 2 chr7D.!!$R2 2026
9 TraesCS7B01G370100 chr7A 664873115 664873886 771 True 736.000000 736 84.348000 683 1462 1 chr7A.!!$R1 779
10 TraesCS7B01G370100 chr7A 664780083 664781182 1099 True 453.000000 665 82.463500 880 1955 2 chr7A.!!$R2 1075
11 TraesCS7B01G370100 chr7A 664698119 664700445 2326 False 348.400000 789 85.641600 45 1926 5 chr7A.!!$F4 1881
12 TraesCS7B01G370100 chr7A 664601755 664604093 2338 False 251.800000 403 93.669333 45 1774 3 chr7A.!!$F3 1729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.116342 TCAGTAGGTGGGCTCCAAGA 59.884 55.0 0.0 0.0 34.18 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 5295 0.035056 CAGCCCTACTTCCCACAAGG 60.035 60.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.966247 TGCCAGGTCAGGTCAGTA 57.034 55.556 0.00 0.00 0.00 2.74
18 19 2.671145 TGCCAGGTCAGGTCAGTAG 58.329 57.895 0.00 0.00 0.00 2.57
19 20 0.904865 TGCCAGGTCAGGTCAGTAGG 60.905 60.000 0.00 0.00 0.00 3.18
20 21 0.905337 GCCAGGTCAGGTCAGTAGGT 60.905 60.000 0.00 0.00 0.00 3.08
21 22 0.898320 CCAGGTCAGGTCAGTAGGTG 59.102 60.000 0.00 0.00 0.00 4.00
22 23 0.898320 CAGGTCAGGTCAGTAGGTGG 59.102 60.000 0.00 0.00 0.00 4.61
23 24 0.252284 AGGTCAGGTCAGTAGGTGGG 60.252 60.000 0.00 0.00 0.00 4.61
24 25 1.597461 GTCAGGTCAGTAGGTGGGC 59.403 63.158 0.00 0.00 0.00 5.36
25 26 0.905337 GTCAGGTCAGTAGGTGGGCT 60.905 60.000 0.00 0.00 0.00 5.19
26 27 0.614979 TCAGGTCAGTAGGTGGGCTC 60.615 60.000 0.00 0.00 0.00 4.70
27 28 1.306226 AGGTCAGTAGGTGGGCTCC 60.306 63.158 0.00 0.00 0.00 4.70
28 29 1.612442 GGTCAGTAGGTGGGCTCCA 60.612 63.158 2.64 0.00 0.00 3.86
29 30 1.198759 GGTCAGTAGGTGGGCTCCAA 61.199 60.000 0.00 0.00 34.18 3.53
30 31 0.250513 GTCAGTAGGTGGGCTCCAAG 59.749 60.000 0.00 0.00 34.18 3.61
31 32 0.116342 TCAGTAGGTGGGCTCCAAGA 59.884 55.000 0.00 0.00 34.18 3.02
32 33 1.207791 CAGTAGGTGGGCTCCAAGAT 58.792 55.000 0.00 0.00 34.18 2.40
33 34 1.134280 CAGTAGGTGGGCTCCAAGATG 60.134 57.143 0.00 0.00 34.18 2.90
34 35 1.204146 GTAGGTGGGCTCCAAGATGA 58.796 55.000 0.00 0.00 34.18 2.92
35 36 1.134371 GTAGGTGGGCTCCAAGATGAC 60.134 57.143 0.00 0.00 34.18 3.06
36 37 0.842030 AGGTGGGCTCCAAGATGACA 60.842 55.000 0.00 0.00 34.18 3.58
37 38 0.393537 GGTGGGCTCCAAGATGACAG 60.394 60.000 0.00 0.00 34.18 3.51
38 39 1.028868 GTGGGCTCCAAGATGACAGC 61.029 60.000 0.00 0.00 34.18 4.40
39 40 1.817099 GGGCTCCAAGATGACAGCG 60.817 63.158 0.00 0.00 32.26 5.18
40 41 1.219124 GGCTCCAAGATGACAGCGA 59.781 57.895 0.00 0.00 32.26 4.93
41 42 0.391661 GGCTCCAAGATGACAGCGAA 60.392 55.000 0.00 0.00 32.26 4.70
42 43 1.442769 GCTCCAAGATGACAGCGAAA 58.557 50.000 0.00 0.00 0.00 3.46
43 44 2.012673 GCTCCAAGATGACAGCGAAAT 58.987 47.619 0.00 0.00 0.00 2.17
164 175 2.033602 GGGTGCTGGTTAAGGCGT 59.966 61.111 0.00 0.00 0.00 5.68
165 176 2.332654 GGGTGCTGGTTAAGGCGTG 61.333 63.158 0.00 0.00 0.00 5.34
336 692 3.260632 ACACACACATATGGCTACACTCA 59.739 43.478 7.80 0.00 0.00 3.41
337 693 3.618594 CACACACATATGGCTACACTCAC 59.381 47.826 7.80 0.00 0.00 3.51
338 694 3.198068 CACACATATGGCTACACTCACC 58.802 50.000 7.80 0.00 0.00 4.02
339 695 2.837591 ACACATATGGCTACACTCACCA 59.162 45.455 7.80 0.00 37.99 4.17
340 696 3.455910 ACACATATGGCTACACTCACCAT 59.544 43.478 7.80 0.00 45.94 3.55
341 697 3.811497 CACATATGGCTACACTCACCATG 59.189 47.826 7.80 0.00 43.93 3.66
342 698 3.181451 ACATATGGCTACACTCACCATGG 60.181 47.826 11.19 11.19 43.93 3.66
343 699 1.289160 ATGGCTACACTCACCATGGT 58.711 50.000 13.00 13.00 42.59 3.55
344 700 0.613260 TGGCTACACTCACCATGGTC 59.387 55.000 16.53 0.16 0.00 4.02
345 701 0.905357 GGCTACACTCACCATGGTCT 59.095 55.000 16.53 0.00 0.00 3.85
346 702 2.108168 GGCTACACTCACCATGGTCTA 58.892 52.381 16.53 5.24 0.00 2.59
347 703 2.500098 GGCTACACTCACCATGGTCTAA 59.500 50.000 16.53 2.40 0.00 2.10
524 2479 0.325933 GGGGTGGTACTGTGGTAACC 59.674 60.000 0.00 0.00 34.91 2.85
820 3891 1.312815 CATCCCGAGCAAAGAATCCC 58.687 55.000 0.00 0.00 0.00 3.85
834 3908 0.757188 AATCCCGTGCAACCCACAAA 60.757 50.000 0.00 0.00 44.91 2.83
1106 4661 2.427245 CCGCGAAGGACTCCTCCAT 61.427 63.158 8.23 0.00 45.00 3.41
1110 4665 1.617018 CGAAGGACTCCTCCATGGCA 61.617 60.000 6.96 0.00 39.39 4.92
1112 4667 0.548682 AAGGACTCCTCCATGGCAGT 60.549 55.000 6.96 8.73 39.39 4.40
1275 4860 2.927856 TTCAAGGCCCTGCTCCGA 60.928 61.111 0.00 0.00 0.00 4.55
1508 5195 1.602237 CCCCTGCGTGGAGTACATT 59.398 57.895 0.00 0.00 38.35 2.71
1521 5215 2.756760 GAGTACATTAGGTCACACGGGA 59.243 50.000 0.00 0.00 0.00 5.14
1590 5295 3.255642 TCAACAATTTTAGGACCTGCTGC 59.744 43.478 3.53 0.00 0.00 5.25
1611 5316 1.073923 CTTGTGGGAAGTAGGGCTGTT 59.926 52.381 0.00 0.00 0.00 3.16
1647 5388 6.662865 TCTTCATCTTCTTCTGAGTGTTCT 57.337 37.500 0.00 0.00 0.00 3.01
1648 5389 7.060383 TCTTCATCTTCTTCTGAGTGTTCTT 57.940 36.000 0.00 0.00 0.00 2.52
1649 5390 7.151308 TCTTCATCTTCTTCTGAGTGTTCTTC 58.849 38.462 0.00 0.00 0.00 2.87
1650 5391 6.662865 TCATCTTCTTCTGAGTGTTCTTCT 57.337 37.500 0.00 0.00 0.00 2.85
1651 5392 7.767250 TCATCTTCTTCTGAGTGTTCTTCTA 57.233 36.000 0.00 0.00 0.00 2.10
1652 5393 7.825681 TCATCTTCTTCTGAGTGTTCTTCTAG 58.174 38.462 0.00 0.00 0.00 2.43
1807 5621 5.130311 TGCTCCAAAATCTGCTGGTATACTA 59.870 40.000 2.25 0.00 34.11 1.82
1808 5622 6.055588 GCTCCAAAATCTGCTGGTATACTAA 58.944 40.000 2.25 0.00 34.11 2.24
1809 5623 6.203723 GCTCCAAAATCTGCTGGTATACTAAG 59.796 42.308 2.25 2.55 34.11 2.18
1810 5624 7.195374 TCCAAAATCTGCTGGTATACTAAGT 57.805 36.000 2.25 0.00 34.11 2.24
1811 5625 8.313944 TCCAAAATCTGCTGGTATACTAAGTA 57.686 34.615 2.25 0.36 34.11 2.24
2058 5905 7.678690 GCATAAGTGCGTGTGTATAGGAATTTT 60.679 37.037 0.00 0.00 42.28 1.82
2091 5938 8.856490 TTTTTCAAACAATCTTGCTAAGTCTC 57.144 30.769 0.00 0.00 0.00 3.36
2134 5981 2.094700 GTCTCAGTCGGTGCTGTATTCA 60.095 50.000 0.00 0.00 37.70 2.57
2146 5993 6.868339 CGGTGCTGTATTCATTAGATCATACA 59.132 38.462 0.00 0.00 30.62 2.29
2163 6010 5.852827 TCATACATTGAGATCCGTGCAATA 58.147 37.500 0.00 0.00 31.54 1.90
2168 6015 6.498304 ACATTGAGATCCGTGCAATATTTTC 58.502 36.000 0.00 0.00 31.54 2.29
2170 6017 6.757897 TTGAGATCCGTGCAATATTTTCTT 57.242 33.333 0.00 0.00 0.00 2.52
2171 6018 6.757897 TGAGATCCGTGCAATATTTTCTTT 57.242 33.333 0.00 0.00 0.00 2.52
2172 6019 7.156876 TGAGATCCGTGCAATATTTTCTTTT 57.843 32.000 0.00 0.00 0.00 2.27
2173 6020 7.250569 TGAGATCCGTGCAATATTTTCTTTTC 58.749 34.615 0.00 0.00 0.00 2.29
2175 6022 7.253422 AGATCCGTGCAATATTTTCTTTTCAG 58.747 34.615 0.00 0.00 0.00 3.02
2176 6023 6.567687 TCCGTGCAATATTTTCTTTTCAGA 57.432 33.333 0.00 0.00 0.00 3.27
2177 6024 7.156876 TCCGTGCAATATTTTCTTTTCAGAT 57.843 32.000 0.00 0.00 0.00 2.90
2178 6025 7.601856 TCCGTGCAATATTTTCTTTTCAGATT 58.398 30.769 0.00 0.00 0.00 2.40
2224 6071 9.948964 ATGGTATATCATTTGATCGAGATTTGA 57.051 29.630 0.00 0.00 36.05 2.69
2252 6099 7.964666 AATCTAAGTTGACTAAGACCTAGCT 57.035 36.000 0.00 0.00 0.00 3.32
2253 6100 6.761099 TCTAAGTTGACTAAGACCTAGCTG 57.239 41.667 0.00 0.00 0.00 4.24
2254 6101 6.482524 TCTAAGTTGACTAAGACCTAGCTGA 58.517 40.000 0.00 0.00 0.00 4.26
2255 6102 7.120051 TCTAAGTTGACTAAGACCTAGCTGAT 58.880 38.462 0.00 0.00 0.00 2.90
2256 6103 5.590530 AGTTGACTAAGACCTAGCTGATG 57.409 43.478 0.00 0.00 0.00 3.07
2257 6104 5.265191 AGTTGACTAAGACCTAGCTGATGA 58.735 41.667 0.00 0.00 0.00 2.92
2258 6105 5.717178 AGTTGACTAAGACCTAGCTGATGAA 59.283 40.000 0.00 0.00 0.00 2.57
2259 6106 5.843673 TGACTAAGACCTAGCTGATGAAG 57.156 43.478 0.00 0.00 0.00 3.02
2273 6120 4.384056 CTGATGAAGCAATGTACCTAGGG 58.616 47.826 14.81 0.00 0.00 3.53
2274 6121 3.780294 TGATGAAGCAATGTACCTAGGGT 59.220 43.478 14.81 1.17 40.16 4.34
2275 6122 4.966168 TGATGAAGCAATGTACCTAGGGTA 59.034 41.667 14.81 0.12 37.09 3.69
2276 6123 5.070446 TGATGAAGCAATGTACCTAGGGTAG 59.930 44.000 14.81 0.00 39.02 3.18
2287 6134 1.280457 CTAGGGTAGGATCATGGGCC 58.720 60.000 0.00 0.00 0.00 5.80
2288 6135 0.874594 TAGGGTAGGATCATGGGCCT 59.125 55.000 4.53 11.27 38.31 5.19
2289 6136 0.769776 AGGGTAGGATCATGGGCCTG 60.770 60.000 15.04 0.24 35.73 4.85
2290 6137 1.062488 GGGTAGGATCATGGGCCTGT 61.062 60.000 15.04 0.00 35.73 4.00
2291 6138 0.398318 GGTAGGATCATGGGCCTGTC 59.602 60.000 15.04 9.20 35.73 3.51
2292 6139 0.398318 GTAGGATCATGGGCCTGTCC 59.602 60.000 15.04 7.02 35.73 4.02
2293 6140 0.030195 TAGGATCATGGGCCTGTCCA 60.030 55.000 15.04 0.00 41.60 4.02
2294 6141 0.920763 AGGATCATGGGCCTGTCCAA 60.921 55.000 4.53 0.00 40.62 3.53
2295 6142 0.033208 GGATCATGGGCCTGTCCAAA 60.033 55.000 4.53 0.00 40.62 3.28
2296 6143 1.106285 GATCATGGGCCTGTCCAAAC 58.894 55.000 4.53 0.00 40.62 2.93
2297 6144 0.706433 ATCATGGGCCTGTCCAAACT 59.294 50.000 4.53 0.00 40.62 2.66
2298 6145 1.367346 TCATGGGCCTGTCCAAACTA 58.633 50.000 4.53 0.00 40.62 2.24
2299 6146 1.004277 TCATGGGCCTGTCCAAACTAC 59.996 52.381 4.53 0.00 40.62 2.73
2300 6147 0.331616 ATGGGCCTGTCCAAACTACC 59.668 55.000 4.53 0.00 40.62 3.18
2301 6148 1.001269 GGGCCTGTCCAAACTACCC 60.001 63.158 0.84 0.00 36.21 3.69
2302 6149 1.498176 GGGCCTGTCCAAACTACCCT 61.498 60.000 0.84 0.00 36.21 4.34
2303 6150 0.035343 GGCCTGTCCAAACTACCCTC 60.035 60.000 0.00 0.00 34.01 4.30
2304 6151 0.035343 GCCTGTCCAAACTACCCTCC 60.035 60.000 0.00 0.00 0.00 4.30
2305 6152 0.618981 CCTGTCCAAACTACCCTCCC 59.381 60.000 0.00 0.00 0.00 4.30
2306 6153 0.618981 CTGTCCAAACTACCCTCCCC 59.381 60.000 0.00 0.00 0.00 4.81
2307 6154 0.104356 TGTCCAAACTACCCTCCCCA 60.104 55.000 0.00 0.00 0.00 4.96
2308 6155 1.069775 GTCCAAACTACCCTCCCCAA 58.930 55.000 0.00 0.00 0.00 4.12
2309 6156 1.004394 GTCCAAACTACCCTCCCCAAG 59.996 57.143 0.00 0.00 0.00 3.61
2310 6157 0.331616 CCAAACTACCCTCCCCAAGG 59.668 60.000 0.00 0.00 45.77 3.61
2321 6168 3.320610 CTCCCCAAGGACATCTCTAGA 57.679 52.381 0.00 0.00 37.19 2.43
2322 6169 3.647636 CTCCCCAAGGACATCTCTAGAA 58.352 50.000 0.00 0.00 37.19 2.10
2323 6170 4.033709 CTCCCCAAGGACATCTCTAGAAA 58.966 47.826 0.00 0.00 37.19 2.52
2324 6171 4.435137 TCCCCAAGGACATCTCTAGAAAA 58.565 43.478 0.00 0.00 37.19 2.29
2325 6172 4.849810 TCCCCAAGGACATCTCTAGAAAAA 59.150 41.667 0.00 0.00 37.19 1.94
2342 6189 3.982576 AAAAACCACCTGTCAATCGAC 57.017 42.857 0.00 0.00 42.93 4.20
2343 6190 2.930826 AAACCACCTGTCAATCGACT 57.069 45.000 0.00 0.00 43.06 4.18
2344 6191 2.457366 AACCACCTGTCAATCGACTC 57.543 50.000 0.00 0.00 43.06 3.36
2345 6192 1.338107 ACCACCTGTCAATCGACTCA 58.662 50.000 0.00 0.00 43.06 3.41
2346 6193 1.273606 ACCACCTGTCAATCGACTCAG 59.726 52.381 0.00 0.00 43.06 3.35
2347 6194 1.546029 CCACCTGTCAATCGACTCAGA 59.454 52.381 8.77 0.00 43.06 3.27
2348 6195 2.029020 CCACCTGTCAATCGACTCAGAA 60.029 50.000 8.77 0.00 43.06 3.02
2349 6196 3.249091 CACCTGTCAATCGACTCAGAAG 58.751 50.000 8.77 0.00 43.06 2.85
2350 6197 2.894126 ACCTGTCAATCGACTCAGAAGT 59.106 45.455 8.77 0.00 43.06 3.01
2351 6198 3.249091 CCTGTCAATCGACTCAGAAGTG 58.751 50.000 8.77 0.00 43.06 3.16
2352 6199 3.305676 CCTGTCAATCGACTCAGAAGTGT 60.306 47.826 8.77 0.00 43.06 3.55
2353 6200 4.302455 CTGTCAATCGACTCAGAAGTGTT 58.698 43.478 0.00 0.00 43.06 3.32
2354 6201 4.299155 TGTCAATCGACTCAGAAGTGTTC 58.701 43.478 0.00 0.00 43.06 3.18
2355 6202 3.675698 GTCAATCGACTCAGAAGTGTTCC 59.324 47.826 0.00 0.00 39.22 3.62
2356 6203 3.320826 TCAATCGACTCAGAAGTGTTCCA 59.679 43.478 0.00 0.00 35.28 3.53
2357 6204 2.795175 TCGACTCAGAAGTGTTCCAC 57.205 50.000 0.00 0.00 35.28 4.02
2358 6205 8.880410 GTCAATCGACTCAGAAGTGTTCCACT 62.880 46.154 0.00 0.00 41.78 4.00
2359 6206 2.293677 TCGACTCAGAAGTGTTCCACTC 59.706 50.000 0.00 0.00 44.62 3.51
2360 6207 2.667137 GACTCAGAAGTGTTCCACTCG 58.333 52.381 0.00 0.00 44.62 4.18
2361 6208 2.293677 GACTCAGAAGTGTTCCACTCGA 59.706 50.000 0.00 0.00 44.62 4.04
2362 6209 2.034812 ACTCAGAAGTGTTCCACTCGAC 59.965 50.000 0.00 0.00 44.62 4.20
2363 6210 1.001706 TCAGAAGTGTTCCACTCGACG 60.002 52.381 0.00 0.00 44.62 5.12
2364 6211 0.314302 AGAAGTGTTCCACTCGACGG 59.686 55.000 0.00 0.00 44.62 4.79
2365 6212 0.313043 GAAGTGTTCCACTCGACGGA 59.687 55.000 0.00 0.00 44.62 4.69
2366 6213 0.031721 AAGTGTTCCACTCGACGGAC 59.968 55.000 0.00 0.00 44.62 4.79
2367 6214 0.822532 AGTGTTCCACTCGACGGACT 60.823 55.000 0.00 0.00 41.21 3.85
2368 6215 0.386985 GTGTTCCACTCGACGGACTC 60.387 60.000 0.00 0.00 30.29 3.36
2369 6216 1.154263 GTTCCACTCGACGGACTCG 60.154 63.158 0.00 0.00 44.44 4.18
2376 6223 4.436653 CGACGGACTCGAAGACAC 57.563 61.111 0.00 0.00 46.14 3.67
2377 6224 1.867615 CGACGGACTCGAAGACACT 59.132 57.895 0.00 0.00 46.14 3.55
2378 6225 0.179220 CGACGGACTCGAAGACACTC 60.179 60.000 0.00 0.00 46.14 3.51
2379 6226 0.179220 GACGGACTCGAAGACACTCG 60.179 60.000 0.00 0.00 40.11 4.18
2380 6227 0.602106 ACGGACTCGAAGACACTCGA 60.602 55.000 0.00 0.00 45.22 4.04
2381 6228 0.179220 CGGACTCGAAGACACTCGAC 60.179 60.000 0.00 0.00 42.69 4.20
2382 6229 0.168568 GGACTCGAAGACACTCGACC 59.831 60.000 0.00 0.00 42.69 4.79
2383 6230 0.873054 GACTCGAAGACACTCGACCA 59.127 55.000 0.00 0.00 42.69 4.02
2384 6231 1.469308 GACTCGAAGACACTCGACCAT 59.531 52.381 0.00 0.00 42.69 3.55
2385 6232 1.200252 ACTCGAAGACACTCGACCATG 59.800 52.381 0.00 0.00 42.69 3.66
2386 6233 1.468914 CTCGAAGACACTCGACCATGA 59.531 52.381 0.00 0.00 42.69 3.07
2387 6234 1.883926 TCGAAGACACTCGACCATGAA 59.116 47.619 0.00 0.00 42.69 2.57
2388 6235 2.095212 TCGAAGACACTCGACCATGAAG 60.095 50.000 0.00 0.00 42.69 3.02
2389 6236 1.996191 GAAGACACTCGACCATGAAGC 59.004 52.381 0.00 0.00 0.00 3.86
2390 6237 0.247736 AGACACTCGACCATGAAGCC 59.752 55.000 0.00 0.00 0.00 4.35
2391 6238 0.037326 GACACTCGACCATGAAGCCA 60.037 55.000 0.00 0.00 0.00 4.75
2392 6239 0.396435 ACACTCGACCATGAAGCCAA 59.604 50.000 0.00 0.00 0.00 4.52
2393 6240 0.798776 CACTCGACCATGAAGCCAAC 59.201 55.000 0.00 0.00 0.00 3.77
2394 6241 0.321653 ACTCGACCATGAAGCCAACC 60.322 55.000 0.00 0.00 0.00 3.77
2395 6242 0.321564 CTCGACCATGAAGCCAACCA 60.322 55.000 0.00 0.00 0.00 3.67
2396 6243 0.605319 TCGACCATGAAGCCAACCAC 60.605 55.000 0.00 0.00 0.00 4.16
2397 6244 0.606401 CGACCATGAAGCCAACCACT 60.606 55.000 0.00 0.00 0.00 4.00
2398 6245 1.168714 GACCATGAAGCCAACCACTC 58.831 55.000 0.00 0.00 0.00 3.51
2399 6246 0.606401 ACCATGAAGCCAACCACTCG 60.606 55.000 0.00 0.00 0.00 4.18
2400 6247 0.321564 CCATGAAGCCAACCACTCGA 60.322 55.000 0.00 0.00 0.00 4.04
2401 6248 0.798776 CATGAAGCCAACCACTCGAC 59.201 55.000 0.00 0.00 0.00 4.20
2402 6249 0.396435 ATGAAGCCAACCACTCGACA 59.604 50.000 0.00 0.00 0.00 4.35
2403 6250 0.249868 TGAAGCCAACCACTCGACAG 60.250 55.000 0.00 0.00 0.00 3.51
2404 6251 1.569479 GAAGCCAACCACTCGACAGC 61.569 60.000 0.00 0.00 0.00 4.40
2405 6252 3.050275 GCCAACCACTCGACAGCC 61.050 66.667 0.00 0.00 0.00 4.85
2406 6253 2.425592 CCAACCACTCGACAGCCA 59.574 61.111 0.00 0.00 0.00 4.75
2407 6254 1.669115 CCAACCACTCGACAGCCAG 60.669 63.158 0.00 0.00 0.00 4.85
2408 6255 1.367471 CAACCACTCGACAGCCAGA 59.633 57.895 0.00 0.00 0.00 3.86
2409 6256 0.249868 CAACCACTCGACAGCCAGAA 60.250 55.000 0.00 0.00 0.00 3.02
2410 6257 0.034059 AACCACTCGACAGCCAGAAG 59.966 55.000 0.00 0.00 0.00 2.85
2411 6258 0.827925 ACCACTCGACAGCCAGAAGA 60.828 55.000 0.00 0.00 0.00 2.87
2412 6259 0.534412 CCACTCGACAGCCAGAAGAT 59.466 55.000 0.00 0.00 0.00 2.40
2413 6260 1.470632 CCACTCGACAGCCAGAAGATC 60.471 57.143 0.00 0.00 0.00 2.75
2414 6261 1.476085 CACTCGACAGCCAGAAGATCT 59.524 52.381 0.00 0.00 0.00 2.75
2415 6262 2.685388 CACTCGACAGCCAGAAGATCTA 59.315 50.000 0.00 0.00 0.00 1.98
2416 6263 3.129462 CACTCGACAGCCAGAAGATCTAA 59.871 47.826 0.00 0.00 0.00 2.10
2417 6264 3.764434 ACTCGACAGCCAGAAGATCTAAA 59.236 43.478 0.00 0.00 0.00 1.85
2418 6265 4.142271 ACTCGACAGCCAGAAGATCTAAAG 60.142 45.833 0.00 0.00 0.00 1.85
2419 6266 3.764434 TCGACAGCCAGAAGATCTAAAGT 59.236 43.478 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.904865 CCTACTGACCTGACCTGGCA 60.905 60.000 0.00 0.00 0.00 4.92
1 2 0.905337 ACCTACTGACCTGACCTGGC 60.905 60.000 0.00 0.00 0.00 4.85
2 3 0.898320 CACCTACTGACCTGACCTGG 59.102 60.000 0.00 0.00 0.00 4.45
3 4 0.898320 CCACCTACTGACCTGACCTG 59.102 60.000 0.00 0.00 0.00 4.00
4 5 0.252284 CCCACCTACTGACCTGACCT 60.252 60.000 0.00 0.00 0.00 3.85
5 6 1.900545 GCCCACCTACTGACCTGACC 61.901 65.000 0.00 0.00 0.00 4.02
6 7 0.905337 AGCCCACCTACTGACCTGAC 60.905 60.000 0.00 0.00 0.00 3.51
7 8 0.614979 GAGCCCACCTACTGACCTGA 60.615 60.000 0.00 0.00 0.00 3.86
8 9 1.617947 GGAGCCCACCTACTGACCTG 61.618 65.000 0.00 0.00 0.00 4.00
9 10 1.306226 GGAGCCCACCTACTGACCT 60.306 63.158 0.00 0.00 0.00 3.85
10 11 1.198759 TTGGAGCCCACCTACTGACC 61.199 60.000 0.00 0.00 30.78 4.02
11 12 0.250513 CTTGGAGCCCACCTACTGAC 59.749 60.000 0.00 0.00 30.78 3.51
12 13 0.116342 TCTTGGAGCCCACCTACTGA 59.884 55.000 0.00 0.00 30.78 3.41
13 14 1.134280 CATCTTGGAGCCCACCTACTG 60.134 57.143 0.00 0.00 30.78 2.74
14 15 1.207791 CATCTTGGAGCCCACCTACT 58.792 55.000 0.00 0.00 30.78 2.57
15 16 1.134371 GTCATCTTGGAGCCCACCTAC 60.134 57.143 0.00 0.00 30.78 3.18
16 17 1.204146 GTCATCTTGGAGCCCACCTA 58.796 55.000 0.00 0.00 30.78 3.08
17 18 0.842030 TGTCATCTTGGAGCCCACCT 60.842 55.000 0.00 0.00 30.78 4.00
18 19 0.393537 CTGTCATCTTGGAGCCCACC 60.394 60.000 0.00 0.00 30.78 4.61
19 20 1.028868 GCTGTCATCTTGGAGCCCAC 61.029 60.000 0.00 0.00 30.78 4.61
20 21 1.300963 GCTGTCATCTTGGAGCCCA 59.699 57.895 0.00 0.00 0.00 5.36
21 22 1.817099 CGCTGTCATCTTGGAGCCC 60.817 63.158 0.00 0.00 0.00 5.19
22 23 0.391661 TTCGCTGTCATCTTGGAGCC 60.392 55.000 0.00 0.00 0.00 4.70
23 24 1.442769 TTTCGCTGTCATCTTGGAGC 58.557 50.000 0.00 0.00 0.00 4.70
24 25 3.529533 AGATTTCGCTGTCATCTTGGAG 58.470 45.455 0.00 0.00 0.00 3.86
25 26 3.196469 AGAGATTTCGCTGTCATCTTGGA 59.804 43.478 0.00 0.00 0.00 3.53
26 27 3.529533 AGAGATTTCGCTGTCATCTTGG 58.470 45.455 0.00 0.00 0.00 3.61
27 28 4.431809 AGAGAGATTTCGCTGTCATCTTG 58.568 43.478 0.00 0.00 31.80 3.02
28 29 4.159321 TGAGAGAGATTTCGCTGTCATCTT 59.841 41.667 6.99 0.00 40.12 2.40
29 30 3.698539 TGAGAGAGATTTCGCTGTCATCT 59.301 43.478 6.99 0.00 40.12 2.90
30 31 3.796178 GTGAGAGAGATTTCGCTGTCATC 59.204 47.826 12.84 5.36 44.78 2.92
31 32 3.430098 GGTGAGAGAGATTTCGCTGTCAT 60.430 47.826 12.84 0.00 44.78 3.06
32 33 2.094494 GGTGAGAGAGATTTCGCTGTCA 60.094 50.000 6.99 6.99 42.03 3.58
33 34 2.165437 AGGTGAGAGAGATTTCGCTGTC 59.835 50.000 0.00 2.20 36.78 3.51
34 35 2.165437 GAGGTGAGAGAGATTTCGCTGT 59.835 50.000 0.00 0.00 33.29 4.40
35 36 2.481104 GGAGGTGAGAGAGATTTCGCTG 60.481 54.545 0.00 0.00 33.29 5.18
36 37 1.754226 GGAGGTGAGAGAGATTTCGCT 59.246 52.381 0.00 0.00 36.07 4.93
37 38 1.478510 TGGAGGTGAGAGAGATTTCGC 59.521 52.381 0.00 0.00 0.00 4.70
38 39 2.478709 CGTGGAGGTGAGAGAGATTTCG 60.479 54.545 0.00 0.00 0.00 3.46
39 40 2.737039 GCGTGGAGGTGAGAGAGATTTC 60.737 54.545 0.00 0.00 0.00 2.17
40 41 1.205893 GCGTGGAGGTGAGAGAGATTT 59.794 52.381 0.00 0.00 0.00 2.17
41 42 0.820871 GCGTGGAGGTGAGAGAGATT 59.179 55.000 0.00 0.00 0.00 2.40
42 43 1.380403 CGCGTGGAGGTGAGAGAGAT 61.380 60.000 0.00 0.00 0.00 2.75
43 44 2.041115 CGCGTGGAGGTGAGAGAGA 61.041 63.158 0.00 0.00 0.00 3.10
336 692 7.563924 TGTTAGAGCTAGTAATTAGACCATGGT 59.436 37.037 19.89 19.89 0.00 3.55
337 693 7.952671 TGTTAGAGCTAGTAATTAGACCATGG 58.047 38.462 11.19 11.19 0.00 3.66
338 694 9.416794 CATGTTAGAGCTAGTAATTAGACCATG 57.583 37.037 0.00 0.00 0.00 3.66
339 695 9.368416 TCATGTTAGAGCTAGTAATTAGACCAT 57.632 33.333 0.00 0.00 0.00 3.55
340 696 8.762481 TCATGTTAGAGCTAGTAATTAGACCA 57.238 34.615 0.00 0.00 0.00 4.02
341 697 9.849166 GATCATGTTAGAGCTAGTAATTAGACC 57.151 37.037 0.00 0.00 0.00 3.85
346 702 8.918116 TCAGTGATCATGTTAGAGCTAGTAATT 58.082 33.333 0.00 0.00 0.00 1.40
347 703 8.470657 TCAGTGATCATGTTAGAGCTAGTAAT 57.529 34.615 0.00 0.00 0.00 1.89
524 2479 5.637006 TGATTTTGGTGGATTCTTTACCG 57.363 39.130 0.00 0.00 37.29 4.02
820 3891 1.358759 GGAGTTTGTGGGTTGCACG 59.641 57.895 0.00 0.00 0.00 5.34
945 4470 2.124942 CTCTTGGAAGCGGAGGCC 60.125 66.667 0.00 0.00 41.24 5.19
946 4471 1.448717 GACTCTTGGAAGCGGAGGC 60.449 63.158 0.00 0.00 40.37 4.70
947 4472 0.174617 GAGACTCTTGGAAGCGGAGG 59.825 60.000 0.00 0.00 0.00 4.30
948 4473 0.179150 CGAGACTCTTGGAAGCGGAG 60.179 60.000 0.03 0.00 0.00 4.63
949 4474 0.608308 TCGAGACTCTTGGAAGCGGA 60.608 55.000 0.03 0.00 0.00 5.54
950 4475 0.179150 CTCGAGACTCTTGGAAGCGG 60.179 60.000 6.58 0.00 0.00 5.52
951 4476 0.179150 CCTCGAGACTCTTGGAAGCG 60.179 60.000 15.71 0.00 0.00 4.68
952 4477 0.892063 ACCTCGAGACTCTTGGAAGC 59.108 55.000 15.71 0.00 0.00 3.86
1392 4977 3.310253 GAGCGCAGAGTCGTCGTCA 62.310 63.158 11.47 0.00 0.00 4.35
1465 5079 2.320587 GGTCAGAACACAGCAGCCG 61.321 63.158 0.00 0.00 0.00 5.52
1508 5195 0.611200 CACCAATCCCGTGTGACCTA 59.389 55.000 0.00 0.00 31.66 3.08
1521 5215 1.916181 CCTGTTCTACCCTCCACCAAT 59.084 52.381 0.00 0.00 0.00 3.16
1590 5295 0.035056 CAGCCCTACTTCCCACAAGG 60.035 60.000 0.00 0.00 0.00 3.61
1864 5678 6.554982 ACCACTGTATTCTATGATAGGCTTCA 59.445 38.462 0.00 0.00 0.00 3.02
1956 5803 8.265165 AGATTTTTAATAAGACCAGACGTTCC 57.735 34.615 0.00 0.00 0.00 3.62
2090 5937 8.304596 AGACATAACGAAGTCTAAATCAACTGA 58.695 33.333 0.00 0.00 45.00 3.41
2091 5938 8.467402 AGACATAACGAAGTCTAAATCAACTG 57.533 34.615 0.00 0.00 45.00 3.16
2134 5981 6.815641 GCACGGATCTCAATGTATGATCTAAT 59.184 38.462 0.00 0.00 37.44 1.73
2146 5993 6.949352 AGAAAATATTGCACGGATCTCAAT 57.051 33.333 0.00 1.12 35.02 2.57
2230 6077 6.482524 TCAGCTAGGTCTTAGTCAACTTAGA 58.517 40.000 0.00 0.00 29.20 2.10
2252 6099 3.780294 ACCCTAGGTACATTGCTTCATCA 59.220 43.478 8.29 0.00 32.11 3.07
2253 6100 4.423625 ACCCTAGGTACATTGCTTCATC 57.576 45.455 8.29 0.00 32.11 2.92
2254 6101 4.348168 CCTACCCTAGGTACATTGCTTCAT 59.652 45.833 8.29 0.00 41.18 2.57
2255 6102 3.709653 CCTACCCTAGGTACATTGCTTCA 59.290 47.826 8.29 0.00 41.18 3.02
2256 6103 3.965347 TCCTACCCTAGGTACATTGCTTC 59.035 47.826 8.29 0.00 46.32 3.86
2257 6104 4.003584 TCCTACCCTAGGTACATTGCTT 57.996 45.455 8.29 0.00 46.32 3.91
2258 6105 3.700863 TCCTACCCTAGGTACATTGCT 57.299 47.619 8.29 0.00 46.32 3.91
2259 6106 3.901844 TGATCCTACCCTAGGTACATTGC 59.098 47.826 8.29 0.00 46.32 3.56
2260 6107 5.046304 CCATGATCCTACCCTAGGTACATTG 60.046 48.000 8.29 0.00 46.32 2.82
2261 6108 5.094387 CCATGATCCTACCCTAGGTACATT 58.906 45.833 8.29 0.00 46.32 2.71
2262 6109 4.512942 CCCATGATCCTACCCTAGGTACAT 60.513 50.000 8.29 0.00 46.32 2.29
2263 6110 3.181410 CCCATGATCCTACCCTAGGTACA 60.181 52.174 8.29 0.00 46.32 2.90
2264 6111 3.442076 CCCATGATCCTACCCTAGGTAC 58.558 54.545 8.29 0.00 46.32 3.34
2265 6112 2.225547 GCCCATGATCCTACCCTAGGTA 60.226 54.545 8.29 0.00 46.32 3.08
2266 6113 1.485210 GCCCATGATCCTACCCTAGGT 60.485 57.143 8.29 0.00 46.32 3.08
2268 6115 1.203364 AGGCCCATGATCCTACCCTAG 60.203 57.143 0.00 0.00 0.00 3.02
2269 6116 0.874594 AGGCCCATGATCCTACCCTA 59.125 55.000 0.00 0.00 0.00 3.53
2270 6117 0.769776 CAGGCCCATGATCCTACCCT 60.770 60.000 0.00 0.00 0.00 4.34
2271 6118 1.062488 ACAGGCCCATGATCCTACCC 61.062 60.000 0.00 0.00 0.00 3.69
2272 6119 0.398318 GACAGGCCCATGATCCTACC 59.602 60.000 0.00 0.00 0.00 3.18
2273 6120 0.398318 GGACAGGCCCATGATCCTAC 59.602 60.000 0.00 0.00 0.00 3.18
2274 6121 0.030195 TGGACAGGCCCATGATCCTA 60.030 55.000 0.00 0.00 34.97 2.94
2275 6122 0.920763 TTGGACAGGCCCATGATCCT 60.921 55.000 0.00 0.00 35.87 3.24
2276 6123 0.033208 TTTGGACAGGCCCATGATCC 60.033 55.000 0.00 0.00 35.87 3.36
2277 6124 1.106285 GTTTGGACAGGCCCATGATC 58.894 55.000 0.00 0.00 35.87 2.92
2278 6125 0.706433 AGTTTGGACAGGCCCATGAT 59.294 50.000 0.00 0.00 35.87 2.45
2279 6126 1.004277 GTAGTTTGGACAGGCCCATGA 59.996 52.381 0.00 0.00 35.87 3.07
2280 6127 1.463674 GTAGTTTGGACAGGCCCATG 58.536 55.000 0.00 0.00 35.87 3.66
2281 6128 0.331616 GGTAGTTTGGACAGGCCCAT 59.668 55.000 0.00 0.00 35.87 4.00
2282 6129 1.765074 GGTAGTTTGGACAGGCCCA 59.235 57.895 0.00 0.00 34.97 5.36
2283 6130 1.001269 GGGTAGTTTGGACAGGCCC 60.001 63.158 0.00 0.00 34.97 5.80
2284 6131 0.035343 GAGGGTAGTTTGGACAGGCC 60.035 60.000 0.00 0.00 37.10 5.19
2285 6132 0.035343 GGAGGGTAGTTTGGACAGGC 60.035 60.000 0.00 0.00 0.00 4.85
2286 6133 0.618981 GGGAGGGTAGTTTGGACAGG 59.381 60.000 0.00 0.00 0.00 4.00
2287 6134 0.618981 GGGGAGGGTAGTTTGGACAG 59.381 60.000 0.00 0.00 0.00 3.51
2288 6135 0.104356 TGGGGAGGGTAGTTTGGACA 60.104 55.000 0.00 0.00 0.00 4.02
2289 6136 1.004394 CTTGGGGAGGGTAGTTTGGAC 59.996 57.143 0.00 0.00 0.00 4.02
2290 6137 1.368374 CTTGGGGAGGGTAGTTTGGA 58.632 55.000 0.00 0.00 0.00 3.53
2291 6138 0.331616 CCTTGGGGAGGGTAGTTTGG 59.668 60.000 0.00 0.00 42.26 3.28
2292 6139 1.004394 GTCCTTGGGGAGGGTAGTTTG 59.996 57.143 0.00 0.00 46.31 2.93
2293 6140 1.369403 GTCCTTGGGGAGGGTAGTTT 58.631 55.000 0.00 0.00 46.31 2.66
2294 6141 0.195096 TGTCCTTGGGGAGGGTAGTT 59.805 55.000 0.00 0.00 46.31 2.24
2295 6142 0.421904 ATGTCCTTGGGGAGGGTAGT 59.578 55.000 0.00 0.00 46.31 2.73
2296 6143 1.132500 GATGTCCTTGGGGAGGGTAG 58.868 60.000 0.00 0.00 46.31 3.18
2297 6144 0.722676 AGATGTCCTTGGGGAGGGTA 59.277 55.000 0.00 0.00 46.31 3.69
2298 6145 0.621862 GAGATGTCCTTGGGGAGGGT 60.622 60.000 0.00 0.00 46.31 4.34
2299 6146 0.327000 AGAGATGTCCTTGGGGAGGG 60.327 60.000 0.00 0.00 46.31 4.30
2301 6148 3.320610 TCTAGAGATGTCCTTGGGGAG 57.679 52.381 0.00 0.00 43.12 4.30
2302 6149 3.776731 TTCTAGAGATGTCCTTGGGGA 57.223 47.619 0.00 0.00 39.70 4.81
2303 6150 4.844349 TTTTCTAGAGATGTCCTTGGGG 57.156 45.455 0.00 0.00 0.00 4.96
2322 6169 3.982576 GTCGATTGACAGGTGGTTTTT 57.017 42.857 8.31 0.00 44.82 1.94
2333 6180 3.675698 GGAACACTTCTGAGTCGATTGAC 59.324 47.826 4.78 4.78 45.86 3.18
2334 6181 3.320826 TGGAACACTTCTGAGTCGATTGA 59.679 43.478 0.00 0.00 32.54 2.57
2335 6182 3.653344 TGGAACACTTCTGAGTCGATTG 58.347 45.455 0.00 0.00 32.54 2.67
2350 6197 1.954528 GAGTCCGTCGAGTGGAACA 59.045 57.895 7.86 0.00 41.43 3.18
2351 6198 4.863984 GAGTCCGTCGAGTGGAAC 57.136 61.111 7.86 2.88 37.23 3.62
2360 6207 0.179220 CGAGTGTCTTCGAGTCCGTC 60.179 60.000 0.00 0.00 43.03 4.79
2361 6208 0.602106 TCGAGTGTCTTCGAGTCCGT 60.602 55.000 0.00 0.00 44.00 4.69
2362 6209 2.160063 TCGAGTGTCTTCGAGTCCG 58.840 57.895 0.00 0.00 44.00 4.79
2367 6214 1.530323 TCATGGTCGAGTGTCTTCGA 58.470 50.000 0.00 0.00 46.41 3.71
2368 6215 2.254459 CTTCATGGTCGAGTGTCTTCG 58.746 52.381 0.00 0.00 41.79 3.79
2369 6216 1.996191 GCTTCATGGTCGAGTGTCTTC 59.004 52.381 0.00 0.00 0.00 2.87
2370 6217 1.338200 GGCTTCATGGTCGAGTGTCTT 60.338 52.381 0.00 0.00 0.00 3.01
2371 6218 0.247736 GGCTTCATGGTCGAGTGTCT 59.752 55.000 0.00 0.00 0.00 3.41
2372 6219 0.037326 TGGCTTCATGGTCGAGTGTC 60.037 55.000 0.00 0.00 0.00 3.67
2373 6220 0.396435 TTGGCTTCATGGTCGAGTGT 59.604 50.000 0.00 0.00 0.00 3.55
2374 6221 0.798776 GTTGGCTTCATGGTCGAGTG 59.201 55.000 0.00 0.00 0.00 3.51
2375 6222 0.321653 GGTTGGCTTCATGGTCGAGT 60.322 55.000 0.00 0.00 0.00 4.18
2376 6223 0.321564 TGGTTGGCTTCATGGTCGAG 60.322 55.000 0.00 0.00 0.00 4.04
2377 6224 0.605319 GTGGTTGGCTTCATGGTCGA 60.605 55.000 0.00 0.00 0.00 4.20
2378 6225 0.606401 AGTGGTTGGCTTCATGGTCG 60.606 55.000 0.00 0.00 0.00 4.79
2379 6226 1.168714 GAGTGGTTGGCTTCATGGTC 58.831 55.000 0.00 0.00 0.00 4.02
2380 6227 0.606401 CGAGTGGTTGGCTTCATGGT 60.606 55.000 0.00 0.00 0.00 3.55
2381 6228 0.321564 TCGAGTGGTTGGCTTCATGG 60.322 55.000 0.00 0.00 0.00 3.66
2382 6229 0.798776 GTCGAGTGGTTGGCTTCATG 59.201 55.000 0.00 0.00 0.00 3.07
2383 6230 0.396435 TGTCGAGTGGTTGGCTTCAT 59.604 50.000 0.00 0.00 0.00 2.57
2384 6231 0.249868 CTGTCGAGTGGTTGGCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
2385 6232 1.569479 GCTGTCGAGTGGTTGGCTTC 61.569 60.000 0.00 0.00 0.00 3.86
2386 6233 1.598130 GCTGTCGAGTGGTTGGCTT 60.598 57.895 0.00 0.00 0.00 4.35
2387 6234 2.031163 GCTGTCGAGTGGTTGGCT 59.969 61.111 0.00 0.00 0.00 4.75
2388 6235 3.050275 GGCTGTCGAGTGGTTGGC 61.050 66.667 0.00 0.00 0.00 4.52
2389 6236 1.669115 CTGGCTGTCGAGTGGTTGG 60.669 63.158 0.00 0.00 0.00 3.77
2390 6237 0.249868 TTCTGGCTGTCGAGTGGTTG 60.250 55.000 0.00 0.00 0.00 3.77
2391 6238 0.034059 CTTCTGGCTGTCGAGTGGTT 59.966 55.000 0.00 0.00 0.00 3.67
2392 6239 0.827925 TCTTCTGGCTGTCGAGTGGT 60.828 55.000 0.00 0.00 0.00 4.16
2393 6240 0.534412 ATCTTCTGGCTGTCGAGTGG 59.466 55.000 0.00 0.00 0.00 4.00
2394 6241 1.476085 AGATCTTCTGGCTGTCGAGTG 59.524 52.381 0.00 0.00 0.00 3.51
2395 6242 1.846007 AGATCTTCTGGCTGTCGAGT 58.154 50.000 0.00 0.00 0.00 4.18
2396 6243 4.142271 ACTTTAGATCTTCTGGCTGTCGAG 60.142 45.833 0.00 0.00 0.00 4.04
2397 6244 3.764434 ACTTTAGATCTTCTGGCTGTCGA 59.236 43.478 0.00 0.00 0.00 4.20
2398 6245 4.116747 ACTTTAGATCTTCTGGCTGTCG 57.883 45.455 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.